Psyllid ID: psy988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVSALA
Secondary Structure (PSIPRED)
ccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEEEEEcccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccEEccccEEEEEEccccccEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccccccccccccccEEEEEEccccccEEEEcccccccccccEEEEEcccccEEEEEccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEccccccEEEEEEcccccEEEEEccccccccccEEEEEcccccEEEEEEccccccccEccccccc
Coil and Loop (DISEMBL)
MDKTVRLWHISRkeclccfqhidfvtaicfhprddryflsgsldgklrlwnipdkkvAVWNEVEGQTKLITAAnfcengkfavvgsydgrcifyttdqlkyhtqihvrstrgknatgrkisgiepmpgedkilvtsndsrirlydlrdlnlsckykgyVNVSSQIKAsfshdgkyivsgsenQCIYIWKTHHdyakfssvrrdrndfwegikAHNAVvtcavfapcpeliiaqmepdksestgyvlnatgrkisgiepmpgedkilvtsndsrirlydlrdlnlsckykgyVNVSSQIKAsfshdgkyivsgsenQCIYIWKTHHdyakfssvrrdrndfwegikAHNAVvtcavfapcpeliiaqmepdksestgyVLVSADFNGVIRVFLNktkpkhsslpvsala
Flexible Loop (DISEMBL)
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLkyhtqihvrstrgknatgrkisgiepmpgedkilvtsndsrirlYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGrkisgiepmpgedKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNktkpkhsslpvsala
Low Complexity Region (SEG)
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVSALA
Disordered region (IsUnstruct)
****VRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS**********************ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM********GYVLNATGRKI**********KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME*****STGYVLVSADFNGVIRVFLN***************
Disordered Region (DISOPRED)
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA******SESTGYVLVSADFNGVIRVFLNKTKP***********
Disordered Region (DISEMBL)
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP***********
Disordered Region (DISPRO)
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVSALA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9XSC3	912	WD repeat-containing prot	yes	N/A	0.681	0.304	0.705	1e-123
Q6NVE8	915	WD repeat-containing prot	yes	N/A	0.683	0.304	0.700	1e-123
Q5JSH3	913	WD repeat-containing prot	yes	N/A	0.683	0.305	0.700	1e-122
Q9R037	908	WD repeat-containing prot	yes	N/A	0.674	0.302	0.703	1e-121
Q498F0	912	WD repeat-containing prot	N/A	N/A	0.588	0.263	0.809	1e-119
Q6LA54	933	Uncharacterized WD repeat	yes	N/A	0.453	0.198	0.528	2e-59
Q03177	834	WD repeat-containing prot	yes	N/A	0.458	0.224	0.368	4e-28
O60136	586	Uncharacterized WD repeat	no	N/A	0.700	0.488	0.308	4e-28
P32330	852	2-deoxy-glucose resistant	no	N/A	0.455	0.218	0.317	9e-22
Q8YRI1	1526	Uncharacterized WD repeat	yes	N/A	0.625	0.167	0.256	7e-17

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/295 (70%), Positives = 240/295 (81%), Gaps = 17/295 (5%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct: 625 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 684

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct: 685 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 744

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct: 745 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYLVSGS 804

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA-QMEPDKS 239
           E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++  ++ +KS
Sbjct: 805 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKS 864

Query: 240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 294
           E      N  G     +E MP           S I   D  ++ LS  + G + V
Sbjct: 865 EG-----NEKGEDAEVLETMP-----------SGIMKTDNTEVLLSADFTGAIKV 903

Downstream effector for RAB11. May be involved in vesicle recycling.
Bos taurus (taxid: 9913)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/294 (70%), Positives = 240/294 (81%), Gaps = 15/294 (5%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct: 628 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 687

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct: 688 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 747

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct: 748 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGS 807

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240
           E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++        
Sbjct: 808 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLS-------- 859

Query: 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 294
                L+    K+ GI+    ED  ++ S  + I   D  ++ LS  + G + V
Sbjct: 860 -----LDVQSEKLEGIDKY--EDAEVLDSTSTGIVKTDNTEVLLSADFTGAIKV 906

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/294 (70%), Positives = 238/294 (80%), Gaps = 15/294 (5%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct: 626 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 685

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct: 686 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 745

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct: 746 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGS 805

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240
           E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++        
Sbjct: 806 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLS-------- 857

Query: 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 294
                L+    K  G E    ED  ++ +  S I   D  ++ LS  + G + V
Sbjct: 858 -----LDVQSEKSEGNE--KSEDAEVLDATPSGIMKTDNTEVLLSADFTGAIKV 904

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/290 (70%), Positives = 238/290 (82%), Gaps = 15/290 (5%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct: 621 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 680

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct: 681 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 740

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct: 741 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGS 800

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240
           E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++        
Sbjct: 801 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLS-------- 852

Query: 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290
                L+    K+ GI+    ED  ++ +  + I   D  ++ LS  + G
Sbjct: 853 -----LDVQSEKLEGIDKY--EDAEVLDNTSTGIVKTDNTEVLLSADFTG 895

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 195/241 (80%), Positives = 219/241 (90%), Gaps = 1/241 (0%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct: 629 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 688

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NE++GQTKLITAANFC+NGK AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct: 689 NEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNRVGRKI 748

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKG VN SSQIKASFSHD  YIVSGS
Sbjct: 749 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGCVNSSSQIKASFSHDFTYIVSGS 808

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPDKS 239
           E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L++ A+   +K 
Sbjct: 809 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPGLMVSAETSSEKQ 868

Query: 240 E 240
           E
Sbjct: 869 E 869

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 142/195 (72%), Gaps = 10/195 (5%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKT RLWH  RK+CLCCF+H DFVT+I FHP+DDR+FLSGSLD KLRLW+I +K V+ W
Sbjct: 406 MDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFW 465

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NE+    +LITA  F  +G  A+ G++ G C+FY T  L++ TQ+ +RS+RGKNA G K+
Sbjct: 466 NEL---PELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKV 522

Query: 121 SGIEP-------MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG 173
           +GI+        + G+ ++LVT+NDSRIR+Y+LRD +L  K+KG+ N  SQ +A F  DG
Sbjct: 523 TGIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDG 582

Query: 174 KYIVSGSENQCIYIW 188
            Y++ GSE+  ++IW
Sbjct: 583 NYVICGSEDHQVFIW 597

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 22/209 (10%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTV+LWH  RK  L  F H DFVT + FHP DDR+F+SG LD K RLW+I D +V+  
Sbjct: 297 MDKTVKLWHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSF- 355

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV--RSTRGKNA--- 115
            E + Q  + +     E GK+ ++G+++G      T  L   +  HV  R T+ +NA   
Sbjct: 356 -EYDCQDLITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVM 414

Query: 116 ---------TGRKISGIEP----MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS 162
                     G +++G++     +    +++VTSNDSRIR++DL    L    KG+ + S
Sbjct: 415 VTETDSKIRHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGS 474

Query: 163 SQIKASFS--HDGKYIVSGSENQCIYIWK 189
           SQ KA  S  H    +V+ S++  +Y W+
Sbjct: 475 SQHKAQLSIWHGQPIVVNSSDDHWVYGWR 503

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 19/305 (6%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
           D+TVRLWH    + L  F+H + VT + FHP DDRYF+SGSLD K++LW+I   K+  W 
Sbjct: 275 DRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKILHWT 334

Query: 62  EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ--IHVRSTRGKN--ATG 117
           E+E    +++   F  +G+  VVG + G C  Y T  L+Y +   IH   +R K    TG
Sbjct: 335 ELE---YVVSTICFYPDGESIVVGMFYGLCAIYETKNLQYVSSWLIHHSPSRNKKCRVTG 391

Query: 118 RKISGIEP--MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 175
            + + I P     ++ +LV++ND+ IRLY+     L  K      V+ ++ +  S D  Y
Sbjct: 392 LQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLSRLSEDNSY 451

Query: 176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW----EGIKAHNAVVTCAVFAPCPELII 231
           I+SGS+   + +W  H       +  R R+       E  K  +  +T  + AP    + 
Sbjct: 452 IISGSDTNEVVLW--HIPNKVLINASRKRSVILHLPTETFKVCSERLTSTIIAPARTAVE 509

Query: 232 A-QMEPDKSE-STGY-VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY 288
           A + E D+S  + GY ++     +  G  P+   D I++ +N + + +    D +L   +
Sbjct: 510 AKESEHDRSLIAEGYNLVKPHSHRSYGTPPVHPID-IIIATNMAGMTIVLCVDYDLGNSH 568

Query: 289 KGYVN 293
            G+ N
Sbjct: 569 HGFRN 573

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 25/211 (11%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKT +LWH  RK  L  F H DFVT+  F P DDR+ ++G LD + RLW+I D +V+  
Sbjct: 299 MDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHRCRLWSILDNEVSYA 358

Query: 61  NEVEGQTKLITAANFC-ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV--RSTRG--KNA 115
            + +    LIT+       G++ ++G+++G      T  LK+ +  HV  +ST+G  KN+
Sbjct: 359 FDCK---DLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVSDKSTQGTTKNS 415

Query: 116 -----------TGRKISGIE----PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 160
                       G +I+G++     +    +++VT+NDS+I+++DL +      +KG+ +
Sbjct: 416 FHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEKKPLELFKGFQS 475

Query: 161 VSSQIKASF--SHDGKYIVSGSENQCIYIWK 189
            SS+ +  F    +   + +GS++   Y WK
Sbjct: 476 GSSRHRGQFLMMKNEPVVFTGSDDHWFYTWK 506

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 88.6 bits (218), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 69/324 (21%)

Query: 2    DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
            D+TVRLW I+  +CLC FQ H  +V ++ F+P D     SGS D  +RLW+I   K    
Sbjct: 1221 DQTVRLWEINSSKCLCTFQGHTSWVNSVVFNP-DGSMLASGSSDKTVRLWDISSSKCL-- 1277

Query: 61   NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK-YHT-QIHVRSTRGKNATGR 118
            +  +G T  + +  F  +G     GS D     +     K  HT Q H            
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS---------- 1327

Query: 119  KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKYIV 177
             +S +   P    +   S+D  +RL+ +        + G+ N V S I   FS DG  + 
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVI---FSPDGAILA 1384

Query: 178  SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237
            SGS +Q + +W        ++            ++ HN  V   VF+P   L+       
Sbjct: 1385 SGSGDQTVRLWSISSGKCLYT------------LQGHNNWVGSIVFSPDGTLL------- 1425

Query: 238  KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ 297
                      A+G                  S+D  +RL+++   +  C Y  + +++S 
Sbjct: 1426 ----------ASG------------------SDDQTVRLWNIS--SGECLYTLHGHINSV 1455

Query: 298  IKASFSHDGKYIVSGSENQCIYIW 321
               +FS DG  + SGS+++ I +W
Sbjct: 1456 RSVAFSSDGLILASGSDDETIKLW 1479

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
328703990	929	PREDICTED: WD repeat-containing protein	0.602	0.264	0.894	1e-136
307203415	1006	WD repeat-containing protein 44 [Harpegn	0.382	0.155	0.944	1e-135
332023075	1001	WD repeat-containing protein 44 [Acromyr	0.595	0.242	0.907	1e-134
380016247	969	PREDICTED: WD repeat-containing protein	0.384	0.162	0.944	1e-134
328783506	970	PREDICTED: WD repeat-containing protein	0.384	0.161	0.944	1e-134
350403695	971	PREDICTED: WD repeat-containing protein	0.382	0.160	0.944	1e-134
340725321	971	PREDICTED: WD repeat-containing protein	0.382	0.160	0.944	1e-134
345493186	1006	PREDICTED: WD repeat-containing protein	0.468	0.189	0.940	1e-134
383859736	970	PREDICTED: WD repeat-containing protein	0.382	0.160	0.940	1e-134
157137813	971	wd-repeat protein [Aedes aegypti] gi|108	0.578	0.243	0.919	1e-133

>gi|328703990|ref|XP_001948245.2| PREDICTED: WD repeat-containing protein 44-like [Acyrthosiphon pisum]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 221/247 (89%), Positives = 237/247 (95%), Gaps = 1/247 (0%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISR+ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 654 MDKTVRLWHISRRECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 713

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEVEGQTKLITAANFC+NGKFAVVGSYDGRCIFYTTDQL+YHTQIHVRSTRG+N+TGRKI
Sbjct: 714 NEVEGQTKLITAANFCQNGKFAVVGSYDGRCIFYTTDQLRYHTQIHVRSTRGRNSTGRKI 773

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDK+LVTSNDSRIRLYDLRDLNLSCKYKGYVN+SSQIKASFSHDGKYIV GS
Sbjct: 774 SGIEPMPGEDKVLVTSNDSRIRLYDLRDLNLSCKYKGYVNISSQIKASFSHDGKYIVCGS 833

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-S 239
           ENQCIY+WKTHHDY+KF+SVRRDRND+WEGIKAHNAVVTCA+FAP PE++  QM+ D+ S
Sbjct: 834 ENQCIYVWKTHHDYSKFTSVRRDRNDYWEGIKAHNAVVTCAIFAPNPEVVFRQMKTDENS 893

Query: 240 ESTGYVL 246
              GYV 
Sbjct: 894 GQDGYVF 900

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203415|gb|EFN82490.1| WD repeat-containing protein 44 [Harpegnathos saltator]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/235 (94%), Positives = 229/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 703 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 762

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 763 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 822

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 823 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 882

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E
Sbjct: 883 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKQIE 937

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023075|gb|EGI63340.1| WD repeat-containing protein 44 [Acromyrmex echinatior]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/248 (90%), Positives = 234/248 (94%), Gaps = 5/248 (2%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 700 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 759

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 760 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 819

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN+SSQIKASFS DG+YIVSGS
Sbjct: 820 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNISSQIKASFSPDGQYIVSGS 879

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP---- 236
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E     
Sbjct: 880 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKQIEAREQW 939

Query: 237 -DKSESTG 243
            +K ES G
Sbjct: 940 ENKEESKG 947

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016247|ref|XP_003692099.1| PREDICTED: WD repeat-containing protein 44-like [Apis florea]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/235 (94%), Positives = 229/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 667 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 726

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 727 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 786

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 787 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 846

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E
Sbjct: 847 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKQIE 901

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783506|ref|XP_392050.4| PREDICTED: WD repeat-containing protein 44-like [Apis mellifera]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/235 (94%), Positives = 229/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 668 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 727

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 728 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 787

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 788 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 847

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E
Sbjct: 848 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKQIE 902

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403695|ref|XP_003486879.1| PREDICTED: WD repeat-containing protein 44-like [Bombus impatiens]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/235 (94%), Positives = 229/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 668 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 727

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 728 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 787

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 788 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 847

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E
Sbjct: 848 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKQIE 902

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725321|ref|XP_003401020.1| PREDICTED: WD repeat-containing protein 44-like [Bombus terrestris]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/235 (94%), Positives = 229/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 668 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 727

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 728 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 787

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 788 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 847

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E
Sbjct: 848 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKQIE 902

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493186|ref|XP_001604905.2| PREDICTED: WD repeat-containing protein 44-like [Nasonia vitripennis]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 221/235 (94%), Positives = 228/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 688 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 747

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NG FAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 748 NEVDGQTKLITAANFCQNGLFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 807

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 808 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 867

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II Q+E
Sbjct: 868 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIRQIE 922

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859736|ref|XP_003705348.1| PREDICTED: WD repeat-containing protein 44-like [Megachile rotundata]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 221/235 (94%), Positives = 228/235 (97%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW
Sbjct: 667 MDKTVRLWHISRKECLCCFQHIDFVTAIVFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 726

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRCIFY TDQLKYHTQIHVRSTRGKN+TGRKI
Sbjct: 727 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNSTGRKI 786

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS DG+YIVSGS
Sbjct: 787 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSPDGQYIVSGS 846

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
           ENQCIYIWKTHHDY+KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP P+ II  +E
Sbjct: 847 ENQCIYIWKTHHDYSKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPNPDSIIKHIE 901

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137813|ref|XP_001664046.1| wd-repeat protein [Aedes aegypti] gi|108869643|gb|EAT33868.1| AAEL013866-PA [Aedes aegypti]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 218/237 (91%), Positives = 227/237 (95%), Gaps = 1/237 (0%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           MDKTVRLWHISRKECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct: 676 MDKTVRLWHISRKECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 735

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           NEV+GQTKLITAANFC+NGKFAVVGSYDGRC+FY TDQLKYHTQIHVRSTRGKNA GRKI
Sbjct: 736 NEVDGQTKLITAANFCQNGKFAVVGSYDGRCLFYNTDQLKYHTQIHVRSTRGKNAIGRKI 795

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY+NVSSQIKASFSHDGKYI+SGS
Sbjct: 796 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYLNVSSQIKASFSHDGKYIISGS 855

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237
           ENQ IYIWKTHHDYAK SSVRRDR+DFWEGIKAHNA VTCA+FAP PE II + EPD
Sbjct: 856 ENQMIYIWKTHHDYAKLSSVRRDRSDFWEGIKAHNATVTCAIFAPHPEAII-KPEPD 911

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
UNIPROTKB|Q9XSC3	912	WDR44 "WD repeat-containing pr	0.644	0.288	0.752	3.7e-116
UNIPROTKB|Q5JSH3	913	WDR44 "WD repeat-containing pr	0.691	0.308	0.711	1.6e-115
MGI|MGI:1919654	915	Wdr44 "WD repeat domain 44" [M	0.683	0.304	0.700	5.4e-115
RGD|727965	908	Wdr44 "WD repeat domain 44" [R	0.588	0.264	0.809	4.3e-111
WB|WBGene00006369	1043	sym-4 [Caenorhabditis elegans	0.710	0.278	0.541	1.7e-86
POMBASE|SPAC3H5.08c	933	SPAC3H5.08c "WD repeat protein	0.531	0.232	0.482	1.8e-57
ASPGD|ASPL0000061877	947	srgL [Emericella nidulans (tax	0.526	0.227	0.519	7.9e-57
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.487	0.225	0.447	1e-43
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.580	0.287	0.388	2.5e-41
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.715	0.323	0.333	2.7e-37

UNIPROTKB|Q9XSC3 WDR44 "WD repeat-containing protein 44" [Bos taurus (taxid:9913)]

 Score = 1094 (390.2 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
 Identities = 204/271 (75%), Positives = 233/271 (85%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct:   625 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 684

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct:   685 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 744

Query:   121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
             +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct:   745 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYLVSGS 804

Query:   181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA-QMEPDKS 239
             E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++  ++ +KS
Sbjct:   805 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKS 864

Query:   240 ESTGYVLNATGRKISGIEPMPGEDKILVTSN 270
             E      N  G     +E MP    I+ T N
Sbjct:   865 EG-----NEKGEDAEVLETMPSG--IMKTDN 888

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q5JSH3 WDR44 "WD repeat-containing protein 44" [Homo sapiens (taxid:9606)]

 Score = 1089 (388.4 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
 Identities = 207/291 (71%), Positives = 242/291 (83%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct:   626 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 685

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct:   686 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 745

Query:   121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
             +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct:   746 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGS 805

Query:   181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA-QMEPDKS 239
             E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++  ++ +KS
Sbjct:   806 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKS 865

Query:   240 EST-----GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS 285
             E         VL+AT    SGI      + +L       I+++  +  N+S
Sbjct:   866 EGNEKSEDAEVLDATP---SGIMKTDNTEVLLSADFTGAIKVFVNKRKNVS 913

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:1919654 Wdr44 "WD repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 1083 (386.3 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
 Identities = 206/294 (70%), Positives = 240/294 (81%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct:   628 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 687

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct:   688 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 747

Query:   121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
             +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct:   748 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGS 807

Query:   181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240
             E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++        
Sbjct:   808 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLS-------- 859

Query:   241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 294
                  L+    K+ GI+    ED  ++ S  + I   D  ++ LS  + G + V
Sbjct:   860 -----LDVQSEKLEGIDKY--EDAEVLDSTSTGIVKTDNTEVLLSADFTGAIKV 906

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030334 "regulation of cell migration" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|727965 Wdr44 "WD repeat domain 44" [Rattus norvegicus (taxid:10116)]

 Score = 1079 (384.9 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
 Identities = 195/241 (80%), Positives = 222/241 (92%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLWHISR+ECLCCFQHIDFVTAI FHPRDDRYFLSGSLDGKLRLWNIPDKKVA+W
Sbjct:   621 MDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALW 680

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             NEV+GQTKLITAANFC+NGK+AV+G+YDGRCIFY T+ LKYHTQIHVRSTRG+N  GRKI
Sbjct:   681 NEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKI 740

Query:   121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
             +GIEP+PGE+KILVTSNDSRIRLYDLRDL+LS KYKGYVN SSQIKASFSHD  Y+VSGS
Sbjct:   741 TGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGS 800

Query:   181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA-QMEPDKS 239
             E++ +YIW T+HD +KF+SVRRDRNDFWEGIKAHNAVVT A+FAP P L+++  ++ +K 
Sbjct:   801 EDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDVQSEKL 860

Query:   240 E 240
             E
Sbjct:   861 E 861

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0010008 "endosome membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:0030334 "regulation of cell migration" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

WB|WBGene00006369 sym-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 816 (292.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
 Identities = 164/303 (54%), Positives = 216/303 (71%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MD+TV+LWH+SR ECLCCFQHIDFVT + F P+DDRYFLSGSLDGKLR+W+IPDKKVAVW
Sbjct:   736 MDRTVKLWHLSRNECLCCFQHIDFVTCVAFLPKDDRYFLSGSLDGKLRMWHIPDKKVAVW 795

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             N+ E   K ITA  F ++GKFAVVG+YDG+CIFYT+DQLKYHT + VRSTRGKNA G K+
Sbjct:   796 NDTE--KKYITAMTFVKSGKFAVVGTYDGKCIFYTSDQLKYHTAVDVRSTRGKNARGHKV 853

Query:   121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
             +G+    G DK+LVTSNDSRIR+YD+RD  L+CK+KG  N  SQI+A+FS DG++I+ GS
Sbjct:   854 TGLTSH-G-DKLLVTSNDSRIRMYDIRDKALTCKFKGVQNDHSQIRAAFSPDGRHIICGS 911

Query:   181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP-DK- 238
             E++ +YIW+   D     SVR+DRN +WE ++ HNA V  AVFAP P++    +   DK 
Sbjct:   912 EDKFVYIWRAS-DTTVALSVRKDRNSWWERVRTHNAPVPVAVFAPRPQVFFNMLNKRDKH 970

Query:   239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI 298
             S+S     N     ISG + +PG+   L ++ +  I  + +   +L+   K  +N    +
Sbjct:   971 SKSDSIDFN-----ISG-QVLPGQSDSLTSNGNLSIPGHVIISADLNGVIKVMINRPRLV 1024

Query:   299 KAS 301
             KA+
Sbjct:  1025 KAN 1027

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

POMBASE|SPAC3H5.08c SPAC3H5.08c "WD repeat protein, human WDR44 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 576 (207.8 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
 Identities = 112/232 (48%), Positives = 156/232 (67%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKT RLWH  RK+CLCCF+H DFVT+I FHP+DDR+FLSGSLD KLRLW+I +K V+ W
Sbjct:   406 MDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFW 465

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             NE+    +LITA  F  +G  A+ G++ G C+FY T  L++ TQ+ +RS+RGKNA G K+
Sbjct:   466 NELP---ELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKV 522

Query:   121 SGIEP-------MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG 173
             +GI+        + G+ ++LVT+NDSRIR+Y+LRD +L  K+KG+ N  SQ +A F  DG
Sbjct:   523 TGIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDG 582

Query:   174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225
              Y++ GSE+  ++IW     +     + + +    E  KA    +T AVFAP
Sbjct:   583 NYVICGSEDHQVFIWDLPPQH-----MHKTKKKKHEHFKASVRPITAAVFAP 629

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0044732 "mitotic spindle pole body" evidence=IDA

ASPGD|ASPL0000061877 srgL [Emericella nidulans (taxid:162425)]

 Score = 569 (205.4 bits), Expect = 7.9e-57, Sum P(2) = 7.9e-57
 Identities = 121/233 (51%), Positives = 156/233 (66%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLWH+SR ECLCCF+H DFVT+I FHPRDDR+FL+GSLD KLRLW+IPDK VA +
Sbjct:   380 MDKTVRLWHVSRPECLCCFKHSDFVTSIQFHPRDDRFFLAGSLDMKLRLWSIPDKSVA-F 438

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             N       +IT+ +F  +G+ ++ G  +G    Y TD LK    IHVRS RG+NA G KI
Sbjct:   439 NVTVPD--MITSVSFTPDGRHSMAGCLNGMLNIYETDGLKPAGNIHVRSARGRNAKGSKI 496

Query:   121 SGIEPM--PGED-----KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG 173
             +GI+ M  P  D     K+LVTSNDSRIRLYD RD +L  K++G  N  SQI+ASFS DG
Sbjct:   497 TGIDSMVLPQNDPEGTVKLLVTSNDSRIRLYDFRDRSLEAKFRGNENACSQIRASFSDDG 556

Query:   174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND-FWEGIKAHNAVVTCAVFAP 225
             K+++ GSE++  YIW           V +D +   +E +   +A+VT A+ AP
Sbjct:   557 KHVICGSEDRRAYIWP-------MGPVEKDADKRAFEVLDTQSAMVTAAIMAP 602

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
 Identities = 93/208 (44%), Positives = 143/208 (68%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLW++S + CL  F H D+VT I F+P DDRYF+SGSLD K+R+W+IPD++V  W
Sbjct:   532 MDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVDW 591

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT--DQLKYHTQIHVRSTRGKNATGR 118
              ++    +++T+A +  +G+  +VGSY G C  Y+   ++L+  +QI++++ + K A  +
Sbjct:   592 YDLH---EMVTSACYTPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNKK-KKAHQK 647

Query:   119 KISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177
             KI+G + +PG   ++LVTS+DSRIR+ D  DL ++ K KG+ N SSQI AS + DGKY+V
Sbjct:   648 KITGFQFVPGSSSEVLVTSSDSRIRVVDGTDL-VN-KLKGFRNTSSQISASITADGKYVV 705

Query:   178 SGSENQCIYIWKTHHDYAKFSSVRRDRN 205
             S SE+  +YIWK     ++ S    ++N
Sbjct:   706 SASEDSHVYIWKYESPASRPSRSNNNKN 733

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 97/250 (38%), Positives = 148/250 (59%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLW +S K CL  F H D+VT I F+P DD YF+SGSLD K+R+W+IPD +V  W
Sbjct:   487 MDKTVRLWDLSSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDW 546

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT--DQLKYHTQIHVRSTRGKNATGR 118
             N++    +++TAA +  +G+ A+VGSY G C  Y T  ++L+   +I++++ R K    +
Sbjct:   547 NDLH---EMVTAACYTPDGQGALVGSYKGTCCLYNTHDNKLQQRREINLKN-RKKKTHHK 602

Query:   119 KISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177
             KI+G + + G   ++LVTS DSR R+ D   ++L  K+KG+ N +SQI AS + +GK++V
Sbjct:   603 KITGFQFVAGSSSEVLVTSADSRTRVVD--GVDLVHKFKGFRNTNSQISASLTSNGKFLV 660

Query:   178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237
             S SE+  +Y+W    D     S R    + +E     +     +V AP P  I      +
Sbjct:   661 SASEDSNVYVWNYDSDSRAGRSKRVTVTNSYENFYCRDV----SVAAPWPGKISNNHTNN 716

Query:   238 KSESTGYVLN 247
               E + +  N
Sbjct:   717 SPEQSSFTAN 726

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 108/324 (33%), Positives = 168/324 (51%)

Query:     1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
             MDKTVRLW I  K CL  F H D+VT I F P D+ YFLSGSLD K+R+W+I D+ V  W
Sbjct:   525 MDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEW 584

Query:    61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH--TQIHVRSTRGKNATGR 118
             +++    +++TAA +  +G+ A++GS+ G C  Y T+  K     QI V+S + K+   R
Sbjct:   585 SDLH---EMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNK-KSQAKR 640

Query:   119 KISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177
             KI+  +  P    ++LVTS DSRIR+ D  ++    K+KG+ N  SQ+ AS+S DGKYI+
Sbjct:   641 KITSFQFSPVNPSEVLVTSADSRIRILDGSEV--IHKFKGFRNTCSQLSASYSQDGKYII 698

Query:   178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDF----------WEG--------IKAHNAVVT 219
               SE+  +Y+WK      + +   +    F          W G        ++ H+   +
Sbjct:   699 CASEDSQVYLWKNDFHRTRSTLTTQSHEHFHCKDVSAAVPWHGHVRGEPPPVQIHSKRHS 758

Query:   220 CAVFAPC-PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD 278
               +     P   I+    +++ +TG   +   +K SG+ PMP   K   T +  +     
Sbjct:   759 KRISTSSQPSSTISSPTKEETSATGPTTSNRNKK-SGLPPMP---KKAATKSQIQPEEEA 814

Query:   279 LRDLNLSCKYKGYVNVSSQIKASF 302
               +L  S  ++  +N S Q  + F
Sbjct:   815 GPELGSSESFRSSMNSSEQHSSRF 838

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NVE8	WDR44_MOUSE	No assigned EC number	0.7006	0.6838	0.3049	yes	N/A
Q9XSC3	WDR44_BOVIN	No assigned EC number	0.7050	0.6813	0.3048	yes	N/A
Q9R037	WDR44_RAT	No assigned EC number	0.7034	0.6740	0.3028	yes	N/A
Q5JSH3	WDR44_HUMAN	No assigned EC number	0.7006	0.6838	0.3055	yes	N/A
Q6LA54	YF48_SCHPO	No assigned EC number	0.5282	0.4534	0.1982	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	408
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  103 bits (259), Expect = 3e-25
 Identities = 70/325 (21%), Positives = 119/325 (36%), Gaps = 69/325 (21%)

Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           D T+++W +   E L   + H   V  +     D  Y  SGS D  +RLW++   +    
Sbjct: 30  DGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECV-- 86

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
             + G T  +++  F  +G+     S D     +  +  K      + + RG       +
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----LTTLRGHTDWVNSV 141

Query: 121 SGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVS 178
           +       +   + + S D  I+L+DLR         G    V+S    +FS DG+ ++S
Sbjct: 142 A----FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS---VAFSPDGEKLLS 194

Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK 238
            S +  I +W    D +    +          ++ H   V    F+P   L+ +      
Sbjct: 195 SSSDGTIKLW----DLSTGKCLGT--------LRGHENGVNSVAFSPDGYLLAS------ 236

Query: 239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQ 297
                                         S D  IR++DLR         G+ N V+S 
Sbjct: 237 -----------------------------GSEDGTIRVWDLRTGECVQTLSGHTNSVTS- 266

Query: 298 IKASFSHDGKYIVSGSENQCIYIWK 322
              ++S DGK + SGS +  I IW 
Sbjct: 267 --LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (250), Expect = 6e-24
 Identities = 76/378 (20%), Positives = 130/378 (34%), Gaps = 104/378 (27%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
           H   VT + F P D +   +GS DG +++W++   ++     ++G T  +       +G 
Sbjct: 8   HTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGT 64

Query: 81  FAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS 139
           +   GS D     +  +  +   T     S          +S +   P    +  +S D 
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSY---------VSSVAFSPDGRILSSSSRDK 115

Query: 140 RIRLYDLRDLNLSCKY-----KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY 194
            I+++D+      C         +VN       +FS DG ++ S S++  I +W    D 
Sbjct: 116 TIKVWDVETGK--CLTTLRGHTDWVNS-----VAFSPDGTFVASSSQDGTIKLW----DL 164

Query: 195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS 254
                V          +  H   V    F                               
Sbjct: 165 RTGKCVAT--------LTGHTGEVNSVAF------------------------------- 185

Query: 255 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGS 313
                P  +K+L +S+D  I+L+DL         +G+ N V+S    +FS DG  + SGS
Sbjct: 186 ----SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLLASGS 238

Query: 314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 373
           E+  I +W    D      V+         +  H   VT   ++P               
Sbjct: 239 EDGTIRVW----DLRTGECVQT--------LSGHTNSVTSLAWSP--------------- 271

Query: 374 STGYVLVSADFNGVIRVF 391
             G  L S   +G IR++
Sbjct: 272 -DGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.0 bits (242), Expect = 9e-23
 Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 1   MDKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VA 58
            DKT+RLW +   EC+     H  +V+++ F P D R   S S D  +++W++   K + 
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLT 129

Query: 59  VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
                 G T  + +  F  +G F    S DG    +     K               TG 
Sbjct: 130 TLR---GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK----------CVATLTGH 176

Query: 119 K--ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKY 175
              ++ +   P  +K+L +S+D  I+L+DL         +G+ N V+S    +FS DG  
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYL 233

Query: 176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225
           + SGSE+  I +W    D      V+         +  H   VT   ++P
Sbjct: 234 LASGSEDGTIRVW----DLRTGECVQT--------LSGHTNSVTSLAWSP 271

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.1 bits (227), Expect = 3e-20
 Identities = 75/335 (22%), Positives = 126/335 (37%), Gaps = 35/335 (10%)

Query: 1   MDKTVRLWHIS--RKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA 58
           +D TV+LW +S   K       H + VT++ F P         SLDG ++LW++   K  
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 59  VWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQLK-YHTQIHVRSTRGKNAT 116
               + G T  +++  F  +G   +   S DG    +     K   + +   S    ++ 
Sbjct: 192 ST--LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 117 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI 176
                     P    +   S+D  IRL+DLR  + S       + SS +  +FS DGK +
Sbjct: 250 ---------SPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP 236
            SGS +  + +W           +   +      +K H   V+   F+P   L+++    
Sbjct: 300 ASGSSDGTVRLW----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 237 DK-------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK 289
           D                      +  +   P    +   S D  +RL+DL   +L     
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 290 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH 324
           G+ +        FS DGK + SGS +  I +W   
Sbjct: 410 GHTSRV--TSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.0 bits (206), Expect = 1e-17
 Identities = 78/343 (22%), Positives = 126/343 (36%), Gaps = 42/343 (12%)

Query: 1   MDKTVRLWHISRKECLCC---FQHIDFVTAICFHPRDDRYFLS--GSLDGKLRLWNIPDK 55
            D T++LW +   E L       H   V+ +     D    L    SLDG ++LW+    
Sbjct: 85  SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD-LST 143

Query: 56  KVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKN 114
              +   +EG ++ +T+  F  +GK    GS  DG    +     K              
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------PLSTLA 195

Query: 115 ATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG 173
                +S +   P G   I   S+D  IRL+DL               S  + +SFS DG
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSVVSSFSPDG 253

Query: 174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ 233
             + SGS +  I +W      +   ++             H++ V    F+P  +L+ + 
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSG-----------HSSSVLSVAFSPDGKLLASG 302

Query: 234 ME---------PDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLN 283
                            +   L      +S +   P    ++   S+D  IRL+DLR   
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362

Query: 284 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD 326
                +G+ NV S    SFS DG+ + SGS +  + +W     
Sbjct: 363 PLKTLEGHSNVLS---VSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 3e-10
 Identities = 60/317 (18%), Positives = 107/317 (33%), Gaps = 37/317 (11%)

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
                  K         +     +GS +   +            +   S+         I
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALL-SDSLVSLPDLSSLLLRGHEDSI 68

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVS- 178
           + I   P  + +L  S+D  I+L+DL +   L    +G  + S    A  S DG  I+  
Sbjct: 69  TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128

Query: 179 -GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD 237
             S +  + +W         S+  +         + H+  VT   F+P  +L+ +    D
Sbjct: 129 SSSLDGTVKLWD-------LSTPGKLIRTL----EGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 238 --------KSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKY 288
                   ++      L      +S +   P G   I   S+D  IRL+DL         
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLR 235

Query: 289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN 348
                 S  + +SFS DG  + SGS +  I +W      +   ++             H+
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-----------HS 284

Query: 349 AVVTCAVFAPCPELIIA 365
           + V    F+P  +L+ +
Sbjct: 285 SSVLSVAFSPDGKLLAS 301

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 13 KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN 51
           E L   + H   VT++ F P D +Y  SGS DG ++LW+
Sbjct: 2  GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN 51
          H   VT++ F P D     SGS DG +R+W+
Sbjct: 10 HTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 67/182 (36%)

Query: 211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN 270
           +K H   VTC  F+P  +L+                 ATG                  S 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLL-----------------ATG------------------SG 29

Query: 271 DSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 329
           D  I+++DL    L    KG    V      + S DG Y+ SGS ++ I +W    D   
Sbjct: 30  DGTIKVWDLETGELLRTLKGHTGPVR---DVAASADGTYLASGSSDKTIRLW----DLET 82

Query: 330 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR 389
              VR         +  H + V+   F+P                 G +L S+  +  I+
Sbjct: 83  GECVRT--------LTGHTSYVSSVAFSP----------------DGRILSSSSRDKTIK 118

Query: 390 VF 391
           V+
Sbjct: 119 VW 120

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0315|consensus	311		100.0
KOG0318|consensus	603		100.0
KOG0319|consensus	775		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		100.0
KOG0282|consensus	503		100.0
KOG0293|consensus	519		100.0
KOG0295|consensus	406		100.0
KOG0296|consensus	399		100.0
KOG0279|consensus	315		100.0
KOG0273|consensus	524		100.0
KOG0284|consensus	464		100.0
KOG0265|consensus	338		100.0
KOG0645|consensus	312		100.0
KOG0319|consensus	775		100.0
KOG0286|consensus	343		100.0
KOG0263|consensus	707		100.0
KOG0306|consensus	888		100.0
KOG0318|consensus	603		100.0
KOG0291|consensus	893		100.0
KOG0273|consensus	524		100.0
KOG0291|consensus	893		100.0
KOG0285|consensus	460		100.0
KOG0266|consensus	456		100.0
KOG0316|consensus	307		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281|consensus	499		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295|consensus	406		100.0
KOG0306|consensus	888		100.0
KOG0284|consensus	464		100.0
KOG0643|consensus	327		100.0
KOG0276|consensus	794		100.0
KOG0645|consensus	312		100.0
KOG0263|consensus	707		100.0
KOG0292|consensus	1202		100.0
KOG0285|consensus	460		100.0
KOG0278|consensus	334		100.0
KOG0281|consensus	499		100.0
KOG1407|consensus	313		100.0
KOG0266|consensus	456		100.0
KOG0316|consensus	307		100.0
KOG0313|consensus	423		100.0
KOG1446|consensus	311		100.0
KOG0275|consensus	508		100.0
KOG0296|consensus	399		100.0
KOG0276|consensus	794		100.0
KOG0283|consensus	712		100.0
KOG0282|consensus	503		100.0
KOG0292|consensus	1202		100.0
KOG0277|consensus	311		100.0
KOG0640|consensus	430		100.0
KOG0313|consensus	423		100.0
KOG0288|consensus	459		100.0
KOG1408|consensus	1080		100.0
KOG0772|consensus	641		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265|consensus	338		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0289|consensus	506		100.0
KOG1539|consensus	910		100.0
KOG0293|consensus	519		100.0
KOG0641|consensus	350		100.0
KOG0973|consensus	942		100.0
KOG0305|consensus	484		100.0
KOG0277|consensus	311		100.0
KOG0300|consensus	481		100.0
KOG0268|consensus	433		100.0
KOG0647|consensus	347		100.0
KOG1539|consensus	910		100.0
KOG1407|consensus	313		100.0
KOG2096|consensus	420		100.0
KOG0275|consensus	508		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0274|consensus	537		100.0
KOG0305|consensus	484		100.0
KOG0310|consensus	487		100.0
KOG0283|consensus	712		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG2106|consensus	626		100.0
KOG1063|consensus	764		100.0
KOG0274|consensus	537		100.0
KOG1408|consensus	1080		100.0
KOG0278|consensus	334		100.0
KOG0299|consensus	479		100.0
KOG0288|consensus	459		100.0
KOG2048|consensus	691		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG1332|consensus	299		100.0
KOG0294|consensus	362		100.0
KOG1036|consensus	323		100.0
KOG0973|consensus	942		100.0
KOG2106|consensus	626		100.0
KOG0301|consensus	745		100.0
KOG0640|consensus	430		99.98
KOG2055|consensus	514		99.98
KOG1446|consensus	311		99.98
KOG4283|consensus	397		99.98
KOG0294|consensus	362		99.98
KOG0289|consensus	506		99.98
KOG0646|consensus	476		99.98
KOG0268|consensus	433		99.98
KOG1036|consensus	323		99.98
KOG0310|consensus	487		99.98
KOG0308|consensus	735		99.97
KOG1273|consensus	405		99.97
KOG0639|consensus	705		99.97
KOG0643|consensus	327		99.97
KOG0264|consensus	422		99.97
KOG0772|consensus	641		99.97
KOG0308|consensus	735		99.97
KOG2048|consensus	691		99.97
PTZ00420	568	coronin; Provisional	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0647|consensus	347		99.97
KOG0299|consensus	479		99.97
KOG1274|consensus	933		99.97
KOG2055|consensus	514		99.97
KOG0646|consensus	476		99.97
KOG1063|consensus	764		99.97
KOG0264|consensus	422		99.97
KOG0321|consensus	720		99.96
KOG0639|consensus	705		99.96
KOG0641|consensus	350		99.96
KOG1332|consensus	299		99.96
KOG0300|consensus	481		99.96
KOG2445|consensus	361		99.96
KOG0650|consensus	733		99.96
KOG4328|consensus	498		99.96
KOG0301|consensus	745		99.96
KOG0321|consensus	720		99.95
KOG1445|consensus	1012		99.95
KOG0269|consensus	839		99.95
KOG0267|consensus	825		99.95
KOG4378|consensus	673		99.95
KOG4283|consensus	397		99.94
KOG0269|consensus	839		99.94
KOG1274|consensus	933		99.94
KOG2919|consensus	406		99.94
KOG2096|consensus	420		99.94
KOG0267|consensus	825		99.93
KOG1538|consensus	1081		99.93
KOG1009|consensus	434		99.93
KOG1034|consensus	385		99.93
KOG1273|consensus	405		99.93
KOG4328|consensus	498		99.93
KOG4227|consensus	609		99.93
KOG0302|consensus	440		99.93
KOG0307|consensus	1049		99.92
KOG0307|consensus	1049		99.92
KOG1188|consensus	376		99.92
KOG1007|consensus	370		99.92
KOG0270|consensus	463		99.92
KOG1963|consensus	792		99.92
KOG1034|consensus	385		99.92
KOG0302|consensus	440		99.92
KOG1009|consensus	434		99.92
KOG1445|consensus	1012		99.92
PRK11028	330	6-phosphogluconolactonase; Provisional	99.92
KOG0650|consensus	733		99.91
KOG0270|consensus	463		99.91
PRK11028	330	6-phosphogluconolactonase; Provisional	99.91
KOG1587|consensus	555		99.91
KOG0642|consensus	577		99.91
KOG1240|consensus	1431		99.91
KOG4378|consensus	673		99.9
KOG0322|consensus	323		99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG2919|consensus	406		99.9
KOG2445|consensus	361		99.9
KOG1007|consensus	370		99.9
KOG1963|consensus	792		99.9
KOG2110|consensus	391		99.89
KOG0649|consensus	325		99.89
KOG1517|consensus	1387		99.89
KOG1538|consensus	1081		99.89
KOG0290|consensus	364		99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG1587|consensus	555		99.89
KOG2394|consensus	636		99.88
KOG1334|consensus	559		99.88
KOG1310|consensus	758		99.88
KOG1188|consensus	376		99.88
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.88
KOG0303|consensus	472		99.87
KOG1523|consensus	361		99.87
KOG0642|consensus	577		99.87
KOG2110|consensus	391		99.86
KOG0322|consensus	323		99.86
KOG0644|consensus	1113		99.86
KOG4497|consensus	447		99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG4497|consensus	447		99.85
KOG4227|consensus	609		99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG2111|consensus	346		99.84
KOG1524|consensus	737		99.84
KOG1517|consensus	1387		99.84
KOG0290|consensus	364		99.84
KOG0771|consensus	398		99.83
KOG0303|consensus	472		99.82
KOG0649|consensus	325		99.82
KOG0771|consensus	398		99.82
KOG1524|consensus	737		99.81
KOG2139|consensus	445		99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG2139|consensus	445		99.79
KOG0644|consensus	1113		99.78
KOG1334|consensus	559		99.78
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.78
KOG2111|consensus	346		99.77
KOG1523|consensus	361		99.77
KOG2321|consensus	703		99.77
KOG1240|consensus	1431		99.76
PRK04922	433	tolB translocation protein TolB; Provisional	99.76
KOG1272|consensus	545		99.76
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
KOG1310|consensus	758		99.75
PRK02889	427	tolB translocation protein TolB; Provisional	99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.74
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.74
PRK05137	435	tolB translocation protein TolB; Provisional	99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG3881|consensus	412		99.72
KOG3881|consensus	412		99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
KOG1272|consensus	545		99.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.71
KOG2394|consensus	636		99.71
KOG2315|consensus	566		99.7
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.69
KOG1354|consensus	433		99.69
KOG0974|consensus	967		99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.67
KOG2315|consensus	566		99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
PRK00178	430	tolB translocation protein TolB; Provisional	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1409|consensus	404		99.65
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.65
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.64
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.64
KOG2314|consensus	698		99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.63
KOG1354|consensus	433		99.63
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.63
KOG0974|consensus	967		99.63
KOG2041|consensus	1189		99.62
PRK04792	448	tolB translocation protein TolB; Provisional	99.61
PRK00178	430	tolB translocation protein TolB; Provisional	99.61
KOG2321|consensus	703		99.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
PRK01029	428	tolB translocation protein TolB; Provisional	99.58
PRK01029	428	tolB translocation protein TolB; Provisional	99.57
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.55
KOG0280|consensus	339		99.55
KOG2314|consensus	698		99.53
COG4946	668	Uncharacterized protein related to the periplasmic	99.52
COG4946	668	Uncharacterized protein related to the periplasmic	99.52
KOG1409|consensus	404		99.5
KOG4547|consensus	541		99.48
KOG1912|consensus	1062		99.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
KOG1912|consensus	1062		99.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.42
KOG4547|consensus	541		99.41
KOG0309|consensus	1081		99.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.4
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.39
KOG4532|consensus	344		99.38
KOG1064|consensus	2439		99.37
KOG4190|consensus	1034		99.37
KOG1064|consensus	2439		99.36
KOG0280|consensus	339		99.3
KOG3914|consensus	390		99.29
KOG2041|consensus	1189		99.29
PRK04043	419	tolB translocation protein TolB; Provisional	99.28
KOG4190|consensus	1034		99.27
KOG0882|consensus	558		99.27
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.26
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.25
PRK04043	419	tolB translocation protein TolB; Provisional	99.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.23
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.19
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.17
KOG3914|consensus	390		99.15
KOG4714|consensus	319		99.15
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.15
KOG4532|consensus	344		99.14
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	99.11
KOG2695|consensus	425		99.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.04
KOG2695|consensus	425		99.03
KOG4649|consensus	354		99.02
KOG1832|consensus	1516		99.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.0
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.0
KOG1645|consensus	463		99.0
KOG4714|consensus	319		98.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG2066|consensus	846		98.97
KOG3617|consensus	1416		98.95
KOG0309|consensus	1081		98.95
KOG1920|consensus	1265		98.93
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.92
KOG0882|consensus	558		98.9
KOG2114|consensus	933		98.87
PRK02888	635	nitrous-oxide reductase; Validated	98.81
KOG1920|consensus	1265		98.79
KOG1645|consensus	463		98.74
KOG1275|consensus	1118		98.74
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.72
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.72
KOG1832|consensus	1516		98.72
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.69
KOG2066|consensus	846		98.68
KOG3617|consensus	1416		98.67
KOG3621|consensus	726		98.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.63
KOG1275|consensus	1118		98.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.53
KOG2114|consensus	933		98.52
KOG4649|consensus	354		98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.49
KOG1008|consensus	783		98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.43
KOG1897|consensus	1096		98.37
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.34
COG3391	381	Uncharacterized conserved protein [Function unknow	98.31
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.26
KOG1008|consensus	783		98.26
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.23
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.22
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.21
KOG3621|consensus	726		98.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.16
KOG1897|consensus	1096		98.16
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.15
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.09
COG3391	381	Uncharacterized conserved protein [Function unknow	98.06
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.05
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.95
KOG2444|consensus	238		97.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.94
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.92
KOG4640|consensus	665		97.92
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.91
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.9
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.9
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.87
KOG4640|consensus	665		97.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.84
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.84
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.73
PRK13616	591	lipoprotein LpqB; Provisional	97.64
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.61
PRK13616	591	lipoprotein LpqB; Provisional	97.56
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.54
PHA02713	557	hypothetical protein; Provisional	97.53
KOG4441|consensus	571		97.5
PHA02713	557	hypothetical protein; Provisional	97.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.35
KOG4441|consensus	571		97.34
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.3
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.29
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.27
KOG2395|consensus	644		97.27
KOG2079|consensus	1206		97.26
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.2
KOG2079|consensus	1206		97.17
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.11
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.03
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.93
KOG2395|consensus	644		96.89
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.86
KOG4499|consensus	310		96.79
KOG4499|consensus	310		96.72
PHA03098	534	kelch-like protein; Provisional	96.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.65
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.63
KOG2444|consensus	238		96.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.55
PHA03098	534	kelch-like protein; Provisional	96.35
KOG3630|consensus	1405		96.2
COG5167	776	VID27 Protein involved in vacuole import and degra	96.12
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.03
PHA02790	480	Kelch-like protein; Provisional	96.03
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.95
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.89
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.89
KOG3630|consensus	1405		95.85
KOG2280|consensus	829		95.8
PRK13684	334	Ycf48-like protein; Provisional	95.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.72
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.7
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.69
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.62
PHA02790	480	Kelch-like protein; Provisional	95.54
PRK10115	686	protease 2; Provisional	95.51
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.51
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.51
KOG1916|consensus	1283		95.46
COG5167	776	VID27 Protein involved in vacuole import and degra	95.45
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.27
COG5276	370	Uncharacterized conserved protein [Function unknow	95.26
KOG2377|consensus	657		95.14
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.11
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.04
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.95
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.92
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.91
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.83
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.82
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.82
KOG1983|consensus	993		94.74
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.33
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.22
KOG2280|consensus	829		94.14
KOG1898|consensus	1205		94.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.81
COG4590	733	ABC-type uncharacterized transport system, permeas	93.71
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.51
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.49
KOG4460|consensus	741		93.25
KOG1916|consensus	1283		93.25
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.12
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.09
KOG4460|consensus	741		92.98
KOG1900|consensus	1311		92.85
KOG2247|consensus	615		92.81
PRK10115	686	protease 2; Provisional	92.56
KOG2377|consensus	657		92.56
COG3292	671	Predicted periplasmic ligand-binding sensor domain	92.4
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.3
COG4590	733	ABC-type uncharacterized transport system, permeas	91.61
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.49
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.38
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.3
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.24
PRK13684	334	Ycf48-like protein; Provisional	91.13
KOG2247|consensus	615		91.08
PLN02193	470	nitrile-specifier protein	90.98
KOG1900|consensus	1311		90.97
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.47
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.99
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.89
COG5276	370	Uncharacterized conserved protein [Function unknow	89.49
KOG1983|consensus	993		89.24
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.86
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.85
PLN02153	341	epithiospecifier protein	88.63
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	88.45
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.41
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.96
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.86
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.66
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.37
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.34
KOG4659|consensus	1899		87.02
KOG1898|consensus	1205		86.65
KOG3616|consensus	1636		86.45
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.92
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	85.44
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.42
KOG1896|consensus	1366		85.2
PLN02153	341	epithiospecifier protein	84.51

>KOG0271|consensus

Probab=100.00  E-value=8.1e-58  Score=353.28  Aligned_cols=318  Identities=19%  Similarity=0.330  Sum_probs=280.5

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +|.++|.|+.|+| ++..||+|+.|.++++||+.+....  .+.++|...|.|++|+|||+.||+|+.||+|++||..++
T Consensus       113 GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~--~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  113 GHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPL--FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             CCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcc--eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            3999999999999 9999999999999999999998776  799999999999999999999999999999999999988


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCC-----CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMP-----GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      ++...       ...+|...|++++|.|     ..++|++++.||.++|||+..+.++..+.+|...  ++|+.|--+| 
T Consensus       190 ~~~g~-------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG~g-  259 (480)
T KOG0271|consen  190 QQIGR-------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGGEG-  259 (480)
T ss_pred             Ccccc-------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcCCc-
Confidence            65432       2356778999999976     5678999999999999999999999999998876  8899997665 


Q ss_pred             EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC-----------cc---------------
Q psy988          175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC-----------PE---------------  228 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~---------------  228 (408)
                      +|++|+.|++|++|+...            +.+.+.+++|...|+.++++.+           ++               
T Consensus       260 liySgS~DrtIkvw~a~d------------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  260 LIYSGSQDRTIKVWRALD------------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             eEEecCCCceEEEEEccc------------hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            899999999999999854            4567888999999998887732           22               


Q ss_pred             ----------eeeee--------cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          229 ----------LIIAQ--------MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       229 ----------~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                                .++.+        +.+...........+|..-|..+.||||++++++++.|..|++||.++|+.+.+|.+
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence                      23333        222334455566778889999999999999999999999999999999999999999


Q ss_pred             ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988          291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                      |..  .|..++|+.|.++|++|+.|.++++|++++.            ++...+.+|.+.|.++.|+|            
T Consensus       408 Hv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk------------Kl~~DLpGh~DEVf~vDwsp------------  461 (480)
T KOG0271|consen  408 HVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTK------------KLKQDLPGHADEVFAVDWSP------------  461 (480)
T ss_pred             ccc--eeEEEEeccCccEEEEcCCCceEEEEEeeee------------eecccCCCCCceEEEEEecC------------
Confidence            877  8899999999999999999999999999987            67788999999999999999            


Q ss_pred             CCCCcccEEEEEecCCeEEEEe
Q psy988          371 KSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       371 ~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                          ||..+++|+.|..+++|.
T Consensus       462 ----DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  462 ----DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ----CCceeecCCCceEEEeec
Confidence                999999999999999995

>KOG0271|consensus

Probab=100.00  E-value=4.3e-51  Score=316.12  Aligned_cols=297  Identities=22%  Similarity=0.379  Sum_probs=260.1

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec---
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE---   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~---   77 (408)
                      |.++++||+.+..++.+.+ |...|.|++|+| |++.||+|+.||+|++||.++++..- ..+.+|...|++++|.|   
T Consensus       136 D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g-~~l~gH~K~It~Lawep~hl  213 (480)
T KOG0271|consen  136 DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIG-RALRGHKKWITALAWEPLHL  213 (480)
T ss_pred             CceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCCccc-ccccCcccceeEEeeccccc
Confidence            7899999999999999987 999999999999 99999999999999999999988764 78999999999999975   


Q ss_pred             --CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           78 --NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        78 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                        ..++|++++.||.++|||+..+.....+.        +|..+|+|+.|-- ..++++++.|++|++|+...|.+...+
T Consensus       214 ~p~~r~las~skDg~vrIWd~~~~~~~~~ls--------gHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~l  284 (480)
T KOG0271|consen  214 VPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--------GHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCREL  284 (480)
T ss_pred             CCCccceecccCCCCEEEEEccCceEEEEec--------cCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhh
Confidence              57799999999999999998876654433        6778999999964 358999999999999999999999999


Q ss_pred             cCccccccceEE---------EEecCCC-------------------------EEEEeecCceEEEeeeccceeeeeecc
Q psy988          156 KGYVNVSSQIKA---------SFSHDGK-------------------------YIVSGSENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       156 ~~~~~~~~~~~~---------~~~~~~~-------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (408)
                      ++|.+...-+++         +|.|.++                         .|++|+.|.++.+|+...         
T Consensus       285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~---------  355 (480)
T KOG0271|consen  285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK---------  355 (480)
T ss_pred             cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc---------
Confidence            998876333222         2334443                         499999999999999753         


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeee-------cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ-------MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                        ..+++..+.+|+..|+.+.|+||+++++..       .+..........+++|-..|..++|+.|.++|++|+.|.++
T Consensus       356 --~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL  433 (480)
T KOG0271|consen  356 --SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL  433 (480)
T ss_pred             --cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence              245667889999999999999999999876       34455677777888999999999999999999999999999


Q ss_pred             EEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEee
Q psy988          275 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  322 (408)
                      ++||+++.++...+++|..  .|.++.|+|||..+++|+.|..+++|.
T Consensus       434 Kvw~V~tkKl~~DLpGh~D--EVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  434 KVWDVRTKKLKQDLPGHAD--EVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEeeeeeecccCCCCCc--eEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999877  788999999999999999999999995

>KOG0272|consensus

Probab=100.00  E-value=1.4e-51  Score=322.49  Aligned_cols=283  Identities=18%  Similarity=0.278  Sum_probs=249.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--CCEEEEEecCCEEEEEecc
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--GKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~   97 (408)
                      +-+.+|..+.|++ +++.||||+.+|.+++|+..+....  ..+.+|...|.++.|+|.  +..+++|+.||++++|+++
T Consensus       173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~--~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLL--QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCccee--EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            3678999999999 9999999999999999999888655  799999999999999997  6689999999999999998


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      +......        ..+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...  +.+++|.+||..++
T Consensus       250 ~e~~l~~--------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~--v~~iaf~~DGSL~~  319 (459)
T KOG0272|consen  250 QETPLQD--------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG--VFSIAFQPDGSLAA  319 (459)
T ss_pred             CCcchhh--------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc--cceeEecCCCceee
Confidence            8644333        3466679999999999999999999999999999999988888888765  88999999999999


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +|+.|..-+|||++++..            +..+.+|..                                   +|.+++
T Consensus       320 tGGlD~~~RvWDlRtgr~------------im~L~gH~k-----------------------------------~I~~V~  352 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRC------------IMFLAGHIK-----------------------------------EILSVA  352 (459)
T ss_pred             ccCccchhheeecccCcE------------EEEeccccc-----------------------------------ceeeEe
Confidence            999999999999987532            233444444                                   455555


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEecCCceEEEeeccccCccccccccC
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD  336 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  336 (408)
                      |+|+|..|++|+.|++++|||++..+.+.++++|.+  -|+.++|+| .|.+|++++.|++++||...+.          
T Consensus       353 fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~----------  420 (459)
T KOG0272|consen  353 FSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW----------  420 (459)
T ss_pred             ECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc----------
Confidence            555667789999999999999999999999999877  788999999 7899999999999999998876          


Q ss_pred             ccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          337 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       337 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                        .+++.+.||.+.|.++..+|                |+..++|++.|.++++|.
T Consensus       421 --~~~ksLaGHe~kV~s~Dis~----------------d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 --SPLKSLAGHEGKVISLDISP----------------DSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --ccchhhcCCccceEEEEecc----------------CCceEEEeccCceeeecc
Confidence              78899999999999999999                999999999999999996

>KOG0286|consensus

Probab=100.00  E-value=1.7e-48  Score=291.29  Aligned_cols=293  Identities=21%  Similarity=0.394  Sum_probs=252.6

Q ss_pred             eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEe
Q psy988           17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~   95 (408)
                      ++++ |.+.|.++.|++ |.++|++++.||.+.|||.-+....  ..++-....|..++|+|.|+++|+|+.|+...||+
T Consensus        49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~--haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKV--HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccce--eEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            4454 999999999999 9999999999999999999887766  45555678999999999999999999999999999


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec-CCC
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGK  174 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  174 (408)
                      +.+.+....  .+..+...+|.+.+.|+.|.+ ...|++++.|.+..+||+++++....|.+|...  |.++.++| +++
T Consensus       126 ls~~d~~g~--~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD--V~slsl~p~~~n  200 (343)
T KOG0286|consen  126 LSTRDAEGN--VRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGD--VMSLSLSPSDGN  200 (343)
T ss_pred             ccccccccc--ceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCccc--EEEEecCCCCCC
Confidence            986532211  122233456778999999987 668999999999999999999999999998876  88999999 999


Q ss_pred             EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988          175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS  254 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (408)
                      .+++|+-|+..++||++.+            ...+.+.+|...|+++.|.|                             
T Consensus       201 tFvSg~cD~~aklWD~R~~------------~c~qtF~ghesDINsv~ffP-----------------------------  239 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSG------------QCVQTFEGHESDINSVRFFP-----------------------------  239 (343)
T ss_pred             eEEecccccceeeeeccCc------------ceeEeecccccccceEEEcc-----------------------------
Confidence            9999999999999999764            33455666666665555555                             


Q ss_pred             eeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccc
Q psy988          255 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR  334 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  334 (408)
                            +|.-|++|+.|++.++||++..+.+..+........+++++||..|++|++|..|.++.+||.-.+        
T Consensus       240 ------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~--------  305 (343)
T KOG0286|consen  240 ------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG--------  305 (343)
T ss_pred             ------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc--------
Confidence                  566679999999999999999999999987777778999999999999999999999999998776        


Q ss_pred             cCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          335 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       335 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                          +.+..+.+|.++|+++..+|                ||.-|+||++|.++|||.
T Consensus       306 ----e~vg~L~GHeNRvScl~~s~----------------DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  306 ----ERVGVLAGHENRVSCLGVSP----------------DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ----ceEEEeeccCCeeEEEEECC----------------CCcEEEecchhHheeecC
Confidence                67778999999999999999                999999999999999994

>KOG0272|consensus

Probab=100.00  E-value=2e-48  Score=304.92  Aligned_cols=262  Identities=21%  Similarity=0.349  Sum_probs=233.7

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ++|.++||+..+...++++. |.+.|.++.|+|. ++..+|||+.||++++|++++...+  ..+.+|...|..++|+|+
T Consensus       195 wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~gH~~RVs~VafHPs  272 (459)
T KOG0272|consen  195 WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLEGHLARVSRVAFHPS  272 (459)
T ss_pred             cCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhhcchhhheeeeecCC
Confidence            47999999999999888887 9999999999995 3678999999999999999887655  799999999999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      |++|++++.|.+-++||+++......        ..+|...|.+++|.|||..+++|+.|..-+|||++++.++..+.+|
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~ElL~--------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH  344 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKSELLL--------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH  344 (459)
T ss_pred             CceeeecccccchhhcccccchhhHh--------hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccc
Confidence            99999999999999999998654322        3477889999999999999999999999999999999999999997


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      ...  |.++.|+|+|..|++|+.|++++|||++..            ..+..+..|..-|+.+.|+|.            
T Consensus       345 ~k~--I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------------~~ly~ipAH~nlVS~Vk~~p~------------  398 (459)
T KOG0272|consen  345 IKE--ILSVAFSPNGYHLATGSSDNTCKVWDLRMR------------SELYTIPAHSNLVSQVKYSPQ------------  398 (459)
T ss_pred             ccc--eeeEeECCCceEEeecCCCCcEEEeeeccc------------ccceecccccchhhheEeccc------------
Confidence            765  889999999999999999999999999742            234556666666666666663            


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                                            .|.+|++++.|++++||..+++.+++.+.+|..  .|.++.++||+.++++++.|.++
T Consensus       399 ----------------------~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  399 ----------------------EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             ----------------------CCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCcee
Confidence                                  356689999999999999999999999999877  88999999999999999999999


Q ss_pred             EEee
Q psy988          319 YIWK  322 (408)
Q Consensus       319 ~iw~  322 (408)
                      ++|.
T Consensus       455 KLW~  458 (459)
T KOG0272|consen  455 KLWR  458 (459)
T ss_pred             eecc
Confidence            9995

>KOG0315|consensus

Probab=100.00  E-value=1.3e-45  Score=269.67  Aligned_cols=290  Identities=18%  Similarity=0.333  Sum_probs=244.0

Q ss_pred             CCceEEEEeccCCeeEeEEEeC-CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQHI-DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .|.+||+|...+|.+.++++|. ..|+.++..| +++.||+++. ..|++||+.++...+...+.+|.+.|+++.|..+|
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg   95 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG   95 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecC
Confidence            4899999999999999999965 6799999999 9999999886 78999999999887778999999999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      +.+++|++||+++|||++.......+         .+..+|+++..+|+...|++|..+|.|++||+.+..+...+....
T Consensus        96 rWMyTgseDgt~kIWdlR~~~~qR~~---------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   96 RWMYTGSEDGTVKIWDLRSLSCQRNY---------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             eEEEecCCCceEEEEeccCcccchhc---------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            99999999999999999984433222         234699999999999999999999999999999887666655443


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      . ..+.++...|||.+++.+...|..++|++-......      ...++.                              
T Consensus       167 ~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s------~l~P~~------------------------------  209 (311)
T KOG0315|consen  167 D-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS------ELEPVH------------------------------  209 (311)
T ss_pred             C-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc------cceEhh------------------------------
Confidence            3 668899999999999999999999999985421110      011112                              


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                           .++.|.+.+..+.+|||+++|++++.|.+++||+.++. +....+.+|..  .+..++||.||+||++|+.|+.+
T Consensus       210 -----k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r--WvWdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  210 -----KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR--WVWDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             -----heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc--eEEeeeeccCccEEEecCCCCce
Confidence                 23466667777777888888999999999999999988 66666777655  88999999999999999999999


Q ss_pred             EEeeccccCccccccccCccccceeeeeeccceEEEEec
Q psy988          319 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  357 (408)
Q Consensus       319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  357 (408)
                      ++|++..+            +.+....+|.....|++..
T Consensus       283 rlW~~~~~------------k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  283 RLWDLSAG------------KEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eecccccC------------ceeeecCCcccccEEEEee
Confidence            99999987            6677888898887777764

>KOG0318|consensus

Probab=100.00  E-value=5e-44  Score=287.97  Aligned_cols=348  Identities=18%  Similarity=0.256  Sum_probs=273.9

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec---CCceeeEEEEEec
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE---GQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~   77 (408)
                      |++|.+|.=..-+...+++ |..-|+|+.|+| ||.++++++.||+|.+||-.+++..  ..+.   +|.+.|.+++|+|
T Consensus       169 Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~v--g~l~~~~aHkGsIfalsWsP  245 (603)
T KOG0318|consen  169 DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKV--GELEDSDAHKGSIFALSWSP  245 (603)
T ss_pred             CCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEE--EEecCCCCccccEEEEEECC
Confidence            6778888766666667776 999999999999 9999999999999999999999876  4555   8999999999999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      |++.+++++.|.+++|||+.+.+..........     .......+.|.  +..|++.+.+|.|.+++......+..+.+
T Consensus       246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G  318 (603)
T KOG0318|consen  246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG  318 (603)
T ss_pred             CCceEEEecCCceEEEEEeeccceEEEeecCCc-----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc
Confidence            999999999999999999999987776654432     12345556665  67899999999999999999999999999


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |...  ++++..++++++|++|+.||.|.-|+...+.....           .-..|...|.+++.+..+..+..++++.
T Consensus       319 HnK~--ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-----------~g~~h~nqI~~~~~~~~~~~~t~g~Dd~  385 (603)
T KOG0318|consen  319 HNKS--ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-----------AGKGHTNQIKGMAASESGELFTIGWDDT  385 (603)
T ss_pred             cccc--eeEEEEcCCCCEEEeeccCceEEEEecCCcccccc-----------ccccccceEEEEeecCCCcEEEEecCCe
Confidence            8766  88999999999999999999999999976543211           0134555555555554444333322111


Q ss_pred             C-------------------------------------CCCceeeec--------CCCceeeeeccCCCCCeEEEecCCC
Q psy988          238 K-------------------------------------SESTGYVLN--------ATGRKISGIEPMPGEDKILVTSNDS  272 (408)
Q Consensus       238 ~-------------------------------------~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~  272 (408)
                      -                                     ......+++        ...-...+++++|++..+++|+.|+
T Consensus       386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg  465 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG  465 (603)
T ss_pred             EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence            0                                     000011111        1234567889999999999999999


Q ss_pred             eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE
Q psy988          273 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  352 (408)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  352 (408)
                      .|+||.+...++........+...+++++||||+.|||+|...+.+.+||+.+.+.           ....+.-|...|.
T Consensus       466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-----------~~~~w~FHtakI~  534 (603)
T KOG0318|consen  466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-----------KTNRWAFHTAKIN  534 (603)
T ss_pred             eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-----------ecceeeeeeeeEE
Confidence            99999998766544434344455899999999999999999999999999998632           2344566999999


Q ss_pred             EEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          353 CAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      +++|+|                +..++|||+.|-+|.||+++.+.++
T Consensus       535 ~~aWsP----------------~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  535 CVAWSP----------------NNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             EEEeCC----------------CceEEEeccccceEEEEEccChhhh
Confidence            999999                8999999999999999999877654

>KOG0319|consensus

Probab=100.00  E-value=2.7e-45  Score=306.69  Aligned_cols=353  Identities=20%  Similarity=0.326  Sum_probs=280.0

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCC--EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDR--YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .||.|+|||+..+.+.+.+. |.+.|.++.|+| +..  .|++|..|+.+++||+.+... ....+..|.+.|++++|++
T Consensus       125 aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~-~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~  202 (775)
T KOG0319|consen  125 ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHP-HWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSE  202 (775)
T ss_pred             ccceEEEEEeeCCEEEEEecCCCceEEEEEeCC-ccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeecc
Confidence            48999999999999999998 999999999999 443  578999999999999986654 3378899999999999999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-----CCeEEEeeCCCeEEEEEccCcccc
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-----EDKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      |+..+++++.|..+.+||+.+.+.....+...         .+.++.+.++     +.++++++.+|.+++||.+++++.
T Consensus       203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye---------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~  273 (775)
T KOG0319|consen  203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE---------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCV  273 (775)
T ss_pred             CCceEEEeccCcEEEEeehhhhhhhheechhh---------heeeEEEechhcCCcceEEEEecCCceEEEEecccchhh
Confidence            99999999999999999997655444333222         3444445444     456777777777777776544322


Q ss_pred             ee------------------------------------------------------------------------------
Q psy988          153 CK------------------------------------------------------------------------------  154 (408)
Q Consensus       153 ~~------------------------------------------------------------------------------  154 (408)
                      ..                                                                              
T Consensus       274 ~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~  353 (775)
T KOG0319|consen  274 YKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL  353 (775)
T ss_pred             hhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec
Confidence            11                                                                              


Q ss_pred             -------ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          155 -------YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       155 -------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                             +.+|.  ..+.++....+|-+|++++.|.++++|.++++...        ..++....+|...|.+++++..+
T Consensus       354 ~~~~c~ii~GH~--e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~--------~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  354 PTSYCQIIPGHT--EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK--------SLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             CCCceEEEeCch--hheeeeeecccCcEEEEecCCceEEEEEecCCcch--------hhhhhhhcccccccceeeecccC
Confidence                   11111  22444444456678888999999999988443322        23456678999999999998777


Q ss_pred             ceeeeecCCCC-----------CCCcee------eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          228 ELIIAQMEPDK-----------SESTGY------VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       228 ~~~~~~~~~~~-----------~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      ..+++....+.           ......      ....|+..|++++++|+.+.+++|+.|.+.+||+++.......+.+
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG  503 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG  503 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence            66655432221           111111      3347889999999999999999999999999999999999999999


Q ss_pred             ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988          291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                      |..  .+.++.|+|..+.+|++|.|++|+||.+.+.            .++.++.||...|..+.|-.            
T Consensus       504 H~R--Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------------SClkT~eGH~~aVlra~F~~------------  557 (775)
T KOG0319|consen  504 HTR--GVWCVSFSKNDQLLATCSGDKTVKIWSISTF------------SCLKTFEGHTSAVLRASFIR------------  557 (775)
T ss_pred             Ccc--ceEEEEeccccceeEeccCCceEEEEEeccc------------eeeeeecCccceeEeeeeee------------
Confidence            987  7889999999999999999999999999997            79999999999999999999            


Q ss_pred             CCCCcccEEEEEecCCeEEEEeCCCCCCcccccc
Q psy988          371 KSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       371 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                          +|..|+|++.||.|++|++++.++..++..
T Consensus       558 ----~~~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  558 ----NGKQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             ----CCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence                899999999999999999999998877643

>KOG0279|consensus

Probab=100.00  E-value=4.4e-44  Score=265.93  Aligned_cols=301  Identities=16%  Similarity=0.258  Sum_probs=235.9

Q ss_pred             EeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCce---eeeeecCCceeeEEEEEecCCCEEEEEecCCEE
Q psy988           16 LCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA---VWNEVEGQTKLITAANFCENGKFAVVGSYDGRC   91 (408)
Q Consensus        16 ~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   91 (408)
                      ..++. |++.|+.++..+.+.+.|++++.|.++.+|++......   ..+.+.+|...|..+..+++|++.++++.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            34454 99999999999977889999999999999999764322   247899999999999999999999999999999


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      ++||+.+++....+.        +|...|.+++|++|++++++|+.|.+|++|+... .+..++....+...|.++.|+|
T Consensus        88 rlWDl~~g~~t~~f~--------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   88 RLWDLATGESTRRFV--------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             EEEEecCCcEEEEEE--------ecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcC
Confidence            999999986655554        5678999999999999999999999999999875 4444554444356799999999


Q ss_pred             C--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCC
Q psy988          172 D--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNAT  249 (408)
Q Consensus       172 ~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (408)
                      +  ..+|++++.|+++++||+++-            +....+.+|...+                               
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~------------~l~~~~~gh~~~v-------------------------------  195 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNC------------QLRTTFIGHSGYV-------------------------------  195 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCc------------chhhccccccccE-------------------------------
Confidence            8  678999999999999999753            2223344455444                               


Q ss_pred             CceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                          +.+++||||..+++|+.||.+.+||++.++.+..+..   ...|.+++|+|+.-.|+.+. +..|+|||+.++...
T Consensus       196 ----~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  196 ----NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV  267 (315)
T ss_pred             ----EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence                4555555677778999999999999999999777765   33788999999977776665 456999999987443


Q ss_pred             ccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          330 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ..........   ....-.....+++|++                ||..|+.|..|+.|++|.+..
T Consensus       268 ~~l~~d~~g~---s~~~~~~~clslaws~----------------dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  268 EELKLDGIGP---SSKAGDPICLSLAWSA----------------DGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             hhcccccccc---ccccCCcEEEEEEEcC----------------CCcEEEeeecCCcEEEEEeec
Confidence            3221111110   1112233457789999                999999999999999998753

>KOG0315|consensus

Probab=100.00  E-value=6.7e-44  Score=260.71  Aligned_cols=282  Identities=15%  Similarity=0.235  Sum_probs=232.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      +.-+|+++|.|.+|++|...+|.+.  .+++...+.|+.+...|+++.|++++. ..|++||+.+.+......      .
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~--rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t------~   79 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICS--RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVAT------F   79 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEE--EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeE------E
Confidence            3468999999999999999999987  788888889999999999999998875 579999999877543222      2


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988          114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                      .+|...|..+.|..+|+.+++|++||+++|||++...+.+.+...   ..+.++..+|+...|++|..+|.|++||+.+.
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            345678999999999999999999999999999986666555543   55889999999999999999999999999753


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCe
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSR  273 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  273 (408)
                      ....                                              .........|.++...|||.+++.+...|.
T Consensus       157 ~c~~----------------------------------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  157 SCTH----------------------------------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             cccc----------------------------------------------ccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence            2111                                              011123345667777778888899999999


Q ss_pred             EEEEEcCCCe------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeee
Q psy988          274 IRLYDLRDLN------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  347 (408)
Q Consensus       274 i~i~d~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h  347 (408)
                      .++|++-+..      ++.+++.|..  .+..+.+|||+++||+++.|.+++||+.++- .          +....+.+|
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~--~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~----------kle~~l~gh  257 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNG--HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F----------KLELVLTGH  257 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccc--eEEEEEECCCCcEEEeecCCceEEEEecCCc-e----------eeEEEeecC
Confidence            9999987643      4455666544  8889999999999999999999999999874 1          345668899


Q ss_pred             ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          348 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       348 ~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      ...+...+||.                ||++|+||+.|+.+|+|++..++++...
T Consensus       258 ~rWvWdc~FS~----------------dg~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  258 QRWVWDCAFSA----------------DGEYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             CceEEeeeecc----------------CccEEEecCCCCceeecccccCceeeec
Confidence            99999999999                9999999999999999999999866543

>KOG0282|consensus

Probab=100.00  E-value=3.4e-45  Score=291.71  Aligned_cols=292  Identities=20%  Similarity=0.382  Sum_probs=249.4

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      .+.++. |+..|+++.|.|..+.+|++++.|+.|+||++.. +.++  +++.+|..+|..++|+++|..+++++.|+.++
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--RTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee--hhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            344554 9999999999998899999999999999999987 5554  89999999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      +||+++++....+...         ..+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|...  +..+.|-+
T Consensus       284 lwDtETG~~~~~f~~~---------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~--i~~i~F~~  352 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHLD---------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA--ILDITFVD  352 (503)
T ss_pred             eeccccceEEEEEecC---------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh--eeeeEEcc
Confidence            9999999988877644         378999999998 78899999999999999999999988877655  78899999


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      +|+++++.+.|+.+++|+.+.+....            .                                  +......
T Consensus       353 ~g~rFissSDdks~riWe~~~~v~ik------------~----------------------------------i~~~~~h  386 (503)
T KOG0282|consen  353 EGRRFISSSDDKSVRIWENRIPVPIK------------N----------------------------------IADPEMH  386 (503)
T ss_pred             CCceEeeeccCccEEEEEcCCCccch------------h----------------------------------hcchhhc
Confidence            99999999999999999986532110            0                                  0011222


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCC---eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                      ...++..+|++.+++.-+.|+.|.+|.+...   .....+.+|...+..+.+.|||||++|++|+.||.+.+||.++-  
T Consensus       387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~--  464 (503)
T KOG0282|consen  387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT--  464 (503)
T ss_pred             cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh--
Confidence            3445666777888888899999999986542   33456788887788889999999999999999999999999986  


Q ss_pred             cccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          329 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                                +++..+.+|.+++..+.|+|.               ....+|||+.||.|++|+
T Consensus       465 ----------kl~~~lkah~~~ci~v~wHP~---------------e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  465 ----------KLVSKLKAHDQPCIGVDWHPV---------------EPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ----------hhhhccccCCcceEEEEecCC---------------CcceeEecccCceeEecC
Confidence                      788899999999999999995               567899999999999996

>KOG0293|consensus

Probab=100.00  E-value=2.9e-44  Score=280.99  Aligned_cols=291  Identities=21%  Similarity=0.359  Sum_probs=246.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      |++.|+-+.||+ +|+|||+++.|.+..+|++... .....+++.+|..+|..+.||||.++|++|+.+..+.+||+.++
T Consensus       223 htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  223 HTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             CCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            999999999999 9999999999999999998653 34555789999999999999999999999999999999999998


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      ........       +++..+.+++|.||+..+++|+.|+.+..||+.. +.....++... ..+.+++.++||+++++.
T Consensus       302 d~~~~y~~-------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~-~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  302 DLRHLYPS-------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRD-PKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             hhhhhccc-------CcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccccccc-ceeEEEEEcCCCcEEEEE
Confidence            76443321       2456899999999999999999999999999974 44555554332 347789999999999999


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      +.|..|++++.++....             .+.                                   ....+|+++++|
T Consensus       373 ~~d~~i~l~~~e~~~dr-------------~li-----------------------------------se~~~its~~iS  404 (519)
T KOG0293|consen  373 TVDKKIRLYNREARVDR-------------GLI-----------------------------------SEEQPITSFSIS  404 (519)
T ss_pred             ecccceeeechhhhhhh-------------ccc-----------------------------------cccCceeEEEEc
Confidence            99999999997542100             011                                   234456677777


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      .+++++++.-.+..+++||++..+.++.+.+|.....+..-||.- +..++|+|++|+.|+||+..++            
T Consensus       405 ~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg------------  472 (519)
T KOG0293|consen  405 KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG------------  472 (519)
T ss_pred             CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC------------
Confidence            778888888899999999999999999999998887888888876 5589999999999999999988            


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      +++..+.||...|++++|+|.               +..++||||+||+||||.+...
T Consensus       473 kll~~LsGHs~~vNcVswNP~---------------~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  473 KLLAVLSGHSKTVNCVSWNPA---------------DPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ceeEeecCCcceeeEEecCCC---------------CHHHhhccCCCCeEEEecCCcc
Confidence            899999999999999999996               7889999999999999988654

>KOG0295|consensus

Probab=100.00  E-value=1.1e-43  Score=273.24  Aligned_cols=304  Identities=21%  Similarity=0.301  Sum_probs=263.8

Q ss_pred             eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           15 CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        15 ~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      ..+..+|..+|+.+-|+| +..++++++.|++|++||..++++.  ..+++|...+..++|+..|+++++++.|=.+.+|
T Consensus       101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e--~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELE--RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhh--hhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            334456999999999999 9999999999999999999999986  8999999999999999999999999999889999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      |.++...       ......+|...|.++.|-|.|.++++++.|.+|+.|+..++-++.++.+|..-  +..+..+.||.
T Consensus       178 d~~~~~~-------c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew--vr~v~v~~DGt  248 (406)
T KOG0295|consen  178 DFDTFFR-------CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW--VRMVRVNQDGT  248 (406)
T ss_pred             eHHHHHH-------HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh--EEEEEecCCee
Confidence            9987421       12222345568999999999999999999999999999999999999998774  77788999999


Q ss_pred             EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988          175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS  254 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (408)
                      .+++++.|.++++|-..+.            ++...+..|+.+|.+++|.|...+-.                     |.
T Consensus       249 i~As~s~dqtl~vW~~~t~------------~~k~~lR~hEh~vEci~wap~~~~~~---------------------i~  295 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATK------------QCKAELREHEHPVECIAWAPESSYPS---------------------IS  295 (406)
T ss_pred             EEEecCCCceEEEEEeccc------------hhhhhhhccccceEEEEecccccCcc---------------------hh
Confidence            9999999999999998764            34466889999999999999755321                     11


Q ss_pred             eeccC-CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          255 GIEPM-PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       255 ~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                      ...-+ ..++++.+++.|++|++||+.++.++.++.+|.+  .|..++|+|.|+||+++.+|+++++||+++.       
T Consensus       296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-------  366 (406)
T KOG0295|consen  296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-------  366 (406)
T ss_pred             hccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------
Confidence            11111 1357899999999999999999999999999877  8899999999999999999999999999997       


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                           .+...+..|..-|+++.|+.                +-.+++||+-|.++++|.-
T Consensus       367 -----~cmk~~~ah~hfvt~lDfh~----------------~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 -----QCMKTLEAHEHFVTSLDFHK----------------TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -----eeeeccCCCcceeEEEecCC----------------CCceEEeccccceeeeeec
Confidence                 67888889999999999998                7789999999999999963

>KOG0296|consensus

Probab=100.00  E-value=4e-42  Score=264.79  Aligned_cols=322  Identities=17%  Similarity=0.277  Sum_probs=256.3

Q ss_pred             eEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEe
Q psy988           17 CCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        17 ~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~   95 (408)
                      ..| .|++.|.+++.+| +.++++||+.|..-.+|++.++...  ..+.+|+..|+++.|+.+|.+||+|..+|.|+||.
T Consensus        58 ~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            344 4999999999999 9999999999999999999999966  78999999999999999999999999999999999


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      ..++.....+.        .....+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|...  +.+-.|.|+|+.
T Consensus       135 ~stg~~~~~~~--------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f~pdGKr  204 (399)
T KOG0296|consen  135 VSTGGEQWKLD--------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEFIPDGKR  204 (399)
T ss_pred             cccCceEEEee--------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccccCCCce
Confidence            99987665553        11247888999999999999999999999999998888888887654  677889999999


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC----------CC-----CC
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP----------DK-----SE  240 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~-----~~  240 (408)
                      ++++..||+|++||+.++.+.......+           .....++.++..+..++.....          .+     ..
T Consensus       205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e-----------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  205 ILTGYDDGTIIVWNPKTGQPLHKITQAE-----------GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             EEEEecCceEEEEecCCCceeEEecccc-----------cCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence            9999999999999999886654432111           1112233333333222221111          00     00


Q ss_pred             CceeeecCCCc---eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          241 STGYVLNATGR---KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       241 ~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                      ....+...+..   .|..+.++..-.+.|+|+.||+|.|||+...++...+..   ...|+.+.|-+ ..+|++++.+|.
T Consensus       274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~  349 (399)
T KOG0296|consen  274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGK  349 (399)
T ss_pred             CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchheeeccCce
Confidence            11122223333   344455556667889999999999999998777666553   33689999999 789999999999


Q ss_pred             EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      |+.||.+++            .++..+.+|...|.+++.+|                +.++++|++.|++.+||+.+
T Consensus       350 v~~wDaRtG------------~l~~~y~GH~~~Il~f~ls~----------------~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  350 VRQWDARTG------------QLKFTYTGHQMGILDFALSP----------------QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEeeecccc------------ceEEEEecCchheeEEEEcC----------------CCcEEEEecCCCeEEEEecC
Confidence            999999998            78888999999999999999                99999999999999999875

>KOG0279|consensus

Probab=100.00  E-value=2.5e-42  Score=256.64  Aligned_cols=263  Identities=21%  Similarity=0.356  Sum_probs=214.4

Q ss_pred             CCceEEEEecc-----CCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            1 MDKTVRLWHIS-----RKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         1 ~Dg~i~vwd~~-----~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      .|.++.+|++.     .|.+++.+. |...|..+..++ ++++.++++.|+++++||+.+++..  +.+.+|...|.+++
T Consensus        36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t--~~f~GH~~dVlsva  112 (315)
T KOG0279|consen   36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGEST--RRFVGHTKDVLSVA  112 (315)
T ss_pred             cceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEE--EEEEecCCceEEEE
Confidence            48899999875     456677776 999999999999 9999999999999999999999655  79999999999999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccc
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      |++|.+.+++|+.|.+|++|++..........       ..+.+.|.|+.|+|+  ...|++++.|++|++||+++.+..
T Consensus       113 ~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~  185 (315)
T KOG0279|consen  113 FSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR  185 (315)
T ss_pred             ecCCCceeecCCCcceeeeeeecccEEEEEec-------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence            99999999999999999999987654322211       112568999999998  678999999999999999999999


Q ss_pred             eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      ..+.+|.+.  +..++++|||...++|+.||.+.+||++.++..+             ...+...|.+++|+|+      
T Consensus       186 ~~~~gh~~~--v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly-------------sl~a~~~v~sl~fspn------  244 (315)
T KOG0279|consen  186 TTFIGHSGY--VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY-------------SLEAFDIVNSLCFSPN------  244 (315)
T ss_pred             hcccccccc--EEEEEECCCCCEEecCCCCceEEEEEccCCceeE-------------eccCCCeEeeEEecCC------
Confidence            889887765  7789999999999999999999999998654322             1344455555555554      


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-------ceeceeEEEEcCC
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-------NVSSQIKASFSHD  305 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~v~~~~~s~~  305 (408)
                                                   .-.|+. ..+..|+|||+.++..+..+....       ......+++|++|
T Consensus       245 -----------------------------rywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d  294 (315)
T KOG0279|consen  245 -----------------------------RYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD  294 (315)
T ss_pred             -----------------------------ceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC
Confidence                                         444444 344459999999988776654221       1234678999999


Q ss_pred             CCEEEEecCCceEEEeecc
Q psy988          306 GKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       306 ~~~l~~~~~dg~i~iw~~~  324 (408)
                      |..|++|-.|+.|++|.+.
T Consensus       295 G~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  295 GQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CcEEEeeecCCcEEEEEee
Confidence            9999999999999999874

>KOG0273|consensus

Probab=100.00  E-value=8e-42  Score=271.64  Aligned_cols=288  Identities=18%  Similarity=0.299  Sum_probs=250.3

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      ...|++++|+. +|..||+|+.||.++||+......   ..+..|.++|.++.|+..|.||++++.|+++.+||..++..
T Consensus       235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~l~---~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGNLI---STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecC-CCCeEEEeecCcEEEEEecCchhh---hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            46799999999 999999999999999999876644   48899999999999999999999999999999999998887


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      .+.+.+..        .+-..+.|-. ...+++++.|+.|+++.+....+..++.+|.+.  |.++.|+|.|..|++++.
T Consensus       311 ~q~f~~~s--------~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~n~tg~LLaS~Sd  379 (524)
T KOG0273|consen  311 KQQFEFHS--------APALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKWNPTGSLLASCSD  379 (524)
T ss_pred             EEeeeecc--------CCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEECCCCceEEEecC
Confidence            77766544        2445677764 567899999999999999999999999997766  889999999999999999


Q ss_pred             CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-
Q psy988          182 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-  260 (408)
Q Consensus       182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  260 (408)
                      |++++||+...            ......+..|...|..+.|+|.+...                           ..| 
T Consensus       380 D~TlkiWs~~~------------~~~~~~l~~Hskei~t~~wsp~g~v~---------------------------~n~~  420 (524)
T KOG0273|consen  380 DGTLKIWSMGQ------------SNSVHDLQAHSKEIYTIKWSPTGPVT---------------------------SNPN  420 (524)
T ss_pred             CCeeEeeecCC------------CcchhhhhhhccceeeEeecCCCCcc---------------------------CCCc
Confidence            99999999754            34557788999999999999987643                           223 


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      .+..+++++.|++|++||+..+.++..|..|..  +|.+++|+|+|+++|+|+.||.|.+|+++++            ++
T Consensus       421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg~V~iws~~~~------------~l  486 (524)
T KOG0273|consen  421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDGCVHIWSTKTG------------KL  486 (524)
T ss_pred             CCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCCeeEeccccch------------he
Confidence            356788999999999999999999999988766  8999999999999999999999999999987            56


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ++...+ .+.|..++|+.                +|..|..+-.||.+++-|+.
T Consensus       487 ~~s~~~-~~~Ifel~Wn~----------------~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  487 VKSYQG-TGGIFELCWNA----------------AGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eEeecC-CCeEEEEEEcC----------------CCCEEEEEecCCCceEEEec
Confidence            666654 45699999999                88999999999999998875

>KOG0284|consensus

Probab=100.00  E-value=7.7e-44  Score=278.08  Aligned_cols=285  Identities=18%  Similarity=0.338  Sum_probs=242.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      -+.+|..+.|.| +|+.|++|+..|.+.+|+...-...  ..++.|..+|+++.|+++|.++++|+.+|.|++|+..-..
T Consensus        95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFE--tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFE--TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             cccceeeEEEcC-CCceeEeecccccEEEecCceeeHH--HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence            456899999999 9999999999999999998665554  5788999999999999999999999999999999876433


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ...      .  ..+|...|.+++|+|+...|++++.||.|+|||....+....+.+|.-.  +.+++|+|....|++++
T Consensus       172 Vk~------~--~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd--VksvdWHP~kgLiasgs  241 (464)
T KOG0284|consen  172 VKI------I--QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD--VKSVDWHPTKGLIASGS  241 (464)
T ss_pred             hHH------h--hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC--cceeccCCccceeEEcc
Confidence            211      1  1233468999999999999999999999999999988888888887655  78999999999999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .|..|++||.+++            .++.++..|+..|..+.|+|+                                  
T Consensus       242 kDnlVKlWDprSg------------~cl~tlh~HKntVl~~~f~~n----------------------------------  275 (464)
T KOG0284|consen  242 KDNLVKLWDPRSG------------SCLATLHGHKNTVLAVKFNPN----------------------------------  275 (464)
T ss_pred             CCceeEeecCCCc------------chhhhhhhccceEEEEEEcCC----------------------------------
Confidence            9999999999764            455666777777766666665                                  


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEecCCceEEEeeccccCccccccccCccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND  339 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  339 (408)
                       +++|++++.|..+++||+++.+.+..+++|..  .++++.|+| ...+|.+|+.||.|..|.+....           +
T Consensus       276 -~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-----------p  341 (464)
T KOG0284|consen  276 -GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-----------P  341 (464)
T ss_pred             -CCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEeccccc-----------c
Confidence             55678999999999999999999999999876  789999999 66788899999999999998431           2


Q ss_pred             cceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          340 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       340 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ....-.+|...|++++|+|                -|.+|++|+.|.++++|.-.
T Consensus       342 ~~~i~~AHd~~iwsl~~hP----------------lGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  342 LGEIPPAHDGEIWSLAYHP----------------LGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccCCCcccccceeeeeccc----------------cceeEeecCCCcceeeeccC
Confidence            3333457999999999999                89999999999999999754

>KOG0265|consensus

Probab=100.00  E-value=4.5e-42  Score=257.86  Aligned_cols=286  Identities=19%  Similarity=0.326  Sum_probs=236.5

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +|++.|+.+.|+| +|.+||||+.|..|.+|++... +.....+++|.+.|..+.|.+|++.+++++.|.+++.||++++
T Consensus        45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             CCcceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            4999999999999 9999999999999999997543 3344688899999999999999999999999999999999998


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEE-EeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      +.....        ..|..-++.+..+.-|..++ +++.|+++++||+++...++++...   ..+.++.|..++..+++
T Consensus       123 ~~~rk~--------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  123 KRIRKH--------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---YQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             eeeehh--------ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---eeEEEEEecccccceee
Confidence            765443        35567788888655565554 5677999999999998888777544   33778999999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      |+-|+.|++||++.+            .....+.+|..+|+.+..+|                                 
T Consensus       192 ggIdn~ikvWd~r~~------------d~~~~lsGh~DtIt~lsls~---------------------------------  226 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKN------------DGLYTLSGHADTITGLSLSR---------------------------------  226 (338)
T ss_pred             ccccCceeeeccccC------------cceEEeecccCceeeEEecc---------------------------------
Confidence            999999999999653            33445566666666665555                                 


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCC----eeeeEEeecccee--ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDL----NLSCKYKGYVNVS--SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                        +|.++.+-+.|.++++||++..    +++..+.++.+..  ....++|+|+++.+.+|+.|..+++||....      
T Consensus       227 --~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r------  298 (338)
T KOG0265|consen  227 --YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR------  298 (338)
T ss_pred             --CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc------
Confidence              4555677899999999998753    4577787776533  3457899999999999999999999999875      


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                            ..+..+.||.+.|++++|+|                ...+|.+++.|.+|++=++
T Consensus       299 ------~~lyklpGh~gsvn~~~Fhp----------------~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  299 ------RILYKLPGHYGSVNEVDFHP----------------TEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             ------cEEEEcCCcceeEEEeeecC----------------CCcEEEEeccCceeEeecc
Confidence                  67888999999999999999                8899999999999987443

>KOG0645|consensus

Probab=100.00  E-value=5.8e-41  Score=248.37  Aligned_cols=297  Identities=13%  Similarity=0.243  Sum_probs=227.0

Q ss_pred             EeEEE-eCCceEEEEEcCCC-CCEEEEEeCCCcEEEEecCCCC-ceeeeee-cCCceeeEEEEEecCCCEEEEEecCCEE
Q psy988           16 LCCFQ-HIDFVTAICFHPRD-DRYFLSGSLDGKLRLWNIPDKK-VAVWNEV-EGQTKLITAANFCENGKFAVVGSYDGRC   91 (408)
Q Consensus        16 ~~~~~-h~~~v~~~~~sp~~-~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i   91 (408)
                      ++.++ |++.+..++|+| . |..||+|+.|+.|++|+...+. ......+ .+|+..|++++|+|.|++|++++.|.++
T Consensus         7 ~~~~~gh~~r~W~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             EEeecCCCCcEEEEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            34444 999999999999 6 8899999999999999998532 3322222 4799999999999999999999999999


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc---ccceeecCccccccceEEE
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNVSSQIKAS  168 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~  168 (408)
                      .||.-...+...      .....+|...|.+++|+++|++|++++.|..|-||.+...   ++...++.|...  +..+.
T Consensus        86 ~Iw~k~~~efec------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--VK~V~  157 (312)
T KOG0645|consen   86 VIWKKEDGEFEC------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--VKHVI  157 (312)
T ss_pred             EEeecCCCceeE------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--ccEEE
Confidence            999877554322      3334577889999999999999999999999999998743   355667777765  77899


Q ss_pred             EecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC
Q psy988          169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA  248 (408)
Q Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (408)
                      |+|....|++++.|.+|++|+-..+         +.-.+..++.+|...|.                             
T Consensus       158 WHPt~dlL~S~SYDnTIk~~~~~~d---------ddW~c~~tl~g~~~TVW-----------------------------  199 (312)
T KOG0645|consen  158 WHPTEDLLFSCSYDNTIKVYRDEDD---------DDWECVQTLDGHENTVW-----------------------------  199 (312)
T ss_pred             EcCCcceeEEeccCCeEEEEeecCC---------CCeeEEEEecCccceEE-----------------------------
Confidence            9999999999999999999986421         11223344445544444                             


Q ss_pred             CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          249 TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                            +++|++.|..|++++.|++++||-..+.     +.. .+...+..+.|.  ...||+++.|+.|++|.-.... 
T Consensus       200 ------~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~-~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~-  264 (312)
T KOG0645|consen  200 ------SLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSG-MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSP-  264 (312)
T ss_pred             ------EEEecCCCceEEEecCCcceEeeeeccC-----cch-hcccceEeeeec--ccceEeccCCCEEEEEEecCCC-
Confidence                  4555555666789999999999986622     221 223367778887  5689999999999999876421 


Q ss_pred             cccccccCccccc-eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          329 KFSSVRRDRNDFW-EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       329 ~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                           ..+..+++ ..-..|...|++++|.|.               ..++|++|+.||.|++|.+.
T Consensus       265 -----d~p~~~l~~~~~~aHe~dVNsV~w~p~---------------~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 -----DEPSWNLLAKKEGAHEVDVNSVQWNPK---------------VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             -----CCchHHHHHhhhcccccccceEEEcCC---------------CCCceeecCCCceEEEEEec
Confidence                 11112222 244579999999999993               36899999999999999875

>KOG0319|consensus

Probab=100.00  E-value=2e-42  Score=289.61  Aligned_cols=360  Identities=14%  Similarity=0.268  Sum_probs=271.1

Q ss_pred             ceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            3 KTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      +-+++|++.++++++...  |++||.-++|+| .+.+|++|+.|+.+++||+..+.+.  ..+++|.+.|.++.|+|+-.
T Consensus        84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~-~g~LlAtggaD~~v~VWdi~~~~~t--h~fkG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen   84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDP-TGTLLATGGADGRVKVWDIKNGYCT--HSFKGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             ceEEEEEcccchHhHhHhhccCCCeEEEEEcC-CCceEEeccccceEEEEEeeCCEEE--EEecCCCceEEEEEeCCccc
Confidence            468999999999999887  999999999999 8899999999999999999999887  79999999999999999754


Q ss_pred             --EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           81 --FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 --~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                        .|++|..|+.+++||+.+...       .......|.+.|+++.|.+++..+++++.|..+.+||+.+.+....+...
T Consensus       161 ~~lL~sg~~D~~v~vwnl~~~~t-------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y  233 (775)
T KOG0319|consen  161 RWLLASGATDGTVRVWNLNDKRT-------CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY  233 (775)
T ss_pred             hhheeecCCCceEEEEEcccCch-------HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh
Confidence              489999999999999986543       22233456789999999999999999999999999999776666665544


Q ss_pred             cccccceEEEEecC-----CCEEEEeecCceEEEeeeccceeeeeeccc-------------------------------
Q psy988          159 VNVSSQIKASFSHD-----GKYIVSGSENQCIYIWKTHHDYAKFSSVRR-------------------------------  202 (408)
Q Consensus       159 ~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------------  202 (408)
                      ..   +-++.+-++     +.++++++.+|.+++||.+.+.........                               
T Consensus       234 e~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  234 ES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             hh---eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence            33   334556555     669999999999999997654432211111                               


Q ss_pred             CCCccccccc------------------------------------------cccceEEEEEEeCCcceeeeecCCCC--
Q psy988          203 DRNDFWEGIK------------------------------------------AHNAVVTCAVFAPCPELIIAQMEPDK--  238 (408)
Q Consensus       203 ~~~~~~~~~~------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~--  238 (408)
                      +.....+.+.                                          +|...|.++....+|..+++...+..  
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi  390 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI  390 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence            1111122222                                          33333333332233322222211110  


Q ss_pred             ---------CCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcCCCee-------eeEEeeccceeceeEEE
Q psy988          239 ---------SESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNL-------SCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       239 ---------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~  301 (408)
                               .........+|...|.+++++..+ .+|++++.|.++++|++...+.       ...+..+.+...|.+++
T Consensus       391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va  470 (775)
T KOG0319|consen  391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA  470 (775)
T ss_pred             EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence                     111122244677788888887654 5778889999999999876221       11122334455899999


Q ss_pred             EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                      ++|+.+++|+||.|.+.+||+++..            .....+.+|...|.++.|+|                ..+.+||
T Consensus       471 ia~ndkLiAT~SqDktaKiW~le~~------------~l~~vLsGH~RGvw~V~Fs~----------------~dq~laT  522 (775)
T KOG0319|consen  471 IAPNDKLIATGSQDKTAKIWDLEQL------------RLLGVLSGHTRGVWCVSFSK----------------NDQLLAT  522 (775)
T ss_pred             ecCCCceEEecccccceeeecccCc------------eEEEEeeCCccceEEEEecc----------------ccceeEe
Confidence            9999999999999999999999965            78889999999999999999                8899999


Q ss_pred             EecCCeEEEEeCCCCCCccccc
Q psy988          382 ADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      ++.|++|+||.+.+..+..++.
T Consensus       523 ~SgD~TvKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  523 CSGDKTVKIWSISTFSCLKTFE  544 (775)
T ss_pred             ccCCceEEEEEeccceeeeeec
Confidence            9999999999999988777664

>KOG0286|consensus

Probab=100.00  E-value=4.1e-41  Score=251.86  Aligned_cols=262  Identities=16%  Similarity=0.275  Sum_probs=230.7

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC----CceeeeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK----KVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      ||.+.|||.-+...++.+. -...|..++|+| .++++|+|+.|+...||++.+.    .....+.+.+|.+.+.++.|.
T Consensus        76 DGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~  154 (343)
T KOG0286|consen   76 DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL  154 (343)
T ss_pred             CCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc
Confidence            8999999999988888888 788999999999 9999999999999999999853    334457899999999999998


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      +| ..|++++.|.++.+||+++++....+.        +|.+.|.++.++| +++.+++|+.|+..++||++.+...+.|
T Consensus       155 dD-~~ilT~SGD~TCalWDie~g~~~~~f~--------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  155 DD-NHILTGSGDMTCALWDIETGQQTQVFH--------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             CC-CceEecCCCceEEEEEcccceEEEEec--------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            75 568999999999999999998766554        6778999999999 9999999999999999999999999999


Q ss_pred             cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      .+|...  |.++.|.|+|.-|++|++|++.++||++.+.....                        |+++         
T Consensus       226 ~ghesD--INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~------------------------ys~~---------  270 (343)
T KOG0286|consen  226 EGHESD--INSVRFFPSGDAFATGSDDATCRLYDLRADQELAV------------------------YSHD---------  270 (343)
T ss_pred             cccccc--cceEEEccCCCeeeecCCCceeEEEeecCCcEEee------------------------eccC---------
Confidence            998866  78999999999999999999999999987543321                        1111         


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  315 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  315 (408)
                                  ....+|++++||..|++|++|..|.++.+||.-.++....+.+|.+  .|.++..+|||.-+++|+.|
T Consensus       271 ------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD  336 (343)
T KOG0286|consen  271 ------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD  336 (343)
T ss_pred             ------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence                        2234677788888888899999999999999999999999999887  88999999999999999999


Q ss_pred             ceEEEee
Q psy988          316 QCIYIWK  322 (408)
Q Consensus       316 g~i~iw~  322 (408)
                      ..++||.
T Consensus       337 s~lriW~  343 (343)
T KOG0286|consen  337 STLRIWA  343 (343)
T ss_pred             HheeecC
Confidence            9999994

>KOG0263|consensus

Probab=100.00  E-value=5.9e-42  Score=289.30  Aligned_cols=284  Identities=23%  Similarity=0.368  Sum_probs=231.3

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      +..++. -...++|..|++ |+..||.|-.|..|++|.+...+..   .++.-. .+         ..+=+.+.|-.+.+
T Consensus       370 c~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~---~lk~~~-~l---------~~~d~~sad~~~~~  435 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK---KLKDAS-DL---------SNIDTESADVDVDM  435 (707)
T ss_pred             EEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhc---cccchh-hh---------ccccccccchhhhh
Confidence            344444 456799999999 8999999999999999999876543   333211 11         11112333433455


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      .|-........        ..+|.++|..+.|+|+.++|+++++|+++|+|.+.+..+...+++|..+  +..+.|+|.|
T Consensus       436 ~D~~~~~~~~~--------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P~G  505 (707)
T KOG0263|consen  436 LDDDSSGTSRT--------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAPRG  505 (707)
T ss_pred             ccccCCceeEE--------eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecCCc
Confidence            55444332222        2367889999999999999999999999999999999999999988766  7789999999


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      -||++++.|++-++|....            ..+++.+.+|...|.|+.|+|+                           
T Consensus       506 yYFatas~D~tArLWs~d~------------~~PlRifaghlsDV~cv~FHPN---------------------------  546 (707)
T KOG0263|consen  506 YYFATASHDQTARLWSTDH------------NKPLRIFAGHLSDVDCVSFHPN---------------------------  546 (707)
T ss_pred             eEEEecCCCceeeeeeccc------------CCchhhhcccccccceEEECCc---------------------------
Confidence            9999999999999998843            4556667777776666666654                           


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                              ..|+++|+.|.++|+||..+|..++.|.+|..  +|++++|||+|++|++|+.||.|.+||+.++       
T Consensus       547 --------s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~--~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-------  609 (707)
T KOG0263|consen  547 --------SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG--PVTALAFSPCGRYLASGDEDGLIKIWDLANG-------  609 (707)
T ss_pred             --------ccccccCCCCceEEEEEcCCCcEEEEecCCCC--ceEEEEEcCCCceEeecccCCcEEEEEcCCC-------
Confidence                    55678999999999999999999999999876  8999999999999999999999999999998       


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                           .++..+.+|.+.|.++.|+.                ||..||+||.|.+|++||+......
T Consensus       610 -----~~v~~l~~Ht~ti~SlsFS~----------------dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  610 -----SLVKQLKGHTGTIYSLSFSR----------------DGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             -----cchhhhhcccCceeEEEEec----------------CCCEEEecCCCCeEEEEEchhhccc
Confidence                 78888999999999999999                9999999999999999999765544

>KOG0306|consensus

Probab=100.00  E-value=8e-41  Score=280.63  Aligned_cols=361  Identities=16%  Similarity=0.208  Sum_probs=280.9

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||.|+||+..++....++. |+..|+++.|.. .|..|++||.|+.|.+||+-.....  ..+.+|...|+..-|..+.
T Consensus        85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~E~Gl--~rL~GHkd~iT~~~F~~~~  161 (888)
T KOG0306|consen   85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVGEEGL--FRLRGHKDSITQALFLNGD  161 (888)
T ss_pred             cCceEEeeccCCCceeeeecccccceEEEEEcc-cCceEeecCCCccEEEEEeccceee--EEeecchHHHhHHhccCCC
Confidence            38999999999998888886 999999999999 9999999999999999999776655  6888898888888888878


Q ss_pred             CEEEEEecCCEEEEEeccCCe-----------------------------------------------------------
Q psy988           80 KFAVVGSYDGRCIFYTTDQLK-----------------------------------------------------------  100 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~-----------------------------------------------------------  100 (408)
                      +++++.+.|+.|++||+++..                                                           
T Consensus       162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r  241 (888)
T KOG0306|consen  162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR  241 (888)
T ss_pred             eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence            888888888888888876543                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy988          101 --------------------------------------------------------------------------------  100 (408)
Q Consensus       101 --------------------------------------------------------------------------------  100 (408)
                                                                                                      
T Consensus       242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~  321 (888)
T KOG0306|consen  242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA  321 (888)
T ss_pred             ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence                                                                                            


Q ss_pred             -------------e----------eEEEEEee---c---------cccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEE
Q psy988          101 -------------Y----------HTQIHVRS---T---------RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  145 (408)
Q Consensus       101 -------------~----------~~~~~~~~---~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  145 (408)
                                   .          ........   .         ....+|...|.+++++.+...+++|+ .+.+++|+
T Consensus       322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn  400 (888)
T KOG0306|consen  322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN  400 (888)
T ss_pred             heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence                         0          00000000   0         01234666777888876665555554 36788888


Q ss_pred             ccCcccceeecCcc--------------------------------------ccccceEEEEecCCCEEEEeecCceEEE
Q psy988          146 LRDLNLSCKYKGYV--------------------------------------NVSSQIKASFSHDGKYIVSGSENQCIYI  187 (408)
Q Consensus       146 ~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i  187 (408)
                      ..+.++++++....                                      +...+.+++.+||++.+++|+.|.+|++
T Consensus       401 ~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf  480 (888)
T KOG0306|consen  401 RDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF  480 (888)
T ss_pred             ccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence            87766655443111                                      2334667889999999999999999999


Q ss_pred             eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC-------CCCceeeecCCCceeeeeccCC
Q psy988          188 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-------SESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      ||..-.............-.......-...|.|+.++||+++++++.-+..       .......+.+|.-+|.++.++|
T Consensus       481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~  560 (888)
T KOG0306|consen  481 WDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP  560 (888)
T ss_pred             EeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence            998543220000000000000122234678999999999999998865544       3444556778999999999999


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      |++.+++|+.|..|++|-++-|.+.+.+-+|..  .|.++.|-|...++.+++.|+.|+-||-..-            +.
T Consensus       561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD--Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kF------------e~  626 (888)
T KOG0306|consen  561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD--SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF------------EE  626 (888)
T ss_pred             CcCeEEeccCCCceEEeccccchhhhhhhcccC--ceeEEEEcccceeEEEecCcceEEeechhhh------------hh
Confidence            999999999999999999999999999988876  8899999999999999999999999998765            68


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ++.+.+|...|++++.+|                +|.+++|++.|.+||+|.-..
T Consensus       627 iq~L~~H~~ev~cLav~~----------------~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  627 IQKLDGHHSEVWCLAVSP----------------NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             heeeccchheeeeeEEcC----------------CCCeEEeccCCceeEeeeccC
Confidence            889999999999999999                999999999999999998655

>KOG0318|consensus

Probab=100.00  E-value=2.3e-39  Score=261.20  Aligned_cols=359  Identities=16%  Similarity=0.199  Sum_probs=265.3

Q ss_pred             ceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            3 KTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      +.|.+-++++......+. |..+++-..|+| .|.|+|+|...|+|+|||....+.....+++...++|..++|++++++
T Consensus        39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~R  117 (603)
T KOG0318|consen   39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKR  117 (603)
T ss_pred             CEEEEEECCCccceeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcE
Confidence            457777888877777776 999999999999 899999999999999999987666666778888899999999999998


Q ss_pred             EEEEecC----CEEEEEeccCCee--------eEE--------E-----------------EEeeccccccCCCCeEEEe
Q psy988           82 AVVGSYD----GRCIFYTTDQLKY--------HTQ--------I-----------------HVRSTRGKNATGRKISGIE  124 (408)
Q Consensus        82 l~~~~~d----g~i~iw~~~~~~~--------~~~--------~-----------------~~~~~~~~~~~~~~v~~~~  124 (408)
                      +++.++.    |.+.+||..+..-        ...        +                 +++-......|..-|.|+.
T Consensus       118 I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR  197 (603)
T KOG0318|consen  118 IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR  197 (603)
T ss_pred             EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence            8877654    4677777543210        000        0                 0011112346778999999


Q ss_pred             eCCCCCeEEEeeCCCeEEEEEccCcccceeec-CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccC
Q psy988          125 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD  203 (408)
Q Consensus       125 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  203 (408)
                      |+|||.++++++.||.+.+||-.+++.+..+. ...+...+.+++|+||++.+++++.|.+++|||..+.....+.....
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~  277 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS  277 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence            99999999999999999999999999998887 23344568999999999999999999999999998764433222111


Q ss_pred             CCccccccccccceEEEEEEeCCcceeeee------cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEE
Q psy988          204 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLY  277 (408)
Q Consensus       204 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  277 (408)
                      .         -...-..+.|. ....+.+.      +-+........++.+|...|+++..+|++++|++|+.||.|.-|
T Consensus       278 ~---------v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  278 T---------VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             c---------hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            1         01111222232 22222111      11122333777888999999999999999999999999999999


Q ss_pred             EcCCCeeee-------------------------------EE--------------------------------------
Q psy988          278 DLRDLNLSC-------------------------------KY--------------------------------------  288 (408)
Q Consensus       278 d~~~~~~~~-------------------------------~~--------------------------------------  288 (408)
                      |..++..-+                               .+                                      
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            986542110                               00                                      


Q ss_pred             ----eecc------ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          289 ----KGYV------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       289 ----~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                          +.+.      -.....+++++|++..+|+|+.||.|+||.+..+..          .....+..|.++|+++++||
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l----------~ee~~~~~h~a~iT~vaySp  497 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL----------KEEAKLLEHRAAITDVAYSP  497 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc----------cceeeeecccCCceEEEECC
Confidence                0000      001223578999999999999999999999987532          22334567999999999999


Q ss_pred             CchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          359 CPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       359 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                                      |+.+||+|...+.|.+|++.+++.
T Consensus       498 ----------------d~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  498 ----------------DGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             ----------------CCcEEEEeccCCcEEEEEcccCce
Confidence                            999999999999999999998875

>KOG0291|consensus

Probab=100.00  E-value=2e-39  Score=272.46  Aligned_cols=340  Identities=15%  Similarity=0.244  Sum_probs=275.7

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC-CEEEEEeccCCe
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-GRCIFYTTDQLK  100 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~  100 (408)
                      ...|++.+|++ .-+.||+|-..|...+|++.+-.++  +.+.-...+|..++|+..|..|+.|+.. |.+.||+.+...
T Consensus       265 ~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~li--h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  265 SSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLI--HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             ccceeeeeccC-CceEEEEEecCCeeEEEecCCceEE--EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence            37899999999 8999999999999999999988777  5666666789999999999999998876 899999998766


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      .+...        .+|...+.+++++|||+++++|++||.|++||..++-+..++..|...  +..+.|+..|+.+++.+
T Consensus       342 YVlKQ--------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--Vt~v~f~~~g~~llssS  411 (893)
T KOG0291|consen  342 YVLKQ--------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--VTAVQFTARGNVLLSSS  411 (893)
T ss_pred             eeeec--------cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCc--eEEEEEEecCCEEEEee
Confidence            54433        356679999999999999999999999999999999999999988765  78899999999999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEeCCcceeeeecC--------CCCCCCceeeecCCCc
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAPCPELIIAQME--------PDKSESTGYVLNATGR  251 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  251 (408)
                      -||+|+.||+...            ...+++. .......|++..|.|..+.++..        ....+....++.+|.+
T Consensus       412 LDGtVRAwDlkRY------------rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg  479 (893)
T KOG0291|consen  412 LDGTVRAWDLKRY------------RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG  479 (893)
T ss_pred             cCCeEEeeeeccc------------ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence            9999999999642            2223333 23456789999999998887643        3446677778899999


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                      +|.+++|+|++..|++++.|.+|++||+-... ...+++.   ...+..++|+|||+-||++.-||.|.+||.+...+..
T Consensus       480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence            99999999999999999999999999987542 2233332   2367899999999999999999999999998765442


Q ss_pred             ccc--------ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          331 SSV--------RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       331 ~~~--------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      +--        +.........-.......+.+++++                ||+.|++||....|++|++.++-....+
T Consensus       557 ~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa----------------DG~~IlAgG~sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  557 SIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA----------------DGKCILAGGESNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             cccchhhccccccccceeehhhcccCCceEEEEEcC----------------CCCEEEecCCcccEEEEECchhheeeeE
Confidence            211        0111111111122346789999999                9999999999999999999998877777


Q ss_pred             ccc
Q psy988          403 PVS  405 (408)
Q Consensus       403 ~~s  405 (408)
                      ++|
T Consensus       621 qiS  623 (893)
T KOG0291|consen  621 QIS  623 (893)
T ss_pred             Eec
Confidence            665

>KOG0273|consensus

Probab=100.00  E-value=9.2e-41  Score=265.63  Aligned_cols=296  Identities=17%  Similarity=0.261  Sum_probs=241.0

Q ss_pred             eEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC------ceeeee------ecCCceeeEEEEEecCCCEEEE
Q psy988           17 CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK------VAVWNE------VEGQTKLITAANFCENGKFAVV   84 (408)
Q Consensus        17 ~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~------~~~~~~~v~~~~~~~~~~~l~~   84 (408)
                      +.+.|+.+|.+.+|+|....+|++|+.|-..++|++....      ......      -......|++++|+.+|..||+
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat  252 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT  252 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence            3445999999999999555589999999999999997511      110000      1112467999999999999999


Q ss_pred             EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccc
Q psy988           85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ  164 (408)
Q Consensus        85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  164 (408)
                      |+.||.+++|+.......         ....|.++|.++.|+..|.+|++++.|+++.+||..++...+.+..+...  .
T Consensus       253 G~~~G~~riw~~~G~l~~---------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~  321 (524)
T KOG0273|consen  253 GSEDGEARIWNKDGNLIS---------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--A  321 (524)
T ss_pred             eecCcEEEEEecCchhhh---------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--c
Confidence            999999999998764321         12346789999999999999999999999999999999988888776654  3


Q ss_pred             eEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      ..+.|-.+. .|++.+.|+.|+++.+..            ..+..++.+|.+.|.++.|+|.                  
T Consensus       322 lDVdW~~~~-~F~ts~td~~i~V~kv~~------------~~P~~t~~GH~g~V~alk~n~t------------------  370 (524)
T KOG0273|consen  322 LDVDWQSND-EFATSSTDGCIHVCKVGE------------DRPVKTFIGHHGEVNALKWNPT------------------  370 (524)
T ss_pred             cceEEecCc-eEeecCCCceEEEEEecC------------CCcceeeecccCceEEEEECCC------------------
Confidence            557776544 588999999999998854            3444556666666666666554                  


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC---------CEEEEecCC
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG---------KYIVSGSEN  315 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d  315 (408)
                                       +.+|++++.|++++||..........+..|..  .|..+.|+|+|         ..+++++.|
T Consensus       371 -----------------g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~l~sas~d  431 (524)
T KOG0273|consen  371 -----------------GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--EIYTIKWSPTGPVTSNPNMNLMLASASFD  431 (524)
T ss_pred             -----------------CceEEEecCCCeeEeeecCCCcchhhhhhhcc--ceeeEeecCCCCccCCCcCCceEEEeecC
Confidence                             56678999999999999988888888888766  78889999965         378999999


Q ss_pred             ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ++|++||+..+            .++..+..|..+|.+++|+|                +|++||+|+.||.|.+|+.++
T Consensus       432 stV~lwdv~~g------------v~i~~f~kH~~pVysvafS~----------------~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  432 STVKLWDVESG------------VPIHTLMKHQEPVYSVAFSP----------------NGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             CeEEEEEccCC------------ceeEeeccCCCceEEEEecC----------------CCcEEEecCCCCeeEeccccc
Confidence            99999999998            78888999999999999999                999999999999999999999


Q ss_pred             CCCccc
Q psy988          396 KPKHSS  401 (408)
Q Consensus       396 ~~~~~~  401 (408)
                      ++....
T Consensus       484 ~~l~~s  489 (524)
T KOG0273|consen  484 GKLVKS  489 (524)
T ss_pred             hheeEe
Confidence            886554

>KOG0291|consensus

Probab=100.00  E-value=5.2e-39  Score=269.94  Aligned_cols=348  Identities=19%  Similarity=0.306  Sum_probs=281.8

Q ss_pred             ceEEEEeccCCe--------eEeE-EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEE
Q psy988            3 KTVRLWHISRKE--------CLCC-FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAA   73 (408)
Q Consensus         3 g~i~vwd~~~~~--------~~~~-~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~   73 (408)
                      +.+.||......        ..++ ++|-+.|.++.|+. |.++|++|+.|.++++|.++..+-.....+.+|...|.+.
T Consensus       117 n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvac  195 (893)
T KOG0291|consen  117 NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVAC  195 (893)
T ss_pred             ceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEeccccccceEeccCCCcceEEE
Confidence            457788764321        1222 24999999999999 9999999999999999999887766567899999999999


Q ss_pred             EEecCCCEEEEEecCCEEEEEeccCC------------------------eeeEEEEEee--ccccccCCCCeEEEeeCC
Q psy988           74 NFCENGKFAVVGSYDGRCIFYTTDQL------------------------KYHTQIHVRS--TRGKNATGRKISGIEPMP  127 (408)
Q Consensus        74 ~~~~~~~~l~~~~~dg~i~iw~~~~~------------------------~~~~~~~~~~--~~~~~~~~~~v~~~~~~~  127 (408)
                      -|..+...+++.+.||.+.+|.....                        +.........  ..........+++.+|++
T Consensus       196 fF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~  275 (893)
T KOG0291|consen  196 FFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK  275 (893)
T ss_pred             EeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence            99999999999999999999987611                        0000000000  011122236899999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-ceEEEeeeccceeeeeecccCCCc
Q psy988          128 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-QCIYIWKTHHDYAKFSSVRRDRND  206 (408)
Q Consensus       128 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~  206 (408)
                      ..+.|+++-..|...+|++....++..+.-....  +..++|+..|.+|+.|+.. |.+-+|+.+..            .
T Consensus       276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~--I~t~~~N~tGDWiA~g~~klgQLlVweWqsE------------s  341 (893)
T KOG0291|consen  276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK--ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE------------S  341 (893)
T ss_pred             CceEEEEEecCCeeEEEecCCceEEEEeecccce--eeEEEecccCCEEEEcCCccceEEEEEeecc------------c
Confidence            9999999999999999999999988887765444  7789999999999998764 89999999763            4


Q ss_pred             cccccccccceEEEEEEeCCcceeeeecCCCC-------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEc
Q psy988          207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL  279 (408)
Q Consensus       207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  279 (408)
                      .+...++|...+++++++|||+.++++..+.+       ..-....+..|...++.+.|+..++.+++.+-||+|+.||+
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            44556889999999999999999999877765       33356778899999999999999999999999999999999


Q ss_pred             CCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc-eEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          280 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       280 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      ...+..+++..+. +....+++..|.|..+.+|+.|. .|.+|+++++            +++..+.||+++|.+++|+|
T Consensus       422 kRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------------qllDiLsGHEgPVs~l~f~~  488 (893)
T KOG0291|consen  422 KRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------------QLLDILSGHEGPVSGLSFSP  488 (893)
T ss_pred             cccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------------eeeehhcCCCCcceeeEEcc
Confidence            9999999988754 34567899999999999999886 6999999998            78899999999999999999


Q ss_pred             CchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          359 CPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       359 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                      ++..|+|+++|.+||+|++-
T Consensus       489 ----------------~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  489 ----------------DGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             ----------------ccCeEEeccccceEEEEEee
Confidence                            55555555555555555553

>KOG0285|consensus

Probab=100.00  E-value=2.1e-40  Score=254.92  Aligned_cols=299  Identities=16%  Similarity=0.298  Sum_probs=241.7

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      +..+.+. |.+.|.|+++.| .++++++|+.|++|+|||+.++++.  ..+.+|-..|..+++|+-..|+++++.|+.|+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             eehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEE--EeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            3344454 999999999999 8999999999999999999999987  69999999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      .||++..+.+...        .+|-+.|.|++.+|.-+.|++|+.|..+++||+++...+..+.+|...  +.++.+.|-
T Consensus       219 CwDLe~nkvIR~Y--------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~--V~~V~~~~~  288 (460)
T KOG0285|consen  219 CWDLEYNKVIRHY--------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP--VASVMCQPT  288 (460)
T ss_pred             EEechhhhhHHHh--------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc--ceeEEeecC
Confidence            9999987654433        356679999999999999999999999999999999999999998876  778888888


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      ...+++|+.|++|++||++.+...            ..+..|+..+.+++.                             
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~------------~tlt~hkksvral~l-----------------------------  327 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTM------------ITLTHHKKSVRALCL-----------------------------  327 (460)
T ss_pred             CCceEEecCCceEEEeeeccCcee------------EeeecccceeeEEec-----------------------------
Confidence            888999999999999999765322            234444555555544                             


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                            +|....+++++.|. |+-|++..+..+..+.+|..  .+.+++...|| ++++|+++|.+.+||.+++..-...
T Consensus       328 ------hP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  328 ------HPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             ------CCchhhhhccCCcc-ceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence                  55555677777775 99999999999988888765  66777777664 7889999999999999987321100


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      ....++   ..+ ..+..|.+.+|..                .|..|+||..|.+|++|.-...
T Consensus       398 ~t~vqp---GSl-~sEagI~as~fDk----------------tg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  398 QTIVQP---GSL-ESEAGIFASCFDK----------------TGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             cccccC---Ccc-ccccceeEEeecc----------------cCceEEeccCCcceEEEecccc
Confidence            000000   001 1346789999998                8999999999999999986543

>KOG0266|consensus

Probab=100.00  E-value=1.4e-39  Score=281.98  Aligned_cols=292  Identities=23%  Similarity=0.413  Sum_probs=245.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC-
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL-   99 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-   99 (408)
                      |...|.++.|+| +|+++++++.|+.+++|+..+........+.+|...|..++|+|+++++++++.|++|++||+... 
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence            588999999999 999999999999999999977662222567899999999999999999999999999999999433 


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      .....+        .+|...|++++|+|+++.+++|+.|++|++||++++++...+.+|...  +.+++|++++++|+++
T Consensus       237 ~~~~~l--------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  237 RNLKTL--------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVSA  306 (456)
T ss_pred             eEEEEe--------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEEc
Confidence            332222        367789999999999999999999999999999999999999998875  7789999999999999


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      +.|+.|++||+.++...          +...+..+..                                .. .++.+.|+
T Consensus       307 s~d~~i~vwd~~~~~~~----------~~~~~~~~~~--------------------------------~~-~~~~~~fs  343 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKL----------CLKLLSGAEN--------------------------------SA-PVTSVQFS  343 (456)
T ss_pred             CCCccEEEEECCCCcee----------eeecccCCCC--------------------------------CC-ceeEEEEC
Confidence            99999999999765311          0111111111                                11 46667777


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce-eceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV-SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      |++.+++++..|+.+++||+..++....+.+|... ..+.+...++.++++++|+.|+.|++|++.++            
T Consensus       344 p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~------------  411 (456)
T KOG0266|consen  344 PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG------------  411 (456)
T ss_pred             CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc------------
Confidence            78888899999999999999999999999988764 24445566889999999999999999999986            


Q ss_pred             ccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe--cCCeEEEEeCC
Q psy988          339 DFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD--FNGVIRVFLNK  394 (408)
Q Consensus       339 ~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~v~iw~~~  394 (408)
                      ..+..+.+| ...+..+.++|                ..+++++++  .|+.+++|..+
T Consensus       412 ~~~~~l~~h~~~~~~~~~~~~----------------~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  412 GILQRLEGHSKAAVSDLSSHP----------------TENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             chhhhhcCCCCCceeccccCC----------------CcCeeeecCcCCCceEEEecCC
Confidence            677888899 89999999999                899999998  69999999864

>KOG0316|consensus

Probab=100.00  E-value=9.9e-40  Score=237.07  Aligned_cols=284  Identities=18%  Similarity=0.211  Sum_probs=237.2

Q ss_pred             eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEe
Q psy988           17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~   95 (408)
                      ..+. |+++|.++.|+- +|+|.++++.|.+|++|+...+.++  ++..+|...|..++.+.|...+++|+.|..+.+||
T Consensus        11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~li--ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALI--KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccccee--eeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            4444 999999999999 9999999999999999999999877  79999999999999999999999999999999999


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc--cceeecCccccccceEEEEecCC
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      +.+++....+.        +|...|+.+.|+.+...+++|+.|..+++||-++..  +++.+.....  .+.++..  .+
T Consensus        88 V~TGkv~Rr~r--------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--~V~Si~v--~~  155 (307)
T KOG0316|consen   88 VNTGKVDRRFR--------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDV--AE  155 (307)
T ss_pred             cccCeeeeecc--------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC--ceeEEEe--cc
Confidence            99998755443        677899999999999999999999999999998654  4555544333  3555555  45


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      ..|++|+.||+++.||++.+....                                                 ...+.+|
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~s-------------------------------------------------Dy~g~pi  186 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSS-------------------------------------------------DYFGHPI  186 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeeh-------------------------------------------------hhcCCcc
Confidence            679999999999999998653211                                                 1234566


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                      +++.|+++++..++++.|+++++.|-.+|+++..+.+|.+...-..++++....++++|++||.|++||+...       
T Consensus       187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-------  259 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-------  259 (307)
T ss_pred             eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc-------
Confidence            7777777788888999999999999999999999999999888888999999999999999999999999886       


Q ss_pred             ccCccccceeeeeeccc-eEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          334 RRDRNDFWEGIKAHNAV-VTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                           ..+..+..+... |.+++++|                ...-|+++. ++.+..|.-
T Consensus       260 -----~~~sk~~~~~~v~v~dl~~hp----------------~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  260 -----TQISKLSVVSTVIVTDLSCHP----------------TMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             -----eeeeeeccCCceeEEeeeccc----------------CccceeEec-CCceeceee
Confidence                 566667777776 89999999                666666665 455666653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.4e-38  Score=265.25  Aligned_cols=283  Identities=23%  Similarity=0.415  Sum_probs=235.2

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +|.++|.+++|+| ++++|++++.||.|++|++.+++..  ..+..|...+..+.|+|+++++++++.+|.+++|++.+.
T Consensus         7 ~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           7 GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             ccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            4999999999999 8999999999999999999988754  577889999999999999999999999999999999876


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      +......        .+...+.++.|+|++..+++++.++.|++||+++++....+..+..  .+.++.|+|++.+++++
T Consensus        84 ~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~  153 (289)
T cd00200          84 ECVRTLT--------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--WVNSVAFSPDGTFVASS  153 (289)
T ss_pred             cceEEEe--------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC--cEEEEEEcCcCCEEEEE
Confidence            4433322        3445899999999988888888899999999998887777775543  47889999999988888


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      +.++.|++||++.+.            ....+..+                                   ...+.++.|+
T Consensus       154 ~~~~~i~i~d~~~~~------------~~~~~~~~-----------------------------------~~~i~~~~~~  186 (289)
T cd00200         154 SQDGTIKLWDLRTGK------------CVATLTGH-----------------------------------TGEVNSVAFS  186 (289)
T ss_pred             cCCCcEEEEEccccc------------cceeEecC-----------------------------------ccccceEEEC
Confidence            889999999986421            11222233                                   3345556666


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccc
Q psy988          260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND  339 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  339 (408)
                      |+++.+++++.++.|++||++.++....+..+..  .+.+++|+|++.++++++.||.|++|++.++            .
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------------~  252 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG------------E  252 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc------------e
Confidence            6676778888899999999999888887766544  7889999999999999988999999999875            4


Q ss_pred             cceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          340 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       340 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      ....+..|...|.+++|+|                ++++|++++.||.|++|+
T Consensus       253 ~~~~~~~~~~~i~~~~~~~----------------~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         253 CVQTLSGHTNSVTSLAWSP----------------DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEccccCCcEEEEEECC----------------CCCEEEEecCCCeEEecC
Confidence            5566778999999999999                899999999999999996

>KOG0281|consensus

Probab=100.00  E-value=7.9e-41  Score=256.56  Aligned_cols=283  Identities=19%  Similarity=0.299  Sum_probs=234.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ....|+|+.+   |...+++|..|++|+|||..+..+.  ..+.+|++.|.|+.|  +.+.+++|+.|.+|++||+++++
T Consensus       196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~--~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECL--KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEe---cchhhhcccccCceEEeccccHHHH--HhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence            5678999999   5567999999999999999888777  789999999999999  55699999999999999999987


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc---cceeecCccccccceEEEEecCCCEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN---LSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      ....+        .+|...|..+.|+  +.++++++.|.++.+||+....   +...+.+|...  +..+.|  +.++++
T Consensus       269 ~l~tl--------ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa--VNvVdf--d~kyIV  334 (499)
T KOG0281|consen  269 PLNTL--------IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDF--DDKYIV  334 (499)
T ss_pred             hhhHH--------hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh--eeeecc--ccceEE
Confidence            65433        3566789999997  6799999999999999997654   33445666654  555666  466999


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +++.|.+|++|++.+            ..+++.+.+|+..|.|+.+                                  
T Consensus       335 sASgDRTikvW~~st------------~efvRtl~gHkRGIAClQY----------------------------------  368 (499)
T KOG0281|consen  335 SASGDRTIKVWSTST------------CEFVRTLNGHKRGIACLQY----------------------------------  368 (499)
T ss_pred             EecCCceEEEEeccc------------eeeehhhhcccccceehhc----------------------------------
Confidence            999999999999965            4566778888888777765                                  


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  337 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  337 (408)
                         .++++++|+.|.+|++||+..|.+++.+++|..  -|.++.|  |.+.+++|+.||+|++||+..+..+..   ...
T Consensus       369 ---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra---~~~  438 (499)
T KOG0281|consen  369 ---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRA---PAS  438 (499)
T ss_pred             ---cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccccCCcc---ccc
Confidence               367889999999999999999999999999877  6778888  678999999999999999998754321   112


Q ss_pred             cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      .-++..+..|.+.|..+.|                  |...+++++.|.+|-|||+..+..
T Consensus       439 ~~Cl~~lv~hsgRVFrLQF------------------D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  439 TLCLRTLVEHSGRVFRLQF------------------DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             chHHHhhhhccceeEEEee------------------cceEEEeccCCCeEEEEEcCCCCc
Confidence            2466777889999999999                  557899999999999999977653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.4e-38  Score=293.71  Aligned_cols=313  Identities=14%  Similarity=0.230  Sum_probs=235.5

Q ss_pred             CceEEEEeccCCeeEeEE------EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----c--eeeeeecCCcee
Q psy988            2 DKTVRLWHISRKECLCCF------QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK----V--AVWNEVEGQTKL   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~------~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~----~--~~~~~~~~~~~~   69 (408)
                      +|.+++|+..+.+....+      .|.+.|.+++|+| ++++||+|+.|+.|+||+.....    .  .....+. +...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCc
Confidence            566788888766554433      2899999999999 99999999999999999975421    1  0112223 3467


Q ss_pred             eEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEcc
Q psy988           70 ITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        70 v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~  147 (408)
                      +.+++|++ ++.+|++++.||+|++||+.+.+....+        ..|...|.+++|+| ++.+|++|+.|+.|++||++
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~--------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM--------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            89999987 4789999999999999999887644332        24667999999997 78899999999999999999


Q ss_pred             CcccceeecCccccccceEEEEe-cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          148 DLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      ++..+..+..+   ..+.++.|+ +++.+|++|+.||.|++||++...           .....+.+|...|.++.|.  
T Consensus       607 ~~~~~~~~~~~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-----------~~~~~~~~h~~~V~~v~f~--  670 (793)
T PLN00181        607 QGVSIGTIKTK---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-----------LPLCTMIGHSKTVSYVRFV--  670 (793)
T ss_pred             CCcEEEEEecC---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-----------ccceEecCCCCCEEEEEEe--
Confidence            88877776543   347788885 578999999999999999986431           1122334555555555553  


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC------eeeeEEeeccceeceeEE
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL------NLSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~v~~~  300 (408)
                                                        ++.+|++++.|++|++||++.+      +++..+.+|..  .+..+
T Consensus       671 ----------------------------------~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v  714 (793)
T PLN00181        671 ----------------------------------DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFV  714 (793)
T ss_pred             ----------------------------------CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEE
Confidence                                              3556889999999999999743      56677777755  67789


Q ss_pred             EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccc--eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccE
Q psy988          301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW--EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV  378 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~  378 (408)
                      +|+|++++|++|+.|+.|++|+............... ..+  .....|...|.+++|+|                ++..
T Consensus       715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~V~~v~ws~----------------~~~~  777 (793)
T PLN00181        715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTI-DPVSGLEVDDASQFISSVCWRG----------------QSST  777 (793)
T ss_pred             EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccC-CcccccccCCCCcEEEEEEEcC----------------CCCe
Confidence            9999999999999999999999765422211000000 000  11234667899999999                9999


Q ss_pred             EEEEecCCeEEEEeC
Q psy988          379 LVSADFNGVIRVFLN  393 (408)
Q Consensus       379 l~s~~~dg~v~iw~~  393 (408)
                      |++|+.||.|+||++
T Consensus       778 lva~~~dG~I~i~~~  792 (793)
T PLN00181        778 LVAANSTGNIKILEM  792 (793)
T ss_pred             EEEecCCCcEEEEec
Confidence            999999999999996

>KOG0295|consensus

Probab=100.00  E-value=3.2e-39  Score=248.73  Aligned_cols=261  Identities=19%  Similarity=0.304  Sum_probs=225.1

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |++|++||..++++...++ |.+.|.+++|+. .|++||+++.|-.+++||.++. ....+.+.+|...|.++.|-|.|.
T Consensus       129 d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd  206 (406)
T KOG0295|consen  129 DATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGD  206 (406)
T ss_pred             CceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCC
Confidence            8899999999999988887 999999999999 9999999999999999999874 333478889999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      ++++++.|.+|+.|++.++.....+.        +|...|..+..+.||..+++++.|.+|++|-+.++++...+..|.+
T Consensus       207 ~ilS~srD~tik~We~~tg~cv~t~~--------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh  278 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGYCVKTFP--------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH  278 (406)
T ss_pred             eeeecccccceeEEecccceeEEecc--------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc
Confidence            99999999999999999987765544        4556899999999999999999999999999999998888998887


Q ss_pred             cccceEEEEecC---------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          161 VSSQIKASFSHD---------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       161 ~~~~~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      .  +-+++|.|.               +.++.+++.|++|++||+.++.            ++.++.+|           
T Consensus       279 ~--vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~------------cL~tL~gh-----------  333 (406)
T KOG0295|consen  279 P--VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM------------CLFTLVGH-----------  333 (406)
T ss_pred             c--eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe------------EEEEEecc-----------
Confidence            7  446666542               3589999999999999997653            33334444           


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                                              ...|..++|+|.|+||+++..|+++++||++++++...+..|.+  .++++.|..+
T Consensus       334 ------------------------dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~  387 (406)
T KOG0295|consen  334 ------------------------DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKT  387 (406)
T ss_pred             ------------------------cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCC
Confidence                                    44555555566677789999999999999999999999998777  7889999999


Q ss_pred             CCEEEEecCCceEEEeec
Q psy988          306 GKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       306 ~~~l~~~~~dg~i~iw~~  323 (408)
                      ..++++|+-|..+++|.-
T Consensus       388 ~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  388 APYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CceEEeccccceeeeeec
Confidence            999999999999999963

>KOG0306|consensus

Probab=100.00  E-value=4.2e-38  Score=264.37  Aligned_cols=358  Identities=18%  Similarity=0.238  Sum_probs=272.5

Q ss_pred             eEEEEeccCCeeEeEE---EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.+||+.+++..+.+   +-...|+|++-+| +..+||.|-.||.|+||+..++...  ..+.+|...|+.+.|...|.
T Consensus        44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~--~tfngHK~AVt~l~fd~~G~  120 (888)
T KOG0306|consen   44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEIL--ITFNGHKAAVTTLKFDKIGT  120 (888)
T ss_pred             cEeEEeeecchhhhhhhhhcccceEEEeeccC-CcceEEEEecCceEEeeccCCCcee--eeecccccceEEEEEcccCc
Confidence            5789999999555444   3556899999999 9999999999999999999988655  68999999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc-
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-  159 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  159 (408)
                      .|++|+.|+.|.+||+-.......+.        +|...|+.+-|..+.+.+++.+.|+.|++||+++..+..+...|. 
T Consensus       121 rlaSGskDt~IIvwDlV~E~Gl~rL~--------GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~  192 (888)
T KOG0306|consen  121 RLASGSKDTDIIVWDLVGEEGLFRLR--------GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRG  192 (888)
T ss_pred             eEeecCCCccEEEEEeccceeeEEee--------cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccc
Confidence            99999999999999997655433332        455667777776666677777777777777775533211110000 


Q ss_pred             --------------------------------------------------------------------------------
Q psy988          160 --------------------------------------------------------------------------------  159 (408)
Q Consensus       160 --------------------------------------------------------------------------------  159 (408)
                                                                                                      
T Consensus       193 Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~fr  272 (888)
T KOG0306|consen  193 EIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFR  272 (888)
T ss_pred             eEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhhee
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy988          160 --------------------------------------------------------------------------------  159 (408)
Q Consensus       160 --------------------------------------------------------------------------------  159 (408)
                                                                                                      
T Consensus       273 I~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~  352 (888)
T KOG0306|consen  273 IRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLE  352 (888)
T ss_pred             ecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEec
Confidence                                                                                            


Q ss_pred             -------------------ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecc-------------------
Q psy988          160 -------------------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR-------------------  201 (408)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------  201 (408)
                                         +...+.+++++.+...+++|+ .+.+++|+..+.+...+...                   
T Consensus       353 ~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~  431 (888)
T KOG0306|consen  353 NSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGT  431 (888)
T ss_pred             cCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEec
Confidence                               112244555665555555553 46788888775543322111                   


Q ss_pred             ---------cCCCccccccccccceEEEEEEeCCcceeeeecCCCC------------CCCceeeec-------CCCcee
Q psy988          202 ---------RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------------SESTGYVLN-------ATGRKI  253 (408)
Q Consensus       202 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-------~~~~~i  253 (408)
                               ......+...+.|.+.+.+++.+||++.++.+..+..            .......+.       .-...|
T Consensus       432 k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv  511 (888)
T KOG0306|consen  432 KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV  511 (888)
T ss_pred             cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence                     0122445667789999999999999999887644322            111111111       234679


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                      .++.+|||+++|+++--|.+++||-+++.+....+-+|.-  +|.++..|||++++++|+.|.+|+||-++-+       
T Consensus       512 L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL--PV~smDIS~DSklivTgSADKnVKiWGLdFG-------  582 (888)
T KOG0306|consen  512 LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL--PVLSMDISPDSKLIVTGSADKNVKIWGLDFG-------  582 (888)
T ss_pred             EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc--ceeEEeccCCcCeEEeccCCCceEEeccccc-------
Confidence            9999999999999999999999999999998888888766  8999999999999999999999999999987       


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                           .+-..+-+|.+.|.++.|-|                ...++.|+|.||.|+-||-...+....++
T Consensus       583 -----DCHKS~fAHdDSvm~V~F~P----------------~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  583 -----DCHKSFFAHDDSVMSVQFLP----------------KTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             -----hhhhhhhcccCceeEEEEcc----------------cceeEEEecCcceEEeechhhhhhheeec
Confidence                 78888999999999999999                88999999999999999987766655543

>KOG0284|consensus

Probab=100.00  E-value=1e-39  Score=255.11  Aligned_cols=262  Identities=16%  Similarity=0.264  Sum_probs=222.7

Q ss_pred             ceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC-CceeeEEEEEecCCC
Q psy988            3 KTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-QTKLITAANFCENGK   80 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~   80 (408)
                      |.+.+|+..+-.....++ |..+|+++.|++ ++.++++|+.+|.|++|+..-..+.   ..+. |...|++++|+|+..
T Consensus       118 GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnVk---~~~ahh~eaIRdlafSpnDs  193 (464)
T KOG0284|consen  118 GEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNVK---IIQAHHAEAIRDLAFSPNDS  193 (464)
T ss_pred             ccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhhH---HhhHhhhhhhheeccCCCCc
Confidence            678888875555555555 999999999999 9999999999999999998766554   4444 458999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      .+++++.||+|+|||....+....+        .+|+-.|.+++|+|....+++++.|..|++||.++++++.++..|.+
T Consensus       194 kF~t~SdDg~ikiWdf~~~kee~vL--------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn  265 (464)
T KOG0284|consen  194 KFLTCSDDGTIKIWDFRMPKEERVL--------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN  265 (464)
T ss_pred             eeEEecCCCeEEEEeccCCchhhee--------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence            9999999999999998876543333        46778999999999999999999999999999999999999888776


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      .  |+.+.|++++++|++++.|..+++||+++.            +.+..+++|...++++.|+|-...+          
T Consensus       266 t--Vl~~~f~~n~N~Llt~skD~~~kv~DiR~m------------kEl~~~r~Hkkdv~~~~WhP~~~~l----------  321 (464)
T KOG0284|consen  266 T--VLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------------KELFTYRGHKKDVTSLTWHPLNESL----------  321 (464)
T ss_pred             e--EEEEEEcCCCCeeEEccCCceEEEEehhHh------------HHHHHhhcchhhheeeccccccccc----------
Confidence            5  889999999999999999999999999742            4456788899999999999876655          


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI  320 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  320 (408)
                                              |.+|+.||.|..|.+...+++..+. +.+...|.+++|+|-|..|++|+.|.++++
T Consensus       322 ------------------------ftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  322 ------------------------FTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             ------------------------eeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceee
Confidence                                    7889999999999998555544443 345558999999999999999999999999


Q ss_pred             eeccc
Q psy988          321 WKTHH  325 (408)
Q Consensus       321 w~~~~  325 (408)
                      |.-..
T Consensus       377 w~r~r  381 (464)
T KOG0284|consen  377 WTRNR  381 (464)
T ss_pred             eccCC
Confidence            98654

>KOG0643|consensus

Probab=100.00  E-value=2e-37  Score=229.30  Aligned_cols=302  Identities=17%  Similarity=0.202  Sum_probs=240.4

Q ss_pred             eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           15 CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        15 ~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      ++...+|+.+++.+.++. +|.+|++++.|.+..+|--.+|+.+  -++.+|.+.|.++....+.+++++|+.|.++++|
T Consensus         3 pi~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerl--Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERL--GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCcee--eeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence            345556999999999999 9999999999999999998888876  7999999999999999999999999999999999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-----CCeEEEEEccC-------cccceeecCccccc
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-----DSRIRLYDLRD-------LNLSCKYKGYVNVS  162 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-------~~~~~~~~~~~~~~  162 (408)
                      |+++++........         .+|..+.|++++++++.+..     .+.|.++|++.       .++...+..+.  .
T Consensus        80 Dv~tGk~la~~k~~---------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--s  148 (327)
T KOG0643|consen   80 DVETGKQLATWKTN---------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--S  148 (327)
T ss_pred             EcCCCcEEEEeecC---------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--c
Confidence            99999988777654         38999999999998887743     56899999983       34444554444  4


Q ss_pred             cceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          163 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                      .+..+.|.|-+++|++|.+||.|..||.+++.....                                            
T Consensus       149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~--------------------------------------------  184 (327)
T KOG0643|consen  149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVD--------------------------------------------  184 (327)
T ss_pred             ceeeeeecccCCEEEEecCCCcEEEEEcccCceeee--------------------------------------------
Confidence            577899999999999999999999999987532211                                            


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEee
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  322 (408)
                        ....|...|+.++++||..++++++.|.+-++||..+.++++++...   .++.+.+++|...+++.|+....--+--
T Consensus       185 --s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te---~PvN~aaisP~~d~VilgGGqeA~dVTT  259 (327)
T KOG0643|consen  185 --SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE---RPVNTAAISPLLDHVILGGGQEAMDVTT  259 (327)
T ss_pred             --chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec---ccccceecccccceEEecCCceeeeeee
Confidence              11245567777888888889999999999999999999999888763   4788999999888888776543322222


Q ss_pred             ccccCccc--cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          323 THHDYAKF--SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       323 ~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ......++  ........+.+...++|-++|++++|+|                +|+..+||+.||.||+.....
T Consensus       260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP----------------dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP----------------DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ecccccchhhhHHHHHHHHHhccccccccCcceeEECC----------------CCcccccCCCCceEEEEEecc
Confidence            22111111  0011111245677899999999999999                999999999999999986653

>KOG0276|consensus

Probab=100.00  E-value=1.1e-37  Score=256.69  Aligned_cols=282  Identities=19%  Similarity=0.294  Sum_probs=242.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |.+.|.++.|+| ...+++++-.+|.|.||+.++....  +.+.-..-+|++..|-+..+.+++|+.|..|++|+..+.+
T Consensus        12 rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmV--ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen   12 RSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMV--KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             cCCceeeeecCC-CCceEEEeeecCeeEEEecccceee--eeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            899999999999 8999999999999999999998877  6777778899999999999999999999999999999988


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccccccceEEEEec-CCCEEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSH-DGKYIVS  178 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  178 (408)
                      .+..+.        +|...|.+++.+|...++++++.|-.|++||.+.. .+.+.+.+|.+-  +++++|.| |.+.+++
T Consensus        89 kV~~Fe--------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy--VMqv~fnPkD~ntFaS  158 (794)
T KOG0276|consen   89 KVKTFE--------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY--VMQVAFNPKDPNTFAS  158 (794)
T ss_pred             eeEEee--------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE--EEEEEecCCCccceee
Confidence            766655        67789999999999999999999999999999864 467788998876  88999999 6688999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      ++-|++|++|.+...            .+..++.+|...|+|+.+-+-|                               
T Consensus       159 ~sLDrTVKVWslgs~------------~~nfTl~gHekGVN~Vdyy~~g-------------------------------  195 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSP------------HPNFTLEGHEKGVNCVDYYTGG-------------------------------  195 (794)
T ss_pred             eeccccEEEEEcCCC------------CCceeeeccccCcceEEeccCC-------------------------------
Confidence            999999999999653            3445677888888888776643                               


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                        |..+|++|+.|.+|+|||..+..+++++.+|.+  .|..+.|+|.-..+++|++||+++||+..+-            
T Consensus       196 --dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty------------  259 (794)
T KOG0276|consen  196 --DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY------------  259 (794)
T ss_pred             --CcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce------------
Confidence              345789999999999999999999999999988  7889999999999999999999999998875            


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV  390 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i  390 (408)
                      ++...+.---.+|+|++-.+                .++.++.|.+.|.|.+
T Consensus       260 ~lE~tLn~gleRvW~I~~~k----------------~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  260 KLEKTLNYGLERVWCIAAHK----------------GDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ehhhhhhcCCceEEEEeecC----------------CCCeEEEeccCCcEEE
Confidence            44455555667899999988                5566777766665543

>KOG0645|consensus

Probab=100.00  E-value=9.1e-37  Score=226.19  Aligned_cols=262  Identities=20%  Similarity=0.336  Sum_probs=210.6

Q ss_pred             CceEEEEeccC---CeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISR---KECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~---~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      |+.|+||+...   ..+...+.  |+..|++++|+| .|++||+||.|.++.||.-..++......+.+|...|.+++|+
T Consensus        36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws  114 (312)
T KOG0645|consen   36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS  114 (312)
T ss_pred             CceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc
Confidence            78999999984   45555554  999999999999 9999999999999999999988888889999999999999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---cccce
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---LNLSC  153 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~  153 (408)
                      ++|.+||+++.|..|-||.+..........     ....|...|..+.|+|....|++++.|++|++|+-..   -.+.+
T Consensus       115 ~sG~~LATCSRDKSVWiWe~deddEfec~a-----VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~  189 (312)
T KOG0645|consen  115 ASGNYLATCSRDKSVWIWEIDEDDEFECIA-----VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ  189 (312)
T ss_pred             CCCCEEEEeeCCCeEEEEEecCCCcEEEEe-----eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEE
Confidence            999999999999999999998655433322     2345677899999999999999999999999998762   34677


Q ss_pred             eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  233 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  233 (408)
                      ++.++..  .+.+++|++.|..|++++.|++++||.....                .-..|...+..+.|.         
T Consensus       190 tl~g~~~--TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----------------~~~~~sr~~Y~v~W~---------  242 (312)
T KOG0645|consen  190 TLDGHEN--TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----------------LSGMHSRALYDVPWD---------  242 (312)
T ss_pred             EecCccc--eEEEEEecCCCceEEEecCCcceEeeeeccC----------------cchhcccceEeeeec---------
Confidence            7887765  4889999999999999999999999985321                112334455555554         


Q ss_pred             cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE-----eeccceeceeEEEEcCC-CC
Q psy988          234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-----KGYVNVSSQIKASFSHD-GK  307 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~v~~~~~s~~-~~  307 (408)
                                                  ...|++++.|+.|++|.-...-....+     ..+.+...|.++.|.|. .+
T Consensus       243 ----------------------------~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~  294 (312)
T KOG0645|consen  243 ----------------------------NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN  294 (312)
T ss_pred             ----------------------------ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence                                        345899999999999986542111111     12234448999999994 78


Q ss_pred             EEEEecCCceEEEeecc
Q psy988          308 YIVSGSENQCIYIWKTH  324 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~  324 (408)
                      +|++|+.||.|++|.+.
T Consensus       295 ~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  295 RLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceeecCCCceEEEEEec
Confidence            99999999999999874

>KOG0263|consensus

Probab=100.00  E-value=6.5e-38  Score=264.99  Aligned_cols=285  Identities=15%  Similarity=0.234  Sum_probs=220.2

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      |..|++|.+...++ +.+.+..      +-+    .+=+.+.|-.+.+-|..+....  ..+.+|.++|..+.|+|+.++
T Consensus       399 dS~i~~~Sl~p~kl-~~lk~~~------~l~----~~d~~sad~~~~~~D~~~~~~~--~~L~GH~GPVyg~sFsPd~rf  465 (707)
T KOG0263|consen  399 DSSVRVWSLTPKKL-KKLKDAS------DLS----NIDTESADVDVDMLDDDSSGTS--RTLYGHSGPVYGCSFSPDRRF  465 (707)
T ss_pred             ccEEEEEecchhhh-ccccchh------hhc----cccccccchhhhhccccCCcee--EEeecCCCceeeeeecccccc
Confidence            56777787765432 2222221      111    1223444545666666655544  679999999999999999999


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV  161 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  161 (408)
                      |++++.|+++++|.+++........        +|..+|.++.|+|.|-++++++.|++-++|......+.+.+.+|...
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYK--------GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEec--------CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence            9999999999999999876544332        66789999999999999999999999999999999999999998876


Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                        +.|+.|+|+..|+++|+.|.++++||..++.            .++.+.+                            
T Consensus       538 --V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------------~VRiF~G----------------------------  575 (707)
T KOG0263|consen  538 --VDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------------SVRIFTG----------------------------  575 (707)
T ss_pred             --cceEEECCcccccccCCCCceEEEEEcCCCc------------EEEEecC----------------------------
Confidence              7789999999999999999999999997642            2333444                            


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEe
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW  321 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  321 (408)
                             |.++|++++|||+|++|++|+.||.|.+||+.+++++..+.+|.+  .+.++.||.||..||+|+.|++|++|
T Consensus       576 -------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  576 -------HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             -------CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEE
Confidence                   445555555555677789999999999999999999999999854  89999999999999999999999999


Q ss_pred             eccccCcccccc------------ccCccccceeeeeeccceEEEEecC
Q psy988          322 KTHHDYAKFSSV------------RRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       322 ~~~~~~~~~~~~------------~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      |+..........            ......++..+..-..+|.++.|..
T Consensus       647 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr  695 (707)
T KOG0263|consen  647 DLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR  695 (707)
T ss_pred             EchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec
Confidence            987643330000            0112235556666677899999987

>KOG0292|consensus

Probab=100.00  E-value=3.3e-37  Score=263.69  Aligned_cols=315  Identities=15%  Similarity=0.210  Sum_probs=252.6

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .+..|..++|+| ...+++++-..|.|++||.+-+.++  ..+..|.++|..+.|+|.+.++++|+.|-.|++|+..+.+
T Consensus         8 kSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli--~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    8 KSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             ccccccceecCC-CCCEEEEeecCceeeeehhhhhhHH--hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            567899999999 8999999999999999999988877  7899999999999999999999999999999999999876


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ....+        .+|-..|..+.|++.-..+++++.|.+|+||+..+.+++..+.+|.+-  |+|..|+|....+++++
T Consensus        85 clftL--------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY--VMcAqFhptEDlIVSaS  154 (1202)
T KOG0292|consen   85 CLFTL--------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY--VMCAQFHPTEDLIVSAS  154 (1202)
T ss_pred             ehhhh--------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE--EEeeccCCccceEEEec
Confidence            54443        366789999999999999999999999999999999999999999876  88999999999999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      -|.+|++||+..-......+.    ..-..+.+              .......-....--...++.+|+..|.-++|+|
T Consensus       155 LDQTVRVWDisGLRkk~~~pg----~~e~~~~~--------------~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPG----SLEDQMRG--------------QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             ccceEEEEeecchhccCCCCC----Cchhhhhc--------------cccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            999999999864211110000    00000000              000000011112233456789999999999999


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCee--eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      .-..|++|+.|..|++|.+...+.  +-+..+|.+  .|.++-|+|...++++.++|++|++||+...            
T Consensus       217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSnsEDksirVwDm~kR------------  282 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSNSEDKSIRVWDMTKR------------  282 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccccceeehhhhcccC--CcceEEecCccceeEecCCCccEEEEecccc------------
Confidence            999999999999999999886553  344567766  8889999999999999999999999999876            


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ..+++++...++-+.++-+|                ..+++|.|. |+-+.+|.+...+
T Consensus       283 t~v~tfrrendRFW~laahP----------------~lNLfAAgH-DsGm~VFkleREr  324 (1202)
T KOG0292|consen  283 TSVQTFRRENDRFWILAAHP----------------ELNLFAAGH-DSGMIVFKLERER  324 (1202)
T ss_pred             cceeeeeccCCeEEEEEecC----------------Ccceeeeec-CCceEEEEEcccC
Confidence            56777877788899999999                666666554 5556666666433

>KOG0285|consensus

Probab=100.00  E-value=4.5e-37  Score=236.63  Aligned_cols=253  Identities=17%  Similarity=0.276  Sum_probs=220.6

Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      .+.+.+|.+.|.++++.|.+.+|++|+.|+++.|||+.+++....+.        +|...|..+++++...++++++.|+
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt--------Ghi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT--------GHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec--------chhheeeeeeecccCceEEEecCCC
Confidence            35678999999999999999999999999999999999998755543        4556899999999999999999999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      .|+.||++..+.++.+-+|...  +.+++.+|.-..|++|+.|..+++||+++.            ..+..+.+|..+|.
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~--V~~L~lhPTldvl~t~grDst~RvWDiRtr------------~~V~~l~GH~~~V~  281 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSG--VYCLDLHPTLDVLVTGGRDSTIRVWDIRTR------------ASVHVLSGHTNPVA  281 (460)
T ss_pred             eeEEEechhhhhHHHhccccce--eEEEeccccceeEEecCCcceEEEeeeccc------------ceEEEecCCCCcce
Confidence            9999999999999999887765  889999999999999999999999999874            33455677777777


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                      ++.+.|-                                   ...+++|+.|++|++||++.++....+..|..  .+.+
T Consensus       282 ~V~~~~~-----------------------------------dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk--svra  324 (460)
T KOG0285|consen  282 SVMCQPT-----------------------------------DPQVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRA  324 (460)
T ss_pred             eEEeecC-----------------------------------CCceEEecCCceEEEeeeccCceeEeeecccc--eeeE
Confidence            7776654                                   34478999999999999999999988887765  7889


Q ss_pred             EEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEE
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      ++.+|....+|+++.| .|+-|++..+            ..+..+.+|...|++++...                || ++
T Consensus       325 l~lhP~e~~fASas~d-nik~w~~p~g------------~f~~nlsgh~~iintl~~ns----------------D~-v~  374 (460)
T KOG0285|consen  325 LCLHPKENLFASASPD-NIKQWKLPEG------------EFLQNLSGHNAIINTLSVNS----------------DG-VL  374 (460)
T ss_pred             EecCCchhhhhccCCc-cceeccCCcc------------chhhccccccceeeeeeecc----------------Cc-eE
Confidence            9999999999999987 6999999887            67778999999999999997                55 89


Q ss_pred             EEEecCCeEEEEeCCCCCCccc
Q psy988          380 VSADFNGVIRVFLNKTKPKHSS  401 (408)
Q Consensus       380 ~s~~~dg~v~iw~~~~~~~~~~  401 (408)
                      ++|++.|.+.+||.+++.....
T Consensus       375 ~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  375 VSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             EEcCCceEEEEEecCcCccccc
Confidence            9999999999999998875443

>KOG0278|consensus

Probab=100.00  E-value=5.2e-38  Score=230.25  Aligned_cols=292  Identities=18%  Similarity=0.272  Sum_probs=241.4

Q ss_pred             eEeEEEeCCceEEEEEcC--CCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           15 CLCCFQHIDFVTAICFHP--RDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        15 ~~~~~~h~~~v~~~~~sp--~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      ++..-+|..+|..++|||  .+|-+|++++.||.-.+-+-+++..+  -++.+|.+.|.+..++.+....++++.|-+-+
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--EeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            445556999999999986  38899999999999999999999888  79999999999999999998999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEec
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      +||.-++.....+.         |..-|..++|+.|.++|++|+.+..+++||++..+ +...+.+|...  |..+.|..
T Consensus        85 vw~a~tgdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~--Ir~v~wc~  153 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG--IRTVLWCH  153 (334)
T ss_pred             hhhhhhhhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc--ceeEEEec
Confidence            99998877654433         34479999999999999999999999999998654 44556666654  77889999


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      ..+.|++...|++||+||.+++....                      ++                          ....
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~----------------------sL--------------------------~~~s  185 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQ----------------------SL--------------------------EFNS  185 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEE----------------------EE--------------------------ecCC
Confidence            89999999999999999998764321                      11                          1223


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  331 (408)
                      .|+++.++++|++|.+ ...+.|.+||..+..+++.+...   ..|.+.+++|+...+++|++|..++.||..++.    
T Consensus       186 ~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge----  257 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE----  257 (334)
T ss_pred             CCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCc---cccccccccCCCceEEecCcceEEEEEeccCCc----
Confidence            4555556666665554 45567999999999988887764   357789999999999999999999999999983    


Q ss_pred             ccccCcccccee-eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          332 SVRRDRNDFWEG-IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       332 ~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                              .+.. -++|.++|.|+.|+|                ||...|+|+.||+||+|....++..
T Consensus       258 --------Ei~~~nkgh~gpVhcVrFSP----------------dGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  258 --------EIGSYNKGHFGPVHCVRFSP----------------DGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             --------eeeecccCCCCceEEEEECC----------------CCceeeccCCCceEEEEEecCCCch
Confidence                    3344 378999999999999                9999999999999999998877644

>KOG0281|consensus

Probab=100.00  E-value=3e-38  Score=242.44  Aligned_cols=258  Identities=19%  Similarity=0.339  Sum_probs=215.0

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |++|+|||..+..+++.+. |++.|.|+.|   +.+.|++|+.|.+|++||++++++.  ..+.+|...|..+.|+.  .
T Consensus       216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~l--~tlihHceaVLhlrf~n--g  288 (499)
T KOG0281|consen  216 DNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEPL--NTLIHHCEAVLHLRFSN--G  288 (499)
T ss_pred             cCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCchh--hHHhhhcceeEEEEEeC--C
Confidence            8999999999999998875 9999999999   5679999999999999999999987  78999999999999964  5


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      ++++++.|.++.+||+......     .......+|...|+.+.|+  .+++++++.|.+|++|++.+++.++++.+|..
T Consensus       289 ~mvtcSkDrsiaVWdm~sps~i-----t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR  361 (499)
T KOG0281|consen  289 YMVTCSKDRSIAVWDMASPTDI-----TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR  361 (499)
T ss_pred             EEEEecCCceeEEEeccCchHH-----HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccc
Confidence            8999999999999999875421     1222234666789999986  66999999999999999999999999999887


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      .  +-|+.+  .++++++|+.|.+|++||+..            +.+++.+++|+.-|.++.|.                
T Consensus       362 G--IAClQY--r~rlvVSGSSDntIRlwdi~~------------G~cLRvLeGHEeLvRciRFd----------------  409 (499)
T KOG0281|consen  362 G--IACLQY--RDRLVVSGSSDNTIRLWDIEC------------GACLRVLEGHEELVRCIRFD----------------  409 (499)
T ss_pred             c--ceehhc--cCeEEEecCCCceEEEEeccc------------cHHHHHHhchHHhhhheeec----------------
Confidence            6  434443  789999999999999999965            46778899999999999985                


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE-------EeeccceeceeEEEEcCCCCEEEEec
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-------YKGYVNVSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~  313 (408)
                                           .+.+++|+.||+|++||+..+.....       .....+.+.|..+.|  |...+++++
T Consensus       410 ---------------------~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsss  466 (499)
T KOG0281|consen  410 ---------------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSS  466 (499)
T ss_pred             ---------------------CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEecc
Confidence                                 45689999999999999987654321       111223347778888  667899999


Q ss_pred             CCceEEEeeccccCc
Q psy988          314 ENQCIYIWKTHHDYA  328 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~  328 (408)
                      .|.+|.|||+..+.+
T Consensus       467 HddtILiWdFl~~~~  481 (499)
T KOG0281|consen  467 HDDTILIWDFLNGPP  481 (499)
T ss_pred             CCCeEEEEEcCCCCc
Confidence            999999999988643

>KOG1407|consensus

Probab=100.00  E-value=7.1e-36  Score=220.34  Aligned_cols=284  Identities=20%  Similarity=0.236  Sum_probs=230.9

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      +|...|.+++|+- +|..|++|+.|+++.+|+++...........+|.+.|-.++|+| +...+++++.|.+|++||++.
T Consensus        18 ~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   18 GHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            3899999999999 99999999999999999999887766567789999999999987 467899999999999999999


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .+........         +.-.-+.|+|+|.+++++..|..|.+.|.++.+.....+....   +..++|+.++..++.
T Consensus        97 ~k~~~~i~~~---------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e---~ne~~w~~~nd~Ffl  164 (313)
T KOG1407|consen   97 GKCTARIETK---------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE---VNEISWNNSNDLFFL  164 (313)
T ss_pred             CcEEEEeecc---------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce---eeeeeecCCCCEEEE
Confidence            8877665532         2445688999999999999999999999998877665544332   556889888888887


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      ....|.|.|.....            .+++..+..|.....|                                   +.|
T Consensus       165 t~GlG~v~ILsyps------------Lkpv~si~AH~snCic-----------------------------------I~f  197 (313)
T KOG1407|consen  165 TNGLGCVEILSYPS------------LKPVQSIKAHPSNCIC-----------------------------------IEF  197 (313)
T ss_pred             ecCCceEEEEeccc------------cccccccccCCcceEE-----------------------------------EEE
Confidence            77789999987632            3444555555544444                                   455


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      +|+|++||+|+.|..+.+||+...-+++.+..+.-  +|..++||.||++||+|++|..|-|=+++++            
T Consensus       198 ~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetG------------  263 (313)
T KOG1407|consen  198 DPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETG------------  263 (313)
T ss_pred             CCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccC------------
Confidence            55677789999999999999999988888888766  8889999999999999999999999999998            


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC---------CeEEEEeCC
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN---------GVIRVFLNK  394 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---------g~v~iw~~~  394 (408)
                      ..+..+ .+.++-..++|+|                ...+||-++.|         |.|++|-+.
T Consensus       264 d~~~eI-~~~~~t~tVAWHP----------------k~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  264 DRVWEI-PCEGPTFTVAWHP----------------KRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CeEEEe-eccCCceeEEecC----------------CCceeeEEecCCCCccccccceeEEecCC
Confidence            333333 3788999999999                67777766654         567777554

>KOG0266|consensus

Probab=100.00  E-value=2.3e-36  Score=261.97  Aligned_cols=268  Identities=24%  Similarity=0.387  Sum_probs=224.3

Q ss_pred             CCceEEEEeccCCe--eEeEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEe
Q psy988            1 MDKTVRLWHISRKE--CLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~--~~~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      .|+.+++|+..+.+  .++.+ +|...|.+++|+| +++++++++.|++|+|||+.. +...  +.+.+|...|++++|+
T Consensus       179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~--~~l~gH~~~v~~~~f~  255 (456)
T KOG0266|consen  179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNL--KTLKGHSTYVTSVAFS  255 (456)
T ss_pred             CCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEE--EEecCCCCceEEEEec
Confidence            47899999998777  66665 4999999999999 999999999999999999933 3444  7899999999999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc--ccee
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCK  154 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~  154 (408)
                      |+|+++++|+.|++|++||+++++....+.        .|...|.+++|+++++.|++++.|+.|++||+.++.  +...
T Consensus       256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             CCCCEEEEecCCCcEEEEeccCCeEEEeee--------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            999999999999999999999976655544        566799999999999999999999999999999998  4566


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      +..+.....+.++.|+|++++++++..|+.+++||+..+.            ....+.+|...+.               
T Consensus       328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~------------~~~~~~~~~~~~~---------------  380 (456)
T KOG0266|consen  328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK------------SVGTYTGHSNLVR---------------  380 (456)
T ss_pred             ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc------------ceeeecccCCcce---------------
Confidence            6665543357889999999999999999999999997542            2233344433221               


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec-
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-  313 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  313 (408)
                                       .+.+...++.+.++++|+.|+.|++||+.++..+..+.+|. ...+..+.++|..+++++++ 
T Consensus       381 -----------------~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  381 -----------------CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             -----------------eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCc
Confidence                             22333447788999999999999999999999999999984 44788999999999999988 


Q ss_pred             -CCceEEEeecc
Q psy988          314 -ENQCIYIWKTH  324 (408)
Q Consensus       314 -~dg~i~iw~~~  324 (408)
                       .|+.+++|..+
T Consensus       443 ~~d~~~~~w~~~  454 (456)
T KOG0266|consen  443 EGDGLIRLWKYD  454 (456)
T ss_pred             CCCceEEEecCC
Confidence             68999999754

>KOG0316|consensus

Probab=100.00  E-value=2.4e-36  Score=219.52  Aligned_cols=256  Identities=16%  Similarity=0.256  Sum_probs=220.9

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      ..+..+.++|.++.|+-+|+|.++++.|.+|++|+...+..+...        .+|+..|..++.+.|+..|++|+.|..
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY--------sghG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY--------SGHGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee--------cCCCceeeeccccccccccccCCCCce
Confidence            567889999999999999999999999999999999877665443        366779999999999999999999999


Q ss_pred             EEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      +.+||+++|+..+.+.+|...  +..+.|+.+...+++|+.|..+++||.+.          ...++++.+......|.+
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aq--VNtV~fNeesSVv~SgsfD~s~r~wDCRS----------~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQ--VNTVRFNEESSVVASGSFDSSVRLWDCRS----------RSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             EEEEEcccCeeeeecccccce--eeEEEecCcceEEEeccccceeEEEEccc----------CCCCccchhhhhcCceeE
Confidence            999999999999999998866  78999999999999999999999999976          334556666666777777


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEE
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  300 (408)
                      +..+                                     +..|++|+.||+++.||++.|++..-+-++    +|+++
T Consensus       151 i~v~-------------------------------------~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~v  189 (307)
T KOG0316|consen  151 IDVA-------------------------------------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSV  189 (307)
T ss_pred             EEec-------------------------------------ccEEEeeccCCcEEEEEeecceeehhhcCC----cceeE
Confidence            7654                                     345889999999999999999887666553    78999


Q ss_pred             EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE--EEEecCCchhhhhccCCCCCCCcccE
Q psy988          301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT--CAVFAPCPELIIAQMEPDKSESTGYV  378 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~~~~~~s~~~~~  378 (408)
                      +|++|++..++++.|+++++.|-.++            +++....+|.+.-.  ..+++.                ....
T Consensus       190 s~s~d~nc~La~~l~stlrLlDk~tG------------klL~sYkGhkn~eykldc~l~q----------------sdth  241 (307)
T KOG0316|consen  190 SFSKDGNCSLASSLDSTLRLLDKETG------------KLLKSYKGHKNMEYKLDCCLNQ----------------SDTH  241 (307)
T ss_pred             EecCCCCEEEEeeccceeeecccchh------------HHHHHhcccccceeeeeeeecc----------------ccee
Confidence            99999999999999999999999998            78899999986543  445666                6679


Q ss_pred             EEEEecCCeEEEEeCCCCCCccccccc
Q psy988          379 LVSADFNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       379 l~s~~~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                      +++|++||.|++||+........+++.
T Consensus       242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~  268 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDETQISKLSVV  268 (307)
T ss_pred             EEeccCCceEEEEEeccceeeeeeccC
Confidence            999999999999999998887777653

>KOG0313|consensus

Probab=100.00  E-value=5.3e-36  Score=232.33  Aligned_cols=293  Identities=20%  Similarity=0.295  Sum_probs=231.9

Q ss_pred             CCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC---CEEEEEecC
Q psy988           12 RKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG---KFAVVGSYD   88 (408)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d   88 (408)
                      ..+++..+.|.+.|.++...   ++.+++|+.||.+++||..... .  ..+.+|.++|.+++|....   ..|++++.|
T Consensus        95 aP~pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~-~--~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D  168 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKS-I--KTIVGHTGPIKSVAWVIKNSSSCLFVSASMD  168 (423)
T ss_pred             CCCccccccchhhhhhhccc---CceEEEeecCCeeEEEecCCce-E--EEEecCCcceeeeEEEecCCccceEEEecCC
Confidence            45566677799999999886   4689999999999999986543 3  5889999999998886433   359999999


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC--------------------
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--------------------  148 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------------  148 (408)
                      .++++|..+.++.....    .....+|...|.++...+++..+++|+.|..|.+|+..+                    
T Consensus       169 qtl~Lw~~~~~~~~~~~----~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~  244 (423)
T KOG0313|consen  169 QTLRLWKWNVGENKVKA----LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE  244 (423)
T ss_pred             ceEEEEEecCchhhhhH----HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence            99999998876543222    222237888999999999999999999999999999321                    


Q ss_pred             -----cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          149 -----LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       149 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                           ..++..+.+|...  |.++.|++ ...+++++.|.+|+.||+.++.....            +            
T Consensus       245 ~~~~~r~P~vtl~GHt~~--Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~------------~------------  297 (423)
T KOG0313|consen  245 KEGGTRTPLVTLEGHTEP--VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST------------L------------  297 (423)
T ss_pred             hcccccCceEEecccccc--eeeEEEcC-CCceEeecccceEEEEEeecccceee------------e------------
Confidence                 1223345565554  77888988 66899999999999999987543321            0            


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---eeeEEeeccceeceeEE
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN---LSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~  300 (408)
                                              .....+.++.++|..++|++|+.|..|++||.+++.   ...++.+|.+  .|.++
T Consensus       298 ------------------------~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n--wVssv  351 (423)
T KOG0313|consen  298 ------------------------TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN--WVSSV  351 (423)
T ss_pred             ------------------------ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh--hhhhe
Confidence                                    123345666777777889999999999999998764   4556778776  88999


Q ss_pred             EEcCCCC-EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEE
Q psy988          301 SFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       301 ~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      .|+|... +|++|+.|+++++||+++..           .++..+.+|...|.++.|+                 ++.+|
T Consensus       352 kwsp~~~~~~~S~S~D~t~klWDvRS~k-----------~plydI~~h~DKvl~vdW~-----------------~~~~I  403 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNTVKLWDVRSTK-----------APLYDIAGHNDKVLSVDWN-----------------EGGLI  403 (423)
T ss_pred             ecCCCCceEEEEEecCCeEEEEEeccCC-----------CcceeeccCCceEEEEecc-----------------CCceE
Confidence            9999554 67899999999999999862           3678899999999999998                 57899


Q ss_pred             EEEecCCeEEEEeCCC
Q psy988          380 VSADFNGVIRVFLNKT  395 (408)
Q Consensus       380 ~s~~~dg~v~iw~~~~  395 (408)
                      ++||.|.+|+|+.-..
T Consensus       404 vSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  404 VSGGADNKLRIFKGSP  419 (423)
T ss_pred             EeccCcceEEEecccc
Confidence            9999999999987543

>KOG1446|consensus

Probab=100.00  E-value=1.5e-34  Score=219.43  Aligned_cols=296  Identities=20%  Similarity=0.313  Sum_probs=235.4

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec--CCEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY--DGRC   91 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i   91 (408)
                      +.+.+. -.+.|+++.|++ +|.+|++++.|.+++|||..+++..  +.+..+.-.+..++|......++.++.  |.+|
T Consensus         6 ~ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~--~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQV--KTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCcee--eEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            334444 578899999999 9999999999999999999999877  677777778899999877777777776  8899


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      +..++.+.+.+..+        .+|...|..++.+|-++.+++++.|++|++||++..++...+.....    ..++|+|
T Consensus        83 ryLsl~dNkylRYF--------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp  150 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYF--------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDP  150 (311)
T ss_pred             EEEEeecCceEEEc--------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECC
Confidence            99999987765443        36778999999999999999999999999999998777666554332    2478999


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      +|-++|++.....|++||++.-.                    .++......                      ......
T Consensus       151 ~GLifA~~~~~~~IkLyD~Rs~d--------------------kgPF~tf~i----------------------~~~~~~  188 (311)
T KOG1446|consen  151 EGLIFALANGSELIKLYDLRSFD--------------------KGPFTTFSI----------------------TDNDEA  188 (311)
T ss_pred             CCcEEEEecCCCeEEEEEecccC--------------------CCCceeEcc----------------------CCCCcc
Confidence            99999999888899999997521                    011111100                      012344


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceec-eeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS-QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                      ..+.+.|+|||++++.++..+.+++.|.-+|.....+..+..... ....+|+||++++++|+.||+|.+|+++++    
T Consensus       189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg----  264 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG----  264 (311)
T ss_pred             ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC----
Confidence            667788888899999999999999999999999999988765432 257899999999999999999999999987    


Q ss_pred             cccccCccccceeeee-eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          331 SSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                              ..+..+.+ +.+++.++.|+|                .--+++|+  +..+-+|-....+
T Consensus       265 --------~~v~~~~~~~~~~~~~~~fnP----------------~~~mf~sa--~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  265 --------KKVAVLRGPNGGPVSCVRFNP----------------RYAMFVSA--SSNLVFWLPDEDA  306 (311)
T ss_pred             --------cEeeEecCCCCCCccccccCC----------------ceeeeeec--CceEEEEeccccc
Confidence                    56666776 789999999999                44455555  5678888766443

>KOG0275|consensus

Probab=100.00  E-value=1.4e-37  Score=236.97  Aligned_cols=288  Identities=18%  Similarity=0.328  Sum_probs=240.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee------eeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW------NEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      +.+..+.|..||| |++||++|+.||.|.+|+..+|+...-      ..+.-+..+|.|+.|+.|...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            4667789999999 999999999999999999999876521      123346789999999999999999999999999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      |.++++.+...+.       .+|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+.+|...  +....|.++|
T Consensus       290 Wri~tG~ClRrFd-------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy--vn~a~ft~dG  360 (508)
T KOG0275|consen  290 WRIETGQCLRRFD-------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY--VNEATFTDDG  360 (508)
T ss_pred             EEEecchHHHHhh-------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc--ccceEEcCCC
Confidence            9999988755443       356779999999999999999999999999999999999999998755  7789999999


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCcccccccc--ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      .++++++.||+|++|+..+.            .++.+++.  ...+|.++..-|.                         
T Consensus       361 ~~iisaSsDgtvkvW~~Ktt------------eC~~Tfk~~~~d~~vnsv~~~PK-------------------------  403 (508)
T KOG0275|consen  361 HHIISASSDGTVKVWHGKTT------------ECLSTFKPLGTDYPVNSVILLPK-------------------------  403 (508)
T ss_pred             CeEEEecCCccEEEecCcch------------hhhhhccCCCCcccceeEEEcCC-------------------------
Confidence            99999999999999998764            23333332  2334444444443                         


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee-ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                               +...++++...+++.|.++. |+.++.+.. ....+...+++.||.|.++.+.++|+.++.|.+.++    
T Consensus       404 ---------npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG----  469 (508)
T KOG0275|consen  404 ---------NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG----  469 (508)
T ss_pred             ---------CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC----
Confidence                     23457888899999999987 677777753 334456678899999999999999999999999988    


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                              ++...+.-|+..|-.++-+|                ..++||+-+.||.+++|.
T Consensus       470 --------~LE~tl~VhEkdvIGl~HHP----------------HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  470 --------KLERTLPVHEKDVIGLTHHP----------------HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             --------ceeeeeecccccccccccCc----------------ccchhhhhcccchhhhcC
Confidence                    67778888999999999999                889999999999999996

>KOG0296|consensus

Probab=100.00  E-value=2.4e-35  Score=227.59  Aligned_cols=304  Identities=15%  Similarity=0.182  Sum_probs=241.3

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |..-.||++.+++....+. |++.|+++.|+. +|.+||||+.+|.|+||+..++...  ..+...-..+.-+.|+|.+.
T Consensus        85 DD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~--~~~~~e~~dieWl~WHp~a~  161 (399)
T KOG0296|consen   85 DDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQ--WKLDQEVEDIEWLKWHPRAH  161 (399)
T ss_pred             CceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceE--EEeecccCceEEEEeccccc
Confidence            5567899999999888776 999999999999 9999999999999999999998876  45655667799999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      .|++|+.||.+.+|.+.+....+.+        .+|..++++-.|.|+|++++++..||+|++|++.+++++..+....+
T Consensus       162 illAG~~DGsvWmw~ip~~~~~kv~--------~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~  233 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQALCKVM--------SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG  233 (399)
T ss_pred             EEEeecCCCcEEEEECCCcceeeEe--------cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence            9999999999999999886332222        24678999999999999999999999999999999999888775443


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc---ceeeeecCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP---ELIIAQMEPD  237 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~  237 (408)
                       ....++.++..+..++.|..++.+++-+..+++.......    ........+...+.++.+.|..   ...+.+.-..
T Consensus       234 -~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~----~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG  308 (399)
T KOG0296|consen  234 -LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG----TVPELKPSQEELDESVESIPSSSKLPLAACGSVDG  308 (399)
T ss_pred             -CcCCccccccccceeEeccCCccEEEEccccceEEEecCC----CCccccccchhhhhhhhhcccccccchhhcccccc
Confidence             3355688888999999999999999888776655433221    1111222344444455544432   2222222111


Q ss_pred             C------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          238 K------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       238 ~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                      .      .....+..-.|...|..+.|.+ ..+|++++.+|.|+.||.++|+++..+.+|..  .|.+++++|+.+++++
T Consensus       309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~--~Il~f~ls~~~~~vvT  385 (399)
T KOG0296|consen  309 TIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM--GILDFALSPQKRLVVT  385 (399)
T ss_pred             eEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch--heeEEEEcCCCcEEEE
Confidence            1      2233334456778899999999 88999999999999999999999999999877  8899999999999999


Q ss_pred             ecCCceEEEeecc
Q psy988          312 GSENQCIYIWKTH  324 (408)
Q Consensus       312 ~~~dg~i~iw~~~  324 (408)
                      ++.|++.+||+..
T Consensus       386 ~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  386 VSDDNTALVFEVP  398 (399)
T ss_pred             ecCCCeEEEEecC
Confidence            9999999999864

>KOG0276|consensus

Probab=100.00  E-value=1.5e-35  Score=244.28  Aligned_cols=259  Identities=14%  Similarity=0.224  Sum_probs=222.7

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ..|.|.|||.++...++.+. ..-+|++..|-+ ..+++++|+.|..|+||+..+++..  +.+..|...|++++.+|..
T Consensus        33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV--~~FeAH~DyIR~iavHPt~  109 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV--KTFEAHSDYIRSIAVHPTL  109 (794)
T ss_pred             ecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceee--EEeeccccceeeeeecCCC
Confidence            36899999999999999999 889999999999 9999999999999999999999877  7999999999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      .+++++|.|-+|++||.+..-...       ....+|...|.+++|+| |.+.+++++-|++|++|.+....+..++.+|
T Consensus       110 P~vLtsSDDm~iKlW~we~~wa~~-------qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH  182 (794)
T KOG0276|consen  110 PYVLTSSDDMTIKLWDWENEWACE-------QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH  182 (794)
T ss_pred             CeEEecCCccEEEEeeccCceeee-------eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc
Confidence            999999999999999998653221       12345667999999999 5678999999999999999999999999988


Q ss_pred             cccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988          159 VNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  236 (408)
Q Consensus       159 ~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  236 (408)
                      ...  +.++.|-+.  ..+|++|+.|..+++||.++            ..+++++.+|...|..+.|+|.-         
T Consensus       183 ekG--VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------------k~CV~TLeGHt~Nvs~v~fhp~l---------  239 (794)
T KOG0276|consen  183 EKG--VNCVDYYTGGDKPYLISGADDLTIKVWDYQT------------KSCVQTLEGHTNNVSFVFFHPEL---------  239 (794)
T ss_pred             ccC--cceEEeccCCCcceEEecCCCceEEEeecch------------HHHHHHhhcccccceEEEecCCC---------
Confidence            766  778888774  46899999999999999976            46678888888888887777754         


Q ss_pred             CCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          237 DKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                                                ..+++|++||+++||+..+.++..++.-.  ...+.+++-.+.++.++.|..+|
T Consensus       240 --------------------------piiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  240 --------------------------PIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             --------------------------cEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCC
Confidence                                      45789999999999999998887777653  33788899889888899988777


Q ss_pred             eEEE
Q psy988          317 CIYI  320 (408)
Q Consensus       317 ~i~i  320 (408)
                      .|.+
T Consensus       292 ~i~v  295 (794)
T KOG0276|consen  292 SVTV  295 (794)
T ss_pred             cEEE
Confidence            6543

>KOG0283|consensus

Probab=100.00  E-value=1e-35  Score=253.78  Aligned_cols=252  Identities=31%  Similarity=0.459  Sum_probs=200.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC--------------------------------CC------------
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD--------------------------------KK------------   56 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~--------------------------------~~------------   56 (408)
                      |.+.|++|.||+ ||+|||+||.||.|+||.+..                                ..            
T Consensus       266 h~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  266 HKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             cCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            999999999999 999999999999999999754                                00            


Q ss_pred             --------------ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           57 --------------VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        57 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                                    ..++..+.+|.+.|..+.|+.+ ++|++++.|.+|++|++...+....+.         |...|+|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~---------HndfVTc  414 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS---------HNDFVTC  414 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe---------cCCeeEE
Confidence                          0123456789999999999976 579999999999999999877655543         6679999


Q ss_pred             EeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecc
Q psy988          123 IEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       123 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (408)
                      ++|+| |.++|++|+-||.|+||++...+...-...+   ..|++++|.|||++.++|+.+|.+++|+....+....   
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~---  488 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD---  488 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe---
Confidence            99999 7889999999999999999877665444333   3488999999999999999999999999865332211   


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcC
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLR  280 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~  280 (408)
                                         ..++-.+..                 ......|+++.|.|.. ..+++.+.|..|||||.+
T Consensus       489 -------------------~~I~~~~~K-----------------k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  489 -------------------FHIRLHNKK-----------------KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             -------------------eeEeeccCc-----------------cccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence                               011000000                 0112266777766543 347777999999999999


Q ss_pred             CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          281 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      +.+++..|++..+...-....|+.||++|+++++|..|++|+...
T Consensus       533 ~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  533 DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            999999999888777777889999999999999999999999743

>KOG0282|consensus

Probab=100.00  E-value=2.8e-37  Score=246.68  Aligned_cols=265  Identities=19%  Similarity=0.292  Sum_probs=218.2

Q ss_pred             CCceEEEEeccC-CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            1 MDKTVRLWHISR-KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         1 ~Dg~i~vwd~~~-~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ||+.|+|||+-. +++++++. |..+|.+++|++ +|..++++|.|+.|++||+++|++..  .+. ....++++.|+|+
T Consensus       235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~--~f~-~~~~~~cvkf~pd  310 (503)
T KOG0282|consen  235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLS--RFH-LDKVPTCVKFHPD  310 (503)
T ss_pred             CCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEEE--EEe-cCCCceeeecCCC
Confidence            799999999976 88999887 999999999999 99999999999999999999999873  332 3456899999999


Q ss_pred             C-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           79 G-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        79 ~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      + +.+++|+.|+.|+.||+++++..+..        ..|-+.|..+.|-++++++++++.|+.+++|+.+....+.....
T Consensus       311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeY--------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~  382 (503)
T KOG0282|consen  311 NQNIFLVGGSDKKIRQWDIRSGKVVQEY--------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD  382 (503)
T ss_pred             CCcEEEEecCCCcEEEEeccchHHHHHH--------HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc
Confidence            8 88999999999999999998754332        24557899999999999999999999999999988776554433


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      . ......++..+|+++++++-+.|..|.+|.+....         ....-+.+.+|...                    
T Consensus       383 ~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~---------r~nkkK~feGh~va--------------------  432 (503)
T KOG0282|consen  383 P-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF---------RLNKKKRFEGHSVA--------------------  432 (503)
T ss_pred             h-hhccCcceecCCCCCeehhhccCceEEEEeccccc---------ccCHhhhhcceecc--------------------
Confidence            2 22345678999999999999999999999875321         11222334444322                    


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC-CCEEEEecCCc
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-GKYIVSGSENQ  316 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg  316 (408)
                                   +.-..+.|||||++|++|..||.+.+||.++-+++..++.|..  .++.+.|+|. ...+|+++.||
T Consensus       433 -------------Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  433 -------------GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             -------------CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcceeEecccCc
Confidence                         2334577888899999999999999999999999999999855  8889999995 45799999999


Q ss_pred             eEEEee
Q psy988          317 CIYIWK  322 (408)
Q Consensus       317 ~i~iw~  322 (408)
                      .|++|+
T Consensus       498 ~Ikiwd  503 (503)
T KOG0282|consen  498 LIKIWD  503 (503)
T ss_pred             eeEecC
Confidence            999996

>KOG0292|consensus

Probab=100.00  E-value=8.5e-35  Score=249.06  Aligned_cols=264  Identities=19%  Similarity=0.301  Sum_probs=217.3

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      |.|.|++||..-+.++..+. |.++|..++|+| .+.++++|+.|-.|++|+.++.++.  .++.+|-..|..+.|++.-
T Consensus        29 HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl--ftL~GHlDYVRt~~FHhey  105 (1202)
T KOG0292|consen   29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL--FTLLGHLDYVRTVFFHHEY  105 (1202)
T ss_pred             cCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh--hhhccccceeEEeeccCCC
Confidence            57999999999999999987 999999999999 9999999999999999999999887  7999999999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc--------
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--------  151 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------  151 (408)
                      .+++++|.|.+|+||+..+.+.+....        +|...|.|..|+|....+++++-|.+||+||+...+.        
T Consensus       106 PWIlSASDDQTIrIWNwqsr~~iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~  177 (1202)
T KOG0292|consen  106 PWILSASDDQTIRIWNWQSRKCIAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSL  177 (1202)
T ss_pred             ceEEEccCCCeEEEEeccCCceEEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCc
Confidence            999999999999999999988765543        5667999999999999999999999999999853111        


Q ss_pred             ---------------------ceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988          152 ---------------------SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       152 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                                           ...+.+|...  +.-++|+|.-..|++|+.|..|++|.+...+          .-.+.+
T Consensus       178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG--VNwaAfhpTlpliVSG~DDRqVKlWrmnetK----------aWEvDt  245 (1202)
T KOG0292|consen  178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG--VNWAAFHPTLPLIVSGADDRQVKLWRMNETK----------AWEVDT  245 (1202)
T ss_pred             hhhhhccccchhhcCCcCeeeeeeecccccc--cceEEecCCcceEEecCCcceeeEEEecccc----------ceeehh
Confidence                                 1123444433  6778999999999999999999999986421          112234


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      ..+|...|.++-|+                                   |....+++.++|++|+|||+...+.++++..
T Consensus       246 crgH~nnVssvlfh-----------------------------------p~q~lIlSnsEDksirVwDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  246 CRGHYNNVSSVLFH-----------------------------------PHQDLILSNSEDKSIRVWDMTKRTSVQTFRR  290 (1202)
T ss_pred             hhcccCCcceEEec-----------------------------------CccceeEecCCCccEEEEecccccceeeeec
Confidence            45555555555555                                   4556678899999999999999999999976


Q ss_pred             ccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      ...  ....++-+|..+++|+|. |+-+.+|.++.
T Consensus       291 end--RFW~laahP~lNLfAAgH-DsGm~VFkleR  322 (1202)
T KOG0292|consen  291 END--RFWILAAHPELNLFAAGH-DSGMIVFKLER  322 (1202)
T ss_pred             cCC--eEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence            555  556789999999988875 55566777664

>KOG0277|consensus

Probab=100.00  E-value=3.7e-35  Score=215.74  Aligned_cols=285  Identities=18%  Similarity=0.240  Sum_probs=219.3

Q ss_pred             EEEEEcCCCCCEEEEEe-------CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC-CCEEEEEecCCEEEEEecc
Q psy988           26 TAICFHPRDDRYFLSGS-------LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-GKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~   97 (408)
                      .++.|||--.++||.+.       ..|++.|.++...+-+....-..-...+..++|+++ .+.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            67899996566666553       258999999964433321222234567999999986 5678999999999999954


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec-CCCE
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKY  175 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  175 (408)
                      ...       .+......|...|.++.|++. +..+++++.|++|++|+....+.+.++.+|...  |....|+| .++.
T Consensus        92 ~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~--Iy~a~~sp~~~nl  162 (311)
T KOG0277|consen   92 MPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC--IYQAAFSPHIPNL  162 (311)
T ss_pred             CCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE--EEEEecCCCCCCe
Confidence            332       233334567789999999984 556778899999999999999999999997655  77899999 5788


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      +++++.|+.+++||++...           +.+. +..|...+.+..|+.-.                            
T Consensus       163 fas~Sgd~~l~lwdvr~~g-----------k~~~-i~ah~~Eil~cdw~ky~----------------------------  202 (311)
T KOG0277|consen  163 FASASGDGTLRLWDVRSPG-----------KFMS-IEAHNSEILCCDWSKYN----------------------------  202 (311)
T ss_pred             EEEccCCceEEEEEecCCC-----------ceeE-EEeccceeEeecccccC----------------------------
Confidence            9999999999999987531           1112 45555566666665543                            


Q ss_pred             eccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEEEcCC-CCEEEEecCCceEEEeeccccCcccccc
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                            ...+++|+.|+.|+.||+++.+ ++..+.+|.-  .|..+.|||. ...||+++.|-+++|||...+.      
T Consensus       203 ------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~--AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------  268 (311)
T KOG0277|consen  203 ------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL--AVRKVKFSPHHASLLASASYDMTVRIWDPERQD------  268 (311)
T ss_pred             ------CcEEEecCCCceEEEEehhhccccceeecCCce--EEEEEecCcchhhHhhhccccceEEecccccch------
Confidence                  3457899999999999999865 4555656544  8899999995 4588999999999999987542      


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                           ..+.+...|+.-|..+.|++-               ++.++|+++.|+.++||+.
T Consensus       269 -----s~~e~~~~HtEFv~g~Dws~~---------------~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 -----SAIETVDHHTEFVCGLDWSLF---------------DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----hhhhhhhccceEEeccccccc---------------cCceeeecccccceeeecc
Confidence                 455666779999999999985               7889999999999999985

>KOG0640|consensus

Probab=100.00  E-value=2.8e-35  Score=222.73  Aligned_cols=299  Identities=16%  Similarity=0.271  Sum_probs=233.0

Q ss_pred             eEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC------------C----CceeeeeecCCceeeEEEEEecCCC
Q psy988           17 CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD------------K----KVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus        17 ~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~------------~----~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ....|+.++.+.+|+| ||.++|||+.|-.|+|.|++.            +    .-..++++..|...|+++.|+|...
T Consensus       107 ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            3345999999999999 999999999999999999862            1    1123467889999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee-cCcc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYV  159 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~  159 (408)
                      .|++++.|++|++||.........+...      ....+|.++.|+|.|.+|++|..-..+++||+++-++...- ....
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q  259 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVF------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ  259 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHh------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence            9999999999999998764432221111      12248999999999999999999999999999987765432 2333


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      +...+.++.+++.++..++++.||.|++||--.+            .++.++...                         
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~------------rCv~t~~~A-------------------------  302 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN------------RCVRTIGNA-------------------------  302 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccH------------HHHHHHHhh-------------------------
Confidence            4456889999999999999999999999996432            233333211                         


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc---eeceeEEEEcCCCCEEEEecC-C
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN---VSSQIKASFSHDGKYIVSGSE-N  315 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~-d  315 (408)
                              -.+..|.+..|..+++++++.+.|..+++|.+.+++++..+.+...   ...-+...|.....|++.-.+ .
T Consensus       303 --------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas  374 (430)
T KOG0640|consen  303 --------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS  374 (430)
T ss_pred             --------cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc
Confidence                    1234566777788888899999999999999999999999887521   122345678888888877654 4


Q ss_pred             ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      +.+.-||.++...           ....-.+|++.+..+.-||                .+.-+++|+.|..+|+|--+
T Consensus       375 ~slcsWdaRtadr-----------~~l~slgHn~a~R~i~HSP----------------~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  375 NSLCSWDARTADR-----------VALLSLGHNGAVRWIVHSP----------------VEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             Cceeeccccchhh-----------hhhcccCCCCCceEEEeCC----------------CCCceeeecccceeeeeeec
Confidence            6899999988621           1222347999999999999                88999999999999999644

>KOG0313|consensus

Probab=100.00  E-value=4.5e-35  Score=227.21  Aligned_cols=274  Identities=20%  Similarity=0.299  Sum_probs=217.8

Q ss_pred             CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCC--CCEEEEEeCCCcEEEEecCCCCceee--eeecCCceeeEEEEEe
Q psy988            1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRD--DRYFLSGSLDGKLRLWNIPDKKVAVW--NEVEGQTKLITAANFC   76 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~--~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~   76 (408)
                      .||.++|||.+........+|.++|.+++|.-.+  ...+++++.|.++++|.++.+.....  ....+|...|.+++..
T Consensus       123 YDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~  202 (423)
T KOG0313|consen  123 YDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD  202 (423)
T ss_pred             cCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence            4899999998755555555699999988886412  23599999999999999987764332  3345999999999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeE--EE---------------EEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHT--QI---------------HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      ++|..+++|+.|.+|.||+........  ..               .........+|..+|.++.|++ ...+++++.|.
T Consensus       203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH  281 (423)
T KOG0313|consen  203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH  281 (423)
T ss_pred             CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc
Confidence            999999999999999999933211100  00               0011122357888999999998 77899999999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +|+.||+.++.....+.+..   ..+++.++|..+.|++|+.|..+++||.+++...         .....+.+|+..|.
T Consensus       282 TIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs---------~v~~s~~gH~nwVs  349 (423)
T KOG0313|consen  282 TIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS---------VVSQSLIGHKNWVS  349 (423)
T ss_pred             eEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCCCCCCCc---------eeEEeeecchhhhh
Confidence            99999999999887776543   3778999999999999999999999999876332         23356778888888


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceecee
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQI  298 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~  298 (408)
                      ++.|+|...+.                                  |++++.|+++++||+++.+ ++..+.+|..  .|.
T Consensus       350 svkwsp~~~~~----------------------------------~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl  393 (423)
T KOG0313|consen  350 SVKWSPTNEFQ----------------------------------LVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVL  393 (423)
T ss_pred             heecCCCCceE----------------------------------EEEEecCCeEEEEEeccCCCcceeeccCCc--eEE
Confidence            88888876665                                  7889999999999999887 8888888755  888


Q ss_pred             EEEEcCCCCEEEEecCCceEEEeecc
Q psy988          299 KASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       299 ~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      ++.|.. +.+|++|+.|.+|+|+.-.
T Consensus       394 ~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  394 SVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEeccC-CceEEeccCcceEEEeccc
Confidence            999974 6799999999999999754

>KOG0288|consensus

Probab=100.00  E-value=2.8e-36  Score=236.35  Aligned_cols=282  Identities=20%  Similarity=0.336  Sum_probs=229.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |.+.|..+.|-+ +...|++|+.|..|++|++...+......+.+..++|+++.|.++++++++++.|+.+++|++...+
T Consensus       174 h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r  252 (459)
T KOG0288|consen  174 HEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR  252 (459)
T ss_pred             cccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence            999999999999 8789999999999999999988866667889999999999999999999999999999999998865


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ....        ..+|...|+++.|......+++|+.|.+|++||+....+.+++...   ..+..++.+  +..+++|-
T Consensus       253 ~~~T--------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~---S~cnDI~~~--~~~~~SgH  319 (459)
T KOG0288|consen  253 LRHT--------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG---SQCNDIVCS--ISDVISGH  319 (459)
T ss_pred             hhhh--------hcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc---ccccceEec--ceeeeecc
Confidence            4333        3457789999999987777999999999999999987776654432   224445544  55688999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .|+.|++||.+.......            .                                    ...+.|+++..++
T Consensus       320 ~DkkvRfwD~Rs~~~~~s------------v------------------------------------~~gg~vtSl~ls~  351 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRS------------V------------------------------------PLGGRVTSLDLSM  351 (459)
T ss_pred             cccceEEEeccCCceeeE------------e------------------------------------ecCcceeeEeecc
Confidence            999999999876432211            1                                    1223566666666


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeec--cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      ++..+++++.|.++.+.|+++.+....+...  ......+.+.|||++.|+|+|+.||.|+||++.++            
T Consensus       352 ~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg------------  419 (459)
T KOG0288|consen  352 DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG------------  419 (459)
T ss_pred             CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc------------
Confidence            7777888899999999999998888777643  22345778999999999999999999999999987            


Q ss_pred             ccceeeeeecc--ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          339 DFWEGIKAHNA--VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       339 ~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      ++...+.....  .|++++|+|                .|..|++++.++.+.+|.
T Consensus       420 KlE~~l~~s~s~~aI~s~~W~~----------------sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  420 KLEKVLSLSTSNAAITSLSWNP----------------SGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eEEEEeccCCCCcceEEEEEcC----------------CCchhhcccCCcceEecC
Confidence            44444443333  599999999                899999999999999994

>KOG1408|consensus

Probab=100.00  E-value=3.2e-34  Score=240.28  Aligned_cols=352  Identities=16%  Similarity=0.210  Sum_probs=271.5

Q ss_pred             CceEEEEeccCCeeEeEEE--eC-----------------------CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ--HI-----------------------DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK   56 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--h~-----------------------~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~   56 (408)
                      ||.|++++..+.....++.  |.                       -...++.|+| ..+.|...-.|..++|||+++-.
T Consensus       279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYvWDvrD~~  357 (1080)
T KOG1408|consen  279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYVWDVRDVN  357 (1080)
T ss_pred             cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEEEeccccc
Confidence            7899999987765544432  11                       1235678998 77789999999999999998733


Q ss_pred             -ceeeeeecCCceeeEEEEEecC-----------CCEEEEEecCCEEEEEeccCCeeeEEEEEee---------------
Q psy988           57 -VAVWNEVEGQTKLITAANFCEN-----------GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS---------------  109 (408)
Q Consensus        57 -~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------  109 (408)
                       .-....+..|...|+.+.--|.           ...+.+++.|++|++|+++............               
T Consensus       358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~  437 (1080)
T KOG1408|consen  358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ  437 (1080)
T ss_pred             cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence             2222455668888887776551           1248899999999999998632111100000               


Q ss_pred             --------------ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec---C
Q psy988          110 --------------TRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH---D  172 (408)
Q Consensus       110 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~  172 (408)
                                    ....-.....+.+++.+|++++|++|..-|.+++|++...+....+..|...  +.++.|+.   .
T Consensus       438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE--ilcLeyS~p~~~  515 (1080)
T KOG1408|consen  438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE--ILCLEYSFPVLT  515 (1080)
T ss_pred             hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce--eEEEeecCchhh
Confidence                          0000112346899999999999999999999999999988887777777655  88888875   3


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc--ceeeeecCCCC-------CCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP--ELIIAQMEPDK-------SESTG  243 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~-------~~~~~  243 (408)
                      .+.|++++.|..|.+||....           ..+++++.+|...|+++.|...|  ..++..+.+..       .....
T Consensus       516 ~kLLASasrdRlIHV~Dv~rn-----------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g  584 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKRN-----------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG  584 (1080)
T ss_pred             hHhhhhccCCceEEEEecccc-----------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc
Confidence            478999999999999998643           34567889999999999999877  44444332211       11112


Q ss_pred             eeecC-----CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-eeceeEEEEcCCCCEEEEecCCce
Q psy988          244 YVLNA-----TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       244 ~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                      .++..     ....+..++..|..+++++++.|..|+|||+.+++..+.|++... .+....+...|.|.|||+...|.+
T Consensus       585 ~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  585 RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence            22222     235688999999999999999999999999999999999987543 367889999999999999999999


Q ss_pred             EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      +.++|+.++            +++..+.||...|+.+.|.+                |-+.|++.+.||+|.||.+..
T Consensus       665 l~~~Df~sg------------EcvA~m~GHsE~VTG~kF~n----------------DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  665 LCFVDFVSG------------ECVAQMTGHSEAVTGVKFLN----------------DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eEEEEeccc------------hhhhhhcCcchheeeeeecc----------------cchhheeecCCceEEEEECch
Confidence            999999998            89999999999999999999                899999999999999999875

>KOG0772|consensus

Probab=100.00  E-value=5.2e-35  Score=235.73  Aligned_cols=302  Identities=18%  Similarity=0.279  Sum_probs=228.2

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee--eeee-cCCceeeEEEEEecCCCEEEEEecCCEEEEEec
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV--WNEV-EGQTKLITAANFCENGKFAVVGSYDGRCIFYTT   96 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~   96 (408)
                      +|+..|.++++.| .|..|++|+.|.+|++||+.......  ++.+ ......|.+++|++.|..|++.+.....+++|-
T Consensus       165 hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR  243 (641)
T KOG0772|consen  165 HGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR  243 (641)
T ss_pred             CCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence            4889999999999 99999999999999999998754221  1222 233457999999999999999999999999998


Q ss_pred             cCCeeeEEEE----EeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCccc-ceee---cCccccccceEE
Q psy988           97 DQLKYHTQIH----VRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNL-SCKY---KGYVNVSSQIKA  167 (408)
Q Consensus        97 ~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~---~~~~~~~~~~~~  167 (408)
                      +.........    +.......+|...++|.+|+|.. ..+++++.||++++||+...+. ...+   ........+..+
T Consensus       244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC  323 (641)
T KOG0772|consen  244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC  323 (641)
T ss_pred             CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence            7765433221    23334456788899999999965 4788999999999999976442 2222   222344667889


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      +|+++|+.||+|+.||.|.+|+.......                                            ....+-.
T Consensus       324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~--------------------------------------------p~~~vk~  359 (641)
T KOG0772|consen  324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVR--------------------------------------------PVMKVKD  359 (641)
T ss_pred             ecCCCcchhhhcccCCceeeeecCCcccc--------------------------------------------cceEeee
Confidence            99999999999999999999997432110                                            0001112


Q ss_pred             CCC--ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEEEcCCCCEEEEecC------CceE
Q psy988          248 ATG--RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGSE------NQCI  318 (408)
Q Consensus       248 ~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i  318 (408)
                      .|.  ..|+++.||+||++|++-+.|+++++||++..+ ++....+......-+.++|||+.++|++|..      .|.+
T Consensus       360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L  439 (641)
T KOG0772|consen  360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTL  439 (641)
T ss_pred             ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceE
Confidence            333  378888888888889999999999999999754 5555555555556678999999999999753      5789


Q ss_pred             EEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          319 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      .+||..+-            ..+..+.-....|..+.|+|                .-+.|..|+.||++++|=-+
T Consensus       440 ~f~d~~t~------------d~v~ki~i~~aSvv~~~Whp----------------kLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  440 FFFDRMTL------------DTVYKIDISTASVVRCLWHP----------------KLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             EEEeccce------------eeEEEecCCCceEEEEeecc----------------hhhheeeecCCCceEEEECc
Confidence            99998775            45555665678899999999                77788888889999987433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-33  Score=233.31  Aligned_cols=259  Identities=24%  Similarity=0.416  Sum_probs=213.9

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ||.|++|++.+++....+. |...+..+.|+| ++++|++++.||.|++|++.+++..  ..+..|...+.++.|+++++
T Consensus        30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~  106 (289)
T cd00200          30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECV--RTLTGHTSYVSSVAFSPDGR  106 (289)
T ss_pred             CcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccce--EEEeccCCcEEEEEEcCCCC
Confidence            7899999999888777776 999999999999 8889999999999999999987655  56778888999999999998


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      ++++++.+|.+.+|++.+.+......        .|...+.++.|+|++.++++++.++.|++||+++++....+..+..
T Consensus       107 ~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~  178 (289)
T cd00200         107 ILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG  178 (289)
T ss_pred             EEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc
Confidence            88888889999999998765543332        3456899999999988888888799999999998888777775543


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                        .+.++.|+|+++.+++++.++.+++||++.+.            ....+..+...                       
T Consensus       179 --~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------------~~~~~~~~~~~-----------------------  221 (289)
T cd00200         179 --EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK------------CLGTLRGHENG-----------------------  221 (289)
T ss_pred             --ccceEEECCCcCEEEEecCCCcEEEEECCCCc------------eecchhhcCCc-----------------------
Confidence              47789999999999999999999999986422            12222233334                       


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI  320 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  320 (408)
                                  +.++.|+|++.++++++.++.|++||+.+++....+..+..  .+.+++|+|++++|++++.||.|++
T Consensus       222 ------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~i  287 (289)
T cd00200         222 ------------VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRI  287 (289)
T ss_pred             ------------eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCCCeEEe
Confidence                        44455555556677778899999999999888888876544  7889999999999999999999999


Q ss_pred             ee
Q psy988          321 WK  322 (408)
Q Consensus       321 w~  322 (408)
                      |+
T Consensus       288 w~  289 (289)
T cd00200         288 WD  289 (289)
T ss_pred             cC
Confidence            96

>KOG0265|consensus

Probab=100.00  E-value=2.5e-34  Score=216.41  Aligned_cols=267  Identities=18%  Similarity=0.270  Sum_probs=218.3

Q ss_pred             CCceEEEEeccC-CeeEeEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            1 MDKTVRLWHISR-KECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         1 ~Dg~i~vwd~~~-~~~~~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      +|..|.+|++.. .+-...+ +|++.|..+.|.+ +++.|++++.|.+|+.||.++|+..  +..++|...|+++.-+.-
T Consensus        67 ~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~--rk~k~h~~~vNs~~p~rr  143 (338)
T KOG0265|consen   67 SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETGKRI--RKHKGHTSFVNSLDPSRR  143 (338)
T ss_pred             CcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecccceee--ehhccccceeeecCcccc
Confidence            589999999643 3333344 4999999999999 9999999999999999999999988  789999999999985544


Q ss_pred             CC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           79 GK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        79 ~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      |. ++.+++.||++++||+++......+..+         .+++++.|..++..+++|+-|+.|++||++.+.....+.+
T Consensus       144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG  214 (338)
T KOG0265|consen  144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG  214 (338)
T ss_pred             CCeEEEecCCCceEEEEeecccchhhccccc---------eeEEEEEecccccceeeccccCceeeeccccCcceEEeec
Confidence            54 5678889999999999977655444322         3799999999999999999999999999999999999999


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |...  |+.+..+|+|.++.+-+.|.++++||++.-.+.        ..++..+.+|..                     
T Consensus       215 h~Dt--It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--------~R~v~if~g~~h---------------------  263 (338)
T KOG0265|consen  215 HADT--ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--------QRCVKIFQGHIH---------------------  263 (338)
T ss_pred             ccCc--eeeEEeccCCCccccccccceEEEEEecccCCC--------CceEEEeecchh---------------------
Confidence            8876  889999999999999999999999998642110        111111111110                     


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                ..+......+|+|+++.+.+|+.|..+++||......+..+++|..  .|.++.|+|...+|.+++.|.+
T Consensus       264 ----------nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  264 ----------NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             ----------hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCce
Confidence                      1122334567889999999999999999999999999999999876  8899999999999999999999


Q ss_pred             EEEee
Q psy988          318 IYIWK  322 (408)
Q Consensus       318 i~iw~  322 (408)
                      |++=+
T Consensus       332 i~lge  336 (338)
T KOG0265|consen  332 IYLGE  336 (338)
T ss_pred             eEeec
Confidence            98744

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.5e-33  Score=259.58  Aligned_cols=268  Identities=14%  Similarity=0.208  Sum_probs=205.4

Q ss_pred             CCceEEEEeccCC--------eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE
Q psy988            1 MDKTVRLWHISRK--------ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA   72 (408)
Q Consensus         1 ~Dg~i~vwd~~~~--------~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~   72 (408)
                      .|++|+|||....        .+...+.+...|.+++|+|.++.+|++++.||+|++||+.+++..  ..+.+|...|.+
T Consensus       503 ~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~~H~~~V~~  580 (793)
T PLN00181        503 VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMKEHEKRVWS  580 (793)
T ss_pred             CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEecCCCCCEEE
Confidence            3899999997532        123344466789999999856889999999999999999988765  678899999999


Q ss_pred             EEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC-CCCCeEEEeeCCCeEEEEEccCcc
Q psy988           73 ANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM-PGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        73 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      ++|+| ++.+|++|+.||.|++||+.+......+.         +...+.++.|+ +++..|++|+.||.|++||+++.+
T Consensus       581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            99997 78999999999999999998876544332         12368899995 578999999999999999998765


Q ss_pred             -cceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          151 -LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       151 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                       ....+.+|..  .+.++.|. ++.+|++++.|+.|++||+......      .....+..                   
T Consensus       652 ~~~~~~~~h~~--~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~------~~~~~l~~-------------------  703 (793)
T PLN00181        652 LPLCTMIGHSK--TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG------INETPLHS-------------------  703 (793)
T ss_pred             ccceEecCCCC--CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc------cCCcceEE-------------------
Confidence             3555666554  47788887 6789999999999999998642100      00011122                   


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee-----------ccceecee
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG-----------YVNVSSQI  298 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~~~v~  298 (408)
                                      +..|...+..++|+|++.+|++|+.|+.|++|+.........+..           ..+...|.
T Consensus       704 ----------------~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~  767 (793)
T PLN00181        704 ----------------FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS  767 (793)
T ss_pred             ----------------EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence                            234455566667777788899999999999999876554433221           12234588


Q ss_pred             EEEEcCCCCEEEEecCCceEEEeec
Q psy988          299 KASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       299 ~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      +++|+|++.+|++|+.||.|+||++
T Consensus       768 ~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        768 SVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999999986

>KOG0289|consensus

Probab=100.00  E-value=1.3e-33  Score=222.97  Aligned_cols=286  Identities=19%  Similarity=0.261  Sum_probs=238.5

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH  102 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  102 (408)
                      ..+.++...| ....++||+.|..+.++|...++.+  ..++||...|+.+.|+|+...+++++.|-.|++|........
T Consensus       220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l--~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQIL--ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecC-CCCcceecCCCCceEEEecchhhhh--hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence            5688999998 5788999999999999999998877  799999999999999999999999999999999998765432


Q ss_pred             EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988          103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                      ..        ...|..+|+.+..+|.|.||++++.|++..+.|++++..+...........+.+.+|+|||..|.+|..|
T Consensus       297 ~~--------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d  368 (506)
T KOG0289|consen  297 TS--------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD  368 (506)
T ss_pred             cc--------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence            22        2356689999999999999999999999999999999988776665555668899999999999999999


Q ss_pred             ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988          183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE  262 (408)
Q Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (408)
                      |.+++||+..+.            ....+.+|.++|..++|+                                   .+|
T Consensus       369 ~~vkiwdlks~~------------~~a~Fpght~~vk~i~Fs-----------------------------------ENG  401 (506)
T KOG0289|consen  369 GVVKIWDLKSQT------------NVAKFPGHTGPVKAISFS-----------------------------------ENG  401 (506)
T ss_pred             ceEEEEEcCCcc------------ccccCCCCCCceeEEEec-----------------------------------cCc
Confidence            999999997532            234455555555555554                                   556


Q ss_pred             CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccce
Q psy988          263 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       263 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                      -+|++++.|+.|++||++..+..+++...... .+.++.|.+.|.+|+.++.|=.|++++-.+.          .|..+.
T Consensus       402 Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----------~W~~~~  470 (506)
T KOG0289|consen  402 YWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----------SWTEIK  470 (506)
T ss_pred             eEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeecceeEEEEEecccc----------cceeee
Confidence            66789999999999999998888887765443 6889999999999999988766776664432          345666


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      .+..|.+..+++.|..                ..+++++++.|..++++.+
T Consensus       471 ~~~~~sg~st~v~Fg~----------------~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  471 ELADHSGLSTGVRFGE----------------HAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hhhhcccccceeeecc----------------cceEEeeccchhheEEeec
Confidence            7778888999999998                8899999999999998865

>KOG1539|consensus

Probab=100.00  E-value=3.1e-33  Score=237.90  Aligned_cols=361  Identities=16%  Similarity=0.231  Sum_probs=279.8

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      +|.+.|||+.+++.+++++ +...|+++.-+| -=+.+|.|..+|+|.+++++.++.+  ..++...+.|++++|..||.
T Consensus       181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil--~sFk~d~g~VtslSFrtDG~  257 (910)
T KOG1539|consen  181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKIL--MSFKQDWGRVTSLSFRTDGN  257 (910)
T ss_pred             CCcEEEEEeccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEE--EEEEccccceeEEEeccCCC
Confidence            5889999999999999998 889999999999 8899999999999999999999877  56665568999999999997


Q ss_pred             E-EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc----cceee
Q psy988           81 F-AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN----LSCKY  155 (408)
Q Consensus        81 ~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~  155 (408)
                      . +++++..|.+.+||++..+......       ..|.+.+....|.|....+++++.|+.+++|=.+++.    .++.-
T Consensus       258 p~las~~~~G~m~~wDLe~kkl~~v~~-------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  258 PLLASGRSNGDMAFWDLEKKKLINVTR-------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             eeEEeccCCceEEEEEcCCCeeeeeee-------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence            6 4556666999999999877654443       3455788999999999999999999999888555432    23333


Q ss_pred             cCccccccceEEEEe-cCCCEEEEeecCceEEEeeeccceeeeeecc---------c----------C------------
Q psy988          156 KGYVNVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVR---------R----------D------------  203 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~----------~------------  203 (408)
                      .+|..+  ..++.|. .+|.++.+++.|++++.+++...........         .          +            
T Consensus       331 ~GHs~P--p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE  408 (910)
T KOG1539|consen  331 GGHSAP--PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE  408 (910)
T ss_pred             cCCCCC--chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence            455444  5567776 6788888888898888876532110000000         0          0            


Q ss_pred             ---------------------CCccc-------cccccccceEEEEEEeCCcceeeeecCCCC-------CCCceeee--
Q psy988          204 ---------------------RNDFW-------EGIKAHNAVVTCAVFAPCPELIIAQMEPDK-------SESTGYVL--  246 (408)
Q Consensus       204 ---------------------~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--  246 (408)
                                           .....       ..++.....+++++.+++|++.+.++..+.       .+.....+  
T Consensus       409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~  488 (910)
T KOG1539|consen  409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD  488 (910)
T ss_pred             hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc
Confidence                                 00000       011112367888999999999888655543       12222223  


Q ss_pred             -cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          247 -NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       247 -~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                       ..|..+|++++...-++.+++++.+|.+.+||..+..+...+...   ..+..+..+.....+|.+..|-.|+++|..+
T Consensus       489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t  565 (910)
T KOG1539|consen  489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVT  565 (910)
T ss_pred             CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---CCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence             478899999999999999999999999999999988877776642   2566778888888999999999999999998


Q ss_pred             cCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccccc
Q psy988          326 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                      .            +.++.+.+|.+.|++++|||                ||++|++++.|++||+||+.++..+..+-+.
T Consensus       566 ~------------kvvR~f~gh~nritd~~FS~----------------DgrWlisasmD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  566 R------------KVVREFWGHGNRITDMTFSP----------------DGRWLISASMDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             h------------hhhHHhhccccceeeeEeCC----------------CCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence            6            78888999999999999999                9999999999999999999999887765543

>KOG0293|consensus

Probab=100.00  E-value=3.6e-34  Score=224.70  Aligned_cols=264  Identities=22%  Similarity=0.277  Sum_probs=208.5

Q ss_pred             CceEEEEeccCCee---EeEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISRKEC---LCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~---~~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      |.+..+|.+.....   .+++ +|..+|..+.||| |.++|++|+.|..+.+||..++....... .++...+.+++|.|
T Consensus       245 D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~p  322 (519)
T KOG0293|consen  245 DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCP  322 (519)
T ss_pred             CceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEcc
Confidence            67788898765443   4444 3999999999999 99999999999999999999998763222 23568899999999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ||..+++|+.|+.+..||++......-...+        ...|.+++.++||+++++.+.|..|++++.++.........
T Consensus       323 Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr--------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise  394 (519)
T KOG0293|consen  323 DGFRFVTGSPDRTIIMWDLDGNILGNWEGVR--------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE  394 (519)
T ss_pred             CCceeEecCCCCcEEEecCCcchhhcccccc--------cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc
Confidence            9999999999999999999875422111111        13699999999999999999999999999987655544433


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      +   ..+.+++.+.+++++++.-.+..+++||++.            ...++.+.+|...-.                  
T Consensus       395 ~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e------------~~lv~kY~Ghkq~~f------------------  441 (519)
T KOG0293|consen  395 E---QPITSFSISKDGKLALVNLQDQEIHLWDLEE------------NKLVRKYFGHKQGHF------------------  441 (519)
T ss_pred             c---CceeEEEEcCCCcEEEEEcccCeeEEeecch------------hhHHHHhhcccccce------------------
Confidence            3   3378899999999999999999999999964            233455555543211                  


Q ss_pred             CCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEecCC
Q psy988          238 KSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN  315 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  315 (408)
                                     +-.-+|-. +..++++|++|+.|+||+..+++++..+.+|..  .|.+++|+| +-.++|+++.|
T Consensus       442 ---------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~ASasDD  504 (519)
T KOG0293|consen  442 ---------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFASASDD  504 (519)
T ss_pred             ---------------EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhccCCC
Confidence                           11122222 457899999999999999999999999999876  889999999 55688999999


Q ss_pred             ceEEEeeccc
Q psy988          316 QCIYIWKTHH  325 (408)
Q Consensus       316 g~i~iw~~~~  325 (408)
                      |+|+||....
T Consensus       505 gtIRIWg~~~  514 (519)
T KOG0293|consen  505 GTIRIWGPSD  514 (519)
T ss_pred             CeEEEecCCc
Confidence            9999998754

>KOG0641|consensus

Probab=100.00  E-value=6.6e-32  Score=195.69  Aligned_cols=307  Identities=14%  Similarity=0.197  Sum_probs=232.7

Q ss_pred             eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-------------CCceeeeeecCCceeeEEEEEecCCCE
Q psy988           15 CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-------------KKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus        15 ~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      ++..+.-...|.+++|+| .|.+.+.|+...+.+|-....             ......+.-+.|.+.|.|.+|+|+|.+
T Consensus        25 ~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel  103 (350)
T KOG0641|consen   25 AINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL  103 (350)
T ss_pred             EEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence            455566778999999999 999999999999998875421             112223456779999999999999999


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC----CCeEEEee-CCCeEEEEEccCcccceeec
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG----EDKILVTS-NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  156 (408)
                      +++|+.|.+|++...........   ........|.+.|..++|..+    +..|++++ .|..|++-|-.+++....+.
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~---g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNAT---GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             EEecCCCceEEEEeccccccccc---CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999999976654332211   111223456789999999653    44566654 46778888999999999999


Q ss_pred             CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988          157 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  236 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  236 (408)
                      +|.+.  +.+ .++-++-.+++|+.|.+|++||++-....            ..+..        .|...          
T Consensus       181 ghtgh--ila-lyswn~~m~~sgsqdktirfwdlrv~~~v------------~~l~~--------~~~~~----------  227 (350)
T KOG0641|consen  181 GHTGH--ILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCV------------NTLDN--------DFHDG----------  227 (350)
T ss_pred             CCccc--EEE-EEEecCcEEEccCCCceEEEEeeecccee------------eeccC--------cccCC----------
Confidence            98875  443 35667889999999999999999643211            11100        00000          


Q ss_pred             CCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          237 DKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                                ......|.+++..|.|++|++|-.|....+||++.+++++.+..|..  .|.++.|||...||++++.|.
T Consensus       228 ----------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  228 ----------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             ----------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecccc
Confidence                      01234677788888899999999999999999999999999987765  889999999999999999999


Q ss_pred             eEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      .|++-|+......        .-.+.....|...+-.+.|+|                ..-.+++.+.|.++.+|.++
T Consensus       296 ~ikltdlqgdla~--------el~~~vv~ehkdk~i~~rwh~----------------~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  296 KIKLTDLQGDLAH--------ELPIMVVAEHKDKAIQCRWHP----------------QDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEeecccchhh--------cCceEEEEeccCceEEEEecC----------------ccceeeeccCcceEEEeccC
Confidence            9999999864221        123344567999999999999                67788899999999999875

>KOG0973|consensus

Probab=100.00  E-value=1.8e-33  Score=246.41  Aligned_cols=306  Identities=15%  Similarity=0.246  Sum_probs=232.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEEe--CCCcEEEEecCCC----------CceeeeeecCCceeeEEEEEecCCCEEEEEecC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGS--LDGKLRLWNIPDK----------KVAVWNEVEGQTKLITAANFCENGKFAVVGSYD   88 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~--~dg~i~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   88 (408)
                      +...|.+++.+| ++..++||+  .||.++||+.+.-          ..........|.+.|.|+.|+|||++||+|+.|
T Consensus        12 ~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   12 NEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             CCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            456789999999 999999999  8999999997531          122235677899999999999999999999999


Q ss_pred             CEEEEEeccC----------CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           89 GRCIFYTTDQ----------LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        89 g~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      +.|.||....          +...............+|.+.|..++|+|++.+|++++.|++|.+|+..+.+.+..+.+|
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence            9999999873          011111111222233568899999999999999999999999999999999999999998


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      ...  |..+.|.|-|+||++-+.|++|++|++..-...            +.+..+-..                     
T Consensus       171 ~s~--VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~------------k~It~pf~~---------------------  215 (942)
T KOG0973|consen  171 QSL--VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE------------KSITKPFEE---------------------  215 (942)
T ss_pred             ccc--ccceEECCccCeeeeecCCceEEEEEcccceee------------Eeeccchhh---------------------
Confidence            866  778999999999999999999999996431110            000000000                     


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEe----cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC-----CC--
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVT----SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-----GK--  307 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~--  307 (408)
                              .........+.|||||++|++.    +.-.++.|.+-.+.+.-..+-+|..  ++.++.|+|.     .+  
T Consensus       216 --------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  216 --------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             --------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccC
Confidence                    0122334566677777777764    3345789999888888888889877  7888999881     11  


Q ss_pred             ----------EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc
Q psy988          308 ----------YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  377 (408)
Q Consensus       308 ----------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~  377 (408)
                                .+|+|+.|++|.||......+           ++....-....|..++|+|                ||.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-----------l~vi~~lf~~SI~DmsWsp----------------dG~  338 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-----------LFVIHNLFNKSIVDMSWSP----------------DGF  338 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCc-----------hhhhhhhhcCceeeeeEcC----------------CCC
Confidence                      578899999999999865422           2222223457899999999                999


Q ss_pred             EEEEEecCCeEEEEeCCCCCCc
Q psy988          378 VLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       378 ~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      .|..++.||+|.+..+...+--
T Consensus       339 ~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  339 SLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             eEEEEecCCeEEEEEcchHHhC
Confidence            9999999999999998865533

>KOG0305|consensus

Probab=100.00  E-value=3.9e-33  Score=231.74  Aligned_cols=278  Identities=16%  Similarity=0.243  Sum_probs=228.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE
Q psy988           27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH  106 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  106 (408)
                      -+.|+.  .+.||.|. ...|++|+-.++....+..+  +...|+++.|+++|.+|++|..+|.|.|||..+.+......
T Consensus       182 lldWss--~n~laVal-g~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  182 LLDWSS--ANVLAVAL-GQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             Hhhccc--CCeEEEEe-cceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence            356774  45677765 36899999999987643333  37889999999999999999999999999998766544332


Q ss_pred             EeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee-ecCccccccceEEEEecCCCEEEEeecCceE
Q psy988          107 VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGKYIVSGSENQCI  185 (408)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  185 (408)
                      .       .|...|.+++|.  +..+.+|+.++.|..+|++..+.... +.+|..  .|..+.|++|++++++|+.|+.+
T Consensus       257 ~-------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q--eVCgLkws~d~~~lASGgnDN~~  325 (484)
T KOG0305|consen  257 G-------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ--EVCGLKWSPDGNQLASGGNDNVV  325 (484)
T ss_pred             C-------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccc--eeeeeEECCCCCeeccCCCccce
Confidence            1       166799999997  77889999999999999998776655 555554  48899999999999999999999


Q ss_pred             EEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE
Q psy988          186 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI  265 (408)
Q Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (408)
                      .|||...            ..+...+..|...|.+++|+|-...+                                  |
T Consensus       326 ~Iwd~~~------------~~p~~~~~~H~aAVKA~awcP~q~~l----------------------------------L  359 (484)
T KOG0305|consen  326 FIWDGLS------------PEPKFTFTEHTAAVKALAWCPWQSGL----------------------------------L  359 (484)
T ss_pred             EeccCCC------------ccccEEEeccceeeeEeeeCCCccCc----------------------------------e
Confidence            9999843            23446678889999999999876555                                  5


Q ss_pred             EEe--cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE--ecCCceEEEeeccccCccccccccCccccc
Q psy988          266 LVT--SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS--GSENQCIYIWKTHHDYAKFSSVRRDRNDFW  341 (408)
Q Consensus       266 ~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  341 (408)
                      |+|  +.|+.|++||..+++.+.....   ...|.++.|++..+-|++  |..++.|.||+..+.            +.+
T Consensus       360 AsGGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------------~~~  424 (484)
T KOG0305|consen  360 ATGGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------------KLV  424 (484)
T ss_pred             EEcCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc------------cee
Confidence            664  6899999999999998877664   447899999999876665  456789999999875            678


Q ss_pred             eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ..+.+|..+|..++++|                ||..+++|+.|.++++|++-...
T Consensus       425 ~~l~gH~~RVl~la~SP----------------dg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  425 AELLGHTSRVLYLALSP----------------DGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             eeecCCcceeEEEEECC----------------CCCEEEEecccCcEEeccccCCC
Confidence            88999999999999999                99999999999999999997743

>KOG0277|consensus

Probab=100.00  E-value=1.9e-33  Score=206.73  Aligned_cols=264  Identities=14%  Similarity=0.223  Sum_probs=210.3

Q ss_pred             CceEEEEeccCCeeEeEE---EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-
Q psy988            2 DKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-   77 (408)
                      .|++.|-++...+-+...   .-.+.+..++|++...+.+++++.||+++|||+... ..++..++.|...|.++.|++ 
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccc
Confidence            377888888655544444   477899999999977889999999999999996443 335578999999999999998 


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceeec
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ++..+++++.|++|++|+....+.+..+        .+|...|...+|+|. .+.+++++.|+.+++||++.......+.
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~  187 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTF--------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE  187 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEee--------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence            4567888899999999998876654442        356789999999994 6678888999999999998755444566


Q ss_pred             CccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          157 GYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      .|.  ..++++.|+. +.+.+++|+.|+.|+.||+++-           ..++..+.+|.-.|+.+.|+|....+     
T Consensus       188 ah~--~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-----------r~pl~eL~gh~~AVRkvk~Sph~~~l-----  249 (311)
T KOG0277|consen  188 AHN--SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-----------RTPLFELNGHGLAVRKVKFSPHHASL-----  249 (311)
T ss_pred             ecc--ceeEeecccccCCcEEEecCCCceEEEEehhhc-----------cccceeecCCceEEEEEecCcchhhH-----
Confidence            665  4488899988 5677899999999999999753           34456677888888888888876554     


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEEEcC-CCCEEEEec
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSH-DGKYIVSGS  313 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  313 (408)
                                                   |++++.|-+++|||...+. .+.+...|..  .+..+.||+ ++.++|+++
T Consensus       250 -----------------------------LaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  250 -----------------------------LASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             -----------------------------hhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecc
Confidence                                         7889999999999987443 4444555544  677888988 677999999


Q ss_pred             CCceEEEeec
Q psy988          314 ENQCIYIWKT  323 (408)
Q Consensus       314 ~dg~i~iw~~  323 (408)
                      .|+.++||+.
T Consensus       299 WDe~l~Vw~p  308 (311)
T KOG0277|consen  299 WDELLYVWNP  308 (311)
T ss_pred             cccceeeecc
Confidence            9999999984

>KOG0300|consensus

Probab=100.00  E-value=2.9e-33  Score=212.75  Aligned_cols=305  Identities=14%  Similarity=0.207  Sum_probs=243.6

Q ss_pred             EeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           16 LCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        16 ~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      ++.+. |++.|+.++-.. ...++.+++.|.+.+||.++++.++  ..+.+|.+.|+++.|++.+.++++++.|++-.||
T Consensus       141 vre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL--~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACL--ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             hhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccce--eeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            33444 999999999988 7789999999999999999999988  6899999999999999999999999999999999


Q ss_pred             ec------cCCe---------ee--EE---------------EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           95 TT------DQLK---------YH--TQ---------------IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        95 ~~------~~~~---------~~--~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      ..      ....         ..  ..               ..........+|...|.+..|...++.+++++.|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            72      1100         00  00               00011122345778899999999999999999999999


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      +||+++++++..+.+|...  ...++-+|..+.+++.+.|.+.++||++..           ...+..+.+|...|+++.
T Consensus       298 lwDVEtge~v~~LtGHd~E--LtHcstHptQrLVvTsSrDtTFRLWDFRea-----------I~sV~VFQGHtdtVTS~v  364 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSE--LTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----------IQSVAVFQGHTDTVTSVV  364 (481)
T ss_pred             eeeeccCceeccccCcchh--ccccccCCcceEEEEeccCceeEeccchhh-----------cceeeeecccccceeEEE
Confidence            9999999999999998876  667888999999999999999999999742           334566788888888888


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEE
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~  301 (408)
                      |..+.                                    .+++|+.|.+|++||+++.+ ++.++..   ..++..++
T Consensus       365 F~~dd------------------------------------~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRva  405 (481)
T KOG0300|consen  365 FNTDD------------------------------------RVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVA  405 (481)
T ss_pred             EecCC------------------------------------ceeecCCCceEEEeeeccccCcceeeec---CCccceeE
Confidence            87653                                    36789999999999999865 4444443   33677889


Q ss_pred             EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                      .+..+..||.-..+..|++||++......        -+...-++|...|+|++|..+-              --.-|++
T Consensus       406 vs~g~~iIAiPhDNRqvRlfDlnG~RlaR--------lPrtsRqgHrRMV~c~AW~eeh--------------p~cnLft  463 (481)
T KOG0300|consen  406 VSKGHPIIAIPHDNRQVRLFDLNGNRLAR--------LPRTSRQGHRRMVTCCAWLEEH--------------PACNLFT  463 (481)
T ss_pred             eecCCceEEeccCCceEEEEecCCCcccc--------CCcccccccceeeeeeeccccC--------------ccccccc
Confidence            99988899999889999999998753210        1223456899999999998621              1246889


Q ss_pred             EecCCeEEEEeCCCCC
Q psy988          382 ADFNGVIRVFLNKTKP  397 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~~  397 (408)
                      +|.|..+.-|++...+
T Consensus       464 cGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  464 CGFDRMVAGWKINTPT  479 (481)
T ss_pred             ccccceeeeeEecccC
Confidence            9999999999998754

>KOG0268|consensus

Probab=100.00  E-value=2.6e-34  Score=221.76  Aligned_cols=288  Identities=18%  Similarity=0.253  Sum_probs=221.1

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +|.++|.|++=+|..-..+++|+.||.|+|||+....+.  ..+..|.+.|..+++..  ..+++++.|.+|+.|.++..
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~  139 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP  139 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence            499999999999933378999999999999999988877  79999999999999977  66899999999999998763


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC-EEEE
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVS  178 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  178 (408)
                      .      .....    ....+..+.-+..+..++++++  .|.|||.+...++..+.-...  .+.++.|+|-.. .|++
T Consensus       140 p------~~til----g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D--ti~svkfNpvETsILas  205 (433)
T KOG0268|consen  140 P------LHTIL----GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD--SISSVKFNPVETSILAS  205 (433)
T ss_pred             c------ceeee----ccccccccccccccccccccCc--eeeecccccCCccceeecCCC--ceeEEecCCCcchheee
Confidence            1      11111    1235666666666778888876  599999998888888765443  477899999654 5667


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      +..|+.|.+||++.+.+...            +.                                    .......|+|
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~K------------Vi------------------------------------~~mRTN~Isw  237 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKK------------VI------------------------------------LTMRTNTICW  237 (433)
T ss_pred             eccCCceEEEecccCCccce------------ee------------------------------------eeccccceec
Confidence            77999999999987533211            10                                    0112234566


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  337 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  337 (408)
                      +|.+-.++++++|..++.||++..+ ++..+.+|..  .|.++.|||.|+-+++|+.|.+|+||..+.+...        
T Consensus       238 nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs--AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR--------  307 (433)
T KOG0268|consen  238 NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS--AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR--------  307 (433)
T ss_pred             Cccccceeeccccccceehhhhhhcccchhhcccce--eEEEeccCCCcchhccccccceEEEeecCCCcch--------
Confidence            6656668889999999999998754 4455566544  8899999999999999999999999999876321        


Q ss_pred             cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                       ....+  ..-..|.++.||.                |.+++++|++|+.||+|.....++...+
T Consensus       308 -diYht--kRMq~V~~Vk~S~----------------Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  308 -DIYHT--KRMQHVFCVKYSM----------------DSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             -hhhhH--hhhheeeEEEEec----------------cccEEEecCCCcceeeeecchhhhcCCC
Confidence             11111  1225699999999                9999999999999999998877665543

>KOG0647|consensus

Probab=100.00  E-value=1.7e-32  Score=206.76  Aligned_cols=266  Identities=15%  Similarity=0.251  Sum_probs=205.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      -.+.|.+++|||+...+++.+|.||+|++|+++.. .... +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            56889999999977777889999999999999884 4433 677889999999999999999999999999999999998


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCC--eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGED--KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      +....         ..|..+|..+.|-+...  .|++|+.|.+|+.||++...++.++.....   +.++  +-....++
T Consensus       105 Q~~~v---------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---vYa~--Dv~~pm~v  170 (347)
T KOG0647|consen  105 QVSQV---------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---VYAA--DVLYPMAV  170 (347)
T ss_pred             Ceeee---------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---eeeh--hccCceeE
Confidence            54322         24667999999987665  789999999999999998888877765443   3322  22345678


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      ++..++.|.+|+++++...+....          ...+-                                   .+++++
T Consensus       171 Vata~r~i~vynL~n~~te~k~~~----------SpLk~-----------------------------------Q~R~va  205 (347)
T KOG0647|consen  171 VATAERHIAVYNLENPPTEFKRIE----------SPLKW-----------------------------------QTRCVA  205 (347)
T ss_pred             EEecCCcEEEEEcCCCcchhhhhc----------Ccccc-----------------------------------eeeEEE
Confidence            888899999999976543321110          01122                                   334444


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCC--eeeeEEeeccc-------eeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDL--NLSCKYKGYVN-------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                      ..+|.+..+.|+-+|.+.+..+..+  +.-..|+.|..       .-.|.+++|+|.-..|++++.||++.+||-+..  
T Consensus       206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar--  283 (347)
T KOG0647|consen  206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR--  283 (347)
T ss_pred             EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh--
Confidence            4455555688999999999998876  44455666653       235678999999999999999999999998765  


Q ss_pred             cccccccCccccceeeeeeccceEEEEecC
Q psy988          329 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                                ..+.....|..+|++.+|+.
T Consensus       284 ----------~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  284 ----------TKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             ----------hhhhccCcCCCccceeEecC
Confidence                      44556677999999999999

>KOG1539|consensus

Probab=100.00  E-value=1.6e-32  Score=233.58  Aligned_cols=350  Identities=19%  Similarity=0.248  Sum_probs=272.8

Q ss_pred             CCceEEEEeccCCeeEeEEEeC-CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQHI-DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|.|+|++.++.+..++|. +.|++++|..++...+|+|+..|.+.+||++..+... .....|.+.|....|.|..
T Consensus       222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~-v~~nah~~sv~~~~fl~~e  300 (910)
T KOG1539|consen  222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN-VTRNAHYGSVTGATFLPGE  300 (910)
T ss_pred             cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee-eeeccccCCcccceecCCC
Confidence            4899999999999999999996 9999999998455567778788999999999887653 4455888999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC-CCCCeEEEeeCCCeEEEEEccCccc-------
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM-PGEDKILVTSNDSRIRLYDLRDLNL-------  151 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-------  151 (408)
                      ..+++++.|+.+++|-.+++....    +..+...+|..+..++.|. .++..+.+++.|++++.+++.....       
T Consensus       301 pVl~ta~~DnSlk~~vfD~~dg~p----R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  301 PVLVTAGADNSLKVWVFDSGDGVP----RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             ceEeeccCCCceeEEEeeCCCCcc----hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence            999999999999999777555432    2233345777899999987 5777888888888877776532000       


Q ss_pred             -----------------------------------------------------------ceeecCc---cccccceEEEE
Q psy988          152 -----------------------------------------------------------SCKYKGY---VNVSSQIKASF  169 (408)
Q Consensus       152 -----------------------------------------------------------~~~~~~~---~~~~~~~~~~~  169 (408)
                                                                                 ...+...   .....+.+++.
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v  456 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV  456 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence                                                                       0000000   01245678899


Q ss_pred             ecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC------CCCce
Q psy988          170 SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------SESTG  243 (408)
Q Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~  243 (408)
                      ++.|++.+.|...|.|-+|+++.+.....         ...-..|..+|+.++...-++.+++....+-      .....
T Consensus       457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~s---------f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKS---------FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             eccCceEEEeccCCeEEEEEcccCeeecc---------cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            99999999999999999999987644321         1123578999999999988888877644332      01111


Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      ...-.-+..+..+..+.....++.+..|-.|+++|..+.+.++.|.+|.+  .+++++|||||++|++++.|++|++||+
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n--ritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN--RITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc--ceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            11112356778888888899999999999999999999999999999877  8999999999999999999999999999


Q ss_pred             cccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC-CeEEEEeCCC
Q psy988          324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN-GVIRVFLNKT  395 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~v~iw~~~~  395 (408)
                      .++            .++..+ .-..++.++.|+|                +|.+|||+..| .-|++|...+
T Consensus       606 pt~------------~lID~~-~vd~~~~sls~SP----------------ngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  606 PTG------------TLIDGL-LVDSPCTSLSFSP----------------NGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCc------------ceeeeE-ecCCcceeeEECC----------------CCCEEEEEEecCceEEEEEchh
Confidence            987            344333 2467889999999                99999999998 6699997654

>KOG1407|consensus

Probab=100.00  E-value=6.2e-33  Score=204.88  Aligned_cols=257  Identities=18%  Similarity=0.247  Sum_probs=209.1

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDS  139 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  139 (408)
                      +.+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+....      ....+|.+.|..++|+| ..+.|++++.|.
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------~~~~gh~~svdql~w~~~~~d~~atas~dk   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------LVYRGHTDSVDQLCWDPKHPDLFATASGDK   87 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------hcccCCCcchhhheeCCCCCcceEEecCCc
Confidence            46778999999999999999999999999999999987643222      22345667888889887 456888899999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      .|++||.+.+++..........   ..+.|+|+|+++++++.|..|.+.|.++-+....             ......+ 
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~en---i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-------------~~~~~e~-  150 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGEN---INITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-------------EQFKFEV-  150 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcc---eEEEEcCCCCEEEEecCcccEEEEEecccceeeh-------------hccccee-
Confidence            9999999999998877654443   3478999999999999999999999875322111             1112223 


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                                                        ..++|+.++.+++.....|+|.|......+++..++.|..  .+.+
T Consensus       151 ----------------------------------ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nCic  194 (313)
T KOG1407|consen  151 ----------------------------------NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NCIC  194 (313)
T ss_pred             ----------------------------------eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ceEE
Confidence                                              3344444555566667789999999999999999998864  7889


Q ss_pred             EEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEE
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      +.|+|+|+++|+|+.|-.+.+||++..            -+++.+..+.-+|..+.|+.                ||++|
T Consensus       195 I~f~p~GryfA~GsADAlvSLWD~~EL------------iC~R~isRldwpVRTlSFS~----------------dg~~l  246 (313)
T KOG1407|consen  195 IEFDPDGRYFATGSADALVSLWDVDEL------------ICERCISRLDWPVRTLSFSH----------------DGRML  246 (313)
T ss_pred             EEECCCCceEeeccccceeeccChhHh------------hhheeeccccCceEEEEecc----------------Cccee
Confidence            999999999999999999999999876            67788888999999999999                99999


Q ss_pred             EEEecCCeEEEEeCCCCCCcccccc
Q psy988          380 VSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       380 ~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                      |+|+.|..|-|=++++|.+...+|.
T Consensus       247 ASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             eccCccceEEeEecccCCeEEEeec
Confidence            9999999999988888887666554

>KOG2096|consensus

Probab=100.00  E-value=6.2e-32  Score=205.41  Aligned_cols=304  Identities=16%  Similarity=0.202  Sum_probs=208.2

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee--ecCCceeeEEEEEecCCCEEEEE-ecCCEEEEEec
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE--VEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTT   96 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~   96 (408)
                      +|.+.|++++|+. ||++|||++.|+.|++|++++-....-+.  ..-.-+..+.+.|.||-+-++.. -...++++|.+
T Consensus        84 gH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            3999999999999 99999999999999999997743221111  11112246788999997765544 44568999987


Q ss_pred             cCCee----eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           97 DQLKY----HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        97 ~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      ...+.    ..........-+..|.-.+..+-...++.++++++.|..|.+|+++ |+.+..+......  -...+.+|+
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~aavSP~  239 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDAAVSPD  239 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccceeeCCC
Confidence            54322    1111112222334455677778788888999999999999999998 7777766543332  345789999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      |+++++++..-.|++|.+--.                               .+|..        ........+.+|...
T Consensus       240 GRFia~~gFTpDVkVwE~~f~-------------------------------kdG~f--------qev~rvf~LkGH~sa  280 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFT-------------------------------KDGTF--------QEVKRVFSLKGHQSA  280 (420)
T ss_pred             CcEEEEecCCCCceEEEEEec-------------------------------cCcch--------hhhhhhheeccchhh
Confidence            999999999889999986321                               11110        001111223355555


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCC----C---eeeeEEe--eccceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRD----L---NLSCKYK--GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~---~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      |..++|+++...+++.+.||++++||.+-    +   +.++...  .+........+.++|+|+.||.+. ...+++|..
T Consensus       281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s  359 (420)
T KOG2096|consen  281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS  359 (420)
T ss_pred             eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence            66666666677789999999999999752    1   2222221  122233445899999999998765 447999998


Q ss_pred             cccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      +++..           .-..-..|...|++++|++                +|++++|+| |..+++.....
T Consensus       360 e~g~~-----------~~~~e~~h~~~Is~is~~~----------------~g~~~atcG-dr~vrv~~ntp  403 (420)
T KOG2096|consen  360 EDGKD-----------YPELEDIHSTTISSISYSS----------------DGKYIATCG-DRYVRVIRNTP  403 (420)
T ss_pred             ccCcc-----------chhHHHhhcCceeeEEecC----------------CCcEEeeec-ceeeeeecCCC
Confidence            87621           1112245999999999999                999999998 78899887443

>KOG0275|consensus

Probab=100.00  E-value=7.8e-34  Score=216.52  Aligned_cols=264  Identities=15%  Similarity=0.217  Sum_probs=222.6

Q ss_pred             CCceEEEEeccCCeeEeEEE---------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceee
Q psy988            1 MDKTVRLWHISRKECLCCFQ---------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLI   70 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~---------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v   70 (408)
                      .||-|.|||..+|+..+.++         +.++|.|++||. |...||+|+.||.|++|.+.+|.+.  +.+. .|...|
T Consensus       233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~Cl--RrFdrAHtkGv  309 (508)
T KOG0275|consen  233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCL--RRFDRAHTKGV  309 (508)
T ss_pred             ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHH--HHhhhhhccCe
Confidence            48999999999998765442         889999999999 9999999999999999999999987  4555 899999


Q ss_pred             EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +++.|+.|+..+++++.|.++++--+..++....+        .+|.+.|+...|.++|..+++++.||+|++|+..+.+
T Consensus       310 t~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf--------rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  310 TCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF--------RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             eEEEEccCcchhhcccccceEEEeccccchhHHHh--------cCccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence            99999999999999999999999999887764433        4677899999999999999999999999999999999


Q ss_pred             cceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          151 LSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      ++.+++.......+.++-.-| +...++++...+++++.+++..             .++.+....              
T Consensus       382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-------------vVrsfsSGk--------------  434 (508)
T KOG0275|consen  382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-------------VVRSFSSGK--------------  434 (508)
T ss_pred             hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-------------EEeeeccCC--------------
Confidence            999998877777777777666 4567888888999999988532             111111100              


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  309 (408)
                                        ..++...+.+.+|.|.++++.++|+.++.|...+|++...+..|..  .+..++-+|..+.|
T Consensus       435 ------------------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNll  494 (508)
T KOG0275|consen  435 ------------------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLL  494 (508)
T ss_pred             ------------------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchh
Confidence                              1123344556788888899999999999999999999999988766  77889999999999


Q ss_pred             EEecCCceEEEee
Q psy988          310 VSGSENQCIYIWK  322 (408)
Q Consensus       310 ~~~~~dg~i~iw~  322 (408)
                      |+-++||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999995

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.3e-31  Score=230.51  Aligned_cols=150  Identities=18%  Similarity=0.235  Sum_probs=124.3

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc------eeeeeecCCceeeEEEE
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV------AVWNEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~v~~~~   74 (408)
                      ++.|++|+......+..+. |.+.|.+++|+|.++++||+|+.||+|+|||+.++..      .....+.+|...|.+++
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID  132 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence            5788999987777777776 9999999999994488999999999999999976431      12246788999999999


Q ss_pred             EecCCCE-EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce
Q psy988           75 FCENGKF-AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        75 ~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      |+|++.. |++++.|++|++||+++++....+.         +...|.+++|+|+|..|++++.|+.|++||+++++.+.
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence            9999876 4689999999999999876543321         22479999999999999999999999999999988877


Q ss_pred             eecCccc
Q psy988          154 KYKGYVN  160 (408)
Q Consensus       154 ~~~~~~~  160 (408)
                      .+.+|..
T Consensus       204 tl~gH~g  210 (568)
T PTZ00420        204 SFHIHDG  210 (568)
T ss_pred             EEecccC
Confidence            7776654

>KOG0274|consensus

Probab=100.00  E-value=1.2e-31  Score=231.49  Aligned_cols=257  Identities=16%  Similarity=0.301  Sum_probs=217.9

Q ss_pred             CceEEEEeccCCeeEeE-EE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCC-FQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~-~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      |++|++||..++..+.. +. |.+.|++++|.. .+.+|++|+.|.++++||..++++.  ..+.+|...|.++..  ..
T Consensus       227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~gh~stv~~~~~--~~  301 (537)
T KOG0274|consen  227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECT--HSLQGHTSSVRCLTI--DP  301 (537)
T ss_pred             CceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEE--EEecCCCceEEEEEc--cC
Confidence            68899999999998887 65 999999999987 8999999999999999999999988  789999999999876  44


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ..+++|+.|.+|++|+++++.......        +|..+|.++..+  +..+++|+.|+.|++||+.+++++..+.+|.
T Consensus       302 ~~~~sgs~D~tVkVW~v~n~~~l~l~~--------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~  371 (537)
T KOG0274|consen  302 FLLVSGSRDNTVKVWDVTNGACLNLLR--------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT  371 (537)
T ss_pred             ceEeeccCCceEEEEeccCcceEEEec--------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence            578889999999999999876644332        367899999997  8899999999999999999999999999987


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ..  |.++.+.+. ..+++|+.|+.|++||+++..           .++..+.+|..-+..+.+                
T Consensus       372 ~~--V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-----------~c~~tl~~h~~~v~~l~~----------------  421 (537)
T KOG0274|consen  372 GR--VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-----------KCIHTLQGHTSLVSSLLL----------------  421 (537)
T ss_pred             ce--EEEEEecCc-ceEEeeeeccceEeecCCchh-----------hhhhhhcCCccccccccc----------------
Confidence            66  777766654 889999999999999997631           456667777766644433                


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                                           .+++|++++.|++|++||..++++++.+.+. +...+..+++.  ...+++++.||.++
T Consensus       422 ---------------------~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~  477 (537)
T KOG0274|consen  422 ---------------------RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVK  477 (537)
T ss_pred             ---------------------ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeE
Confidence                                 3567899999999999999999999999884 33366666665  56788899999999


Q ss_pred             EeeccccC
Q psy988          320 IWKTHHDY  327 (408)
Q Consensus       320 iw~~~~~~  327 (408)
                      +||+.++.
T Consensus       478 l~dl~~~~  485 (537)
T KOG0274|consen  478 LWDLRSGT  485 (537)
T ss_pred             EEecccCc
Confidence            99999873

>KOG0305|consensus

Probab=100.00  E-value=8.2e-32  Score=223.93  Aligned_cols=261  Identities=16%  Similarity=0.332  Sum_probs=216.4

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC-CceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-QTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~   79 (408)
                      ...|++|+..+++...... +.+.|+++.|++ +|.+|++|..+|.|.|||..+.+..  ..+.+ |...|-+++|.  +
T Consensus       196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~  270 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--S  270 (484)
T ss_pred             cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--C
Confidence            3579999999999777776 599999999999 9999999999999999999887766  57777 99999999997  6


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ..+.+|+.++.|..+|++..+....       ...+|...|..+.|++++.++++|+.|+.+.|||....+++..+..|.
T Consensus       271 ~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~  343 (484)
T KOG0305|consen  271 SVLSSGSRDGKILNHDVRISQHVVS-------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT  343 (484)
T ss_pred             ceEEEecCCCcEEEEEEecchhhhh-------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc
Confidence            7899999999999999987654333       145677899999999999999999999999999998888888888877


Q ss_pred             ccccceEEEEec-CCCEEEEee--cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988          160 NVSSQIKASFSH-DGKYIVSGS--ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  236 (408)
Q Consensus       160 ~~~~~~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  236 (408)
                      ..  |..++|+| ....||+|+  .|+.|++||..++....            . .                        
T Consensus       344 aA--VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~------------~-v------------------------  384 (484)
T KOG0305|consen  344 AA--VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID------------S-V------------------------  384 (484)
T ss_pred             ee--eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec------------c-c------------------------
Confidence            65  77899999 556788764  59999999997643221            1 1                        


Q ss_pred             CCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          237 DKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                 ..+..|..+.|++..+.|++  |..++.|.||+..+.+.+..+.+|..  .|..+++||||..+++|+.
T Consensus       385 -----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~  451 (484)
T KOG0305|consen  385 -----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAA  451 (484)
T ss_pred             -----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecc
Confidence                       22334455555555554554  45677999999999999999999877  7899999999999999999


Q ss_pred             CceEEEeecccc
Q psy988          315 NQCIYIWKTHHD  326 (408)
Q Consensus       315 dg~i~iw~~~~~  326 (408)
                      |.++++|++-..
T Consensus       452 DETlrfw~~f~~  463 (484)
T KOG0305|consen  452 DETLRFWNLFDE  463 (484)
T ss_pred             cCcEEeccccCC
Confidence            999999998764

>KOG0310|consensus

Probab=100.00  E-value=9.7e-32  Score=215.46  Aligned_cols=291  Identities=16%  Similarity=0.262  Sum_probs=225.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ..+.|.+++|+|....-+|+.+. -.+.||+..+....  +.+......+.++.|..||++|++|...|.|++||..+..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~--k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR--KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV  101 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh--hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH
Confidence            45789999999966655666654 67999998887665  5677778889999999999999999999999999965422


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC-CEEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVS  178 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  178 (408)
                              ..+...+|..++..+.|+|+++. |++|+.|+.+++||+.+......+.+|..-  +.+.+++|.. ..+++
T Consensus       102 --------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY--VR~g~~~~~~~hivvt  171 (487)
T KOG0310|consen  102 --------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY--VRCGDISPANDHIVVT  171 (487)
T ss_pred             --------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce--eEeeccccCCCeEEEe
Confidence                    22334567789999999997665 556777889999999988865566776654  8899999954 47889


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      |+.||.|++||++...                     ..+..+                          .|+.+|..+.+
T Consensus       172 GsYDg~vrl~DtR~~~---------------------~~v~el--------------------------nhg~pVe~vl~  204 (487)
T KOG0310|consen  172 GSYDGKVRLWDTRSLT---------------------SRVVEL--------------------------NHGCPVESVLA  204 (487)
T ss_pred             cCCCceEEEEEeccCC---------------------ceeEEe--------------------------cCCCceeeEEE
Confidence            9999999999997531                     111111                          56677777788


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  337 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  337 (408)
                      .|.|..|++++. ..+++||+-+| +.+..+..|..  .|+|+++..++..|++|+-|+.|++||+.+-           
T Consensus       205 lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-----------  270 (487)
T KOG0310|consen  205 LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-----------  270 (487)
T ss_pred             cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc--eEEEEEeecCCceEeecccccceEEEEccce-----------
Confidence            888888888765 46999999855 44444444544  8999999999999999999999999997654           


Q ss_pred             cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                       +.+..+. -.++|.+++.+|                +++.++.|..||.+.+=+....++....|
T Consensus       271 -Kvv~s~~-~~~pvLsiavs~----------------dd~t~viGmsnGlv~~rr~~~k~k~s~~~  318 (487)
T KOG0310|consen  271 -KVVHSWK-YPGPVLSIAVSP----------------DDQTVVIGMSNGLVSIRRREVKKKPSKEP  318 (487)
T ss_pred             -EEEEeee-cccceeeEEecC----------------CCceEEEecccceeeeehhhcccCCCccc
Confidence             4444444 568999999999                88999999999999888666665554443

>KOG0283|consensus

Probab=100.00  E-value=3.3e-32  Score=232.51  Aligned_cols=257  Identities=16%  Similarity=0.207  Sum_probs=198.0

Q ss_pred             eeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee---------------------------e----------
Q psy988           61 NEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY---------------------------H----------  102 (408)
Q Consensus        61 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------------~----------  102 (408)
                      +.+. .|.+.|.++.|++||+|||+|+.||.|+||.+...+.                           .          
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3455 8999999999999999999999999999999866110                           0          


Q ss_pred             ---------------EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEE
Q psy988          103 ---------------TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA  167 (408)
Q Consensus       103 ---------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  167 (408)
                                     ..+....+....+|.+.|.++.|+. +++|++++.|.+|++|++...++++.|..   ...|+|+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H---ndfVTcV  415 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH---NDFVTCV  415 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec---CCeeEEE
Confidence                           0000111223357888999999996 56999999999999999999998888763   3459999


Q ss_pred             EEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeee
Q psy988          168 SFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL  246 (408)
Q Consensus       168 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
                      +|+| |.+||++|+-||.++||++...+..                                                .+
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv------------------------------------------------~W  447 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVV------------------------------------------------DW  447 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeE------------------------------------------------ee
Confidence            9999 7899999999999999998542110                                                11


Q ss_pred             cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc------eeceeEEEEcCCC-CEEEEecCCceEE
Q psy988          247 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN------VSSQIKASFSHDG-KYIVSGSENQCIY  319 (408)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~~~~~dg~i~  319 (408)
                      ..-..-|++++|.|||++.++|+.+|.+++|+....+....+.-+..      ...|+.+.|.|.. ..|++.+.|..|+
T Consensus       448 ~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR  527 (712)
T KOG0283|consen  448 NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR  527 (712)
T ss_pred             hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence            12234577788888888899999999999999998887766543321      2368999998743 3577778899999


Q ss_pred             EeeccccCccccccccCccccceeeeeecc--ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          320 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNA--VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       320 iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      |||.++.            .++..++|+..  .=....|+.                ||++|+++++|..|++|++....
T Consensus       528 I~d~~~~------------~lv~KfKG~~n~~SQ~~Asfs~----------------Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  528 IYDGRDK------------DLVHKFKGFRNTSSQISASFSS----------------DGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             EEeccch------------hhhhhhcccccCCcceeeeEcc----------------CCCEEEEeecCceEEEEeCCCCc
Confidence            9999765            56777776543  234678888                99999999999999999985443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.7e-31  Score=229.24  Aligned_cols=275  Identities=14%  Similarity=0.111  Sum_probs=192.8

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee-----------eeeecCCceeeEEEEEec-CCCEEEEEecC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV-----------WNEVEGQTKLITAANFCE-NGKFAVVGSYD   88 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d   88 (408)
                      |-..|.....++ ++..+++++.+.....|+...+....           ...+.+|.+.|.+++|+| ++++|++++.|
T Consensus        19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            455667777777 76667777777777778765443211           124678999999999999 88999999999


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecCccccccceEE
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA  167 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  167 (408)
                      ++|++||+.+....... ........+|...|.+++|+|++ +.|++++.|+.|++||+++++....+..|...  +.++
T Consensus        98 gtIkIWdi~~~~~~~~~-~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~--V~sl  174 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNI-SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ--ITSL  174 (493)
T ss_pred             CEEEEEecCCCcccccc-CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc--eEEE
Confidence            99999999765321100 01111234577899999999975 68999999999999999999888777776544  8899


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccce-EEEEEEeCCcceeeeecCCCCCCCceeee
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV-VTCAVFAPCPELIIAQMEPDKSESTGYVL  246 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
                      +|+|++.+|++++.|+.|++||++++..            +..+..|... ...+.|.                      
T Consensus       175 a~spdG~lLatgs~Dg~IrIwD~rsg~~------------v~tl~~H~~~~~~~~~w~----------------------  220 (493)
T PTZ00421        175 EWNLDGSLLCTTSKDKKLNIIDPRDGTI------------VSSVEAHASAKSQRCLWA----------------------  220 (493)
T ss_pred             EEECCCCEEEEecCCCEEEEEECCCCcE------------EEEEecCCCCcceEEEEc----------------------
Confidence            9999999999999999999999976432            1223333322 2233343                      


Q ss_pred             cCCCceeeeeccCCCCCeEEEe----cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEe
Q psy988          247 NATGRKISGIEPMPGEDKILVT----SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIW  321 (408)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw  321 (408)
                                   +++..++++    +.|+.|++||+++...............+....|++++++|++++ .|+.|++|
T Consensus       221 -------------~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw  287 (493)
T PTZ00421        221 -------------KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF  287 (493)
T ss_pred             -------------CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence                         444444443    358999999998765333222222223455668999999999887 59999999


Q ss_pred             eccccCccccccccCccccceeee-eeccceEEEEecC
Q psy988          322 KTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAP  358 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~  358 (408)
                      |+..+.            ++.... .+..++..++|.|
T Consensus       288 dl~~~~------------~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        288 ELMNER------------LTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             EeeCCc------------eEEEeeccCCCCCcceEecc
Confidence            998763            222222 2445677788877

>KOG2106|consensus

Probab=100.00  E-value=3.9e-30  Score=207.28  Aligned_cols=343  Identities=14%  Similarity=0.193  Sum_probs=235.9

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCC-CEEEEE--eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDD-RYFLSG--SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~-~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .++|||..+-..++.++ ....|.|++|++.++ .+|+..  +.+..+.+||.+.+...  ...+..+..|....|+|.+
T Consensus       135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~--~~vk~sne~v~~a~FHPtd  212 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL--GPVKTSNEVVFLATFHPTD  212 (626)
T ss_pred             eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc--CcceeccceEEEEEeccCC
Confidence            58999999988888888 778899999998544 444443  33566899999887655  4566667789999999988


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      .-++.....|.+.+|+.+++.......+......    ..|.|++|.+++ .+++|..+|.|.||+..+.+..+....|.
T Consensus       213 ~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek----k~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~  287 (626)
T KOG2106|consen  213 PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK----KFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAHD  287 (626)
T ss_pred             CcEEEEeCCceEEEEEccCCceEEEeeccccccc----eEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeecC
Confidence            7777777889999999998876655443332222    589999999977 57899999999999998777666655544


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCC----------------------------cccccc
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN----------------------------DFWEGI  211 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------------------~~~~~~  211 (408)
                        ..+.+++...+|. |++|+.|..|..||-.-.+.....++...+                            ......
T Consensus       288 --ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v  364 (626)
T KOG2106|consen  288 --GGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV  364 (626)
T ss_pred             --CceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence              4588999999996 555999999999993322111111111100                            011122


Q ss_pred             ccccceEEEEEEeCCcceeeeecCCCC----CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE
Q psy988          212 KAHNAVVTCAVFAPCPELIIAQMEPDK----SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK  287 (408)
Q Consensus       212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  287 (408)
                      .+|......++.+|+...++....+..    .............+..++.|+|.| .++.|...|...+.|.++..++..
T Consensus       365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~  443 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI  443 (626)
T ss_pred             EecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence            345555556666666666555433221    111111222334566777777777 777777777777777777444433


Q ss_pred             EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          288 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       288 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      -   ....++..++|+|+|.+||.|+.|+.|+||.+..+...+.          ..-+.|.++|+.+.|++|++++.+.+
T Consensus       444 ~---~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~----------r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  444 H---TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS----------RVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             E---ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE----------EeeeecCceeEEeeecCCCceEEecc
Confidence            2   2355888999999999999999999999999987643321          12223448999999999777666555


Q ss_pred             CCC
Q psy988          368 EPD  370 (408)
Q Consensus       368 ~~~  370 (408)
                      .+.
T Consensus       511 ~d~  513 (626)
T KOG2106|consen  511 GDY  513 (626)
T ss_pred             Cce
Confidence            443

>KOG1063|consensus

Probab=100.00  E-value=9.8e-31  Score=218.40  Aligned_cols=353  Identities=16%  Similarity=0.241  Sum_probs=252.5

Q ss_pred             eEEEEeccCC--eeEeEEE-eCCceEEEEEcCCC--CCEEEEEeCCCcEEEEecCCCC-------------------cee
Q psy988            4 TVRLWHISRK--ECLCCFQ-HIDFVTAICFHPRD--DRYFLSGSLDGKLRLWNIPDKK-------------------VAV   59 (408)
Q Consensus         4 ~i~vwd~~~~--~~~~~~~-h~~~v~~~~~sp~~--~~~l~t~~~dg~i~iw~~~~~~-------------------~~~   59 (408)
                      .|.++.-...  +.+..+. |.+.|.+++|....  .-+||++|.|..|+||.+.-+.                   ...
T Consensus       170 ~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~  249 (764)
T KOG1063|consen  170 VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI  249 (764)
T ss_pred             EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence            4445543333  3344444 99999999998733  3488999999999999974322                   000


Q ss_pred             e----------eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee--EEEEEeeccccccCCCCeEEEeeCC
Q psy988           60 W----------NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH--TQIHVRSTRGKNATGRKISGIEPMP  127 (408)
Q Consensus        60 ~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~  127 (408)
                      .          ..+.+|...|.++.|+|.+..|++++.|.++.+|..++...+  ....+....   +......+..|+|
T Consensus       250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g---g~a~GF~g~lw~~  326 (764)
T KOG1063|consen  250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG---GSAGGFWGGLWSP  326 (764)
T ss_pred             eeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc---ccccceeeEEEcC
Confidence            0          124599999999999999999999999999999988765333  222222222   3334688899999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCc---ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCC
Q psy988          128 GEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  204 (408)
Q Consensus       128 ~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  204 (408)
                      +++.+++-+..|..++|.....   .....+.+|...  |..++|+|.|.+|++.+.|.+-|+|-.-..+......    
T Consensus       327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~--V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi----  400 (764)
T KOG1063|consen  327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG--VKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI----  400 (764)
T ss_pred             CCCEEEEecccCcEEEEeccCccceeecccccccccc--ceeeeecCCCCEEEEeccccceeeecccccccceeee----
Confidence            9999999999999999983321   122334555544  8899999999999999999999998654221112111    


Q ss_pred             CccccccccccceEEEEEEeC-Ccceeeee-------------------------------------------------c
Q psy988          205 NDFWEGIKAHNAVVTCAVFAP-CPELIIAQ-------------------------------------------------M  234 (408)
Q Consensus       205 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-------------------------------------------------~  234 (408)
                          ..-+.|...++|+++-+ +-+++ .+                                                 .
T Consensus       401 ----aRPQiHGyDl~c~~~vn~~~~FV-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~  475 (764)
T KOG1063|consen  401 ----ARPQIHGYDLTCLSFVNEDLQFV-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF  475 (764)
T ss_pred             ----cccccccccceeeehccCCceee-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence                22233444555555544 21111 00                                                 0


Q ss_pred             C-C-C--C------------------------------CCCceeeecCCCceeeeeccCCCCCeEEEecCC-----CeEE
Q psy988          235 E-P-D--K------------------------------SESTGYVLNATGRKISGIEPMPGEDKILVTSND-----SRIR  275 (408)
Q Consensus       235 ~-~-~--~------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~  275 (408)
                      . . .  .                              ..+....+.+|+..|.+++.+|+++++|+++..     ..|+
T Consensus       476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~  555 (764)
T KOG1063|consen  476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR  555 (764)
T ss_pred             ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence            0 0 0  0                              011112245778899999999999999998754     4599


Q ss_pred             EEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEE
Q psy988          276 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  355 (408)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  355 (408)
                      +|+..+....+.+.+|.-  .|+.++|||||++|++.+.|.++.+|.........        ......+.|..-|.+..
T Consensus       556 lw~t~~W~~~~~L~~HsL--TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e--------~~fa~~k~HtRIIWdcs  625 (764)
T KOG1063|consen  556 LWNTANWLQVQELEGHSL--TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE--------FRFACLKAHTRIIWDCS  625 (764)
T ss_pred             EEeccchhhhheecccce--EEEEEEECCCCcEEEEeecCceEEeeeeecccchh--------hhhccccccceEEEEcc
Confidence            999999888888888766  89999999999999999999999999986542211        11334778999999999


Q ss_pred             ecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          356 FAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       356 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      |+|                +++++||++.|.+|++|.....
T Consensus       626 W~p----------------de~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  626 WSP----------------DEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cCc----------------ccceeEEecCCceEEEEeccCc
Confidence            999                9999999999999999999887

>KOG0274|consensus

Probab=100.00  E-value=1.6e-31  Score=230.81  Aligned_cols=282  Identities=17%  Similarity=0.278  Sum_probs=235.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |...+.+..|+   ..++++++.|++|++|+..++.... ..+.+|.+.|.++++..-+.++++|+.|.++++||..+++
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            56778888886   3479999999999999999888763 3499999999999998778999999999999999999998


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ....+.        +|.+.+.++...  ...+++|+.|.+|++|++.++..+..+.+|...  |.++..+  +.++++|+
T Consensus       283 C~~~l~--------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~--V~~v~~~--~~~lvsgs  348 (537)
T KOG0274|consen  283 CTHSLQ--------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGP--VNCVQLD--EPLLVSGS  348 (537)
T ss_pred             EEEEec--------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccccc--EEEEEec--CCEEEEEe
Confidence            766554        456788888764  557788899999999999999999999886554  7777765  88999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .|+.|++||+.+            .+++..+.+|...|.++.+.+.                                  
T Consensus       349 ~d~~v~VW~~~~------------~~cl~sl~gH~~~V~sl~~~~~----------------------------------  382 (537)
T KOG0274|consen  349 YDGTVKVWDPRT------------GKCLKSLSGHTGRVYSLIVDSE----------------------------------  382 (537)
T ss_pred             cCceEEEEEhhh------------ceeeeeecCCcceEEEEEecCc----------------------------------
Confidence            999999999965            4566778888888888876543                                  


Q ss_pred             CCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND  339 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  339 (408)
                        ..+++|+.|++|++||++++ +++..+.+|..  .+.  .+...+++|++++.|+.|++||..++            +
T Consensus       383 --~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~------------~  444 (537)
T KOG0274|consen  383 --NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVS--SLLLRDNFLVSSSADGTIKLWDAEEG------------E  444 (537)
T ss_pred             --ceEEeeeeccceEeecCCchhhhhhhhcCCcc--ccc--ccccccceeEeccccccEEEeecccC------------c
Confidence              45788999999999999999 89999988765  333  33447889999999999999999988            6


Q ss_pred             cceeeee-eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          340 FWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       340 ~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      ++..+.+ |...|+.+++..                  ..+++++.||++++||+++++....+
T Consensus       445 ~~~~~~~~~~~~v~~l~~~~------------------~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  445 CLRTLEGRHVGGVSALALGK------------------EEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eeeeeccCCcccEEEeecCc------------------ceEEEEecCCeeEEEecccCchhhhh
Confidence            7778887 678898888852                  47888889999999999999876644

>KOG1408|consensus

Probab=100.00  E-value=3.2e-31  Score=222.47  Aligned_cols=365  Identities=14%  Similarity=0.190  Sum_probs=245.8

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEe--CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGS--LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.+||.+..+.-+.+. |..++++++|++ +|+|+|+|-  ....+++|++......  ..+..|.-.|+|++|+|.++
T Consensus        59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS~-~GryvatGEcG~~pa~kVw~la~h~vV--AEfvdHKY~vtcvaFsp~~k  135 (1080)
T KOG1408|consen   59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFSQ-NGRYVATGECGRTPASKVWSLAFHGVV--AEFVDHKYNVTCVAFSPGNK  135 (1080)
T ss_pred             EEEEEcccccchhheecccCcceeEEEEcC-CCcEEEecccCCCccceeeeeccccch--hhhhhccccceeeeecCCCc
Confidence            57889999888888887 999999999999 999999985  5678999999987766  68999999999999999999


Q ss_pred             EEEEEecC--CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc--------
Q psy988           81 FAVVGSYD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--------  150 (408)
Q Consensus        81 ~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------  150 (408)
                      |+++.+..  -.|.+||.+.........         ....|..++|+.++.++++++. ..|++|.++.++        
T Consensus       136 yvvSVGsQHDMIVnv~dWr~N~~~asnk---------iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl  205 (1080)
T KOG1408|consen  136 YVVSVGSQHDMIVNVNDWRVNSSGASNK---------ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPL  205 (1080)
T ss_pred             EEEeeccccceEEEhhhhhhcccccccc---------cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccc
Confidence            99987654  467788776432211111         1235666777777766666654 466666664332        


Q ss_pred             --------------------------------------------------------------------------------
Q psy988          151 --------------------------------------------------------------------------------  150 (408)
Q Consensus       151 --------------------------------------------------------------------------------  150 (408)
                                                                                                      
T Consensus       206 ~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlF  285 (1080)
T KOG1408|consen  206 PGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLF  285 (1080)
T ss_pred             cchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeec
Confidence                                                                                            


Q ss_pred             ------cceeecCc----------------------cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeeccc
Q psy988          151 ------LSCKYKGY----------------------VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR  202 (408)
Q Consensus       151 ------~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  202 (408)
                            ...++...                      .......++.|++....|.+...|..+++||++.....-     
T Consensus       286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg-----  360 (1080)
T KOG1408|consen  286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG-----  360 (1080)
T ss_pred             CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccccc-----
Confidence                  11000000                      000112234555555566666666666666665422110     


Q ss_pred             CCCccccccccccceEEEEEEeC---------------------CcceeeeecCC-----------------------CC
Q psy988          203 DRNDFWEGIKAHNAVVTCAVFAP---------------------CPELIIAQMEP-----------------------DK  238 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~~~~~---------------------~~~~~~~~~~~-----------------------~~  238 (408)
                          ....+..|...|+.+.--|                     |+..-+.....                       ..
T Consensus       361 ----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~  436 (1080)
T KOG1408|consen  361 ----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST  436 (1080)
T ss_pred             ----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence                0111223333333333222                     11111110000                       00


Q ss_pred             -----------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC---
Q psy988          239 -----------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH---  304 (408)
Q Consensus       239 -----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~---  304 (408)
                                 ........-.....+.+++++|+|++|++|..-|.++|||+.+.+....+..|..  .|.++.||.   
T Consensus       437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes--EilcLeyS~p~~  514 (1080)
T KOG1408|consen  437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES--EILCLEYSFPVL  514 (1080)
T ss_pred             hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc--eeEEEeecCchh
Confidence                       0000000112235689999999999999999999999999999988888888765  788999986   


Q ss_pred             CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCc--hhhhhccCCC------------
Q psy988          305 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP--ELIIAQMEPD------------  370 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~------------  370 (408)
                      ..++||+++.|..|++||+....           .+++++.+|...|+++.|...|  ..|++...+.            
T Consensus       515 ~~kLLASasrdRlIHV~Dv~rny-----------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~  583 (1080)
T KOG1408|consen  515 TNKLLASASRDRLIHVYDVKRNY-----------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS  583 (1080)
T ss_pred             hhHhhhhccCCceEEEEeccccc-----------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence            45789999999999999998764           5778899999999999998765  3333333322            


Q ss_pred             -------------------CCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          371 -------------------KSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       371 -------------------~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                                         +..|..+++++++.|..|+||++.++++...+.
T Consensus       584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK  635 (1080)
T KOG1408|consen  584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK  635 (1080)
T ss_pred             ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence                               556778899999999999999999998776653

>KOG0278|consensus

Probab=100.00  E-value=2.4e-32  Score=200.64  Aligned_cols=258  Identities=16%  Similarity=0.217  Sum_probs=210.1

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      .=.+-+-++|.-+-++. |++.|++..++. +....|+++.|-+-++||.-++..+  .. ..|..-|.+++|+.|.++|
T Consensus        40 ~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdel--hs-f~hkhivk~~af~~ds~~l  115 (334)
T KOG0278|consen   40 KPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDEL--HS-FEHKHIVKAVAFSQDSNYL  115 (334)
T ss_pred             CchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhh--hh-hhhhheeeeEEecccchhh
Confidence            33344456677777886 999999999998 8888999999999999999998876  23 3588899999999999999


Q ss_pred             EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS  162 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  162 (408)
                      ++|+.+..++|||++..+.       ......+|.+.|..+.|....+.+++++.|++||+||.+++..++.+....+  
T Consensus       116 ltgg~ekllrvfdln~p~A-------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~--  186 (334)
T KOG0278|consen  116 LTGGQEKLLRVFDLNRPKA-------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP--  186 (334)
T ss_pred             hccchHHHhhhhhccCCCC-------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC--
Confidence            9999999999999987543       2223356778999999999999999999999999999999999888766443  


Q ss_pred             cceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          163 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                       +.++.++++|++|.++ ..+.|.+||..+-...            +.+                               
T Consensus       187 -VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l------------Ks~-------------------------------  221 (334)
T KOG0278|consen  187 -VTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL------------KSY-------------------------------  221 (334)
T ss_pred             -CcceeeccCCCEEEEe-cCceeEEeccccccce------------eec-------------------------------
Confidence             7789999999877666 4568999998542111            111                               


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE-eeccceeceeEEEEcCCCCEEEEecCCceEEEe
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW  321 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  321 (408)
                           .....|.+...+|+...+++|++|..++.||..+++.+..+ ++|.+  +|.++.|+|||..-|+|++||+|+||
T Consensus       222 -----k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g--pVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  222 -----KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG--PVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             -----cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC--ceEEEEECCCCceeeccCCCceEEEE
Confidence                 12234555666777778899999999999999999988886 66544  89999999999999999999999999


Q ss_pred             ecccc
Q psy988          322 KTHHD  326 (408)
Q Consensus       322 ~~~~~  326 (408)
                      ....+
T Consensus       295 Qt~~~  299 (334)
T KOG0278|consen  295 QTTPG  299 (334)
T ss_pred             EecCC
Confidence            98765

>KOG0299|consensus

Probab=100.00  E-value=1.3e-30  Score=207.52  Aligned_cols=269  Identities=17%  Similarity=0.294  Sum_probs=215.8

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee---------------eeee-cCCceeeEEEEEecCCCEEEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV---------------WNEV-EGQTKLITAANFCENGKFAVV   84 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~---------------~~~~-~~~~~~v~~~~~~~~~~~l~~   84 (408)
                      |.-+|.+|+++| ++.+.++++.||+|.=|++.+++...               ...- ..|...+.+++.++||+||++
T Consensus       141 H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  141 HQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             ccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            999999999999 99999999999999999998766320               0011 378889999999999999999


Q ss_pred             EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccc
Q psy988           85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ  164 (408)
Q Consensus        85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  164 (408)
                      |+.|..|.||+.++.+....        ..+|.+.|.+++|-.....|++++.|+.|++|+++....+.++-+|...  +
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~--------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--v  289 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKV--------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG--V  289 (479)
T ss_pred             cCCCceEEEecCcccchhhc--------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--e
Confidence            99999999999998765443        3467789999999998899999999999999999998888888887765  6


Q ss_pred             eEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      ..+....-++.+-+|+.|+++++|++.....             ..+.++.+.+-|++|-.                   
T Consensus       290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-------------lifrg~~~sidcv~~In-------------------  337 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQ-------------LIFRGGEGSIDCVAFIN-------------------  337 (479)
T ss_pred             eeechhcccceEEeccccceeEEEeccccce-------------eeeeCCCCCeeeEEEec-------------------
Confidence            6777777777788888999999999843211             22344455555555543                   


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc----------ceeceeEEEEcCCCCEEEEecC
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV----------NVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                       ...+++|+.+|.|.+|++...+++.+.....          ++..|++++..|...++|+|+.
T Consensus       338 -----------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~  400 (479)
T KOG0299|consen  338 -----------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW  400 (479)
T ss_pred             -----------------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC
Confidence                             3557899999999999999988887765221          1237889999999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      +|.|++|.+..+...+        .++..+. -.+-|++++|++
T Consensus       401 ~G~vrLW~i~~g~r~i--------~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  401 SGCVRLWKIEDGLRAI--------NLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             CCceEEEEecCCcccc--------ceeeecc-cccEEEEEEEcc
Confidence            9999999999874332        2344444 567899999999

>KOG0288|consensus

Probab=100.00  E-value=1.8e-32  Score=215.07  Aligned_cols=262  Identities=17%  Similarity=0.279  Sum_probs=214.1

Q ss_pred             CCceEEEEeccCCe--eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKE--CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~--~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      +|..|++|+....+  .+.++. -.++|+++.|.+ ++..+++++.|+.+++|++...+..  .++.+|...|+++.|..
T Consensus       195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~--~TLsGHtdkVt~ak~~~  271 (459)
T KOG0288|consen  195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLR--HTLSGHTDKVTAAKFKL  271 (459)
T ss_pred             hhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhh--hhhcccccceeeehhhc
Confidence            47889999998776  444443 678899999999 8999999999999999999998877  79999999999999988


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ....+++|+.|.+|++||+...........         ...+..++..  ...+++|-.|+.|++||.++..+......
T Consensus       272 ~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~---------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  272 SHSRVVSGSADRTIKLWDLQKAYCSKTVLP---------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             cccceeeccccchhhhhhhhhhheeccccc---------cccccceEec--ceeeeecccccceEEEeccCCceeeEeec
Confidence            777799999999999999988654433321         1245556554  55678888899999999999988877766


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      +.   .+.++..++++..+.+.+.|.++.+.|+++....                        ..|+..+-         
T Consensus       341 gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~------------------------~~~sA~g~---------  384 (459)
T KOG0288|consen  341 GG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR------------------------QTFSAEGF---------  384 (459)
T ss_pred             Cc---ceeeEeeccCCeEEeeecCCCceeeeecccccEE------------------------EEeecccc---------
Confidence            54   4888999999999999999999999999763211                        11222111         


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                ......+.+.|||++.|+++|+.||.|+||++.++++...+........|++++|+|.|..|++++.++.
T Consensus       385 ----------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  385 ----------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             ----------ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence                      1123367788999999999999999999999999999999887766557999999999999999999999


Q ss_pred             EEEee
Q psy988          318 IYIWK  322 (408)
Q Consensus       318 i~iw~  322 (408)
                      +.+|.
T Consensus       455 v~lW~  459 (459)
T KOG0288|consen  455 VTLWT  459 (459)
T ss_pred             eEecC
Confidence            99993

>KOG2048|consensus

Probab=100.00  E-value=5.3e-29  Score=207.65  Aligned_cols=354  Identities=14%  Similarity=0.148  Sum_probs=255.9

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ++|+|.-||+.+++++..+. ..+.|++++.+| .+..++.|+.||.+..++...++......+...++.|.+++|+|++
T Consensus        88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~  166 (691)
T KOG2048|consen   88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG  166 (691)
T ss_pred             CCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence            47999999999999999998 889999999999 8899999999998899999888888777888888999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ..+++|+.||.|++||...+...................-|.++.|.. ...+++|...|.|.+||...+.+++.+..|.
T Consensus       167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~  245 (691)
T KOG2048|consen  167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHD  245 (691)
T ss_pred             cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhh
Confidence            999999999999999999887665332222222222334577788774 5589999999999999999999999888877


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee------
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------  233 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------  233 (408)
                      ..  +.+++.++++.++++++.|+.|..|...+........        .....|...+.+++..++  .++.+      
T Consensus       246 ad--Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~--------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l  313 (691)
T KOG2048|consen  246 AD--VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN--------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL  313 (691)
T ss_pred             cc--eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee--------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence            55  8899999999999999999999999887654322111        122344445555554443  11100      


Q ss_pred             ------------------------------------cCCC----------------CCCCceeeecCCCceeeeeccCCC
Q psy988          234 ------------------------------------MEPD----------------KSESTGYVLNATGRKISGIEPMPG  261 (408)
Q Consensus       234 ------------------------------------~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~  261 (408)
                                                          +...                .......+.......|.+.+.+|+
T Consensus       314 ~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPd  393 (691)
T KOG2048|consen  314 AICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPD  393 (691)
T ss_pred             EEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCC
Confidence                                                0000                000111122234467888999999


Q ss_pred             CCeEEEecCCCeEEEEEcCC--------------------------------------------------CeeeeEEeec
Q psy988          262 EDKILVTSNDSRIRLYDLRD--------------------------------------------------LNLSCKYKGY  291 (408)
Q Consensus       262 ~~~l~~~~~d~~i~i~d~~~--------------------------------------------------~~~~~~~~~~  291 (408)
                      |++|+.+.-. ..++|.+..                                                  ++.+..+...
T Consensus       394 g~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~  472 (691)
T KOG2048|consen  394 GNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ  472 (691)
T ss_pred             CCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc
Confidence            9999987621 233333321                                                  0011111111


Q ss_pred             cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCC
Q psy988          292 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  371 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  371 (408)
                      .....|..+..||+|++||+.+.+|.|.+|++++....          ++.  ..-...|+.++|+|.            
T Consensus       473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~----------~l~--~rln~~vTa~~~~~~------------  528 (691)
T KOG2048|consen  473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESH----------LLK--VRLNIDVTAAAFSPF------------  528 (691)
T ss_pred             cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceee----------cch--hccCcceeeeecccc------------
Confidence            22346788999999999999999999999999986321          111  123467999999974            


Q ss_pred             CCCcccEEEEEecCCeEEEEeCCCC
Q psy988          372 SESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       372 ~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                         +-+.|+.+..|+.|.-||++..
T Consensus       529 ---~~~~lvvats~nQv~efdi~~~  550 (691)
T KOG2048|consen  529 ---VRNRLVVATSNNQVFEFDIEAR  550 (691)
T ss_pred             ---ccCcEEEEecCCeEEEEecchh
Confidence               6678888999999999999543

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8e-30  Score=220.13  Aligned_cols=232  Identities=15%  Similarity=0.222  Sum_probs=174.5

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeEEEEEecCC-CEEEEEecCCEEE
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLITAANFCENG-KFAVVGSYDGRCI   92 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~   92 (408)
                      .+|.+.|++++|+|.++++|++|+.|++|++||+.++..     .....+.+|...|.+++|+|++ ++|++++.|+.|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            349999999999996678999999999999999976532     1235788999999999999985 6899999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +||+++++....+        ..|...|.+++|+|++..|++++.|+.|++||+++++.+..+..|.... ...+.|.++
T Consensus       152 IWDl~tg~~~~~l--------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~-~~~~~w~~~  222 (493)
T PTZ00421        152 VWDVERGKAVEVI--------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-SQRCLWAKR  222 (493)
T ss_pred             EEECCCCeEEEEE--------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc-ceEEEEcCC
Confidence            9999987643322        2456789999999999999999999999999999998888877765432 335678888


Q ss_pred             CCEEEEee----cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC
Q psy988          173 GKYIVSGS----ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA  248 (408)
Q Consensus       173 ~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (408)
                      +..+++++    .|+.|++||+++.....           .....+                                  
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-----------~~~~~d----------------------------------  257 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASPY-----------STVDLD----------------------------------  257 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCce-----------eEeccC----------------------------------
Confidence            88877654    47899999986432111           000000                                  


Q ss_pred             CCceeeeeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988          249 TGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                      ....+....|++++++|++++ .|+.|++||+.++++....... ...+...++|.|.
T Consensus       258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk  314 (493)
T PTZ00421        258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK  314 (493)
T ss_pred             CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence            111223345667777777776 5999999999998876665432 2234567777774

>KOG1332|consensus

Probab=100.00  E-value=2.7e-31  Score=194.41  Aligned_cols=257  Identities=16%  Similarity=0.249  Sum_probs=198.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-eeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEecc
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-AVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~   97 (408)
                      |.+.|..+...- -|++|||++.|++|+|+.++.... .....|.+|.++|..++|..  -|.+||+++.||.|.||.-+
T Consensus        10 H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen   10 HEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            999999988887 899999999999999999987654 55689999999999999975  69999999999999999988


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCc-ccceeecCccccccceEEEEecC--
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHD--  172 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~--  172 (408)
                      +++..      ....+..|...|++++|.|.  |-.|++++.||.|.+.+.+.. .-........+...+.+++|.|.  
T Consensus        89 ~g~w~------k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   89 NGRWT------KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             CCchh------hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            87532      22334567789999999996  457888899999999998764 22222222233455888999885  


Q ss_pred             -C-----------CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          173 -G-----------KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       173 -~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                       |           +.|++|+.|..|+||+...+.          -..-..+.+|...|+.++|.|.-...          
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----------w~~e~~l~~H~dwVRDVAwaP~~gl~----------  222 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----------WKLERTLEGHKDWVRDVAWAPSVGLP----------  222 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcc----------hhhhhhhhhcchhhhhhhhccccCCC----------
Confidence             4           569999999999999987642          12224578899999999998864332          


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                                           ..+|++++.||++.||..+.. +.-.....+.-+..+..+.||+.|+.|++++.|+.|.
T Consensus       223 ---------------------~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  223 ---------------------KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             ---------------------ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence                                 346899999999999987632 1111111122334688999999999999999999999


Q ss_pred             Eeeccc
Q psy988          320 IWKTHH  325 (408)
Q Consensus       320 iw~~~~  325 (408)
                      +|.-+.
T Consensus       282 lwke~~  287 (299)
T KOG1332|consen  282 LWKENV  287 (299)
T ss_pred             EEEeCC
Confidence            998654

>KOG0294|consensus

Probab=100.00  E-value=4.6e-30  Score=194.89  Aligned_cols=261  Identities=19%  Similarity=0.305  Sum_probs=200.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC--EEEEEecCCEEEEEeccC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK--FAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~   98 (408)
                      |.+.|++++.   ++.++|+||.|-+|+|||+.+....  ..+..|.+.|+++.|.++-.  .|++|+.||.|.+|+...
T Consensus        42 H~~sitavAV---s~~~~aSGssDetI~IYDm~k~~ql--g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   42 HAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQL--GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccceeEEEe---cceeEeccCCCCcEEEEeccchhhh--cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence            9999999999   5789999999999999999987766  68888999999999998765  899999999999999988


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      ......+        .+|.+.|+.++.+|.++.-++.+.|+.+++||+-+|+.-..+.....   ...+.|+|.|.+++.
T Consensus       117 W~~~~sl--------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  117 WELLKSL--------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVV  185 (362)
T ss_pred             eEEeeee--------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEE
Confidence            7554433        35667899999999999999999999999999998886655544333   223889999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      +..++ |-+|.+.+..            ....+. .+..+.++.|.                                  
T Consensus       186 ~~~~~-i~i~q~d~A~------------v~~~i~-~~~r~l~~~~l----------------------------------  217 (362)
T KOG0294|consen  186 SGRNK-IDIYQLDNAS------------VFREIE-NPKRILCATFL----------------------------------  217 (362)
T ss_pred             EeccE-EEEEecccHh------------Hhhhhh-ccccceeeeec----------------------------------
Confidence            88764 8889875421            111111 11223333332                                  


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEE--EcCCCCEEEEecCCceEEEeeccccCccccccccC
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS--FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD  336 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  336 (408)
                        ++..+++|..|+.|.+||..+..+...+.+|..  .|-++.  -.|++.+|++++.||.|++||++....       .
T Consensus       218 --~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k-------~  286 (362)
T KOG0294|consen  218 --DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK-------K  286 (362)
T ss_pred             --CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEecCCceEEEEeccCceEEEEEcccccc-------C
Confidence              456788999999999999999999999999877  555555  356889999999999999999987622       1


Q ss_pred             ccccceeeeeeccceEEEEec
Q psy988          337 RNDFWEGIKAHNAVVTCAVFA  357 (408)
Q Consensus       337 ~~~~~~~~~~h~~~v~~~~~~  357 (408)
                      ++.++..+.. ..+++|+...
T Consensus       287 ~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  287 RPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             CcceeEEeec-CCccceeeeh
Confidence            2234433332 5566776654

>KOG1036|consensus

Probab=100.00  E-value=8.7e-30  Score=192.86  Aligned_cols=272  Identities=17%  Similarity=0.238  Sum_probs=206.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      -.+.|.+|.|+| .++.|+.++.||++++|++......   ..-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus        12 P~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~---~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLK---LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhh---hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence            468899999999 7778888889999999999887544   3445888999999977 4568999999999999999876


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ....         ..|..++.|+.+.+....+++|++|+.|++||.+.......+....   .|.+  .+-.++.|++|+
T Consensus        87 ~~~i---------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~--~~v~g~~LvVg~  152 (323)
T KOG1036|consen   87 EDQI---------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYC--MDVSGNRLVVGT  152 (323)
T ss_pred             ceee---------ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEE--EeccCCEEEEee
Confidence            4332         2466799999999999999999999999999999744444433322   3444  445688899999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .+..+.+||+++....++          ..-..-+..++++++-|                                   
T Consensus       153 ~~r~v~iyDLRn~~~~~q----------~reS~lkyqtR~v~~~p-----------------------------------  187 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEPFQ----------RRESSLKYQTRCVALVP-----------------------------------  187 (323)
T ss_pred             cCceEEEEEcccccchhh----------hccccceeEEEEEEEec-----------------------------------
Confidence            999999999986433221          11112233455555555                                   


Q ss_pred             CCCeEEEecCCCeEEEEEcCCC----eeeeEEeeccc-------eeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDL----NLSCKYKGYVN-------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                      ++.-+++++-||.|.+=.++..    +....|+.|..       .-+|.+++|+|-...||+|+.||.|.+||+...   
T Consensus       188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---  264 (323)
T KOG1036|consen  188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---  264 (323)
T ss_pred             CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---
Confidence            4444677899999988766654    23334444432       246889999999999999999999999999876   


Q ss_pred             ccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec
Q psy988          330 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF  384 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  384 (408)
                               +.+..+......|.+++|+.                ||..||.|+.
T Consensus       265 ---------Krl~q~~~~~~SI~slsfs~----------------dG~~LAia~s  294 (323)
T KOG1036|consen  265 ---------KRLKQLAKYETSISSLSFSM----------------DGSLLAIASS  294 (323)
T ss_pred             ---------hhhhhccCCCCceEEEEecc----------------CCCeEEEEec
Confidence                     56666766778899999999                8888888864

>KOG0973|consensus

Probab=100.00  E-value=8.3e-31  Score=229.88  Aligned_cols=284  Identities=18%  Similarity=0.257  Sum_probs=213.0

Q ss_pred             CCceEEEEeccC------------CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC----------C--
Q psy988            1 MDKTVRLWHISR------------KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD----------K--   55 (408)
Q Consensus         1 ~Dg~i~vwd~~~------------~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~----------~--   55 (408)
                      +|+.++||+.+.            .+.+.+.. |.+.|+|+.|+| ||++||+|+.|+.|.||+...          +  
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~  113 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGA  113 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccc
Confidence            478889998742            12233333 999999999999 999999999999999999873          0  


Q ss_pred             ----CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe
Q psy988           56 ----KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK  131 (408)
Q Consensus        56 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  131 (408)
                          .......+.+|...|..++|+|++.+|++++.|++|.+|+..+.+....+        .+|.+.|..+.|.|-|++
T Consensus       114 ~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl--------~~H~s~VKGvs~DP~Gky  185 (942)
T KOG0973|consen  114 KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL--------RGHQSLVKGVSWDPIGKY  185 (942)
T ss_pred             cccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee--------ecccccccceEECCccCe
Confidence                01234578899999999999999999999999999999999987554433        356789999999999999


Q ss_pred             EEEeeCCCeEEEEEccCcccceeecCccc----cccceEEEEecCCCEEEEeec-C---ceEEEeeeccceeeeeecccC
Q psy988          132 ILVTSNDSRIRLYDLRDLNLSCKYKGYVN----VSSQIKASFSHDGKYIVSGSE-N---QCIYIWKTHHDYAKFSSVRRD  203 (408)
Q Consensus       132 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~  203 (408)
                      |++-+.|++|++|+..+-...+.+..+..    ......+.|+|||++|++... +   ..+.|.+-            .
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR------------~  253 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER------------G  253 (942)
T ss_pred             eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec------------C
Confidence            99999999999999877655555544433    233567899999999998643 1   24455443            2


Q ss_pred             CCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC--CeEEEecCCCeEEEEEcCC
Q psy988          204 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE--DKILVTSNDSRIRLYDLRD  281 (408)
Q Consensus       204 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~  281 (408)
                      ....-..+.+|..++.++.|+|.--.                  ....  .+..-.++-  ..+|+|+.|++|.||....
T Consensus       254 tWk~~~~LvGH~~p~evvrFnP~lfe------------------~~~~--ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  254 TWKVDKDLVGHSAPVEVVRFNPKLFE------------------RNNK--NGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             CceeeeeeecCCCceEEEEeChHHhc------------------cccc--cCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            23334568899999999999983100                  0000  000000000  2468899999999999877


Q ss_pred             CeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          282 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       282 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .+++....... ...|.+++|+|||..|+++|.||+|.+..++..
T Consensus       314 ~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  314 PRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            77765544332 347899999999999999999999999998764

>KOG2106|consensus

Probab=100.00  E-value=9.3e-29  Score=199.40  Aligned_cols=345  Identities=17%  Similarity=0.284  Sum_probs=246.8

Q ss_pred             ceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-c-CCceeeEEEEEecCC
Q psy988            3 KTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-E-GQTKLITAANFCENG   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~   79 (408)
                      ..+.|||.+.+....... -.+.|....|+|.+.+++++++. |.+.+|+.+++.....+-+ . .....|.|++|.++|
T Consensus       180 h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng  258 (626)
T KOG2106|consen  180 HMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG  258 (626)
T ss_pred             cccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC
Confidence            456789998888777776 67788999999988888888886 8999999998876532222 2 223679999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec---
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK---  156 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---  156 (408)
                      + +++|..+|.|.||+..+.+......        .|.+.|.+++...+|. |++|+.|..|..||-.- +.++..+   
T Consensus       259 d-viTgDS~G~i~Iw~~~~~~~~k~~~--------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~elPe  327 (626)
T KOG2106|consen  259 D-VITGDSGGNILIWSKGTNRISKQVH--------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRETELPE  327 (626)
T ss_pred             C-EEeecCCceEEEEeCCCceEEeEee--------ecCCceEEEEEecCcc-EeecCccceEEeccccc-cccccccCch
Confidence            7 7899999999999997765443332        5678999999998775 55599999999998321 1111100   


Q ss_pred             ----------Cc--------------------------cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeec
Q psy988          157 ----------GY--------------------------VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  200 (408)
Q Consensus       157 ----------~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  200 (408)
                                +.                          .+......++.+|+.+.+++++.|+.+++|+-  .+....  
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k~~wt--  403 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HKLEWT--  403 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--CceeEE--
Confidence                      00                          01112345677888899999999999999992  221111  


Q ss_pred             ccCCCccccccccccceEEEEEEeCCcceeeeecCCCC------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                                 +.-..++.|+.|+|.| .++.+.....      .......+...+.+++.+.|+|+|.+||+|+.|+.|
T Consensus       404 -----------~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  404 -----------KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             -----------EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeE
Confidence                       2235678899999999 6665533322      222233333448899999999999999999999999


Q ss_pred             EEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccccc------------------
Q psy988          275 RLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR------------------  335 (408)
Q Consensus       275 ~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------------------  335 (408)
                      +||.+... ........+.. .+++.+.||+|+++|.+-+.|-.|..|.... ......++.                  
T Consensus       472 yiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~ts~kDvkW~t~~c~lGF~v~g~s  549 (626)
T KOG2106|consen  472 YIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQITSVKDVKWATYTCTLGFEVFGGS  549 (626)
T ss_pred             EEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEEcccc-CcccceecceeeeeeEEEEEEEEeccc
Confidence            99998754 44444444444 7899999999999999999999999994332 221111100                  


Q ss_pred             ----------------------------------CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          336 ----------------------------------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       336 ----------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                                                        ........+.+|.+.|++++|..                +...|++
T Consensus       550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~----------------~d~~li~  613 (626)
T KOG2106|consen  550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC----------------KDSHLIS  613 (626)
T ss_pred             CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee----------------CCceEEe
Confidence                                              01123345667888899999988                6667777


Q ss_pred             EecCCeEEEEeC
Q psy988          382 ADFNGVIRVFLN  393 (408)
Q Consensus       382 ~~~dg~v~iw~~  393 (408)
                      .+.|.+|..|++
T Consensus       614 tg~D~Si~qW~l  625 (626)
T KOG2106|consen  614 TGKDTSIMQWRL  625 (626)
T ss_pred             cCCCceEEEEEe
Confidence            779999999986

>KOG0301|consensus

Probab=100.00  E-value=5.6e-30  Score=213.95  Aligned_cols=284  Identities=21%  Similarity=0.295  Sum_probs=231.9

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE-EEEec-CCCEEEEEecCCE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA-ANFCE-NGKFAVVGSYDGR   90 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~   90 (408)
                      +..+.+. |...|..+++.+  +-.++++|.||++++|+-..++......+.+|.+.|.. +++-+ ++-.+++|+.|.+
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            4556665 999999999885  55799999999999999988887766678888887777 78775 4556999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      +.+|...+......        ..+|...|.++....++. +++|+.|.++++|-..  ++...+.+|...  |.++..-
T Consensus        83 i~v~~~~~~~P~~~--------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~as--VWAv~~l  149 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYT--------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTAS--VWAVASL  149 (745)
T ss_pred             EEEEecCCCCchhh--------hhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchh--eeeeeec
Confidence            99999987654333        346778999999877776 9999999999999764  455567777655  6688888


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      |++ .+++|+.|.+|++|.-              ...++++.+|...|+.+++-+++.                      
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--------------~~~l~tf~gHtD~VRgL~vl~~~~----------------------  192 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--------------GTLLKTFSGHTDCVRGLAVLDDSH----------------------  192 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--------------CchhhhhccchhheeeeEEecCCC----------------------
Confidence            887 8999999999999975              355678889999999988877543                      


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                                    |++++.||.|++|++ +++.+..+.+|..  .+.+++..+++..++++++|++++||+..      
T Consensus       193 --------------flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~~~~~~Ivs~gEDrtlriW~~~------  249 (745)
T KOG0301|consen  193 --------------FLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMALSDGLIVSTGEDRTLRIWKKD------  249 (745)
T ss_pred             --------------eEeecCCceEEEEec-cCceeeeeeccce--EEEEEEecCCCCeEEEecCCceEEEeecC------
Confidence                          678999999999999 6888888888876  77888888899999999999999999986      


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                              ++.+.+.-....|+++.+-+                +| -|++|+.||.||||.....+
T Consensus       250 --------e~~q~I~lPttsiWsa~~L~----------------Ng-DIvvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  250 --------ECVQVITLPTTSIWSAKVLL----------------NG-DIVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             --------ceEEEEecCccceEEEEEee----------------CC-CEEEeccCceEEEEEecccc
Confidence                    35566665556899999987                56 47788889999999887443

>KOG0640|consensus

Probab=99.98  E-value=1.9e-31  Score=202.08  Aligned_cols=271  Identities=16%  Similarity=0.246  Sum_probs=207.3

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE----------EEEEeeccccccCCCCeEEEeeCCCCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT----------QIHVRSTRGKNATGRKISGIEPMPGED  130 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~  130 (408)
                      ..+..|..++.+.+|++||.++++|+.|..|+|.|++..-...          ....+..+....|..+|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            4577899999999999999999999999999999987221100          001112223345778999999999999


Q ss_pred             eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988          131 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       131 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      .|++++.|++|++||.......+.++-......+.++.|+|.|.+|++|.....+++||+++-+.-.             
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv-------------  252 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV-------------  252 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee-------------
Confidence            9999999999999999876666666655566668999999999999999999999999997632211             


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                                 .-+|+                    ..|...|+++.+++.++..++++.||.|++||--+++++.++..
T Consensus       253 -----------sanPd--------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~  301 (430)
T KOG0640|consen  253 -----------SANPD--------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN  301 (430)
T ss_pred             -----------ecCcc--------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence                       11122                    14667788888888888899999999999999999999999886


Q ss_pred             ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeec-----cceEEEEecCCchhhhh
Q psy988          291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN-----AVVTCAVFAPCPELIIA  365 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~~  365 (408)
                      ..+...|.+..|..+|+|+++.+.|..+++|++.++            +++....|-.     .--+...|+.       
T Consensus       302 AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~------------R~l~~YtGAg~tgrq~~rtqAvFNh-------  362 (430)
T KOG0640|consen  302 AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG------------RMLKEYTGAGTTGRQKHRTQAVFNH-------  362 (430)
T ss_pred             hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC------------ceEEEEecCCcccchhhhhhhhhcC-------
Confidence            666778999999999999999999999999999998            4555554331     1124456666       


Q ss_pred             ccCCCCCCCcccEEEEEec-CCeEEEEeCCCCCCccccc
Q psy988          366 QMEPDKSESTGYVLVSADF-NGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       366 ~~~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~  403 (408)
                               ...+++.-.. .+.+.-||.++......++
T Consensus       363 ---------tEdyVl~pDEas~slcsWdaRtadr~~l~s  392 (430)
T KOG0640|consen  363 ---------TEDYVLFPDEASNSLCSWDARTADRVALLS  392 (430)
T ss_pred             ---------ccceEEccccccCceeeccccchhhhhhcc
Confidence                     4555554433 4667778877766555444

>KOG2055|consensus

Probab=99.98  E-value=2.9e-30  Score=205.70  Aligned_cols=291  Identities=17%  Similarity=0.239  Sum_probs=223.2

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCe
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .++|+++.|+| ...+|++|+.||+++||.++...-..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            47899999999 99999999999999999998766555566666778999999999999 89999999999999998876


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ......   ..+..  ...+.....+|++++|+..+..|.|.+....+++.+..++...   .+..++|+.+++.|++.+
T Consensus       292 ~~k~~~---~~g~e--~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  292 VTKLKP---PYGVE--EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLASG  363 (514)
T ss_pred             cccccC---CCCcc--cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEEc
Confidence            543222   11111  2357778889999999999999999999999999888776543   367799999999999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .+|.|++||++.....            ..+..                                  ...-.-++++.++
T Consensus       364 ~~GeV~v~nl~~~~~~------------~rf~D----------------------------------~G~v~gts~~~S~  397 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCL------------HRFVD----------------------------------DGSVHGTSLCISL  397 (514)
T ss_pred             CCceEEEEecCCcceE------------EEEee----------------------------------cCccceeeeeecC
Confidence            9999999999753211            11110                                  1111235677788


Q ss_pred             CCCeEEEecCCCeEEEEEcCC------CeeeeEEeeccceeceeEEEEcCCCCEEEEecC--CceEEEeeccccCccccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRD------LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~  332 (408)
                      ++.+||+|+..|.|.|||.++      .+++..+..-  ...|+++.|+||++.||.+|.  +..+++-.+.+.. .++.
T Consensus       398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsN  474 (514)
T KOG2055|consen  398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-VFSN  474 (514)
T ss_pred             CCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeeeeCcchhhhhhhhhccccceEEEecccee-eecc
Confidence            899999999999999999654      2344444332  347889999999999998775  5688888887531 1111


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      .+..        ...-+.|+|++|+|                .|.+||.|..+|.|.+|.+.
T Consensus       475 fP~~--------n~~vg~vtc~aFSP----------------~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  475 FPTS--------NTKVGHVTCMAFSP----------------NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCC--------CCcccceEEEEecC----------------CCceEEeecCCCceeeEeec
Confidence            1111        11235689999999                89999999999999999875

>KOG1446|consensus

Probab=99.98  E-value=2.8e-29  Score=190.96  Aligned_cols=255  Identities=18%  Similarity=0.190  Sum_probs=201.3

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--C
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--D  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d  138 (408)
                      +.+......|.++.|+++|.++++++.|.++++||..+++....+...        ...+..++|......++.++.  |
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--------KYGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--------cccccEEEEecCCceEEEccCCCC
Confidence            345556778999999999999999999999999999998876665532        236777888877777777766  8


Q ss_pred             CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988          139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  218 (408)
Q Consensus       139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (408)
                      .+|+..++.+.+.++-+.+|...  |.+++.+|-+..+++++.|++|++||++......-            +       
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~--V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------------l-------  138 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKR--VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------------L-------  138 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCce--EEEEEecCCCCeEEecccCCeEEeeEecCCCCceE------------E-------
Confidence            89999999999999999999876  88999999999999999999999999975321110            0       


Q ss_pred             EEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--eeeeEEeec-ccee
Q psy988          219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--NLSCKYKGY-VNVS  295 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~-~~~~  295 (408)
                                                    +...-..++|.|.|-++|++.....|++||++..  .+..++.-. ....
T Consensus       139 ------------------------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~  188 (311)
T KOG1446|consen  139 ------------------------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA  188 (311)
T ss_pred             ------------------------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc
Confidence                                          0111223567778888898888889999999874  344444432 2334


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccce---EEEEecCCchhhhhccCCCCC
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV---TCAVFAPCPELIIAQMEPDKS  372 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~~~~  372 (408)
                      ....+.|||||++|+.+...+.+++.|.-.|            .....+.++...-   -+..|+|              
T Consensus       189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------------~~~~tfs~~~~~~~~~~~a~ftP--------------  242 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDG------------TVKSTFSGYPNAGNLPLSATFTP--------------  242 (311)
T ss_pred             ceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------------cEeeeEeeccCCCCcceeEEECC--------------
Confidence            6778999999999999999999999999887            3445555554322   5788999              


Q ss_pred             CCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          373 ESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       373 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                        |++++++|+.||+|.+|+++++.+...+
T Consensus       243 --ds~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  243 --DSKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             --CCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence              9999999999999999999998876654

>KOG4283|consensus

Probab=99.98  E-value=3.6e-30  Score=193.79  Aligned_cols=300  Identities=18%  Similarity=0.274  Sum_probs=223.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-------------eeeeeecCCceeeEEEEEec-CCCEEEEEe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-------------AVWNEVEGQTKLITAANFCE-NGKFAVVGS   86 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   86 (408)
                      |.+.|+++...+..|+|+++|+.||.|.+||++....             +....-.+|.-.|..+.|-| |...+.+++
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            9999999999998999999999999999999976331             01123356888999999998 566788999


Q ss_pred             cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeCCCeEEEEEccCcccceeecCcccccc
Q psy988           87 YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS  163 (408)
Q Consensus        87 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  163 (408)
                      .|.++++||..+.+....+...         +.|..-+++|-   ...+++|..+-.|++.|+.+|.....+.+|...  
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~me---------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~--  190 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFKME---------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG--  190 (397)
T ss_pred             ccceEEEeecccceeeEEeecC---------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc--
Confidence            9999999999998766555432         36777777773   346677788899999999999999999998866  


Q ss_pred             ceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          164 QIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       164 ~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                      +.++.|+|...+ |++|+.||.|++||++....           ++..+..|+.                     .....
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-----------cf~~lD~hn~---------------------k~~p~  238 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-----------CFRVLDQHNT---------------------KRPPI  238 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccc-----------eeEEeecccC---------------------ccCcc
Confidence            889999998877 67899999999999974311           1222222221                     00111


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-----ceeceeEEEEcCCCCEEEEecCCce
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----NVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                      ...-..|.+.+.+++|+.++.++++++.|..+++|+..+|+....-.+..     ....+. +. +-+...++---.++.
T Consensus       239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~  316 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGS  316 (397)
T ss_pred             ccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCe
Confidence            11233677888899999999999999999999999998876422211110     000111 22 223333333344588


Q ss_pred             EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      +.++.+-++            ..+..+..|...|.+.++.|                +=+.+.++..|+.|..|-.
T Consensus       317 lall~~~sg------------s~ir~l~~h~k~i~c~~~~~----------------~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  317 LALLNLLEG------------SFVRRLSTHLKRINCAAYRP----------------DFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEEEccCc------------eEEEeeecccceeeEEeecC----------------chhhhhccccCCccccccc
Confidence            999998887            67788889999999999999                7888999999999999987

>KOG0294|consensus

Probab=99.98  E-value=1.1e-29  Score=192.73  Aligned_cols=269  Identities=19%  Similarity=0.264  Sum_probs=208.2

Q ss_pred             EEEEeCCCcEEEEecCCCC----------ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988           38 FLSGSLDGKLRLWNIPDKK----------VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        38 l~t~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  107 (408)
                      |++|+....|.=+++....          ..+...+..|.+++++++.  ++.++++|+.|-+|+|||+....+...+. 
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll-   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL-   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee-
Confidence            5666666666655553221          2223467789999999998  68999999999999999999876655443 


Q ss_pred             eeccccccCCCCeEEEeeCCCCC--eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceE
Q psy988          108 RSTRGKNATGRKISGIEPMPGED--KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  185 (408)
Q Consensus       108 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  185 (408)
                             .|.+.|+++.|.++-.  .|++|+.||.|.+|+...-.++..++.|.+.  |+.++.+|.++.-++.+.|+.+
T Consensus        81 -------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg~D~~l  151 (362)
T KOG0294|consen   81 -------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHPSGKLALSVGGDQVL  151 (362)
T ss_pred             -------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecCCCceEEEEcCCcee
Confidence                   4567999999998765  8999999999999999999999999998876  8899999999999999999999


Q ss_pred             EEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE
Q psy988          186 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI  265 (408)
Q Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (408)
                      ++||+-.+...+..          .+                                      ....+.+.|+|.|.++
T Consensus       152 r~WNLV~Gr~a~v~----------~L--------------------------------------~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVL----------NL--------------------------------------KNKATLVSWSPQGDHF  183 (362)
T ss_pred             eeehhhcCccceee----------cc--------------------------------------CCcceeeEEcCCCCEE
Confidence            99999665332210          00                                      0111225566667767


Q ss_pred             EEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee
Q psy988          266 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  345 (408)
Q Consensus       266 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  345 (408)
                      +.+..+ .|-+|.+.+.+....+...   ..+.++.|- ++..|++|..|+.|.+||.+..            .++..+.
T Consensus       184 ~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~------------~~~~~~~  246 (362)
T KOG0294|consen  184 VVSGRN-KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDNEWISLKDTDSD------------TPLTEFL  246 (362)
T ss_pred             EEEecc-EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCCceEEEeccCCC------------ccceeee
Confidence            776665 5999999887766555443   234455554 5778999999999999999875            5778899


Q ss_pred             eeccceEEEEe--cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          346 AHNAVVTCAVF--APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       346 ~h~~~v~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      +|..+|.++.+  .|                ++.+|+|++.||.|+|||+...++.
T Consensus       247 AH~~RVK~i~~~~~~----------------~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  247 AHENRVKDIASYTNP----------------EHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             cchhheeeeEEEecC----------------CceEEEEeccCceEEEEEccccccC
Confidence            99999999985  34                7889999999999999999887544

>KOG0289|consensus

Probab=99.98  E-value=7.4e-30  Score=201.80  Aligned_cols=263  Identities=15%  Similarity=0.270  Sum_probs=214.4

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |..+.++|...++.+.++. |...|+.+.|+| +...+++++.|..|+||........  .....|..+|+.+..+|.|.
T Consensus       240 d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~--~~~~~h~~~V~~ls~h~tge  316 (506)
T KOG0289|consen  240 DKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEP--TSSRPHEEPVTGLSLHPTGE  316 (506)
T ss_pred             CCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCc--cccccccccceeeeeccCCc
Confidence            6788999999999999997 999999999999 8999999999999999999877655  67889999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      ||++++.||+..+.|++++.........      ...-.+++.+|+|||..|.+|..||.|++||+.++.....|.+|..
T Consensus       317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~  390 (506)
T KOG0289|consen  317 YLLSASNDGTWAFSDISSGSQLTVVSDE------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG  390 (506)
T ss_pred             EEEEecCCceEEEEEccCCcEEEEEeec------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence            9999999999999999998876554422      1123689999999999999999999999999999998999999776


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      .  |..++|+.+|-+|+++.+|+.|++||++....            +.++..                           
T Consensus       391 ~--vk~i~FsENGY~Lat~add~~V~lwDLRKl~n------------~kt~~l---------------------------  429 (506)
T KOG0289|consen  391 P--VKAISFSENGYWLATAADDGSVKLWDLRKLKN------------FKTIQL---------------------------  429 (506)
T ss_pred             c--eeEEEeccCceEEEEEecCCeEEEEEehhhcc------------cceeec---------------------------
Confidence            5  88999999999999999999999999975321            111110                           


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC--CeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                             .....+.++.|.+.|.+|+.++.|=.|++++-.+  ...+..+..|.  +..+.+.|..+.+++++++.|..+
T Consensus       430 -------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l  500 (506)
T KOG0289|consen  430 -------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAIL  500 (506)
T ss_pred             -------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhhe
Confidence                   1112455566666677778887776777776443  44555555544  366789999999999999999998


Q ss_pred             EEeec
Q psy988          319 YIWKT  323 (408)
Q Consensus       319 ~iw~~  323 (408)
                      +++.+
T Consensus       501 ~~~a~  505 (506)
T KOG0289|consen  501 RLYAL  505 (506)
T ss_pred             EEeec
Confidence            88764

>KOG0646|consensus

Probab=99.98  E-value=3.4e-30  Score=205.54  Aligned_cols=289  Identities=15%  Similarity=0.158  Sum_probs=211.0

Q ss_pred             CcEEEEecCCCCceeeeeecCC-ceeeEEEEEecCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQ-TKLITAANFCENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      .++.+||+.+|...  ..+++. ...-.++.. -++.+++++.. ...+.+|.+.......+..        -..+++.+
T Consensus        18 ~~~~~~dl~TGt~~--~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~--------v~Pg~v~a   86 (476)
T KOG0646|consen   18 INCIVWDLRTGTSL--LQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYI--------VLPGPVHA   86 (476)
T ss_pred             cceeEEecCCCcee--EEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhc--------ccccceee
Confidence            45999999998765  234332 111111111 13356666654 3578999987655433111        12358999


Q ss_pred             EeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeeccc
Q psy988          123 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR  202 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  202 (408)
                      ++-+|.|.+|+.|+..|.|++|.+.+|.++..+..|...  ++++.|+.||.+|++|+.||.|.+|.+..-.....   .
T Consensus        87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~--ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~---~  161 (476)
T KOG0646|consen   87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS--ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN---D  161 (476)
T ss_pred             eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc--eeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc---C
Confidence            999999999999989999999999999999988777654  88999999999999999999999998743111100   0


Q ss_pred             CCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC--CCeEEEecCCCeEEEEEcC
Q psy988          203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLR  280 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~  280 (408)
                      ....++.                                   .+..|.-+|+.+...+.  ..++++++.|.++++||+.
T Consensus       162 ~~~~p~~-----------------------------------~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  162 HSVKPLH-----------------------------------IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             CCcccee-----------------------------------eeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            0122233                                   34445555555544433  4678999999999999999


Q ss_pred             CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccc----ccccCccccceeeeeecc--ceEEE
Q psy988          281 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS----SVRRDRNDFWEGIKAHNA--VVTCA  354 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~~h~~--~v~~~  354 (408)
                      .+.++.++..   +..+.+++.+|-++.+++|+.+|.|.+.++........    .........+..+.+|.+  .|+|+
T Consensus       207 ~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  207 LGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             cceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence            9998888765   33688999999999999999999999998876432111    111122345667889998  99999


Q ss_pred             EecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          355 VFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      +.+-                ||.+|++|+.||.|+|||+.+.+.+.++.
T Consensus       284 ais~----------------DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  284 AIST----------------DGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             EEec----------------CccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            9999                99999999999999999999998776654

>KOG0268|consensus

Probab=99.98  E-value=3.9e-31  Score=204.36  Aligned_cols=259  Identities=19%  Similarity=0.335  Sum_probs=200.5

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      +||.|+|||+.+.+++..+. |.+.|..+++..   ..+++++.|.+|+.|.++.. ..  ..+.+ ...+..+.-+..+
T Consensus        87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~--~tilg-~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PL--HTILG-KSVYLGIDHHRKN  159 (433)
T ss_pred             cCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC-cc--eeeec-ccccccccccccc
Confidence            59999999999999999999 999999999974   56899999999999998764 22  33333 4456677766677


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEEEEEccCcccceeecCc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      ..+++++.  .|.|||.+-......+....        ..|.++.|+|.... |++++.|+.|.+||+++..++......
T Consensus       160 ~~FaTcGe--~i~IWD~~R~~Pv~smswG~--------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~  229 (433)
T KOG0268|consen  160 SVFATCGE--QIDIWDEQRDNPVSSMSWGA--------DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT  229 (433)
T ss_pred             ccccccCc--eeeecccccCCccceeecCC--------CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee
Confidence            78888875  59999998766665554332        47999999997665 555669999999999999988776544


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      ..   ...++|+|+.-.|++|++|..++.||++.-           ..++....+|.+.|.                   
T Consensus       230 mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l-----------~~p~~v~~dhvsAV~-------------------  276 (433)
T KOG0268|consen  230 MR---TNTICWNPEAFNFVAANEDHNLYTYDMRNL-----------SRPLNVHKDHVSAVM-------------------  276 (433)
T ss_pred             cc---ccceecCccccceeeccccccceehhhhhh-----------cccchhhcccceeEE-------------------
Confidence            33   345899998888999999999999999743           233344444544444                   


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                                      ++.|+|.|+.+++|+.|.+|+||..+.+...-.+.. .....|.++.||.|.+|+++||.|+.|
T Consensus       277 ----------------dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  277 ----------------DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             ----------------EeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcce
Confidence                            455555666779999999999999987765444332 223468899999999999999999999


Q ss_pred             EEeecccc
Q psy988          319 YIWKTHHD  326 (408)
Q Consensus       319 ~iw~~~~~  326 (408)
                      ++|.....
T Consensus       340 RlWka~As  347 (433)
T KOG0268|consen  340 RLWKAKAS  347 (433)
T ss_pred             eeeecchh
Confidence            99998764

>KOG1036|consensus

Probab=99.98  E-value=1.2e-29  Score=192.13  Aligned_cols=262  Identities=17%  Similarity=0.257  Sum_probs=204.4

Q ss_pred             CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .||++++||+...+....+.|..++.+++|.+  ...+++|+.||.|+.+|+.++...   .+..|..+|.++.+++...
T Consensus        33 WDgslrlYdv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci~~~~~~~  107 (323)
T KOG1036|consen   33 WDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCIEYSYEVG  107 (323)
T ss_pred             ccCcEEEEeccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCcce---eeccCCCceEEEEeeccCC
Confidence            48999999999999999999999999999996  556999999999999999998765   7788999999999999888


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      .+++|+.|++|++||.+........         .....|.++...  ++.|++|+.+..+.+||+++...........-
T Consensus       108 ~vIsgsWD~~ik~wD~R~~~~~~~~---------d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l  176 (323)
T KOG1036|consen  108 CVISGSWDKTIKFWDPRNKVVVGTF---------DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL  176 (323)
T ss_pred             eEEEcccCccEEEEecccccccccc---------ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccc
Confidence            9999999999999999863222111         122378888775  88999999999999999998775554433334


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      ...+.++++-|++.=+++++-||.|.+=.+....               .....+-...|-....++..++         
T Consensus       177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~---------------~~~skkyaFkCHr~~~~~~~~~---------  232 (323)
T KOG1036|consen  177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE---------------EAQSKKYAFKCHRLSEKDTEII---------  232 (323)
T ss_pred             eeEEEEEEEecCCCceEEEeecceEEEEccCCch---------------HHhhhceeEEeeecccCCceEE---------
Confidence            4557789999988889999999988875543320               0011111122222222222222         


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                .+|.+++|+|-...|++|+.||.|.+||+.+.+.+..+...  ...|.+++|+.||..||+++.
T Consensus       233 ----------yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  233 ----------YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ----------EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence                      37888999999999999999999999999999988888765  347889999999999999863

>KOG0310|consensus

Probab=99.98  E-value=5e-30  Score=205.74  Aligned_cols=259  Identities=18%  Similarity=0.298  Sum_probs=205.6

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC-CCE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-GKF   81 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~   81 (408)
                      .+.||+..+....+++. .++.|.+++|-. ||++||+|...|.|+|+|..+...+  ..+.+|+.++..+.|+|. +..
T Consensus        49 rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iL--R~~~ah~apv~~~~f~~~d~t~  125 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVIL--RQLYAHQAPVHVTKFSPQDNTM  125 (487)
T ss_pred             EEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHH--HHHhhccCceeEEEecccCCeE
Confidence            46788888888877665 889999999999 9999999999999999996664444  789999999999999996 456


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCc-ccceeecCcc
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDL-NLSCKYKGYV  159 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  159 (408)
                      +++|+.|+.+++||+.+...  ..      ...+|...|.|.+|+|... .+++|+.||.|++||++.. ..+..+. |.
T Consensus       126 l~s~sDd~v~k~~d~s~a~v--~~------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg  196 (487)
T KOG0310|consen  126 LVSGSDDKVVKYWDLSTAYV--QA------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HG  196 (487)
T ss_pred             EEecCCCceEEEEEcCCcEE--EE------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CC
Confidence            77888889999999998763  11      1246778999999999655 7888999999999999987 3444443 22


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                        .++-.+.+-|.|..|++++. ..+++||+-++.           +.+..+..|...|+|+.+..+             
T Consensus       197 --~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~-----------qll~~~~~H~KtVTcL~l~s~-------------  249 (487)
T KOG0310|consen  197 --CPVESVLALPSGSLIASAGG-NSVKVWDLTTGG-----------QLLTSMFNHNKTVTCLRLASD-------------  249 (487)
T ss_pred             --CceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc-----------eehhhhhcccceEEEEEeecC-------------
Confidence              34667899999999998875 479999997543           223334446666666666554             


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                                            +..|++++-|+.+++||+.+.+.+..+.-   +.+|.+++.+|+++.++.|..+|.+.
T Consensus       250 ----------------------~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  250 ----------------------STRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ----------------------CceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceee
Confidence                                  55678999999999999988888777664   44899999999999999999999988


Q ss_pred             Eeecccc
Q psy988          320 IWKTHHD  326 (408)
Q Consensus       320 iw~~~~~  326 (408)
                      +-+....
T Consensus       305 ~rr~~~k  311 (487)
T KOG0310|consen  305 IRRREVK  311 (487)
T ss_pred             eehhhcc
Confidence            7755443

>KOG0308|consensus

Probab=99.97  E-value=9.2e-31  Score=217.06  Aligned_cols=337  Identities=16%  Similarity=0.208  Sum_probs=238.4

Q ss_pred             CceEEEEeccCCe------eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            2 DKTVRLWHISRKE------CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~------~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      ||.|++|++....      .+..++ |.+.|+.+.... +++.|+++|.|-+|++|+...+.......+..|...|.|++
T Consensus        46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla  124 (735)
T KOG0308|consen   46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLA  124 (735)
T ss_pred             CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeee
Confidence            8999999985432      245555 999999999998 89899999999999999998875334478899999999999


Q ss_pred             E-ecCCCEEEEEecCCEEEEEeccCCee--eEEEEEeeccccc-cCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           75 F-CENGKFAVVGSYDGRCIFYTTDQLKY--HTQIHVRSTRGKN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        75 ~-~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      + .++...+|+|+.|+.|.+||+.++..  ............. ++...|.+++-++.+..+++|+.++.+++||.++.+
T Consensus       125 ~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~  204 (735)
T KOG0308|consen  125 YIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK  204 (735)
T ss_pred             ecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence            9 78889999999999999999997632  2222222222222 667799999999999999999999999999999999


Q ss_pred             cceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      .+..+.+|...  |..+..++||..+++++.||+|++||+..            ..++.++..|...|.++..       
T Consensus       205 kimkLrGHTdN--Vr~ll~~dDGt~~ls~sSDgtIrlWdLgq------------QrCl~T~~vH~e~VWaL~~-------  263 (735)
T KOG0308|consen  205 KIMKLRGHTDN--VRVLLVNDDGTRLLSASSDGTIRLWDLGQ------------QRCLATYIVHKEGVWALQS-------  263 (735)
T ss_pred             ceeeeeccccc--eEEEEEcCCCCeEeecCCCceEEeeeccc------------cceeeeEEeccCceEEEee-------
Confidence            99999988765  77889999999999999999999999954            3344445555555555544       


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEEeeccceeceeEEEEcCCCCEE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l  309 (408)
                                                  +|+-.++++|+.||.|..=|+++.. ....++. .+  ++..+..+.+.+-+
T Consensus       264 ----------------------------~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~-da--Pv~~l~~~~~~~~~  312 (735)
T KOG0308|consen  264 ----------------------------SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE-DA--PVLKLHLHEHDNSV  312 (735)
T ss_pred             ----------------------------CCCcceEEecCCCCcEEecccCCchhheEeecC-CC--chhhhhhccccCCc
Confidence                                        4556678999999999999999843 3333322 22  55566666555555


Q ss_pred             EEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC-----CchhhhhccCCCCCCCcccEEEEEec
Q psy988          310 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP-----CPELIIAQMEPDKSESTGYVLVSADF  384 (408)
Q Consensus       310 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~~~~~~~~~~~s~~~~~l~s~~~  384 (408)
                      -+++.|+.|+-|............     .+..........+.+....|     .|.-|.-    .++=.|.+.++|-..
T Consensus       313 WvtTtds~I~rW~~~~~~~l~~s~-----~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k----~~mL~dkRhVlTkDa  383 (735)
T KOG0308|consen  313 WVTTTDSSIKRWKLEPDIALSVSG-----DLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKK----HAMLNDKRHVLTKDA  383 (735)
T ss_pred             eeeeccccceecCCccccccccCC-----CCCcccccCCCccccccCCCceeccCchhhhh----hhhhcCcceEeeecC
Confidence            777889999999876432110000     00000000011111111111     0100000    011227899999999


Q ss_pred             CCeEEEEeCCCCCCcc
Q psy988          385 NGVIRVFLNKTKPKHS  400 (408)
Q Consensus       385 dg~v~iw~~~~~~~~~  400 (408)
                      .|.+.+||+-...+..
T Consensus       384 ~gnv~lwDIl~~~~~~  399 (735)
T KOG0308|consen  384 KGNVALWDILACVKVE  399 (735)
T ss_pred             CCCEEEEEeeeeeehh
Confidence            9999999997765543

>KOG1273|consensus

Probab=99.97  E-value=7.3e-30  Score=193.88  Aligned_cols=296  Identities=17%  Similarity=0.260  Sum_probs=215.9

Q ss_pred             EeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEe
Q psy988           16 LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        16 ~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~   95 (408)
                      ..++.|.. ..|+.|++ .|.+||+|+.||.|.|||+.+....  +.+.+|..+|++++||++|+.|++++.|..|.+||
T Consensus        18 ~~tld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~ia--r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   18 THTLDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIA--RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             ceeccCCc-cceEEecc-CcceeeeeccCCcEEEEEccccchh--hhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            34555555 88999999 9999999999999999999998866  78999999999999999999999999999999999


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCc--cccccceEEEEecC
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHD  172 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~  172 (408)
                      +..+.....+.+.         ++|..+.|+|.....+++ -.+..-.+.++........-...  .......+..|.+.
T Consensus        94 l~~gs~l~rirf~---------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~  164 (405)
T KOG1273|consen   94 LLKGSPLKRIRFD---------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR  164 (405)
T ss_pred             ccCCCceeEEEcc---------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC
Confidence            9999877766654         489999999965544443 33344445555432211111111  11111223458999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      |+++++|...|.+.++|..+-...            ..++.                                  .....
T Consensus       165 g~yIitGtsKGkllv~~a~t~e~v------------as~ri----------------------------------ts~~~  198 (405)
T KOG1273|consen  165 GKYIITGTSKGKLLVYDAETLECV------------ASFRI----------------------------------TSVQA  198 (405)
T ss_pred             CCEEEEecCcceEEEEecchheee------------eeeee----------------------------------chhee
Confidence            999999999999999998652111            11110                                  01235


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCC-------ee--eeEEeeccceeceeEEEEcCCCCEEEEecC-CceEEEee
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDL-------NL--SCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWK  322 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~  322 (408)
                      |.++.++..|+.|+.-+.|..||.|+++.-       ++  .++++...+...-.+++||.+|.|+++++. ...++||.
T Consensus       199 IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  199 IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            667777888888999999999999998731       11  122222223334457899999999988764 46899999


Q ss_pred             ccccCccccccccCccccceeeeeec-cceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          323 THHDYAKFSSVRRDRNDFWEGIKAHN-AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      ...+            .+++.+.|.. .....+.|+|                -...+++- ..|.|+||.....+.-
T Consensus       279 ~~~G------------sLVKILhG~kgE~l~DV~whp----------------~rp~i~si-~sg~v~iw~~~~~enw  327 (405)
T KOG1273|consen  279 KSIG------------SLVKILHGTKGEELLDVNWHP----------------VRPIIASI-ASGVVYIWAVVQVENW  327 (405)
T ss_pred             cCCc------------ceeeeecCCchhheeeccccc----------------ceeeeeec-cCCceEEEEeecccch
Confidence            9887            6788888777 5677899999                66677777 6899999998765543

>KOG0639|consensus

Probab=99.97  E-value=1.5e-30  Score=209.75  Aligned_cols=282  Identities=16%  Similarity=0.267  Sum_probs=231.8

Q ss_pred             eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-eeeeeec--CCceeeEEEEEecCCCEEEEEecCCE
Q psy988           14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-AVWNEVE--GQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      +.+.++.|.+-|.++.+|. ..+++.||+. |.|+|||+....- .+...+.  .....|.++.+.|||+.|++|+.-.+
T Consensus       411 rq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast  488 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST  488 (705)
T ss_pred             HhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence            3455677999999999998 8889999987 8999999965321 1112222  23567999999999999999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      +.|||+..........+..      ..-....++.+||.+..++++.||.|.|||+.+...++.|++|...  +.|+.++
T Consensus       489 lsiWDLAapTprikaelts------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG--ascIdis  560 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTS------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG--ASCIDIS  560 (705)
T ss_pred             eeeeeccCCCcchhhhcCC------cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC--ceeEEec
Confidence            9999998765443332221      1225677899999999999999999999999999999999999876  6689999


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccc--ccceEEEEEEeCCcceeeeecCCCC------CCCc
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDK------SEST  242 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~  242 (408)
                      +||..|.+|+-|.+|+.||++++..               +..  ..+.|.++..+|++.++++++.+..      .+..
T Consensus       561 ~dGtklWTGGlDntvRcWDlregrq---------------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~  625 (705)
T KOG0639|consen  561 KDGTKLWTGGLDNTVRCWDLREGRQ---------------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE  625 (705)
T ss_pred             CCCceeecCCCccceeehhhhhhhh---------------hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence            9999999999999999999987532               222  2467899999999999999877765      4556


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEee
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  322 (408)
                      .+.+..|...|.++.|.+-|+++++.+.|+-+..|...-|..+...+.   ...|.++.+|.|.++|++|+.|....+|.
T Consensus       626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEE
Confidence            677788999999999999999999999999999999988876655543   45789999999999999999998888886


Q ss_pred             c
Q psy988          323 T  323 (408)
Q Consensus       323 ~  323 (408)
                      +
T Consensus       703 V  703 (705)
T KOG0639|consen  703 V  703 (705)
T ss_pred             E
Confidence            5

>KOG0643|consensus

Probab=99.97  E-value=3.8e-29  Score=185.61  Aligned_cols=279  Identities=17%  Similarity=0.206  Sum_probs=202.1

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |.+..||-..+|+.+-++. |.+.|+|++.+- +.++++||+.|.++++||+++|+++  ..++ ...+|..+.|+++|+
T Consensus        31 D~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~l--a~~k-~~~~Vk~~~F~~~gn  106 (327)
T KOG0643|consen   31 DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQL--ATWK-TNSPVKRVDFSFGGN  106 (327)
T ss_pred             CCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEE--EEee-cCCeeEEEeeccCCc
Confidence            6788999999999999997 999999999999 8999999999999999999999987  3444 356899999999999


Q ss_pred             EEEEEecC-----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc-ee
Q psy988           81 FAVVGSYD-----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-CK  154 (408)
Q Consensus        81 ~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~  154 (408)
                      +++.+..+     +.|.++|++......... ........+.+.++.+.|.|-++.|++|.++|.|..||++++... ..
T Consensus       107 ~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~-ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s  185 (327)
T KOG0643|consen  107 LILASTDKQMGYTCFVSVFDIRDDSSDIDSE-EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS  185 (327)
T ss_pred             EEEEEehhhcCcceEEEEEEccCChhhhccc-CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec
Confidence            88877654     689999998543111000 001111123368999999999999999999999999999997544 33


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      ...|..  .+..+++++|..++++++.|.+-++||..+-...            +++ .-..++++.+++|....++.+.
T Consensus       186 ~~~h~~--~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~------------Kty-~te~PvN~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  186 DEEHSS--KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL------------KTY-TTERPVNTAAISPLLDHVILGG  250 (327)
T ss_pred             hhhhcc--ccccccccCCcceEEecccCccceeeeccceeeE------------EEe-eecccccceecccccceEEecC
Confidence            344444  5889999999999999999999999998753221            111 1234566666666555543321


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                      .....                        -+-+ ....|  ..++|++-..+.+..+++|-+  +|.+++|+|+|+..++
T Consensus       251 GqeA~------------------------dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG--PINsvAfhPdGksYsS  304 (327)
T KOG0643|consen  251 GQEAM------------------------DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG--PINSVAFHPDGKSYSS  304 (327)
T ss_pred             Cceee------------------------eeeeecccccchhhhHHHHHHHHHhcccccccc--CcceeEECCCCccccc
Confidence            11000                        0000 01111  123444433455666777766  8999999999999999


Q ss_pred             ecCCceEEEeecccc
Q psy988          312 GSENQCIYIWKTHHD  326 (408)
Q Consensus       312 ~~~dg~i~iw~~~~~  326 (408)
                      |++||.|++..+...
T Consensus       305 GGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  305 GGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCCceEEEEEeccc
Confidence            999999999887654

>KOG0264|consensus

Probab=99.97  E-value=4.9e-30  Score=204.08  Aligned_cols=258  Identities=15%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             EEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--------ceeeeeecCCceeeEEEEEecC-CCEEEEEecC
Q psy988           18 CFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK--------VAVWNEVEGQTKLITAANFCEN-GKFAVVGSYD   88 (408)
Q Consensus        18 ~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d   88 (408)
                      .+.|.+.|+.+.+-|++..++|+.+..+.|.|||..+..        +.+...+.+|...-.+++|++. .-.|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            344999999999999999999999999999999986532        2333478899988889999985 4468999999


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccC--cccceeecCccccccce
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRD--LNLSCKYKGYVNVSSQI  165 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~  165 (408)
                      +.|++||+....... ..........+|...|..++|++. ...|.+++.|+.+.|||+|+  .++......|..  .+.
T Consensus       200 ~~i~lwdi~~~~~~~-~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~--~vn  276 (422)
T KOG0264|consen  200 HTICLWDINAESKED-KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA--EVN  276 (422)
T ss_pred             CcEEEEeccccccCC-ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC--cee
Confidence            999999998755421 112222234567889999999995 45677789999999999995  444444455544  488


Q ss_pred             EEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          166 KASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       166 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      +++|+|- +..||+|+.|++|++||+++-           ..++..+.+|...|.++.|+|....+              
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-----------~~~lh~~e~H~dev~~V~WSPh~etv--------------  331 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNL-----------NKPLHTFEGHEDEVFQVEWSPHNETV--------------  331 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhc-----------ccCceeccCCCcceEEEEeCCCCCce--------------
Confidence            9999994 556888999999999999853           34567888999999999999987665              


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--------------eeeEEeeccceeceeEEEEcCCCCE-E
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--------------LSCKYKGYVNVSSQIKASFSHDGKY-I  309 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~-l  309 (408)
                                          |++++.|+.+.+||+..-.              ++..-.+|.  ..|..+.|+|+..+ |
T Consensus       332 --------------------LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsWnp~ePW~I  389 (422)
T KOG0264|consen  332 --------------------LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSWNPNEPWTI  389 (422)
T ss_pred             --------------------eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc--cccccccCCCCCCeEE
Confidence                                7889999999999986421              223333443  47889999998775 6


Q ss_pred             EEecCCceEEEeeccc
Q psy988          310 VSGSENQCIYIWKTHH  325 (408)
Q Consensus       310 ~~~~~dg~i~iw~~~~  325 (408)
                      ++.++|+.+.||+...
T Consensus       390 ~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  390 ASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEecCCceEEEeeccc
Confidence            6789999999999874

>KOG0772|consensus

Probab=99.97  E-value=9.5e-30  Score=205.61  Aligned_cols=275  Identities=15%  Similarity=0.178  Sum_probs=203.8

Q ss_pred             CCceEEEEeccCCe----eEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee----------eeeec
Q psy988            1 MDKTVRLWHISRKE----CLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV----------WNEVE   64 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~----~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~----------~~~~~   64 (408)
                      +|.+|+.||+..-.    ..+.+.  ....|+++.|++ .+..|++.+.....+|+|-...+...          ....+
T Consensus       187 ~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTK  265 (641)
T KOG0772|consen  187 LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTK  265 (641)
T ss_pred             ccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccC
Confidence            58899999997532    223333  566899999999 77777777777889999976544321          23457


Q ss_pred             CCceeeEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988           65 GQTKLITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  143 (408)
                      +|...+++.+|+|.. ..+++++.||++++|++...+.....  .......+..-+++.++|+++++.+++|+.||.|.+
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV--ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV--IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI  343 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE--EeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence            899999999999964 56899999999999999876643332  222222344457899999999999999999999999


Q ss_pred             EEccCcccc---eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          144 YDLRDLNLS---CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       144 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      |+.......   ..-..|.....+.++.|+++|++|++-+.|+++++||++..+..           +....+-      
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-----------L~~~tgL------  406 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-----------LNVRTGL------  406 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-----------hhhhcCC------
Confidence            998643321   22345666667999999999999999999999999999754322           1111111      


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec------CCCeEEEEEcCCCeeeeEEeeccce
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS------NDSRIRLYDLRDLNLSCKYKGYVNV  294 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~  294 (408)
                                                 .....-+.++|||+.++|++|+      ..|.+.+||..+.+.+..+...  .
T Consensus       407 ---------------------------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~  457 (641)
T KOG0772|consen  407 ---------------------------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--T  457 (641)
T ss_pred             ---------------------------CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--C
Confidence                                       1112234566777777777764      4578999999998888887764  3


Q ss_pred             eceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          295 SSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       295 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      ..|..+.|+|.-+.|.+|+.||.+++|=-.
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             ceEEEEeecchhhheeeecCCCceEEEECc
Confidence            478899999999999999999999987543

>KOG0308|consensus

Probab=99.97  E-value=2.6e-30  Score=214.46  Aligned_cols=292  Identities=17%  Similarity=0.220  Sum_probs=222.6

Q ss_pred             eCCceE---EEEEcCCCCCEEEEEeCCCcEEEEecCCCCce----eeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           21 HIDFVT---AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA----VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        21 h~~~v~---~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      |...|.   ++..+..++++|+|||.||.|++|++....-.    ....++.|...|..+....+++.|+++|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            566666   56666658889999999999999998654321    23578899999999999999999999999999999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEee-CCCCCeEEEeeCCCeEEEEEccCcc--cceeec-------Ccccccc
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEP-MPGEDKILVTSNDSRIRLYDLRDLN--LSCKYK-------GYVNVSS  163 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-------~~~~~~~  163 (408)
                      |+.....      .........|...|.|+++ .++...+++|+-|+.|.+||++++.  .+..+.       .......
T Consensus       100 W~~~~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen  100 WNAHKDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             eecccCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            9987653      1122233457789999999 7888899999999999999999772  222221       1123455


Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  243 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
                      +.+++.++.|..|++|+..+.+++||.++...            +..+.+|...|..+..++|                 
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------------imkLrGHTdNVr~ll~~dD-----------------  224 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------------IMKLRGHTDNVRVLLVNDD-----------------  224 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccc------------eeeeeccccceEEEEEcCC-----------------
Confidence            88899999999999999999999999977432            3445667666666666555                 


Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                                        |..+++++.||+|++||+...+++.++..|..  .+.++..+|+-.++++|+.||.|..=|+
T Consensus       225 ------------------Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  225 ------------------GTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             ------------------CCeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEeccc
Confidence                              55568899999999999999999999998877  5889999999999999999999999999


Q ss_pred             cccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      .+..            ....+-....+|..+..+.                ..+-+-++..|+.|+-|....
T Consensus       285 ~n~~------------~~tlick~daPv~~l~~~~----------------~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  285 RNPA------------KSTLICKEDAPVLKLHLHE----------------HDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             CCch------------hheEeecCCCchhhhhhcc----------------ccCCceeeeccccceecCCcc
Confidence            8741            1112222345566666664                333345566778888886653

>KOG2048|consensus

Probab=99.97  E-value=8.7e-28  Score=200.46  Aligned_cols=371  Identities=13%  Similarity=0.175  Sum_probs=260.8

Q ss_pred             CceEEEEeccCCeeEeEE-E--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCF-Q--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~-~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ||.|-|||+..+=..... .  -...|.+++|++  +..|++.+.+|+|.-||+.+.+..  .......+.|.+++.+|.
T Consensus        46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~~--~~~d~~gg~IWsiai~p~  121 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQK--YNIDSNGGAIWSIAINPE  121 (691)
T ss_pred             CCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEecccCcee--EEecCCCcceeEEEeCCc
Confidence            799999999876544333 2  557799999996  556889999999999999999877  677888899999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee---
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY---  155 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---  155 (408)
                      +..++.|+.||.+..++...++......+..      ..+.+.++.|+|++..++.|+.||.|++||..++......   
T Consensus       122 ~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~  195 (691)
T KOG2048|consen  122 NTILAIGCDDGVLYDFSIGPDKITYKRSLMR------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ  195 (691)
T ss_pred             cceEEeecCCceEEEEecCCceEEEEeeccc------ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec
Confidence            9999999999988888887776544433322      2468999999999999999999999999999988766521   


Q ss_pred             --cCcc-ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          156 --KGYV-NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       156 --~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                        .... ...-+.++.|-.++ .|++|...|+|.+||...            ...++....|...|.+++..+++.+++.
T Consensus       196 ~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~------------gTLiqS~~~h~adVl~Lav~~~~d~vfs  262 (691)
T KOG2048|consen  196 LDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIF------------GTLIQSHSCHDADVLALAVADNEDRVFS  262 (691)
T ss_pred             ccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccC------------cchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence              1111 22335566666555 699999999999999865            4556778899999999999999888877


Q ss_pred             ecCCCC--------CCC---ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEE
Q psy988          233 QMEPDK--------SES---TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       233 ~~~~~~--------~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  301 (408)
                      ++-+..        ...   .......|...+.+++..++  .+++|+.|..+.+-..+..+...... +.....-..+.
T Consensus       263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~-~~~~p~~~~v~  339 (691)
T KOG2048|consen  263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQ-KNLFPASDRVS  339 (691)
T ss_pred             ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhc-cccccccceee
Confidence            644433        111   12223467888999999887  88999999998886655422111110 00000000122


Q ss_pred             EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC-----------
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD-----------  370 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-----------  370 (408)
                      ..|. ++|..--.+..+.+|.+.+.....   ..+...+++....-...|.+.+.||+|++|+.+.-..           
T Consensus       340 ~a~~-~~L~~~w~~h~v~lwrlGS~~~~g---~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~  415 (691)
T KOG2048|consen  340 VAPE-NRLLVLWKAHGVDLWRLGSVILQG---EYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPN  415 (691)
T ss_pred             cCcc-ceEEEEeccccccceeccCccccc---ccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcc
Confidence            2333 333333345566677765542111   0111123333333445688888888888888766111           


Q ss_pred             ------------------------------------------------------------------CCCCcccEEEEEec
Q psy988          371 ------------------------------------------------------------------KSESTGYVLVSADF  384 (408)
Q Consensus       371 ------------------------------------------------------------------~~s~~~~~l~s~~~  384 (408)
                                                                                        ..|++|++||..+.
T Consensus       416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t  495 (691)
T KOG2048|consen  416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST  495 (691)
T ss_pred             eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec
Confidence                                                                              66899999999999


Q ss_pred             CCeEEEEeCCCCCCcccc
Q psy988          385 NGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       385 dg~v~iw~~~~~~~~~~~  402 (408)
                      +|.|.+|++++++.+...
T Consensus       496 ~g~I~v~nl~~~~~~~l~  513 (691)
T KOG2048|consen  496 RGQIFVYNLETLESHLLK  513 (691)
T ss_pred             cceEEEEEcccceeecch
Confidence            999999999998865443

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.3e-28  Score=210.35  Aligned_cols=236  Identities=15%  Similarity=0.139  Sum_probs=156.4

Q ss_pred             EeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC-CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCC
Q psy988           41 GSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK  119 (408)
Q Consensus        41 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  119 (408)
                      |+.++.|++|+......  ...+.+|...|.+++|+|+ +.+|++|+.||+|++||+.+................+|...
T Consensus        50 GG~~gvI~L~~~~r~~~--v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCceeEEEeeecCCCce--EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            56678999999876543  3688999999999999997 78999999999999999976432110000011112356789


Q ss_pred             eEEEeeCCCCCeE-EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeee
Q psy988          120 ISGIEPMPGEDKI-LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS  198 (408)
Q Consensus       120 v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  198 (408)
                      |.+++|+|++..+ ++++.|+.|++||+++++....+..+   ..+.+++|+|+|.+|++++.|+.              
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~---~~V~SlswspdG~lLat~s~D~~--------------  190 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP---KKLSSLKWNIKGNLLSGTCVGKH--------------  190 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC---CcEEEEEECCCCCEEEEEecCCE--------------
Confidence            9999999988765 67899999999999877654433211   22445555555555555544444              


Q ss_pred             ecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEE
Q psy988          199 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  278 (408)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  278 (408)
                                                                                                 |+|||
T Consensus       191 ---------------------------------------------------------------------------IrIwD  195 (568)
T PTZ00420        191 ---------------------------------------------------------------------------MHIID  195 (568)
T ss_pred             ---------------------------------------------------------------------------EEEEE
Confidence                                                                                       45555


Q ss_pred             cCCCeeeeEEeecccee---ceeEEEEcCCCCEEEEecCCc----eEEEeeccccCccccccccCccccceeee--eecc
Q psy988          279 LRDLNLSCKYKGYVNVS---SQIKASFSHDGKYIVSGSENQ----CIYIWKTHHDYAKFSSVRRDRNDFWEGIK--AHNA  349 (408)
Q Consensus       279 ~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  349 (408)
                      +++++.+..+.+|.+..   .+....|++++.+|++++.|+    .|+|||++...           .++....  .+.+
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----------~pl~~~~ld~~~~  264 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----------SALVTMSIDNASA  264 (568)
T ss_pred             CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------CceEEEEecCCcc
Confidence            55554444555544321   122235678999999877664    79999998532           2333332  2223


Q ss_pred             ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          350 VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       350 ~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      .+......+                +|.++++|+.|+.|++|++..+.
T Consensus       265 ~L~p~~D~~----------------tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        265 PLIPHYDES----------------TGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             ceEEeeeCC----------------CCCEEEEEECCCeEEEEEccCCc
Confidence            333333333                78899999999999999997653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=2.3e-27  Score=198.82  Aligned_cols=285  Identities=14%  Similarity=0.139  Sum_probs=200.9

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |+.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++.++.|++||..+++..  ..+..+.. +..+.|+|+++
T Consensus        10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~-~~~~~~~~~g~   85 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVI--GTLPSGPD-PELFALHPNGK   85 (300)
T ss_pred             CCEEEEEECCCCceEEEEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEE--EeccCCCC-ccEEEECCCCC
Confidence            7999999999999998888656688999999 88766 56778899999999988765  34444433 56789999999


Q ss_pred             EEEEE-ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC-eEEEEEccCcccceeecCc
Q psy988           81 FAVVG-SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS-RIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 ~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  158 (408)
                      .++++ ..++.+++||+.+.+.......         ...+.+++|+|++..++++..++ .+.+||.++++........
T Consensus        86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (300)
T TIGR03866        86 ILYIANEDDNLVTVIDIETRKVLAEIPV---------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD  156 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCeEEeEeeC---------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence            77655 5689999999988654433321         12467899999999999987764 5677899877665443222


Q ss_pred             cccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                         ..+..++|+|++++|+++ ..++.|++||++++.....                      +.+...+.         
T Consensus       157 ---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~----------------------~~~~~~~~---------  202 (300)
T TIGR03866       157 ---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK----------------------ITFEIPGV---------  202 (300)
T ss_pred             ---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee----------------------eeeccccc---------
Confidence               124568999999988655 4589999999976432110                      00000000         


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe-cCC
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-SEN  315 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d  315 (408)
                               .........++|+|+++++++ ...++.+.+||+++++....+.. .  ..+.+++|+|+|++|+++ ..+
T Consensus       203 ---------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~--~~~~~~~~~~~g~~l~~~~~~~  270 (300)
T TIGR03866       203 ---------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-G--QRVWQLAFTPDEKYLLTTNGVS  270 (300)
T ss_pred             ---------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-C--CCcceEEECCCCCEEEEEcCCC
Confidence                     000112334667777777554 35567899999998887665532 2  257789999999999886 468


Q ss_pred             ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      |.|.+||+.++            +.+..+... ...+.++++|
T Consensus       271 ~~i~v~d~~~~------------~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       271 NDVSVIDVAAL------------KVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CeEEEEECCCC------------cEEEEEEcc-cccceeEeCC
Confidence            99999999987            555666543 4558888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=1.2e-27  Score=200.48  Aligned_cols=279  Identities=12%  Similarity=0.099  Sum_probs=197.6

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE-EEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      +..+++++.|+.|++||+.+++..  ..+..+. .+..++|+|+++.+ ++++.++.|++||..+++.......      
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~--~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------   71 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVT--RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS------   71 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceE--EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC------
Confidence            357889999999999999888765  4555443 36789999999876 5667889999999988765332211      


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-eEEEeeec
Q psy988          114 NATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-CIYIWKTH  191 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~  191 (408)
                         ...+..++|+|+++.++++ ..++.|++||+++.+.+..+...   ..+..++|+|++++++++..++ .+.+||..
T Consensus        72 ---~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        72 ---GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             ---CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence               1235678899999988765 45899999999987766655432   2245789999999999888765 46677875


Q ss_pred             cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cC
Q psy988          192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SN  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~  270 (408)
                      +......            ..                                    ....+..++|+|++++++++ ..
T Consensus       146 ~~~~~~~------------~~------------------------------------~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866       146 TYEIVDN------------VL------------------------------------VDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             CCeEEEE------------EE------------------------------------cCCCccEEEECCCCCEEEEEcCC
Confidence            4321100            00                                    01122345667777766544 56


Q ss_pred             CCeEEEEEcCCCeeeeEEeecc-----ceeceeEEEEcCCCCEEEE-ecCCceEEEeeccccCccccccccCccccceee
Q psy988          271 DSRIRLYDLRDLNLSCKYKGYV-----NVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  344 (408)
Q Consensus       271 d~~i~i~d~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  344 (408)
                      ++.|++||+++++.+..+..+.     .......++|+|+++++++ .+.++.+.+||..+.            +....+
T Consensus       178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------------~~~~~~  245 (300)
T TIGR03866       178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------------EVLDYL  245 (300)
T ss_pred             CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------------cEEEEE
Confidence            8999999999988776654321     1112346889999998654 345678999999765            233222


Q ss_pred             eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE-ecCCeEEEEeCCCCCCccccccc
Q psy988          345 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA-DFNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       345 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                       .+...+.+++|+|                +|++|+++ +.+|.|++||+.+++....+++.
T Consensus       246 -~~~~~~~~~~~~~----------------~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       246 -LVGQRVWQLAFTP----------------DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             -EeCCCcceEEECC----------------CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence             2445789999999                88888876 56999999999999987777654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647|consensus

Probab=99.97  E-value=9.7e-29  Score=186.63  Aligned_cols=259  Identities=16%  Similarity=0.221  Sum_probs=196.5

Q ss_pred             CCceEEEEeccC-CeeEeE--EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISR-KECLCC--FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~-~~~~~~--~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .||+||+|+++. +..+-.  ..|.++|.+++|+. +|..+++|+.|+.+++||+.+++..   .+..|.++|..+.|-+
T Consensus        48 WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q~~---~v~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   48 WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQVS---QVAAHDAPVKTCHWVP  123 (347)
T ss_pred             cCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCCee---eeeecccceeEEEEec
Confidence            489999999987 344432  23999999999999 9999999999999999999999764   7888999999999987


Q ss_pred             CCC--EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           78 NGK--FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        78 ~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      ...  .|++||.|.+|+.||.+.......+.++.         .+.++..-  ...++++..++.|.+|+++++......
T Consensus       124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---------RvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~  192 (347)
T KOG0647|consen  124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---------RVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKR  192 (347)
T ss_pred             CCCcceeEecccccceeecccCCCCeeeeeeccc---------eeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhh
Confidence            665  89999999999999999887776665543         56666553  567888899999999999876543332


Q ss_pred             cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      ....-.-.+.+++..++....+.|+-+|.+.+..+..+...          .-..++.|...-.                
T Consensus       193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~----------~nFtFkCHR~~~~----------------  246 (347)
T KOG0647|consen  193 IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK----------DNFTFKCHRSTNS----------------  246 (347)
T ss_pred             hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc----------CceeEEEeccCCC----------------
Confidence            22222334668888888888899999999999988653211          0112233321100                


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                ....-..|.+++|+|....|++++.||++.+||-.....+...+.+..  +|++++|+.+|.++|-+
T Consensus       247 ----------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  247 ----------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ----------CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEE
Confidence                      000112567888888889999999999999999887777766666544  89999999999988754

>KOG0299|consensus

Probab=99.97  E-value=9.9e-29  Score=196.89  Aligned_cols=267  Identities=16%  Similarity=0.200  Sum_probs=206.0

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE---------eecccc-ccCCCCeEEEeeCCCCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV---------RSTRGK-NATGRKISGIEPMPGED  130 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~-~~~~~~v~~~~~~~~~~  130 (408)
                      .....|..++.+++++|++++.++++.+|+|.-|++.+++.......         ...... ..|...+.+++.++|++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            46778999999999999999999999999999999988774421111         111222 36788999999999999


Q ss_pred             eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988          131 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       131 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      +|++|+.|..|.||+.++.+.++.+.+|...  |.+++|-.....+++++.|+.+++|+++.            ...+.+
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~gt~~lys~s~Drsvkvw~~~~------------~s~vet  281 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRKGTSELYSASADRSVKVWSIDQ------------LSYVET  281 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccc--eeeeeeecCccceeeeecCCceEEEehhH------------hHHHHH
Confidence            9999999999999999999999999998876  77899988888899999999999999853            345566


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      +.+|+..|..+....                                   -++.+-+|+.|.++++|++.. +....+.+
T Consensus       282 lyGHqd~v~~IdaL~-----------------------------------reR~vtVGgrDrT~rlwKi~e-esqlifrg  325 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALS-----------------------------------RERCVTVGGRDRTVRLWKIPE-ESQLIFRG  325 (479)
T ss_pred             HhCCccceeeechhc-----------------------------------ccceEEeccccceeEEEeccc-cceeeeeC
Confidence            777777766665433                                   345566778999999999954 33345555


Q ss_pred             ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988          291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                      +..  .+-|++|-. ...+++|+.+|.|.+|++....+.+.............-..+...|++++..|            
T Consensus       326 ~~~--sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~------------  390 (479)
T KOG0299|consen  326 GEG--SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP------------  390 (479)
T ss_pred             CCC--CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc------------
Confidence            543  677788865 46899999999999999988765544321111111101112335899999999            


Q ss_pred             CCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          371 KSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       371 ~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                          ...++|+|+.+|.||+|.+..+
T Consensus       391 ----~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  391 ----GSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ----cCceEEecCCCCceEEEEecCC
Confidence                8899999999999999999877

>KOG1274|consensus

Probab=99.97  E-value=1e-27  Score=206.72  Aligned_cols=271  Identities=17%  Similarity=0.319  Sum_probs=216.1

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      +.|..+-+.++|.| +|.+|++++.||.|++|+.......+ ..+..+...|.+++.  ++.+|++++.+++|.+|....
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence            45999999999999 99999999999999999987663222 334437777777775  556899999999999999988


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      ++....+....        -++.+++|+-+|++++.|+.|-.|++.++.+......+.+|..+  +.++.|+|++++||+
T Consensus        86 ~~~~~iL~Rft--------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   86 GEEDTILARFT--------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDPKGNFLAV  155 (933)
T ss_pred             CCccceeeeee--------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc--eeeeeEcCCCCEEEE
Confidence            77654433222        38999999999999999999999999999999888899988766  889999999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      .+.||.|++||++++.....            +.+-         .|+...                  .....+..++|
T Consensus       156 ss~dG~v~iw~~~~~~~~~t------------l~~v---------~k~n~~------------------~~s~i~~~~aW  196 (933)
T KOG1274|consen  156 SSCDGKVQIWDLQDGILSKT------------LTGV---------DKDNEF------------------ILSRICTRLAW  196 (933)
T ss_pred             EecCceEEEEEcccchhhhh------------cccC---------Cccccc------------------cccceeeeeee
Confidence            99999999999976432211            1100         000000                  11345667788


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      +|++..+++...|+.|++|+..+++....+........+..+.|+|+|+|||+++.||.|.|||.++-.           
T Consensus       197 ~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~-----------  265 (933)
T KOG1274|consen  197 HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE-----------  265 (933)
T ss_pred             cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-----------
Confidence            888888888999999999999999999888876666568899999999999999999999999998621           


Q ss_pred             ccceeeeeeccceEEEEecC
Q psy988          339 DFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~  358 (408)
                       .    ......|.+++|.|
T Consensus       266 -~----~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  266 -R----HEFKRAVCCEAWKP  280 (933)
T ss_pred             -h----ccccceeEEEecCC
Confidence             0    22346799999999

>KOG2055|consensus

Probab=99.97  E-value=2.4e-28  Score=194.78  Aligned_cols=274  Identities=14%  Similarity=0.253  Sum_probs=217.0

Q ss_pred             CCceEEEEeccC--CeeEeEEE-eCCceEEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCceeeeeecCCc-eeeEEEEE
Q psy988            1 MDKTVRLWHISR--KECLCCFQ-HIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT-KLITAANF   75 (408)
Q Consensus         1 ~Dg~i~vwd~~~--~~~~~~~~-h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~   75 (408)
                      +||+++||-++.  ...++.+. -..+|.+.+|.| +|. .+++++....++.||+.+.+...+..+.++. ..+.....
T Consensus       233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV  311 (514)
T KOG2055|consen  233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV  311 (514)
T ss_pred             CCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe
Confidence            689999998864  34555555 778999999999 777 9999999999999999999888767777765 45777888


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      ++++++|+..+..|.|.+....+++.+..+...         +.|..+.|+.+++.|++++.+|.|.+||++...++..+
T Consensus       312 Shd~~fia~~G~~G~I~lLhakT~eli~s~Kie---------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---------GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             cCCCCeEEEcccCceEEeehhhhhhhhheeeec---------cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            999999999999999999999998877766543         48999999999999999999999999999999888887


Q ss_pred             cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      ..... ..-++++.++++.+||+|+..|.|.|||.++....      ...+++..+..-...|+++.|+|+.+.++    
T Consensus       383 ~D~G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s------~~PkPik~~dNLtt~Itsl~Fn~d~qiLA----  451 (514)
T KOG2055|consen  383 VDDGS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS------TNPKPIKTVDNLTTAITSLQFNHDAQILA----  451 (514)
T ss_pred             eecCc-cceeeeeecCCCceEEeccCcceEEEeccchhhcc------CCCCchhhhhhhheeeeeeeeCcchhhhh----
Confidence            65433 34557889999999999999999999997543211      12234445555555666666666655553    


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEEEEecC
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                                   +++-..+..+++-.+.+......++.. ...+.++|++|||.+.+||.|..
T Consensus       452 -----------------------------iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  452 -----------------------------IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             -----------------------------hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence                                         233345678999998887766666543 23457899999999999999999


Q ss_pred             CceEEEeecc
Q psy988          315 NQCIYIWKTH  324 (408)
Q Consensus       315 dg~i~iw~~~  324 (408)
                      +|.+.+|.+.
T Consensus       503 ~grv~l~kL~  512 (514)
T KOG2055|consen  503 AGRVHLFKLH  512 (514)
T ss_pred             CCceeeEeec
Confidence            9999999874

>KOG0646|consensus

Probab=99.97  E-value=5.3e-29  Score=198.78  Aligned_cols=264  Identities=19%  Similarity=0.256  Sum_probs=206.9

Q ss_pred             eEEEEeccCCeeEe-EEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            4 TVRLWHISRKECLC-CFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         4 ~i~vwd~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      .|.+|.+....... ..--.++|.+++-+| +|.+|+.|+..|.|++|.+.+|..+  ..+.+|-..|+++.|+-||.+|
T Consensus        62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL--~v~~aHYQ~ITcL~fs~dgs~i  138 (476)
T KOG0646|consen   62 LLHVWEILKKDQVVQYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILL--NVLSAHYQSITCLKFSDDGSHI  138 (476)
T ss_pred             cccccccCchhhhhhhcccccceeeeecCC-CceEEEeecccCcEEEEEeccccHH--HHHHhhccceeEEEEeCCCcEE
Confidence            46778887665555 333789999999999 9999999989999999999999987  6789999999999999999999


Q ss_pred             EEEecCCEEEEEeccCCeeeEE-EEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQ-IHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ++|+.||.|.+|.+...-.... ...........|.-+|+++...+.  ..++++++.|.++++||+..+..+..+... 
T Consensus       139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-  217 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-  217 (476)
T ss_pred             EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-
Confidence            9999999999998754221111 123333445677789999988764  468999999999999999999888776543 


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                        ..+.+++.+|.++.+++|+.+|.|.+.++..-                  .+.                         
T Consensus       218 --~si~av~lDpae~~~yiGt~~G~I~~~~~~~~------------------~~~-------------------------  252 (476)
T KOG0646|consen  218 --SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL------------------SGQ-------------------------  252 (476)
T ss_pred             --CcceeEEEcccccEEEecCCcceEEeeehhcC------------------Ccc-------------------------
Confidence              44778999999999999999999999887431                  000                         


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                                                   +.+=..+.++.. +.....+.+|.+...|+|++++-||.+|++|+.||.|.
T Consensus       253 -----------------------------~~~v~~k~~~~~-~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc  302 (476)
T KOG0646|consen  253 -----------------------------SAGVNQKGRHEE-NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC  302 (476)
T ss_pred             -----------------------------cccccccccccc-cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence                                         011112233322 34455667777767899999999999999999999999


Q ss_pred             EeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          320 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       320 iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      |||+.+.            ++++++....++|+.+.+.|
T Consensus       303 vWdi~S~------------Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  303 VWDIYSK------------QCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             EEecchH------------HHHHHHhhhccccceeEeec
Confidence            9999886            56677766778899999866

>KOG1063|consensus

Probab=99.97  E-value=6.1e-27  Score=195.93  Aligned_cols=369  Identities=14%  Similarity=0.190  Sum_probs=263.1

Q ss_pred             CCceEEEEeccCC----eeEeEEE----eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeE
Q psy988            1 MDKTVRLWHISRK----ECLCCFQ----HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLIT   71 (408)
Q Consensus         1 ~Dg~i~vwd~~~~----~~~~~~~----h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~   71 (408)
                      +|.++.+|...+.    ...-.++    ..+.....-|+| +++.+++-+.-|-.++|..+. ..........+|...|+
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~  365 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK  365 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence            6899999987654    2222233    356789999999 999999999999999999332 33344456789999999


Q ss_pred             EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---
Q psy988           72 AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---  148 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---  148 (408)
                      .+.|.|.|.+|++.+.|.+-|+|-.-..+..    ........-|+..++|+++-+....+++|..+..+|+|+...   
T Consensus       366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~----wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQE----WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             eeeecCCCCEEEEeccccceeeecccccccc----eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence            9999999999999999999999876532221    334444556778999999998777888999899999998632   


Q ss_pred             -------c----------------------ccc--------------------------------------------eee
Q psy988          149 -------L----------------------NLS--------------------------------------------CKY  155 (408)
Q Consensus       149 -------~----------------------~~~--------------------------------------------~~~  155 (408)
                             +                      +..                                            .++
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                   0                      000                                            000


Q ss_pred             cCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      -+  +...+.+++.+|+++.+++++..     ..|++|+..+-            .....+.+|.-.|+.++|+||+++|
T Consensus       522 YG--HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------------~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  522 YG--HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------------LQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             cc--CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------------hhhheecccceEEEEEEECCCCcEE
Confidence            01  23447789999999999998754     36999998642            2334688999999999999999999


Q ss_pred             eeecCCCC-----------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--eeeeEEeeccceece
Q psy988          231 IAQMEPDK-----------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--NLSCKYKGYVNVSSQ  297 (408)
Q Consensus       231 ~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~v  297 (408)
                      ++...+..           ..........|.+-|....|+|++.++++++.|.+|++|.....  +.+..+........+
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV  667 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV  667 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCce
Confidence            88644332           11112235678899999999999999999999999999999887  444444434445578


Q ss_pred             eEEEEcC-----CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCC
Q psy988          298 IKASFSH-----DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  372 (408)
Q Consensus       298 ~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  372 (408)
                      +.+++.|     .+..+++|-+.|.|.+|.........+.........+....+|.+.|+.+.|.|...      .+..-
T Consensus       668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~------~~~~~  741 (764)
T KOG1063|consen  668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCS------DDWVE  741 (764)
T ss_pred             eeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccc------ccccc
Confidence            8888877     233788899999999999652211111111111122333456888999999998210      00011


Q ss_pred             CCcccEEEEEecCCeEEEEeCC
Q psy988          373 ESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       373 s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      +.....|++|+.|..+|++++.
T Consensus       742 ~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  742 DKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccceeEEeeecccceeEEeecc
Confidence            1134567999999999999875

>KOG0264|consensus

Probab=99.97  E-value=2.7e-28  Score=194.22  Aligned_cols=270  Identities=16%  Similarity=0.261  Sum_probs=200.5

Q ss_pred             eecCCceeeEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEE--EEeeccccccCCCCeEEEeeCCC-CCeEEEeeC
Q psy988           62 EVEGQTKLITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQI--HVRSTRGKNATGRKISGIEPMPG-EDKILVTSN  137 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  137 (408)
                      ....|.+.|+.+.+-|.. ..+++.+..+.+.|||..+.......  .........+|...-.+++|++. ...|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            345688899999998865 45667788899999998764433221  11111122344445677899885 447888999


Q ss_pred             CCeEEEEEccCccc-------ceeecCccccccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCcccc
Q psy988          138 DSRIRLYDLRDLNL-------SCKYKGYVNVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  209 (408)
Q Consensus       138 dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (408)
                      |+.|++||+.....       ...+.+|..  .+..++|++- ...|++++.|+.+.|||+++.          ..++..
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~--~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~----------~~~~~~  266 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHED--VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN----------TSKPSH  266 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCc--ceehhhccccchhhheeecCCCeEEEEEcCCC----------CCCCcc
Confidence            99999999975432       233455544  3678899884 456888999999999999852          123445


Q ss_pred             ccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe-eeeEE
Q psy988          210 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKY  288 (408)
Q Consensus       210 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~  288 (408)
                      ....|...+.|++|+|-+..+                                  ||+|+.|++|++||+++.+ ++.++
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~i----------------------------------lAT~S~D~tV~LwDlRnL~~~lh~~  312 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEFI----------------------------------LATGSADKTVALWDLRNLNKPLHTF  312 (422)
T ss_pred             cccccCCceeEEEeCCCCCce----------------------------------EEeccCCCcEEEeechhcccCceec
Confidence            667888899999998876665                                  7999999999999999864 56677


Q ss_pred             eeccceeceeEEEEcCC-CCEEEEecCCceEEEeeccccCcccc--ccccCccccceeeeeeccceEEEEecCCchhhhh
Q psy988          289 KGYVNVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFS--SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  365 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  365 (408)
                      .+|..  .|.++.|||+ ...||+++.|+.+.+||+..-....+  ......++++-.-.||...|..+.|+|.      
T Consensus       313 e~H~d--ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~------  384 (422)
T KOG0264|consen  313 EGHED--EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN------  384 (422)
T ss_pred             cCCCc--ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC------
Confidence            77766  8899999996 45788899999999999986433322  1223344566667799999999999995      


Q ss_pred             ccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          366 QMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       366 ~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                               ....++|++.|+.+.||++.
T Consensus       385 ---------ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  385 ---------EPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ---------CCeEEEEecCCceEEEeecc
Confidence                     56788999999999999987

>KOG0321|consensus

Probab=99.96  E-value=1.2e-27  Score=198.30  Aligned_cols=303  Identities=15%  Similarity=0.196  Sum_probs=215.1

Q ss_pred             EEEcC--CCCCEEEEEeCCCcEEEEecCCCCce----eeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           28 ICFHP--RDDRYFLSGSLDGKLRLWNIPDKKVA----VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        28 ~~~sp--~~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      ..|++  ....+|+.+.+||.|.++|.......    .+.....|...|..+.|.|....|++++.|.++++||+.+...
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            56665  24568999999999999998764433    1245678999999999999777899999999999999998775


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccce-------ee---cC-------------
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSC-------KY---KG-------------  157 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-------~~---~~-------------  157 (408)
                      ....      ...+|.+.|.+++|.|.+. .|++|+.||.|.|||++-.....       .+   .+             
T Consensus       135 ~G~~------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  135 VGGR------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             ecce------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            4332      2346778999999999655 67788999999999997432100       00   00             


Q ss_pred             --ccccccceE---EEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          158 --YVNVSSQIK---ASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       158 --~~~~~~~~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                        ......+.+   +.+..|...|++++. |+.|++||++..+..+........    .+..+.                
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~----~~~t~s----------------  268 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD----KYPTHS----------------  268 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc----CccCcc----------------
Confidence              001111222   556778889998887 999999999876655432221111    111110                


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeeccceeceeEEEEcCCCCEE
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l  309 (408)
                                      .....+.++.....|.+|++.+.|+.|++|++.+..  ++..+.++.....-..-..+||+.++
T Consensus       269 ----------------krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  269 ----------------KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             ----------------cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence                            112234555555666777777889999999998643  44455555444334455789999999


Q ss_pred             EEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEE
Q psy988          310 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR  389 (408)
Q Consensus       310 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  389 (408)
                      ++|+.|...++|.+....           .....+.+|.-.|++++|.|.               .-.-++++++|..++
T Consensus       333 ~SgSsd~~ayiw~vs~~e-----------~~~~~l~Ght~eVt~V~w~pS---------------~~t~v~TcSdD~~~k  386 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPE-----------APPALLLGHTREVTTVRWLPS---------------ATTPVATCSDDFRVK  386 (720)
T ss_pred             eccCCCcceeeeeecCcc-----------CChhhhhCcceEEEEEeeccc---------------cCCCceeeccCcceE
Confidence            999999999999998763           345567899999999999993               334577779999999


Q ss_pred             EEeCCCCCC
Q psy988          390 VFLNKTKPK  398 (408)
Q Consensus       390 iw~~~~~~~  398 (408)
                      ||++..+-.
T Consensus       387 iW~l~~~l~  395 (720)
T KOG0321|consen  387 IWRLSNGLE  395 (720)
T ss_pred             EEeccCchh
Confidence            999966543

>KOG0639|consensus

Probab=99.96  E-value=1e-28  Score=199.18  Aligned_cols=263  Identities=15%  Similarity=0.203  Sum_probs=196.7

Q ss_pred             cCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988           64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        64 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  143 (408)
                      -.|..-|.++.++...+++++|+ .|.|+|||+..........  .+.. ......|.++...||++.|++|++-.++.|
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvs--qLdc-l~rdnyiRSckL~pdgrtLivGGeastlsi  491 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVS--QLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTLSI  491 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccc--cccc-cCcccceeeeEecCCCceEEeccccceeee
Confidence            35888899999999999999986 5789999998653222111  1111 112357999999999999999999999999


Q ss_pred             EEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          144 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       144 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ||+....+....+.......+..++.+||.+..+++..||.|.|||+.+.            ..++.+.+|...+.|+.+
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------------~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------------eeeecccCCCCCceeEEe
Confidence            99987654433333333344667899999999999999999999999753            445667777777666666


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  303 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s  303 (408)
                      +++                                   |..|-+|+-|.+||.||+++++.+...   .-...|.++.++
T Consensus       560 s~d-----------------------------------GtklWTGGlDntvRcWDlregrqlqqh---dF~SQIfSLg~c  601 (705)
T KOG0639|consen  560 SKD-----------------------------------GTKLWTGGLDNTVRCWDLREGRQLQQH---DFSSQIFSLGYC  601 (705)
T ss_pred             cCC-----------------------------------CceeecCCCccceeehhhhhhhhhhhh---hhhhhheecccC
Confidence            555                                   555688999999999999998766543   334578899999


Q ss_pred             CCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC-------------
Q psy988          304 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD-------------  370 (408)
Q Consensus       304 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-------------  370 (408)
                      |++.+|++|-+++.+.+......             ....+.-|++.|.++.|.+-|+|+++...++             
T Consensus       602 P~~dWlavGMens~vevlh~skp-------------~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi  668 (705)
T KOG0639|consen  602 PTGDWLAVGMENSNVEVLHTSKP-------------EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  668 (705)
T ss_pred             CCccceeeecccCcEEEEecCCc-------------cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence            99999999999999999887653             3445677999999999999666666555554             


Q ss_pred             ------------CCCCcccEEEEEecCCeEEEEeC
Q psy988          371 ------------KSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       371 ------------~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                                  .+|.|.++++||+.|....||.+
T Consensus       669 FqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  669 FQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                        44556666666666655555543

>KOG0641|consensus

Probab=99.96  E-value=1.5e-26  Score=167.97  Aligned_cols=253  Identities=17%  Similarity=0.201  Sum_probs=190.9

Q ss_pred             CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee------E-EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC
Q psy988           65 GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH------T-QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN  137 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  137 (408)
                      .....|.+++|+|.|.+.++|+...+++|-........      . ............|.+.|.|.+|+|+|..+++|++
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            35678999999999999999999999988654321110      0 0111112233567889999999999999999999


Q ss_pred             CCeEEEEEccCcccc-----eeecCccccccceEEEEecC----CCEEEEee-cCceEEEeeeccceeeeeecccCCCcc
Q psy988          138 DSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASFSHD----GKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDF  207 (408)
Q Consensus       138 dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (408)
                      |.+|++...+...+.     ..+..|  ...+..++|-.+    +..|++++ .|..|++-|...            ++.
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmh--dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~------------g~~  175 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMH--DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR------------GQG  175 (350)
T ss_pred             CceEEEEecccccccccCcceeeeec--CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC------------CCc
Confidence            999999876543322     123333  344778888543    44566654 466777777754            344


Q ss_pred             ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE
Q psy988          208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK  287 (408)
Q Consensus       208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  287 (408)
                      +..+.+|.+.|.++-                                    +-++-.+++|+.|.+|++||++-..++.+
T Consensus       176 ~~a~sghtghilaly------------------------------------swn~~m~~sgsqdktirfwdlrv~~~v~~  219 (350)
T KOG0641|consen  176 FHALSGHTGHILALY------------------------------------SWNGAMFASGSQDKTIRFWDLRVNSCVNT  219 (350)
T ss_pred             ceeecCCcccEEEEE------------------------------------EecCcEEEccCCCceEEEEeeeccceeee
Confidence            566677776665542                                    22456789999999999999998888877


Q ss_pred             Eeecc-----ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchh
Q psy988          288 YKGYV-----NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  362 (408)
Q Consensus       288 ~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  362 (408)
                      +....     ....|.+++..|.|++|++|-.|....+||++.+            .+++.+..|...|.++.|+|    
T Consensus       220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~------------r~iq~f~phsadir~vrfsp----  283 (350)
T KOG0641|consen  220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG------------RMIQRFHPHSADIRCVRFSP----  283 (350)
T ss_pred             ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC------------ceeeeeCCCccceeEEEeCC----
Confidence            65322     2256889999999999999999999999999988            78899999999999999999    


Q ss_pred             hhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          363 IIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       363 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                                  ...++++++.|..|++=|++.
T Consensus       284 ------------~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  284 ------------GAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ------------CceEEEEecccceEEEeeccc
Confidence                        889999999999999999874

>KOG1332|consensus

Probab=99.96  E-value=8.9e-28  Score=176.07  Aligned_cols=269  Identities=13%  Similarity=0.148  Sum_probs=203.0

Q ss_pred             eecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCCC
Q psy988           62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSNDS  139 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg  139 (408)
                      ....|...|..+...-.|++|++++.|++|+|+.++......     ......+|.++|..++|..  .|..|++++.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~-----ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK-----LLAELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce-----eeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            345688888888888889999999999999999998776422     2223456788999999976  789999999999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccce
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  217 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (408)
                      .|.||.-++++-.+......+...+.+++|.|.  |-.|++++.||.|.+++.+...         .....+....|.-.
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---------~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---------GWTTSKIVFAHEIG  151 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---------Cccchhhhhccccc
Confidence            999999988865555544445566889999885  4678999999999999987641         11122345678888


Q ss_pred             EEEEEEeCC---cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeecc
Q psy988          218 VTCAVFAPC---PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGYV  292 (408)
Q Consensus       218 v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~  292 (408)
                      |+++.|.|-   |..+-                 ++       ....-+.|++|+.|..|+||+..+++  +.+.+.+|.
T Consensus       152 vnsVswapa~~~g~~~~-----------------~~-------~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~  207 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVD-----------------QG-------PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK  207 (299)
T ss_pred             cceeeecCcCCCccccc-----------------cC-------cccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence            999999885   22210                 00       00012568999999999999988753  445577776


Q ss_pred             ceeceeEEEEcCCC----CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988          293 NVSSQIKASFSHDG----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       293 ~~~~v~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                      .  .+..++|.|.-    .+||+++.||++.||.......+.         ....+......+..+.||+          
T Consensus       208 d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w---------k~tll~~f~~~~w~vSWS~----------  266 (299)
T KOG1332|consen  208 D--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW---------KKTLLEEFPDVVWRVSWSL----------  266 (299)
T ss_pred             h--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc---------cccccccCCcceEEEEEec----------
Confidence            6  88999999964    479999999999999987432221         1122334567899999999          


Q ss_pred             CCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          369 PDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                            .|++|+.++.|+.|.+|.-..
T Consensus       267 ------sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  267 ------SGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ------cccEEEEecCCcEEEEEEeCC
Confidence                  999999999999999998653

>KOG0300|consensus

Probab=99.96  E-value=1.9e-27  Score=181.25  Aligned_cols=265  Identities=18%  Similarity=0.371  Sum_probs=206.5

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEec------CC--------------------
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI------PD--------------------   54 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~------~~--------------------   54 (408)
                      |.+-+||.++++.|+..+. |.+.|+++.|++ .+.++++++.|++-.||..      ..                    
T Consensus       169 DhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~  247 (481)
T KOG0300|consen  169 DHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN  247 (481)
T ss_pred             ccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence            7889999999999999987 999999999999 9999999999999999983      10                    


Q ss_pred             ----------C--CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           55 ----------K--KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        55 ----------~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                                +  -..++..+.+|...|.+..|...|+.+++++.|.+..+||+++++....+        .+|....+.
T Consensus       248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L--------tGHd~ELtH  319 (481)
T KOG0300|consen  248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL--------TGHDSELTH  319 (481)
T ss_pred             cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc--------cCcchhccc
Confidence                      0  01234578899999999999999999999999999999999998765443        356678899


Q ss_pred             EeeCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecc
Q psy988          123 IEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (408)
                      ++-+|..+.+++++.|.+.++||.+.. ..+..|++|...  +.+..|..+. .+++|+.|.+|++||+++.....    
T Consensus       320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt--VTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRspl----  392 (481)
T KOG0300|consen  320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT--VTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPL----  392 (481)
T ss_pred             cccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--eeEEEEecCC-ceeecCCCceEEEeeeccccCcc----
Confidence            999999999999999999999999843 234567887765  7788888765 58999999999999997532211    


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  281 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  281 (408)
                                       ..+                          ....++..++++..+..|+.--.+..|++||+..
T Consensus       393 -----------------ATI--------------------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  393 -----------------ATI--------------------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             -----------------eee--------------------------ecCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence                             111                          1223445555566666778888889999999985


Q ss_pred             CeeeeEEe---eccceeceeEEEEcCCC--CEEEEecCCceEEEeecccc
Q psy988          282 LNLSCKYK---GYVNVSSQIKASFSHDG--KYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       282 ~~~~~~~~---~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .++ ..++   ...+...|.|++|..+-  .-|++++.|..+.-|+++..
T Consensus       430 ~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  430 NRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             Ccc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            443 3332   11233478899997653  34778899999999998763

>KOG2445|consensus

Probab=99.96  E-value=1.8e-26  Score=174.90  Aligned_cols=279  Identities=14%  Similarity=0.213  Sum_probs=182.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC--CCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEec
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD--KKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTT   96 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~   96 (408)
                      |.+-|+++.|.+ -|+.+|||+.|++|+|||..+  +........+.|.+.|..+.|.+  -|+.+|+++.|+++.||.-
T Consensus        12 h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   12 HKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             Ccceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            899999999999 999999999999999999644  44444567889999999999965  4999999999999999987


Q ss_pred             cCCeeeEEE-EEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           97 DQLKYHTQI-HVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        97 ~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      ......... .-..........+.|+++.|.|.  |-.|++++.||.+|||+....-.+..........    ....|-+
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~----~~~~pp~  166 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ----NVIDPPG  166 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh----hccCCcc
Confidence            422211100 01111112233468999999994  6678899999999999876533322221111100    0001111


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      +.                                       ..+..|+.|+|...                         
T Consensus       167 ~~---------------------------------------~~~~~CvsWn~sr~-------------------------  182 (361)
T KOG2445|consen  167 KN---------------------------------------KQPCFCVSWNPSRM-------------------------  182 (361)
T ss_pred             cc---------------------------------------cCcceEEeeccccc-------------------------
Confidence            10                                       01112222221100                         


Q ss_pred             eeeccCCCCCeEEEecCC-----CeEEEEEcCCCe----eeeEEeeccceeceeEEEEcCC----CCEEEEecCCceEEE
Q psy988          254 SGIEPMPGEDKILVTSND-----SRIRLYDLRDLN----LSCKYKGYVNVSSQIKASFSHD----GKYIVSGSENQCIYI  320 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~i  320 (408)
                             ...+|++|+.+     +.++||......    .+.++.++  ..+|++++|.|+    -.+||+++.|| |+|
T Consensus       183 -------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I  252 (361)
T KOG2445|consen  183 -------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--TDPIRDISWAPNIGRSYHLLAVATKDG-VRI  252 (361)
T ss_pred             -------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC--CCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence                   01234444433     456666654322    23334444  448999999995    34789999999 999


Q ss_pred             eeccccCccc--------cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          321 WKTHHDYAKF--------SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       321 w~~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      |.+.......        ..+.+-..+.+..+..|.+.|..+.|+-                .|..|++.|.||+||+|.
T Consensus       253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm----------------tGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM----------------TGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee----------------eeeEEeecCCCceeeehh
Confidence            9998533211        1112223355667889999999999999                899999999999999997


Q ss_pred             CC
Q psy988          393 NK  394 (408)
Q Consensus       393 ~~  394 (408)
                      ..
T Consensus       317 an  318 (361)
T KOG2445|consen  317 AN  318 (361)
T ss_pred             hh
Confidence            54

>KOG0650|consensus

Probab=99.96  E-value=9.8e-27  Score=191.65  Aligned_cols=296  Identities=14%  Similarity=0.200  Sum_probs=212.8

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE--EEEEecCCEEEEEecc
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF--AVVGSYDGRCIFYTTD   97 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iw~~~   97 (408)
                      +|++.|.++...| .|.+|++|+.||+|+||.+.++.++....+.   +.|.+++|+|.+..  ||++- ...+.|.+..
T Consensus       398 GHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~  472 (733)
T KOG0650|consen  398 GHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAV-GECVLIVNPI  472 (733)
T ss_pred             ccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEe-cCceEEeCcc
Confidence            4999999999999 9999999999999999999999988433443   46999999997653  44443 3345555432


Q ss_pred             CCeee---------EEE-------------E-------EeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEE
Q psy988           98 QLKYH---------TQI-------------H-------VRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYD  145 (408)
Q Consensus        98 ~~~~~---------~~~-------------~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d  145 (408)
                      -+...         ...             .       .......-.|...|..+.|+..|.+|++...   ...|.|.+
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence            22100         000             0       0000111235678999999999999998744   45799999


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      +........|....  ..+.++.|+|...+|++++. ..|++||+...            ..++.+.....         
T Consensus       553 LSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq------------elvKkL~tg~k---------  608 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ------------ELVKKLLTGSK---------  608 (733)
T ss_pred             cccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH------------HHHHHHhcCCe---------
Confidence            97766554443332  44778999999999998876 57999998542            22333333333         


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcC
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~  304 (408)
                                                .|..++++|.|..|+.++.|+.+..||+.-. ++.+++..|..  .+++++|++
T Consensus       609 --------------------------wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--avr~Va~H~  660 (733)
T KOG0650|consen  609 --------------------------WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AVRSVAFHK  660 (733)
T ss_pred             --------------------------eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hhhhhhhcc
Confidence                                      4455556666777889999999999999754 56666776655  788999999


Q ss_pred             CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccc----eEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988          305 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV----VTCAVFAPCPELIIAQMEPDKSESTGYVLV  380 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  380 (408)
                      .-.++++|+.||++.|+.-.-..   ..++.+.--++..+++|...    |..+.|+|                ..-+|+
T Consensus       661 ryPLfas~sdDgtv~Vfhg~VY~---Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP----------------~qpWLf  721 (733)
T KOG0650|consen  661 RYPLFASGSDDGTVIVFHGMVYN---DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP----------------RQPWLF  721 (733)
T ss_pred             ccceeeeecCCCcEEEEeeeeeh---hhhcCCceEeeeeccCceeecccceEeecccC----------------CCceEE
Confidence            99999999999999998643211   01122223566778888865    89999999                888999


Q ss_pred             EEecCCeEEEE
Q psy988          381 SADFNGVIRVF  391 (408)
Q Consensus       381 s~~~dg~v~iw  391 (408)
                      ++|.||+|++|
T Consensus       722 sAGAd~tirlf  732 (733)
T KOG0650|consen  722 SAGADGTIRLF  732 (733)
T ss_pred             ecCCCceEEee
Confidence            99999999998

>KOG4328|consensus

Probab=99.96  E-value=2.2e-26  Score=183.48  Aligned_cols=308  Identities=16%  Similarity=0.189  Sum_probs=216.0

Q ss_pred             eccCCeeEeEEE-eCCceEEEEEcCCCC-CEEEEEeCCCcEEEEecCCCC--ceeeeeecCCceeeEEEEEecC-CCEEE
Q psy988            9 HISRKECLCCFQ-HIDFVTAICFHPRDD-RYFLSGSLDGKLRLWNIPDKK--VAVWNEVEGQTKLITAANFCEN-GKFAV   83 (408)
Q Consensus         9 d~~~~~~~~~~~-h~~~v~~~~~sp~~~-~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~   83 (408)
                      |+.+-....... |.+.|++++|+|... +++|+|..-|.|-+||+.+.+  ......+..|..+|.++.|+|. ...++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            333344445555 899999999999544 688888889999999995322  2223567789999999999994 56799


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceeecCccccc
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVS  162 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~  162 (408)
                      +.+.||+|++-|+++..........      .....+..+.|+.+...++.+..=|...+||++++.. ...+..|..  
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--  323 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLD------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--  323 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcC------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--
Confidence            9999999999999875432222111      1223677888888888888888878999999998765 333444444  


Q ss_pred             cceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          163 SQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       163 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      .|.+++++|.. .+|++++.|++.+|||++.-..+                  ..+                        
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K------------------~sp------------------------  361 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK------------------ASP------------------------  361 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCC------------------CCc------------------------
Confidence            48899999955 56899999999999999752211                  110                        


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC----CCeeeeEEeec---cceeceeEEEEcCCCCEEEEecC
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR----DLNLSCKYKGY---VNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                       ......|...|.+..|||.+..|++.+.|..|+|||..    ...+...+...   ..........|.|+..++++|..
T Consensus       362 -~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  362 -FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             -ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc
Confidence             01112566667777777777778999999999999984    23333333211   12223456799999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeec-cceEE-EEecCCchhhhhccCCCCCCCccc-EEEEEecCCeEEEE
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN-AVVTC-AVFAPCPELIIAQMEPDKSESTGY-VLVSADFNGVIRVF  391 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~-~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iw  391 (408)
                      -..|-|+|-+.+            +.+..+.... ..|.+ ..|+|                -+. +++-++.-|.|+||
T Consensus       441 ~r~IDv~~~~~~------------q~v~el~~P~~~tI~~vn~~HP----------------~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  441 PRPIDVFDGNGG------------QMVCELHDPESSTIPSVNEFHP----------------MRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             CcceeEEcCCCC------------EEeeeccCccccccccceeecc----------------cccceeccCCccceEEEE
Confidence            999999998876            3344433222 24444 47999                666 44455568899999


Q ss_pred             eCCC
Q psy988          392 LNKT  395 (408)
Q Consensus       392 ~~~~  395 (408)
                      .-+.
T Consensus       493 t~k~  496 (498)
T KOG4328|consen  493 TNKK  496 (498)
T ss_pred             ecCC
Confidence            7654

>KOG0301|consensus

Probab=99.96  E-value=1.5e-26  Score=193.73  Aligned_cols=252  Identities=18%  Similarity=0.329  Sum_probs=201.6

Q ss_pred             CceEEEEeccCCeeEeE--E-EeCCceEE-EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISRKECLCC--F-QHIDFVTA-ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~--~-~h~~~v~~-~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      ||++++|+-..++.+..  + +|.+.|.. +++-+.++..|++|+.|.+|.+|........  ..+.+|...|.+++...
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~LkgH~snVC~ls~~~  111 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLKGHKSNVCSLSIGE  111 (745)
T ss_pred             CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhhccccceeeeecCC
Confidence            89999999877766552  3 38888877 8888645667999999999999999887765  79999999999999888


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ++. +++||.|.++++|........          ..+|...|.+++..|.+ .+++|+.|..|++|.-  ++.++++.+
T Consensus       112 ~~~-~iSgSWD~TakvW~~~~l~~~----------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g  177 (745)
T KOG0301|consen  112 DGT-LISGSWDSTAKVWRIGELVYS----------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG  177 (745)
T ss_pred             cCc-eEecccccceEEecchhhhcc----------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc
Confidence            877 999999999999987654332          35677899999999977 8999999999999986  677889999


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |...  |..+++-+++ .|++++.||.|++|++..             ..+..+.+|..-+.++..              
T Consensus       178 HtD~--VRgL~vl~~~-~flScsNDg~Ir~w~~~g-------------e~l~~~~ghtn~vYsis~--------------  227 (745)
T KOG0301|consen  178 HTDC--VRGLAVLDDS-HFLSCSNDGSIRLWDLDG-------------EVLLEMHGHTNFVYSISM--------------  227 (745)
T ss_pred             chhh--eeeeEEecCC-CeEeecCCceEEEEeccC-------------ceeeeeeccceEEEEEEe--------------
Confidence            8765  7788888765 488999999999999842             344555666666666653              


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                           ..+++.++++++|+++++|+..  ++.+.+..+..  .+.++.+-++|. |++|+.||.
T Consensus       228 ---------------------~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~  281 (745)
T KOG0301|consen  228 ---------------------ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGR  281 (745)
T ss_pred             ---------------------cCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCce
Confidence                                 3445668899999999999976  66666654333  677888887776 567778999


Q ss_pred             EEEeeccc
Q psy988          318 IYIWKTHH  325 (408)
Q Consensus       318 i~iw~~~~  325 (408)
                      ||||....
T Consensus       282 VrVfT~~k  289 (745)
T KOG0301|consen  282 VRVFTVDK  289 (745)
T ss_pred             EEEEEecc
Confidence            99999774

>KOG0321|consensus

Probab=99.95  E-value=1.3e-26  Score=192.21  Aligned_cols=311  Identities=14%  Similarity=0.182  Sum_probs=212.1

Q ss_pred             CceEEEEeccCCeeE------eEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            2 DKTVRLWHISRKECL------CCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~------~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      ||.|.++|.......      +.. -|.+.|..+.|-| ....|++++.|.++++||++...+.-...+.+|.+.|.+++
T Consensus        73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c  151 (720)
T KOG0321|consen   73 DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSEC  151 (720)
T ss_pred             CCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhh
Confidence            788999998654332      222 2999999999999 99999999999999999999988876566899999999999


Q ss_pred             EecC-CCEEEEEecCCEEEEEeccCCeee-------------------EEEEEeeccccccCCCCeEE---EeeCCCCCe
Q psy988           75 FCEN-GKFAVVGSYDGRCIFYTTDQLKYH-------------------TQIHVRSTRGKNATGRKISG---IEPMPGEDK  131 (408)
Q Consensus        75 ~~~~-~~~l~~~~~dg~i~iw~~~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~  131 (408)
                      |.|. ...|++|+.||.|.|||++-....                   .............+...|..   +.+..|+..
T Consensus       152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence            9995 457889999999999998743310                   00001111222344445555   666678999


Q ss_pred             EEEeeC-CCeEEEEEccCcccceee------cCcc---ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecc
Q psy988          132 ILVTSN-DSRIRLYDLRDLNLSCKY------KGYV---NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       132 l~~~~~-dg~i~i~d~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (408)
                      |++++. |+.|++||+++.......      .-+.   ....+.++.....|.+|++.+.|+.|++|++.....      
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~------  305 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI------  305 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc------
Confidence            999887 999999999875543221      1111   133456677788889999999999999999864211      


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  281 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  281 (408)
                          .+...+.++...                                 ..-..-..+|++.++++|+.|...++|.+.+
T Consensus       306 ----sP~~~~sg~~~~---------------------------------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  306 ----SPVAEFSGKLNS---------------------------------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             ----CchhhccCcccc---------------------------------eeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence                111111111100                                 0111224578899999999999999999987


Q ss_pred             Ceee-eEEeeccceeceeEEEEcCCC-CEEEEecCCceEEEeeccccCcccccccc--CccccceeeeeeccceEEEEec
Q psy988          282 LNLS-CKYKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRR--DRNDFWEGIKAHNAVVTCAVFA  357 (408)
Q Consensus       282 ~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~  357 (408)
                      .+.. ..+.+|..  .|++++|.|.. .-++++++|..++||++..+......-.+  ........+.+|...+..+.++
T Consensus       349 ~e~~~~~l~Ght~--eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss  426 (720)
T KOG0321|consen  349 PEAPPALLLGHTR--EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSS  426 (720)
T ss_pred             ccCChhhhhCcce--EEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccc
Confidence            6543 34556554  77888888732 34667799999999999766443211111  1112334456666666666665


Q ss_pred             C
Q psy988          358 P  358 (408)
Q Consensus       358 ~  358 (408)
                      -
T Consensus       427 ~  427 (720)
T KOG0321|consen  427 L  427 (720)
T ss_pred             c
Confidence            4

>KOG1445|consensus

Probab=99.95  E-value=4.8e-26  Score=189.26  Aligned_cols=131  Identities=18%  Similarity=0.283  Sum_probs=104.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee----eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEec
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW----NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT   96 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~   96 (408)
                      |.+.|+.+.|+|....+||||+.|..|+||.+..+-...+    ..+.+..-.|.++.|+|...-|+..+..|+++|||+
T Consensus        78 H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~  157 (1012)
T KOG1445|consen   78 HGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDI  157 (1012)
T ss_pred             ccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEc
Confidence            9999999999998888999999999999999985432211    234445667899999998776777778899999999


Q ss_pred             cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-cccceeecCcc
Q psy988           97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYV  159 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~  159 (408)
                      .+.+.....        .+|...|.++.|+.||..|++++.|..|+|||.+. ++.++..++|.
T Consensus       158 stqk~~~el--------~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~  213 (1012)
T KOG1445|consen  158 STQKTAVEL--------SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG  213 (1012)
T ss_pred             ccCceeecc--------cCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence            987654433        36678999999999999999999999999999875 34444444443

>KOG0269|consensus

Probab=99.95  E-value=1.8e-26  Score=195.51  Aligned_cols=294  Identities=15%  Similarity=0.212  Sum_probs=213.6

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee--c---CCceeeEEEEEec-CCCEEEEEecCCEEEEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV--E---GQTKLITAANFCE-NGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw   94 (408)
                      -+....++...+ +-..++.++. ..++||.+...........  .   ...-.+..+.|.. +.++||+++..|.|.+|
T Consensus        38 ~k~~~nAIs~nr-~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   38 LKAKANAISVNR-DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccccceEeecC-CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            456678888888 7777887776 5788888765432211111  1   1123456677764 46889999999999999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec-C
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-D  172 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~  172 (408)
                      |+.....     .........|...+.++.|++.. .+|++|+.||.|++||++..+...++.+..  ..+..+.|+| .
T Consensus       116 dlnk~~r-----nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS--ESiRDV~fsp~~  188 (839)
T KOG0269|consen  116 DLNKSIR-----NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS--ESIRDVKFSPGY  188 (839)
T ss_pred             ecCcccc-----chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc--hhhhceeeccCC
Confidence            9986311     11222234577899999999854 577889999999999999988887777743  4588899999 5


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      +.+|+++.+.|.+++||++..           ..+...+..|.++|.|+.|+|                           
T Consensus       189 ~~~F~s~~dsG~lqlWDlRqp-----------~r~~~k~~AH~GpV~c~nwhP---------------------------  230 (839)
T KOG0269|consen  189 GNKFASIHDSGYLQLWDLRQP-----------DRCEKKLTAHNGPVLCLNWHP---------------------------  230 (839)
T ss_pred             CceEEEecCCceEEEeeccCc-----------hhHHHHhhcccCceEEEeecC---------------------------
Confidence            678999999999999999743           334455566666666666555                           


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE-EEEec--CCceEEEeeccccCcc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGS--ENQCIYIWKTHHDYAK  329 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iw~~~~~~~~  329 (408)
                              ++.+||+|+.|++|+|||+.+.+......-+ ...++.++.|-|..++ ||+++  .|-.|+|||+....  
T Consensus       231 --------nr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--  299 (839)
T KOG0269|consen  231 --------NREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--  299 (839)
T ss_pred             --------CCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc--
Confidence                    4566899999999999999876544333322 2347889999997664 66655  47799999998764  


Q ss_pred             ccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          330 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                               -+...+..|...++.++|...               |...|.+++.||+|..-.++..
T Consensus       300 ---------IP~~t~~eH~~~vt~i~W~~~---------------d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  300 ---------IPYATFLEHTDSVTGIAWDSG---------------DRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ---------ccceeeeccCccccceeccCC---------------CceeeEeecCccHHHHhhhhcc
Confidence                     355678889999999999763               6678889999998876655544

>KOG0267|consensus

Probab=99.95  E-value=1.4e-27  Score=200.68  Aligned_cols=257  Identities=16%  Similarity=0.274  Sum_probs=206.7

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      ...+++....+-.+++|+.+        ....|...+.++..-..++.+++|+.|-.+-+|.+........        .
T Consensus         3 ~~~~~m~~~~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------~   66 (825)
T KOG0267|consen    3 GMEFLMKTKRATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------L   66 (825)
T ss_pred             cccccceeeeeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe--------e
Confidence            44455566666677888753        3445777788888777788999999999999999877655443        3


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988          114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                      .+|..+|.++.|++....|++|+.+|+|++||++..+.++++.+|...  +.++.|+|-+.+++.|+.|+.+.+||.+..
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeeccceEEeccccccccceehhhhcc
Confidence            467789999999999999999999999999999999999999887765  778999999999999999999999999632


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCe
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSR  273 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  273 (408)
                                  .+...+.+                                   |...+..+.|+|+|++++.++.|..
T Consensus       145 ------------Gc~~~~~s-----------------------------------~~~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  145 ------------GCSHTYKS-----------------------------------HTRVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             ------------CceeeecC-----------------------------------CcceeEEEeecCCCceeeccCCcce
Confidence                        12223333                                   4444555666667777899999999


Q ss_pred             EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEE
Q psy988          274 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  353 (408)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  353 (408)
                      ++|||+..|+....|..|..  .+..+.|+|..-++++|+.|++|++||+++-            +.+.........|.+
T Consensus       178 vki~d~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------------e~I~s~~~~~~~v~~  243 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------------EVISSGKPETDGVRS  243 (825)
T ss_pred             eeeecccccccccccccccc--cccccccCchhhhhccCCCCceeeeecccee------------EEeeccCCccCCcee
Confidence            99999999999999998766  6778889999999999999999999999865            455555666788999


Q ss_pred             EEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988          354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                      ++|+|                +++.+++|..+
T Consensus       244 ~~fn~----------------~~~~~~~G~q~  259 (825)
T KOG0267|consen  244 LAFNP----------------DGKIVLSGEQI  259 (825)
T ss_pred             eeecC----------------CceeeecCchh
Confidence            99999                66666666544

>KOG4378|consensus

Probab=99.95  E-value=1.1e-25  Score=181.64  Aligned_cols=284  Identities=15%  Similarity=0.212  Sum_probs=211.0

Q ss_pred             ceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEE--eCCCcEEEEecCCC--CceeeeeecCCceeeEEEEE
Q psy988            3 KTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSG--SLDGKLRLWNIPDK--KVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~--~~dg~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~   75 (408)
                      .++++||....+....+-   -.-.+.++.|+. .. .|+++  +.|..|++|.-...  ++.....+.+.  .-.|++.
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~-~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~   87 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQR-RN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC   87 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccc-cc-eEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh
Confidence            368999998766655554   223489999997 44 35544  45788999975443  23322333333  3344554


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      .....++++|+..+.|+|||++....+        +....|...|+++.++-...+|++++..|.|.+..+.++.....+
T Consensus        88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~h--------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   88 ASQSLYEISGGQSGCVKIWDLRAKLIH--------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             hhcceeeeccCcCceeeehhhHHHHHh--------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence            455589999999999999999853322        223456689999999999999999999999999999988776666


Q ss_pred             cCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          156 KGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      ....+ ..+.-+.|+|..++ |.+++.+|.|.+||.....           ........|..+...++|+|..+.+    
T Consensus       160 ~~~sg-qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----------p~~~~~~~HsAP~~gicfspsne~l----  223 (673)
T KOG4378|consen  160 TIDSG-QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----------PIFHASEAHSAPCRGICFSPSNEAL----  223 (673)
T ss_pred             ecCCC-CeEEEeecccccceeeEeeccCCeEEEEeccCCC-----------cccchhhhccCCcCcceecCCccce----
Confidence            55433 34557889998776 5578899999999996432           2223345667777777777765554    


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                                    |++.+.|.+|.+||....+....+..   ..+...++|+++|.+|++|+.
T Consensus       224 ------------------------------~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  224 ------------------------------LVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             ------------------------------EEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecC
Confidence                                          67889999999999997776655543   226778999999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      .|.|..||++...           .++..+..|...|++++|-|
T Consensus       271 ~G~~i~YD~R~~k-----------~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  271 KGELIAYDMRSTK-----------APVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             CceEEEEecccCC-----------CCceEeeecccceeEEEeee
Confidence            9999999998753           57788899999999999988

>KOG4283|consensus

Probab=99.94  E-value=1.4e-24  Score=163.86  Aligned_cols=219  Identities=16%  Similarity=0.239  Sum_probs=169.1

Q ss_pred             ecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccCCeee-------EEEEEeeccccccCCCCeEEEeeCC-CCCeEE
Q psy988           63 VEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYH-------TQIHVRSTRGKNATGRKISGIEPMP-GEDKIL  133 (408)
Q Consensus        63 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  133 (408)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||++.....       .............|...|..+.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            456889999999977 5899999999999999999864411       1111223334567888999999999 555677


Q ss_pred             EeeCCCeEEEEEccCcccceeecCccccccceEEEEecC---CCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988          134 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       134 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      +++.|.++++||..+.+....|+...   .+.+-+++|-   ...+++|..+-.|++-|+..+            .+...
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~---~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG------------s~sH~  183 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEG---KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG------------SFSHT  183 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCc---eeehhhcChhhhcceEEEEecCCCcEEEEeccCC------------cceee
Confidence            77889999999999988776665433   2555667763   346788888889999999764            45577


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEe
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYK  289 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~  289 (408)
                      +.+|...|.++.|+|..+++                                  |++|+.||.|++||++.. .+...+.
T Consensus       184 LsGHr~~vlaV~Wsp~~e~v----------------------------------LatgsaDg~irlWDiRrasgcf~~lD  229 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWV----------------------------------LATGSADGAIRLWDIRRASGCFRVLD  229 (397)
T ss_pred             eccccCceEEEEeccCceeE----------------------------------EEecCCCceEEEEEeecccceeEEee
Confidence            88999999999999988887                                  789999999999999854 2333332


Q ss_pred             ec------------cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          290 GY------------VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       290 ~~------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                      .|            .+.+.+..++|+.+++++++++.|..+++|+...+....
T Consensus       230 ~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  230 QHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             cccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence            22            234567889999999999999999999999998876543

>KOG0269|consensus

Probab=99.94  E-value=3.1e-26  Score=194.12  Aligned_cols=203  Identities=16%  Similarity=0.313  Sum_probs=162.2

Q ss_pred             CceEEEEeccC---CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISR---KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~---~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .|.|.+||+..   .+.+..+. |+..|++++|++....+|++||.||+|++||++..+-.  ..+.+....|+.+.|+|
T Consensus       109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--STFRSNSESIRDVKFSP  186 (839)
T ss_pred             CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc--ccccccchhhhceeecc
Confidence            47899999987   55566666 99999999999988999999999999999999987766  56777888999999998


Q ss_pred             -CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988           78 -NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        78 -~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                       .+.+++++...|.+++||++....       ......+|.++|.|+.|+|++.+|++|+.|+.|+|||+.+.+......
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t  259 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDR-------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT  259 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchh-------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE
Confidence             477899999999999999987542       333456788999999999999999999999999999998765443332


Q ss_pred             CccccccceEEEEecCCCE-EEEee--cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          157 GYVNVSSQIKASFSHDGKY-IVSGS--ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      -+ ....+..+.|-|+..+ |++++  .|-.|+|||++.+.           -+...+..|...++.++|..
T Consensus       260 In-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----------IP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  260 IN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----------IPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             Ee-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----------ccceeeeccCccccceeccC
Confidence            22 2244778999997765 55544  47799999997543           33456677777777777764

>KOG1274|consensus

Probab=99.94  E-value=1.7e-24  Score=187.10  Aligned_cols=247  Identities=16%  Similarity=0.208  Sum_probs=187.2

Q ss_pred             cCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        64 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      ..|....+.++|.|+|.+|++++.||.|++|+..... ....+.        .++..|.+++..  +.+|++++.++.|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~--s~~f~~~s~~~tv~   79 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACY--SNHFLTGSEQNTVL   79 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeec--ccceEEeeccceEE
Confidence            4688889999999999999999999999999977652 111111        134567777654  66999999999999


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      +|...+++.-..+....-+  +..++++-+|++++.|+.|-.|++.++.....            ...+.+         
T Consensus        80 ~y~fps~~~~~iL~Rftlp--~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------------~~~lrg---------  136 (933)
T KOG1274|consen   80 RYKFPSGEEDTILARFTLP--IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------------EKVLRG---------  136 (933)
T ss_pred             EeeCCCCCccceeeeeecc--ceEEEEecCCcEEEeecCceeEEEEeccccch------------heeecc---------
Confidence            9999887654444333322  66789999999999999999999998854321            233444         


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc------eec
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN------VSS  296 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~  296 (408)
                                                |..+|.++.|+|++.+||+.+.||.|++||+.++.+...+.+-..      ...
T Consensus       137 --------------------------h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i  190 (933)
T KOG1274|consen  137 --------------------------HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI  190 (933)
T ss_pred             --------------------------cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence                                      445555555556677788999999999999999987776654321      234


Q ss_pred             eeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc
Q psy988          297 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  376 (408)
Q Consensus       297 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~  376 (408)
                      +..++|+|+|..++....|+.|++|+..+....+.          .....+...+..++|+|                .|
T Consensus       191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~----------Lr~~~~ss~~~~~~wsP----------------nG  244 (933)
T KOG1274|consen  191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK----------LRDKLSSSKFSDLQWSP----------------NG  244 (933)
T ss_pred             eeeeeecCCCCeEEeeccCCeEEEEccCCceehee----------ecccccccceEEEEEcC----------------CC
Confidence            66789999998898888999999999987633221          11123445599999999                99


Q ss_pred             cEEEEEecCCeEEEEeCCC
Q psy988          377 YVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       377 ~~l~s~~~dg~v~iw~~~~  395 (408)
                      +|||+++.||.|.|||.++
T Consensus       245 ~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cEEeeeccCCcEEEEeccc
Confidence            9999999999999999995

>KOG2919|consensus

Probab=99.94  E-value=1.5e-24  Score=165.86  Aligned_cols=273  Identities=16%  Similarity=0.257  Sum_probs=191.3

Q ss_pred             eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE----EEEe-eccccccCCCCeEEEeeC-------CCCCeEEEeeC
Q psy988           70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ----IHVR-STRGKNATGRKISGIEPM-------PGEDKILVTSN  137 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~-~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~  137 (408)
                      ...+.|+|||..|++-+.|..+.+|++........    .... ....+...+..|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            45678999999999999999999999864221111    0000 000001122456666664       66778899999


Q ss_pred             CCeEEEEEccCcccceeecCcccc---ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988          138 DSRIRLYDLRDLNLSCKYKGYVNV---SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  214 (408)
Q Consensus       138 dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      +.-|++||.-+++....+....+.   ....+++|+|||.+|++|. ...|++||+.........    .....+.-.+.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v----y~t~~~~k~gq  206 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV----YTTVTKGKFGQ  206 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc----hhhhhcccccc
Confidence            999999999999988877654432   2345799999999999985 568999999432211100    00011112234


Q ss_pred             cceEEEEEEeCCcc-eeeeec-------CCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCCC-ee
Q psy988          215 NAVVTCAVFAPCPE-LIIAQM-------EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDL-NL  284 (408)
Q Consensus       215 ~~~v~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~  284 (408)
                      .+.+.+++|+|-.. .+++..       ..........++-+|.+.|+.++|.++|+.|++|. .|..|..||++.. .+
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            67789999999766 444432       22335566667779999999999999999999985 4788999999864 45


Q ss_pred             eeEEeeccc-eeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          285 SCKYKGYVN-VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       285 ~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      +..+..|.. ...-+-....|++++|++|+.||.|++||++...           ..+..+..|...++.++++|
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g-----------n~~sv~~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG-----------NEVSVTGNYSDTVNGVSLNP  350 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC-----------CcccccccccccccceecCc
Confidence            556666544 2233345667899999999999999999998731           34556677899999999999

>KOG2096|consensus

Probab=99.94  E-value=2.6e-24  Score=164.25  Aligned_cols=265  Identities=17%  Similarity=0.231  Sum_probs=177.6

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDS  139 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  139 (408)
                      ..+++|.+.|++++|+.||++|++++.|+.|++|+++..........+....    -+..+.+.|.||.+.+++. -...
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCC
Confidence            4678999999999999999999999999999999998755433221211111    1356889999998877665 4456


Q ss_pred             eEEEEEccCcc---cceeec-------CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccc
Q psy988          140 RIRLYDLRDLN---LSCKYK-------GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  209 (408)
Q Consensus       140 ~i~i~d~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (408)
                      .+++|.+...+   ....+.       ...+...+..+-....+++|++++.|..|.+|+++.             +.+.
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-------------q~L~  222 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-------------QLLQ  222 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-------------ceee
Confidence            89999875322   111110       011233455666777889999999999999999862             1222


Q ss_pred             ccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC---CC----
Q psy988          210 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR---DL----  282 (408)
Q Consensus       210 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~----  282 (408)
                      .+......                                   -+..+.||+|+++++++.--.|++|..-   .|    
T Consensus       223 ~idtnq~~-----------------------------------n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqe  267 (420)
T KOG2096|consen  223 SIDTNQSS-----------------------------------NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQE  267 (420)
T ss_pred             eecccccc-----------------------------------ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhh
Confidence            22222222                                   2334566777778888888889999853   22    


Q ss_pred             -eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccccee----eeeeccceEEEEec
Q psy988          283 -NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG----IKAHNAVVTCAVFA  357 (408)
Q Consensus       283 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~  357 (408)
                       .....+.+|..  .|..++|||+.+.+++.+.||+++|||++-.+.....     ++.+..    +....+.-..++.+
T Consensus       268 v~rvf~LkGH~s--aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD-----pk~Lk~g~~pl~aag~~p~RL~ls  340 (420)
T KOG2096|consen  268 VKRVFSLKGHQS--AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD-----PKILKEGSAPLHAAGSEPVRLELS  340 (420)
T ss_pred             hhhhheeccchh--heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC-----chHhhcCCcchhhcCCCceEEEeC
Confidence             23345566654  8899999999999999999999999998764332111     112221    11222333379999


Q ss_pred             CCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccc
Q psy988          358 PCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSS  401 (408)
Q Consensus       358 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  401 (408)
                      |                .|+.||.+. ...++++..++++....
T Consensus       341 P----------------~g~~lA~s~-gs~l~~~~se~g~~~~~  367 (420)
T KOG2096|consen  341 P----------------SGDSLAVSF-GSDLKVFASEDGKDYPE  367 (420)
T ss_pred             C----------------CCcEEEeec-CCceEEEEcccCccchh
Confidence            9                787777654 45688888887765443

>KOG0267|consensus

Probab=99.93  E-value=3.5e-26  Score=192.40  Aligned_cols=234  Identities=22%  Similarity=0.345  Sum_probs=194.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |...|.++..-. .++.+++|+.|-.+-+|.+......  ..+.+|..+|.++.|++...+|++|+.+|+|++||++..+
T Consensus        27 hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   27 HSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAI--TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhceeeeec-cceeeccCCCceeeccccccCCchh--heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            888888888855 7889999999999999998776655  4689999999999999999999999999999999999765


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ...        ...+|...+..+.|+|-+.+++.|+.|..+++||.+...+...+.+|...  +..+.|+|+|++++.++
T Consensus       104 ~vr--------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v--v~~l~lsP~Gr~v~~g~  173 (825)
T KOG0267|consen  104 IVR--------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV--VDVLRLSPDGRWVASGG  173 (825)
T ss_pred             hhh--------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce--eEEEeecCCCceeeccC
Confidence            433        23456678999999999999999999999999999988899999886554  66789999999999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      +|..+++||...+            .....+..|...+..+.                                   |+|
T Consensus       174 ed~tvki~d~~ag------------k~~~ef~~~e~~v~sle-----------------------------------~hp  206 (825)
T KOG0267|consen  174 EDNTVKIWDLTAG------------KLSKEFKSHEGKVQSLE-----------------------------------FHP  206 (825)
T ss_pred             Ccceeeeeccccc------------ccccccccccccccccc-----------------------------------cCc
Confidence            9999999998543            33444555555555444                                   555


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                      ..-.++.|+.|+++++||+++.+.+......  ...|.+..|+|+++.+++|....
T Consensus       207 ~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  207 LEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             hhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence            5566788999999999999998888776655  44788999999999999987653

>KOG1538|consensus

Probab=99.93  E-value=3.3e-24  Score=179.53  Aligned_cols=285  Identities=17%  Similarity=0.224  Sum_probs=214.7

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  103 (408)
                      .|..++|-| ||..|+.+. +..+.+||...|...  +++++|...|.+++|+.||+.+++|+.|..+.+|+..-.... 
T Consensus        14 ci~d~afkP-DGsqL~lAA-g~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-   88 (1081)
T KOG1538|consen   14 CINDIAFKP-DGTQLILAA-GSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-   88 (1081)
T ss_pred             chheeEECC-CCceEEEec-CCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence            899999999 777666664 368999999999877  799999999999999999999999999999999986532211 


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  183 (408)
                               ...|...|.|+.|+|-...|++++- ...-+|..+.....    .+.....+.+++|..||++++.|-.+|
T Consensus        89 ---------kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylalG~~nG  154 (1081)
T KOG1538|consen   89 ---------KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLALGMFNG  154 (1081)
T ss_pred             ---------eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEEeccCc
Confidence                     1246789999999999999999876 35778988754432    233345688899999999999999999


Q ss_pred             eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC
Q psy988          184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED  263 (408)
Q Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (408)
                      +|.+-+-.....          -.+..-.+.+++|.+++|+|....-                              ...
T Consensus       155 TIsiRNk~gEek----------~~I~Rpgg~Nspiwsi~~~p~sg~G------------------------------~~d  194 (1081)
T KOG1538|consen  155 TISIRNKNGEEK----------VKIERPGGSNSPIWSICWNPSSGEG------------------------------RND  194 (1081)
T ss_pred             eEEeecCCCCcc----------eEEeCCCCCCCCceEEEecCCCCCC------------------------------ccc
Confidence            999876432211          1122233456778888887753210                              123


Q ss_pred             eEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccccee
Q psy988          264 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  343 (408)
Q Consensus       264 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  343 (408)
                      .+++.....++.+|.+. |+.+..-..-  .....|+.+.++|.++..|+.|+.+.+|--+.             -.+.+
T Consensus       195 i~aV~DW~qTLSFy~Ls-G~~Igk~r~L--~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-------------vrLGT  258 (1081)
T KOG1538|consen  195 ILAVADWGQTLSFYQLS-GKQIGKDRAL--NFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-------------VRLGT  258 (1081)
T ss_pred             eEEEEeccceeEEEEec-ceeecccccC--CCCchhheeccCCcEEEEccCCCceEEEeecC-------------eEEee
Confidence            56677777888888776 4443322211  12345889999999999999999999997654             34555


Q ss_pred             eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          344 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       344 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      +......|+.++..|                +++.++.|+.||+|..|++-..+.+
T Consensus       259 vg~~D~WIWtV~~~P----------------NsQ~v~~GCqDGTiACyNl~fSTVH  298 (1081)
T KOG1538|consen  259 VGEQDSWIWTVQAKP----------------NSQYVVVGCQDGTIACYNLIFSTVH  298 (1081)
T ss_pred             ccccceeEEEEEEcc----------------CCceEEEEEccCeeehhhhHHhHhh
Confidence            555678899999999                9999999999999999998655433

>KOG1009|consensus

Probab=99.93  E-value=1.2e-23  Score=165.69  Aligned_cols=319  Identities=12%  Similarity=0.193  Sum_probs=209.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-------CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-------KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      ...+|.++.|.+...+.|+||+.|..|++|.+..+       .+.....+..|...|+++.|+|+|..|++|+.+|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            45789999999933449999999999999998653       33344678899999999999999999999999999999


Q ss_pred             EeccCCee--------eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccce
Q psy988           94 YTTDQLKY--------HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI  165 (408)
Q Consensus        94 w~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  165 (408)
                      |.......        ..............|...+..++|+|++.++++++.|+.+++||+..++....+..|.+.  +.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y--vq  169 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY--VQ  169 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc--cc
Confidence            98762111        000001111112346789999999999999999999999999999999999888887765  77


Q ss_pred             EEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccccc-ceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          166 KASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN-AVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      .++|.|-++++++-+.|...+.+.+.......               .+. ..+..-++.+            .......
T Consensus       170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~---------------~~~~~~m~~~~~~~------------~e~~s~r  222 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK---------------RHGLDIMPAKAFNE------------REGKSTR  222 (434)
T ss_pred             eeecchhhhhhhhhccCcccceeeeeeeeeee---------------eeeeeEeeecccCC------------CCcceee
Confidence            89999999999999999877777764322111               000 0000000110            0111111


Q ss_pred             eec--CCCceeeeeccCCCCCeEEEecC----C-----CeEEEEEcCCC-eeeeEEeeccceeceeEEEEcC--------
Q psy988          245 VLN--ATGRKISGIEPMPGEDKILVTSN----D-----SRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSH--------  304 (408)
Q Consensus       245 ~~~--~~~~~i~~~~~~~~~~~l~~~~~----d-----~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~--------  304 (408)
                      .+.  ........++|+|+|.++++...    +     +..++|+-... ++...++....  +...+.|+|        
T Consensus       223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k--~~lavr~~pVy~elrp~  300 (434)
T KOG1009|consen  223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK--PALAVRFSPVYYELRPL  300 (434)
T ss_pred             eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc--ceEEEEeeeeEEEeccc
Confidence            111  11233456778888888877532    1     23345543322 12222322211  233333332        


Q ss_pred             ----------CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988          305 ----------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  374 (408)
Q Consensus       305 ----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~  374 (408)
                                -+-.+|.++ .+.|++||.++..+           ....-.-|-..|+.++|++                
T Consensus       301 ~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P-----------~~~v~nihy~~iTDiaws~----------------  352 (434)
T KOG1009|consen  301 SSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP-----------LAVVDNIHYSAITDIAWSD----------------  352 (434)
T ss_pred             cccccccccccceEEEEee-cceEEEeccccccc-----------eEEEeeeeeeeecceeecC----------------
Confidence                      223344554 55899999987521           2222335889999999999                


Q ss_pred             cccEEEEEecCCeEEEEeCCCCCC
Q psy988          375 TGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       375 ~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      ||..|+..+.||...+-.+...+.
T Consensus       353 dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  353 DGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             CCcEEEEeccCCceEEEEEcchhc
Confidence            899999999999877766665443

>KOG1034|consensus

Probab=99.93  E-value=1.6e-23  Score=160.56  Aligned_cols=317  Identities=15%  Similarity=0.205  Sum_probs=218.7

Q ss_pred             eCCceEEEEEcC----CCCCEEEEEeCCCcEEEEecCCCCce-eeee--ecCCceeeEEEEEecC----CCEEEEEecCC
Q psy988           21 HIDFVTAICFHP----RDDRYFLSGSLDGKLRLWNIPDKKVA-VWNE--VEGQTKLITAANFCEN----GKFAVVGSYDG   89 (408)
Q Consensus        21 h~~~v~~~~~sp----~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~--~~~~~~~v~~~~~~~~----~~~l~~~~~dg   89 (408)
                      |..+|..++|++    +..+.+|+++. ..+.+|........ .++.  -..|......++|+-+    ..++|+++.-|
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G  115 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG  115 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence            889999999985    24567777775 57889987654311 1111  1236777888888754    45789999999


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecCcc-ccccceEE
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKA  167 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~  167 (408)
                      .|+|.|+.+++....+        .+|+..|+.+.++|+. +++++++.|..|++|++++..++..+-+.. +...|+++
T Consensus       116 vIrVid~~~~~~~~~~--------~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNY--------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             EEEEEecchhhhccce--------eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence            9999999887765443        3677899999999976 577888999999999999999988875432 33459999


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC-Cceeee
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE-STGYVL  246 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  246 (408)
                      .|+++|.+|++++.|..+++|++....-.            ..++      .+..|+|++...-..  ..... ..-...
T Consensus       188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~------------~~lE------~s~~~~~~~t~~pfp--t~~~~fp~fst~  247 (385)
T KOG1034|consen  188 DFSLDGDRIASCGMDHSLKLWRLNVKEFK------------NKLE------LSITYSPNKTTRPFP--TPKTHFPDFSTT  247 (385)
T ss_pred             EEcCCCCeeeccCCcceEEEEecChhHHh------------hhhh------hhcccCCCCccCcCC--cccccccccccc
Confidence            99999999999999999999999642110            0000      113444443321100  00000 000123


Q ss_pred             cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-CCee-------------eeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          247 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNL-------------SCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                      ..|...|.|+.|--  .++++-+-++.|..|... -.+.             +..+.-......-...+|.|-+++||.|
T Consensus       248 diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             ccccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            35667777887764  778888888899999862 1111             1122222222233456788889999999


Q ss_pred             cCCceEEEeeccccCccccccccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988          313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV  390 (408)
Q Consensus       313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i  390 (408)
                      ...|.|++||++...+.          ...++..  ....|...+|+.                ||.+|+...+|++|.-
T Consensus       326 nq~g~v~vwdL~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~----------------dgs~lv~vcdd~~Vwr  379 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPP----------KCTTLTHSKSGSTVRQTSFSR----------------DGSILVLVCDDGTVWR  379 (385)
T ss_pred             cCCCcEEEEECCCCCCc----------cCceEEeccccceeeeeeecc----------------cCcEEEEEeCCCcEEE
Confidence            99999999999986432          1112221  236789999999                9999999999999999


Q ss_pred             EeCC
Q psy988          391 FLNK  394 (408)
Q Consensus       391 w~~~  394 (408)
                      ||--
T Consensus       380 wdrv  383 (385)
T KOG1034|consen  380 WDRV  383 (385)
T ss_pred             EEee
Confidence            9854

>KOG1273|consensus

Probab=99.93  E-value=1.2e-23  Score=160.34  Aligned_cols=278  Identities=13%  Similarity=0.160  Sum_probs=195.0

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||.|.|||+.+...-+.+. |..+|.+++||+ +|+.|+|+|.|..|.+||+..+.+..  .+. ...+|..+.|+|..
T Consensus        43 ~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~--rir-f~spv~~~q~hp~k  118 (405)
T KOG1273|consen   43 ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLK--RIR-FDSPVWGAQWHPRK  118 (405)
T ss_pred             cCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCcee--EEE-ccCccceeeecccc
Confidence            38999999999999888887 999999999999 99999999999999999999998663  333 46789999999954


Q ss_pred             CE-EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           80 KF-AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        80 ~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      .. .++.-.+..-.+-++..... ..+....   .......-.+..|.+.|+++++|...|.+.++|..+.+++..++..
T Consensus       119 ~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~---d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit  194 (405)
T KOG1273|consen  119 RNKCVATIMEESPVVIDFSDPKH-SVLPKDD---DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT  194 (405)
T ss_pred             CCeEEEEEecCCcEEEEecCCce-eeccCCC---ccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence            33 33333333344444443211 1111100   0111112233468899999999999999999999999888877654


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      . ...+..+.++..|++|+.-+.|..|+.|+++.-...-      +.........-+.-|+.+.|               
T Consensus       195 s-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~------r~~e~e~~~K~qDvVNk~~W---------------  252 (405)
T KOG1273|consen  195 S-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG------RDGEVEPEHKLQDVVNKLQW---------------  252 (405)
T ss_pred             h-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC------ccCCcChhHHHHHHHhhhhh---------------
Confidence            4 2447788999999999999999999999986311100      00000000111112222222               


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                     .+++|+.+|.|++.++ ....++||....|.+++.+.+..+. ....+.|+|-...+++- ..|.
T Consensus       253 ---------------k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~whp~rp~i~si-~sg~  315 (405)
T KOG1273|consen  253 ---------------KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWHPVRPIIASI-ASGV  315 (405)
T ss_pred             ---------------hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecccccceeeeeec-cCCc
Confidence                           2456666677776664 4577999999999999999887643 56788999988888877 6889


Q ss_pred             EEEeeccc
Q psy988          318 IYIWKTHH  325 (408)
Q Consensus       318 i~iw~~~~  325 (408)
                      |+||....
T Consensus       316 v~iw~~~~  323 (405)
T KOG1273|consen  316 VYIWAVVQ  323 (405)
T ss_pred             eEEEEeec
Confidence            99998765

>KOG4328|consensus

Probab=99.93  E-value=9.7e-24  Score=168.58  Aligned_cols=277  Identities=17%  Similarity=0.218  Sum_probs=197.0

Q ss_pred             ceEEEEeccCCe----eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            3 KTVRLWHISRKE----CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         3 g~i~vwd~~~~~----~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      |+|-+||+.+.+    -+..+. |..+|.+|.|+|.+...+++.|.||+|++-|+++........+......+..+.|+.
T Consensus       210 G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~  289 (498)
T KOG4328|consen  210 GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA  289 (498)
T ss_pred             CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence            789999995322    223333 999999999999888899999999999999999887664445555667788999998


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCccccee--
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCK--  154 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--  154 (408)
                      +...++.+..=|...+||.++.....       .....|...|..++++|... +|++++.|++.+|||++.......  
T Consensus       290 e~~~vl~~~~~G~f~~iD~R~~~s~~-------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~  362 (498)
T KOG4328|consen  290 ESRSVLFGDNVGNFNVIDLRTDGSEY-------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF  362 (498)
T ss_pred             CCccEEEeecccceEEEEeecCCccc-------hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence            88888888888899999998765321       11223456899999999654 678889999999999997654443  


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      +....+...|.++.|||.+..|++.+.|..|+|||..--..         ..+....-.|+..        .++++    
T Consensus       363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa---------~~~p~~~I~Hn~~--------t~Rwl----  421 (498)
T KOG4328|consen  363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA---------KDEPLGTIPHNNR--------TGRWL----  421 (498)
T ss_pred             eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc---------cCCccceeeccCc--------ccccc----
Confidence            33344445588999999988899999999999999730000         0000000001000        01111    


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE-ec
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GS  313 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~  313 (408)
                                       .+-...|.|+..++++|..-..|-|+|-..++.+..+.......-..-..|+|-+..+++ ++
T Consensus       422 -----------------T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  422 -----------------TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             -----------------cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence                             233457888999999999989999999999988877655433221223589998885555 55


Q ss_pred             CCceEEEeecc
Q psy988          314 ENQCIYIWKTH  324 (408)
Q Consensus       314 ~dg~i~iw~~~  324 (408)
                      ..|.|+||--+
T Consensus       485 s~Gki~vft~k  495 (498)
T KOG4328|consen  485 SSGKIYVFTNK  495 (498)
T ss_pred             ccceEEEEecC
Confidence            67899998654

>KOG4227|consensus

Probab=99.93  E-value=2.9e-23  Score=163.12  Aligned_cols=314  Identities=17%  Similarity=0.236  Sum_probs=214.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----ceeeee-ecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK----VAVWNE-VEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      +|.+.|+++.|+. ++++||+|+.|..+++|+++..-    ..++.. -..|...|.|++|.....++++|..+++|..-
T Consensus        54 ~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   54 EHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            4999999999999 99999999999999999986421    111112 22456899999999999999999999999999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEecCC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      |+++.+.+....      +....+.|..+..+|..+.|++.+.++.|.+||.+... ....+...........+.|+|..
T Consensus       133 DiEt~qsi~V~~------~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  133 DIETKQSIYVAN------ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             ecccceeeeeec------ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            999876544332      23334589999999999999999999999999998755 22222222223345567899854


Q ss_pred             -CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          174 -KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       174 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                       ..|++.+..+-+-+||.+......-..     .....+....                                   ..
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~-----~~~~~L~~~~-----------------------------------~~  246 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQR-----SMFKGLPQEN-----------------------------------TE  246 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhh-----hccccCcccc-----------------------------------hh
Confidence             567788888899999997543221100     0000011111                                   11


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee-EEe----eccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC-KYK----GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      -.+..|+|+|..|++--....-.+||+-+.++.. ++.    +..+...+.+++|-.|. .+++|+.+=.|++|.+....
T Consensus       247 ~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  247 WMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             hhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence            1234455555555555555555677777644432 222    11223345567887654 49999999999999987643


Q ss_pred             cccc--cccc---------CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          328 AKFS--SVRR---------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       328 ~~~~--~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      ..+-  .+..         -..+.+..+++|.+-++.+.|+|                ...+|++.|....++||.....
T Consensus       326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~----------------H~~~l~SSGVE~~~KlWS~~r~  389 (609)
T KOG4227|consen  326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ----------------HNNLLVSSGVENSFKLWSDHRL  389 (609)
T ss_pred             cccCccccCcchhhCchhheecceeEEEecccccccceeecC----------------CcceEeccchhhheeccccccC
Confidence            3221  1111         11245667899999999999999                8899999999999999986543


Q ss_pred             C
Q psy988          397 P  397 (408)
Q Consensus       397 ~  397 (408)
                      +
T Consensus       390 P  390 (609)
T KOG4227|consen  390 P  390 (609)
T ss_pred             C
Confidence            3

>KOG0302|consensus

Probab=99.93  E-value=4.8e-24  Score=166.27  Aligned_cols=214  Identities=16%  Similarity=0.198  Sum_probs=154.2

Q ss_pred             cCCCCeEEEeeCCCCCe--EEEeeCCCeEEEEEccC----------------cccceeecCccccccceEEEEecC-CCE
Q psy988          115 ATGRKISGIEPMPGEDK--ILVTSNDSRIRLYDLRD----------------LNLSCKYKGYVNVSSQIKASFSHD-GKY  175 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~  175 (408)
                      .|.+.++.+...+-++.  .++-+..|.|.||++..                .+++.++.+|...  -..++|||- ...
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdWSp~~~g~  226 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeecccccccc
Confidence            34456666666665443  34447789999999853                2345556666544  457899992 234


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      |++|..-+.|++|...++.-....         ..+.+|...|..++|+|....                          
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~---------~Pf~gH~~SVEDLqWSptE~~--------------------------  271 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQ---------RPFTGHTKSVEDLQWSPTEDG--------------------------  271 (440)
T ss_pred             cccCccccceEeeeeccCceeecC---------ccccccccchhhhccCCccCc--------------------------
Confidence            888888889999998764332211         223445555555555555443                          


Q ss_pred             eccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccccc
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR  335 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  335 (408)
                              .|++|+-||+|+|||++.+.....+....+...|.-+.|+.+..+||+|+.||+++|||++.-+..      
T Consensus       272 --------vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------  337 (440)
T KOG0302|consen  272 --------VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------  337 (440)
T ss_pred             --------eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------
Confidence                    478999999999999998843322222334447888999999889999999999999999874322      


Q ss_pred             CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          336 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       336 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                         .++..++.|..+|+++.|+|.               +...|+++|.|..|.+||+...+
T Consensus       338 ---~pVA~fk~Hk~pItsieW~p~---------------e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  338 ---QPVATFKYHKAPITSIEWHPH---------------EDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             ---CcceeEEeccCCeeEEEeccc---------------cCceEEeccCCCcEEEEEeeccC
Confidence               678899999999999999995               66788899999999999997654

>KOG0307|consensus

Probab=99.92  E-value=6e-25  Score=194.46  Aligned_cols=293  Identities=15%  Similarity=0.252  Sum_probs=210.3

Q ss_pred             EEEEEcCCCCC-EEEEE----------eCCCcEEEEecCC--CC--ceeeeeecCCceeeEEEEEecCCCE----EEEEe
Q psy988           26 TAICFHPRDDR-YFLSG----------SLDGKLRLWNIPD--KK--VAVWNEVEGQTKLITAANFCENGKF----AVVGS   86 (408)
Q Consensus        26 ~~~~~sp~~~~-~l~t~----------~~dg~i~iw~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~   86 (408)
                      -.++|+| .+. ++++|          +.+.++.||.+..  ..  ......+. -......++|.+.|..    |+.|.
T Consensus        10 a~~awSp-~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   10 ATFAWSP-ASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             ceEEecC-CCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence            3468999 554 56654          2345666666543  22  11111222 2456789999988766    88899


Q ss_pred             cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCccccccce
Q psy988           87 YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI  165 (408)
Q Consensus        87 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  165 (408)
                      .||.|.+||....  ..............|.+.|..+.|++... .|++|+.||.|.|||+.+.+....+........|.
T Consensus        88 edG~I~ly~p~~~--~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   88 EDGNIVLYDPASI--IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             cCCceEEecchhh--ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            9999999998764  11122333344456788999999999665 89999999999999999866555554443456688


Q ss_pred             EEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc--cceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          166 KASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH--NAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       166 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                      +++|+..- ..|++++.+|.+.|||++......            .+..+  ...+..+.|+|+..              
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii------------~ls~~~~~~~~S~l~WhP~~a--------------  219 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPII------------KLSDTPGRMHCSVLAWHPDHA--------------  219 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCCccc------------ccccCCCccceeeeeeCCCCc--------------
Confidence            99998854 457888889999999997642221            12111  13355566666543              


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCC---CeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCC-CEEEEecCCce
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSND---SRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDG-KYIVSGSENQC  317 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~  317 (408)
                                          ..+++++.|   -.|.+||++.. .+++++++|..  .|.++.|++.+ ++|++++.|+.
T Consensus       220 --------------------Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~--GilslsWc~~D~~lllSsgkD~~  277 (1049)
T KOG0307|consen  220 --------------------TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR--GILSLSWCPQDPRLLLSSGKDNR  277 (1049)
T ss_pred             --------------------eeeeeecCCCCCceeEeecccccCCchhhhccccc--ceeeeccCCCCchhhhcccCCCC
Confidence                                235555544   46999998864 45667777765  78999999965 89999999999


Q ss_pred             EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      |.+|+.+++            +.+..+....+.+..+.|+|.               +...++.++-||.|.|+.+.+..
T Consensus       278 ii~wN~~tg------------Evl~~~p~~~nW~fdv~w~pr---------------~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  278 IICWNPNTG------------EVLGELPAQGNWCFDVQWCPR---------------NPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeEecCCCc------------eEeeecCCCCcceeeeeecCC---------------CcchhhhheeccceeeeeeecCC
Confidence            999999997            677778777889999999995               66789999999999999998765

>KOG0307|consensus

Probab=99.92  E-value=2.5e-24  Score=190.56  Aligned_cols=259  Identities=13%  Similarity=0.132  Sum_probs=199.9

Q ss_pred             eEeEEEeCCceEEEEEcCCCCCE----EEEEeCCCcEEEEecCC----CCceeeeeecCCceeeEEEEEecCCC-EEEEE
Q psy988           15 CLCCFQHIDFVTAICFHPRDDRY----FLSGSLDGKLRLWNIPD----KKVAVWNEVEGQTKLITAANFCENGK-FAVVG   85 (408)
Q Consensus        15 ~~~~~~h~~~v~~~~~sp~~~~~----l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~   85 (408)
                      .+..+.-....+.++|.+ .+..    ||.|..||.|.+||...    .....+.....|.+.|..+.|++... .||+|
T Consensus        57 ~~~s~~s~~rF~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   57 PVGSLQSSNRFNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             ccccccccccceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            444455667789999998 5554    89999999999999865    23333467788999999999999755 99999


Q ss_pred             ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecCccccccc
Q psy988           86 SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ  164 (408)
Q Consensus        86 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  164 (408)
                      +.||.|.|||+...+......      .....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+..+.....+
T Consensus       136 a~~geI~iWDlnn~~tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~  209 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHC  209 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccce
Confidence            999999999998755332221      22234689999998754 45677788899999999998888777776665557


Q ss_pred             eEEEEecCCC-EEEEeecCc---eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          165 IKASFSHDGK-YIVSGSENQ---CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       165 ~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      ..+.|+|+.. .+++++.|.   .|.+||++..           ..+++.+.+|...|.++.|++.+.            
T Consensus       210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-----------ssP~k~~~~H~~GilslsWc~~D~------------  266 (1049)
T KOG0307|consen  210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-----------SSPLKILEGHQRGILSLSWCPQDP------------  266 (1049)
T ss_pred             eeeeeCCCCceeeeeecCCCCCceeEeeccccc-----------CCchhhhcccccceeeeccCCCCc------------
Confidence            7899999874 466655543   7999998742           344556667777777777666543            


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC-EEEEecCCceEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIY  319 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~  319 (408)
                                            +++++++.|+.|.+|+.++++.+..+....+  .+..+.|+|... .+++++-||.|.
T Consensus       267 ----------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  267 ----------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             ----------------------hhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhheecccee
Confidence                                  5578999999999999999999999987444  788999999665 888899999999


Q ss_pred             EeeccccC
Q psy988          320 IWKTHHDY  327 (408)
Q Consensus       320 iw~~~~~~  327 (408)
                      ||.+....
T Consensus       323 I~sl~~~~  330 (1049)
T KOG0307|consen  323 IYSLQGTD  330 (1049)
T ss_pred             eeeeecCC
Confidence            99998753

>KOG1188|consensus

Probab=99.92  E-value=3.6e-23  Score=159.40  Aligned_cols=286  Identities=14%  Similarity=0.162  Sum_probs=197.3

Q ss_pred             CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           36 RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        36 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      ..+|++-..|+|++||..+++..  ..+++++..+..+.|..  ....+.+|+.||+|++||++.......+......  
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC--
Confidence            46888888999999999998776  78999999999999977  4677999999999999999987765554433221  


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeC----CCeEEEEEccCccc-ceeecCccccccceEEEEec-CCCEEEEeecCceEEE
Q psy988          114 NATGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYI  187 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i  187 (408)
                         +.+..+++..-+++.+++|++    +-.|.+||++..+. +..+.. .+...|+++.|+| +.+.|++|+.||.|.+
T Consensus       117 ---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~~pnlLlSGSvDGLvnl  192 (376)
T KOG1188|consen  117 ---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPSDPNLLLSGSVDGLVNL  192 (376)
T ss_pred             ---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCCCCCeEEeecccceEEe
Confidence               246777777767778888754    67899999998766 444432 2234488999999 5578999999999999


Q ss_pred             eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE
Q psy988          188 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV  267 (408)
Q Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (408)
                      ||+..+         +....+.....+...|.++.|..++                                  -+.|.+
T Consensus       193 fD~~~d---------~EeDaL~~viN~~sSI~~igw~~~~----------------------------------ykrI~c  229 (376)
T KOG1188|consen  193 FDTKKD---------NEEDALLHVINHGSSIHLIGWLSKK----------------------------------YKRIMC  229 (376)
T ss_pred             eecCCC---------cchhhHHHhhcccceeeeeeeecCC----------------------------------cceEEE
Confidence            999754         1122333344455555555555433                                  133566


Q ss_pred             ecCCCeEEEEEcCCCeeeeEEeecc----------ceeceeEEEEcCCCCEEEEecC-CceEEEeeccccCccccccccC
Q psy988          268 TSNDSRIRLYDLRDLNLSCKYKGYV----------NVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRD  336 (408)
Q Consensus       268 ~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~  336 (408)
                      -+...+..+|+++.+.+...+....          ...++.......+....+.++. -|...++-+.....      ..
T Consensus       230 lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s------~~  303 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS------GS  303 (376)
T ss_pred             EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc------cc
Confidence            6788899999999887655544321          1122222222234455555444 56666665553111      01


Q ss_pred             ccccceeeee-eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          337 RNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       337 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ....+..+.+ |..-|+++.|..                .+.++.|||.||.+.+|..+
T Consensus       304 ~~~~~a~l~g~~~eiVR~i~~~~----------------~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  304 LLTEPAILQGGHEEIVRDILFDV----------------KNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             ccCccccccCCcHHHHHHHhhhc----------------ccceeeccCCCceEEEEecC
Confidence            1133444555 778889999987                78899999999999999954

>KOG1007|consensus

Probab=99.92  E-value=9.5e-23  Score=153.61  Aligned_cols=297  Identities=14%  Similarity=0.163  Sum_probs=201.9

Q ss_pred             CCEEEEEeC----CCcEEEEecCCCC-ceeeeeecCCceeeEEEEEecCCCEE-EEEecC-------CEEEEEeccCCee
Q psy988           35 DRYFLSGSL----DGKLRLWNIPDKK-VAVWNEVEGQTKLITAANFCENGKFA-VVGSYD-------GRCIFYTTDQLKY  101 (408)
Q Consensus        35 ~~~l~t~~~----dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d-------g~i~iw~~~~~~~  101 (408)
                      .-.+++|..    |+.|.+.+++.+. .+..+.+..|.+.|..++-+|-.+.+ +++..+       -.+.||.+.....
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            334555543    6788888776643 23335677888999999999965554 444332       2577998876543


Q ss_pred             eEEEEE-eeccc-cccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceeecCcc---ccccceEEEEec--CC
Q psy988          102 HTQIHV-RSTRG-KNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKYKGYV---NVSSQIKASFSH--DG  173 (408)
Q Consensus       102 ~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~---~~~~~~~~~~~~--~~  173 (408)
                      ...... ..... ...+-+.|.|+.|.|++..+++-. |..|.+|++..... ...+....   ......+-+|+|  ++
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg  184 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG  184 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence            211110 00000 112335899999999999998877 68899999987665 33332211   122344567888  77


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      +.+++. .|+++..||+++....           ...-..|...|..+.|+|+.+++                       
T Consensus       185 nqv~tt-~d~tl~~~D~RT~~~~-----------~sI~dAHgq~vrdlDfNpnkq~~-----------------------  229 (370)
T KOG1007|consen  185 NQVATT-SDSTLQFWDLRTMKKN-----------NSIEDAHGQRVRDLDFNPNKQHI-----------------------  229 (370)
T ss_pred             ceEEEe-CCCcEEEEEccchhhh-----------cchhhhhcceeeeccCCCCceEE-----------------------
Confidence            777766 5789999999865322           22234555666777777766554                       


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcC-CCCEEEEecCCceEEEeeccccCcccc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~  331 (408)
                                 |++++.||.|++||.+.. .++..+.+|.+  .+.++.|+| ..++|++|+.|..|.+|....-.....
T Consensus       230 -----------lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q  296 (370)
T KOG1007|consen  230 -----------LVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ  296 (370)
T ss_pred             -----------EEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence                       688999999999999864 46777888877  889999999 456788999999999998754321110


Q ss_pred             -----------------ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          332 -----------------SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       332 -----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                       ..++-....+.++..|+..|.+++||..               |.-++|+-++||++.|=+++
T Consensus       297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa---------------dPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA---------------DPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccCcchhhHHhcccccccccccccccccceEEEeeccC---------------CCeeEEEeccCceEEeecCC
Confidence                             0111223456678899999999999974               77788899999999887765


Q ss_pred             C
Q psy988          395 T  395 (408)
Q Consensus       395 ~  395 (408)
                      .
T Consensus       362 r  362 (370)
T KOG1007|consen  362 R  362 (370)
T ss_pred             h
Confidence            4

>KOG0270|consensus

Probab=99.92  E-value=9.3e-23  Score=162.42  Aligned_cols=296  Identities=13%  Similarity=0.177  Sum_probs=197.5

Q ss_pred             EEEEcCCCCCEEEEEeCC---Cc--EEEEecCCCCceeeeeecCCceeeEEEEEec-------CCCEEEEEecCCEEEEE
Q psy988           27 AICFHPRDDRYFLSGSLD---GK--LRLWNIPDKKVAVWNEVEGQTKLITAANFCE-------NGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw   94 (408)
                      .+..-| ..++++++-.+   ..  |++|+-........+.+. -.....|+.|..       .|+++|.|+.|..|.||
T Consensus       130 e~~V~p-sDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~i-lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  130 EEQVKP-SDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFI-LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cceecc-CCcEEEEeeccCCceEEEEEEEcCCCcceeEeccee-ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            455566 55666666443   22  445543332211101110 122335666642       37899999999999999


Q ss_pred             eccCCeeeEEE-EEe------------eccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           95 TTDQLKYHTQI-HVR------------STRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        95 ~~~~~~~~~~~-~~~------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      |+.-....... .+.            ......+|...|..+.|+.. .+.|++|+.|.+|++||+.++++...+..|..
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k  287 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK  287 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence            98743322111 111            11112356777888888765 45678889999999999999999998886665


Q ss_pred             cccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          161 VSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       161 ~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      .  |.++.|+| ...+|++|+.|+++.+.|.+.....            ...-...+.|-.++|.|....          
T Consensus       288 ~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------~~~wk~~g~VEkv~w~~~se~----------  343 (463)
T KOG0270|consen  288 K--VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------GKEWKFDGEVEKVAWDPHSEN----------  343 (463)
T ss_pred             c--eeEEEecCCCceEEEeccccceEEeeeccCcccc------------CceEEeccceEEEEecCCCce----------
Confidence            5  78899998 5678999999999999999742110            000112334555555554433          


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCC-CCEEEEecCCce
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHD-GKYIVSGSENQC  317 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~  317 (408)
                                              .++++..||+++-+|+++. +++.++..|..  .|.++++++. -.+|++++.|+.
T Consensus       344 ------------------------~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  344 ------------------------SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             ------------------------eEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccce
Confidence                                    3677889999999999975 78888888766  8889999884 457889999999


Q ss_pred             EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      |++|++....+.          .+..-..--+...|+++.|+               ....||.||..+.++|||+.+..
T Consensus       398 Vklw~~~~~~~~----------~v~~~~~~~~rl~c~~~~~~---------------~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  398 VKLWKFDVDSPK----------SVKEHSFKLGRLHCFALDPD---------------VAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             EEEEeecCCCCc----------ccccccccccceeecccCCC---------------cceEEEecCccceEEEeecccCh
Confidence            999999875332          11111111234678888885               55688999999999999998876


Q ss_pred             Cc
Q psy988          398 KH  399 (408)
Q Consensus       398 ~~  399 (408)
                      ..
T Consensus       453 ~V  454 (463)
T KOG0270|consen  453 PV  454 (463)
T ss_pred             hH
Confidence            43

>KOG1963|consensus

Probab=99.92  E-value=4.5e-22  Score=171.76  Aligned_cols=329  Identities=14%  Similarity=0.203  Sum_probs=221.2

Q ss_pred             CceEEEEeccCCeeEeE-----EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC--CCceeeeeecCCceeeEEEE
Q psy988            2 DKTVRLWHISRKECLCC-----FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD--KKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~-----~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~   74 (408)
                      +..+.+|+..++.....     ..|...+++.++|| +++++|+|..||.|.+|.--.  +.....+.+.-|...|.+++
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~  258 (792)
T KOG1963|consen  180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS  258 (792)
T ss_pred             eeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE
Confidence            45688898877552111     13888899999999 999999999999999997544  33334467788999999999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  154 (408)
                      |+++|.+|++|+..|.+.+|.+++++.....         ..+++|..+.++||+........|+.|.+..+.+......
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP---------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGKKQFLP---------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCCccccc---------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            9999999999999999999999998732211         1246899999999999999999999999998876655544


Q ss_pred             ecCccc---------cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          155 YKGYVN---------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       155 ~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      +.+...         ..-...++++|..+.++..+..|.|.+||+.+....+...                 +.....++
T Consensus       330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~-----------------v~~~n~~~  392 (792)
T KOG1963|consen  330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ-----------------VCDENYSD  392 (792)
T ss_pred             ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE-----------------EEeecccC
Confidence            433222         1224467888877778888899999999997654332211                 00000000


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec--------C--CCeEEEEEcCCCe----eeeEEe-e
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS--------N--DSRIRLYDLRDLN----LSCKYK-G  290 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~--d~~i~i~d~~~~~----~~~~~~-~  290 (408)
                      +..                   .....++.++.+..|.++++.-        .  .-.+++|-.....    +...+. .
T Consensus       393 ~~~-------------------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P  453 (792)
T KOG1963|consen  393 GDV-------------------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP  453 (792)
T ss_pred             Ccc-------------------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC
Confidence            000                   1122344555555566666542        2  2457888765433    222222 3


Q ss_pred             ccceeceeEEEEcCCCC-EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCC
Q psy988          291 YVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  369 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  369 (408)
                      |... .+..+..++... ..++++.||.++||-+........  ....+.+...-.-|..++++++|+.           
T Consensus       454 H~~~-~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k--~~s~W~c~~i~sy~k~~i~a~~fs~-----------  519 (792)
T KOG1963|consen  454 HGNA-FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK--KSSNWTCKAIGSYHKTPITALCFSQ-----------  519 (792)
T ss_pred             CCce-eEEEEEecCcccceeEEeccCCeEEEEEEecccccCc--CccceEEeeeeccccCcccchhhcC-----------
Confidence            3332 222233333333 888999999999999966543322  1222333333334788999999999           


Q ss_pred             CCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          370 DKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       370 ~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                           ||.. ++++.|++|.+||..+.
T Consensus       520 -----dGsl-la~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  520 -----DGSL-LAVSFDDTITIWDYDTK  540 (792)
T ss_pred             -----CCcE-EEEecCCEEEEecCCCh
Confidence                 8854 55567899999999884

>KOG1034|consensus

Probab=99.92  E-value=4.9e-23  Score=157.85  Aligned_cols=279  Identities=13%  Similarity=0.192  Sum_probs=192.8

Q ss_pred             eEEEEeccCCe---eEeEEE---eCCceEEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            4 TVRLWHISRKE---CLCCFQ---HIDFVTAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         4 ~i~vwd~~~~~---~~~~~~---h~~~v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      .+.+|.....-   .++.+.   |.+....++|+-+   ...+||.|+.-|.|+|.|+.++++.  ..+.+|...|+.+.
T Consensus        65 rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~ghG~sINeik  142 (385)
T KOG1034|consen   65 RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYRGHGGSINEIK  142 (385)
T ss_pred             EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--cceeccCccchhhh
Confidence            45666654332   223332   7788888888752   3558999999999999999999887  78999999999999


Q ss_pred             EecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce
Q psy988           75 FCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        75 ~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      |.|+. ++++++|.|..|++|++++...+     ..+.+..+|.+.|.++.|++++.++++++.|.+|++|++...+...
T Consensus       143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv-----~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~  217 (385)
T KOG1034|consen  143 FHPDRPQLVLSASKDHSVRLWNIQTDVCV-----AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN  217 (385)
T ss_pred             cCCCCCcEEEEecCCceEEEEeccCCeEE-----EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence            99964 78999999999999999998764     3445667888999999999999999999999999999998543221


Q ss_pred             eecCc------c--------------------ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCC--C
Q psy988          154 KYKGY------V--------------------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR--N  205 (408)
Q Consensus       154 ~~~~~------~--------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~  205 (408)
                      .++..      .                    +...|-|+.|  -|+++++-+-++.|..|....-...+....++.  .
T Consensus       218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~  295 (385)
T KOG1034|consen  218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT  295 (385)
T ss_pred             hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence            11110      0                    0001111111  156788888888999998732111111110000  0


Q ss_pred             ccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeee
Q psy988          206 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS  285 (408)
Q Consensus       206 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  285 (408)
                      ..+..+.-....+.-                                 ...+|.|-++.|+.|...|.|.+||++..++.
T Consensus       296 Ti~~~~~~~~c~iWf---------------------------------irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  296 TILGEFDYPMCDIWF---------------------------------IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             eeeeEeccCccceEE---------------------------------EEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence            111111111111221                                 22345566778899999999999999987653


Q ss_pred             --eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          286 --CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       286 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                        .++..+.....|...+||.||.+|+....|+.|.-||..
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence              233334455678899999999999999999999999853

>KOG0302|consensus

Probab=99.92  E-value=4.5e-23  Score=160.91  Aligned_cols=254  Identities=13%  Similarity=0.168  Sum_probs=183.6

Q ss_pred             EEeCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCC--------------CCceeeeeecCCceeeEEEEEecC-CCEE
Q psy988           19 FQHIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPD--------------KKVAVWNEVEGQTKLITAANFCEN-GKFA   82 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l   82 (408)
                      ..|.+.++.+.-++. +..+.++-+..|.|.||++..              .+..++.++.+|...=.++.|||- ...|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            348888999888874 345566667789999999843              223344678899999999999993 2348


Q ss_pred             EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecCcccc
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV  161 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  161 (408)
                      ++|..-+.|++|...++......     ....+|...|-.++|+|.. ..|++|+.||+|+|||++.+.....+....+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~-----~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~  302 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQ-----RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN  302 (440)
T ss_pred             ccCccccceEeeeeccCceeecC-----ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence            88888899999999886543221     1223477899999999965 46778899999999999988433332223333


Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      ..|..+.|+..-.+|++|+.||+++|||++.-         ...+++..++.|..+|+++.|+|....            
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~---------~~~~pVA~fk~Hk~pItsieW~p~e~s------------  361 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQF---------KSGQPVATFKYHKAPITSIEWHPHEDS------------  361 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhc---------cCCCcceeEEeccCCeeEEEeccccCc------------
Confidence            45778899998889999999999999999763         233666778888888888888876544            


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe----------------eeeEEeeccceeceeEEEEcCC
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN----------------LSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                                            .|++++.|..|.+||+.--.                +.+.+-.|.+...+-.+.|++.
T Consensus       362 ----------------------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  362 ----------------------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ  419 (440)
T ss_pred             ----------------------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence                                  37888999999999985321                1223334555556777899985


Q ss_pred             C-CEEEEecCCceEEEe
Q psy988          306 G-KYIVSGSENQCIYIW  321 (408)
Q Consensus       306 ~-~~l~~~~~dg~i~iw  321 (408)
                      - .+|++.+.|| +.||
T Consensus       420 iPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  420 IPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             CCCeEEEecccc-eeEE
Confidence            4 4677777776 3444

>KOG1009|consensus

Probab=99.92  E-value=9.2e-23  Score=160.67  Aligned_cols=286  Identities=17%  Similarity=0.245  Sum_probs=199.1

Q ss_pred             CceEEEEeccCCee---------EeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC--------C------CCc
Q psy988            2 DKTVRLWHISRKEC---------LCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP--------D------KKV   57 (408)
Q Consensus         2 Dg~i~vwd~~~~~~---------~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~--------~------~~~   57 (408)
                      |..|+||-+..++.         +..+. |...|+++.|+| +|++||+|+.+|.|.+|...        +      ...
T Consensus        35 D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w  113 (434)
T KOG1009|consen   35 DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKW  113 (434)
T ss_pred             ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccce
Confidence            78999998754322         22233 999999999999 99999999999999999876        2      223


Q ss_pred             eeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC
Q psy988           58 AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN  137 (408)
Q Consensus        58 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  137 (408)
                      ...+.+.+|...|..++|+|++.++++++.|..+++||+..++......        .|...+..++|.|-++++++-+.
T Consensus       114 ~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  114 VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhcc
Confidence            4456788999999999999999999999999999999999987654433        56678999999999999999888


Q ss_pred             CCeEEEEEccCcccceee---------------------cCccccccceEEEEecCCCEEEEeec----Cce-----EEE
Q psy988          138 DSRIRLYDLRDLNLSCKY---------------------KGYVNVSSQIKASFSHDGKYIVSGSE----NQC-----IYI  187 (408)
Q Consensus       138 dg~i~i~d~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~-----i~i  187 (408)
                      |...+.+.+...+.+...                     .......-...++|+|+|..+++...    .+.     .++
T Consensus       186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYv  265 (434)
T KOG1009|consen  186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYV  265 (434)
T ss_pred             CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEe
Confidence            887777666543322211                     11111122334688999998887642    222     233


Q ss_pred             eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE
Q psy988          188 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV  267 (408)
Q Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (408)
                      |+-           .....+...+.....+...+.++|---.+                ...... ..+-..|-+-.+++
T Consensus       266 fsr-----------k~l~rP~~~lp~~~k~~lavr~~pVy~el----------------rp~~~~-~~~~~lpyrlvfai  317 (434)
T KOG1009|consen  266 FSR-----------KDLKRPAARLPSPKKPALAVRFSPVYYEL----------------RPLSSE-KFLFVLPYRLVFAI  317 (434)
T ss_pred             ecc-----------ccccCceeecCCCCcceEEEEeeeeEEEe----------------cccccc-ccccccccceEEEE
Confidence            322           13334445556666666777776622111                000000 00223445555666


Q ss_pred             ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          268 TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       268 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ++.+ .+.+||.++..+....... +-..++.++|++||..|+..+.||...+-.++..
T Consensus       318 At~~-svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  318 ATKN-SVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             eecc-eEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            6654 6999999988887776543 3347999999999999999999998888777654

>KOG1445|consensus

Probab=99.92  E-value=9.1e-23  Score=170.02  Aligned_cols=194  Identities=16%  Similarity=0.261  Sum_probs=138.2

Q ss_pred             eCCCeEEEEEccCcccc--eeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc
Q psy988          136 SNDSRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  212 (408)
Q Consensus       136 ~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
                      +..|.|.||+++....+  ..+.+..+...++.+.|.| |...|++++.||.|++|.+..+...     .....+...+.
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~-----e~~~tPe~~lt  674 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP-----ENEMTPEKILT  674 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC-----cccCCcceeee
Confidence            45688889988753322  2234445556688899999 7788999999999999998754322     12223334445


Q ss_pred             cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc
Q psy988          213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  292 (408)
Q Consensus       213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  292 (408)
                      .|...|+++.|+|-.                                  ...|++++.|-+|++||+.+++....+.+|.
T Consensus       675 ~h~eKI~slRfHPLA----------------------------------advLa~asyd~Ti~lWDl~~~~~~~~l~gHt  720 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLA----------------------------------ADVLAVASYDSTIELWDLANAKLYSRLVGHT  720 (1012)
T ss_pred             cccceEEEEEecchh----------------------------------hhHhhhhhccceeeeeehhhhhhhheeccCc
Confidence            555555555555532                                  3457889999999999999999999999987


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCC
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDK  371 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~  371 (408)
                      .  .|..++|||||+.+|+.+.||+|++|+......+..           .-.+- ..+-..+.|.-             
T Consensus       721 d--qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-----------Eg~gpvgtRgARi~wac-------------  774 (1012)
T KOG1445|consen  721 D--QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-----------EGKGPVGTRGARILWAC-------------  774 (1012)
T ss_pred             C--ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-----------cCCCCccCcceeEEEEe-------------
Confidence            7  889999999999999999999999999887643321           11111 12234577877             


Q ss_pred             CCCcccEEEEEecC----CeEEEEeCCCCC
Q psy988          372 SESTGYVLVSADFN----GVIRVFLNKTKP  397 (408)
Q Consensus       372 ~s~~~~~l~s~~~d----g~v~iw~~~~~~  397 (408)
                         ||++++..|.|    ..|.+|+.++..
T Consensus       775 ---dgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  775 ---DGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             ---cCcEEEEecccccchhhhhhhhhhhcc
Confidence               78888877765    457788776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.92  E-value=7.8e-21  Score=160.35  Aligned_cols=279  Identities=15%  Similarity=0.233  Sum_probs=178.7

Q ss_pred             CceEEEEeccC-Ce--eEeEEEeCCceEEEEEcCCCCCEEEEEe-CCCcEEEEecCC-CCceeeeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISR-KE--CLCCFQHIDFVTAICFHPRDDRYFLSGS-LDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~-~~--~~~~~~h~~~v~~~~~sp~~~~~l~t~~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      |+.|.+||+.+ ++  .+..+.+.+....++++| ++++|++++ .++.|.+|+++. +......... .......+.|+
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~   88 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTD   88 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEEC
Confidence            78999999964 33  455566667889999999 898887664 478999999973 4332222222 23356789999


Q ss_pred             cCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCccccee
Q psy988           77 ENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        77 ~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  154 (408)
                      |+++++++++. ++.|.+|++++....... .....    .......++++|++++++++. .++.|.+||+.+...+..
T Consensus        89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~-~~~~~----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         89 HQGRFLFSASYNANCVSVSPLDKDGIPVAP-IQIIE----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             CCCCEEEEEEcCCCeEEEEEECCCCCCCCc-eeecc----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            99999988775 789999999743211110 11111    112467788999999987665 469999999976332211


Q ss_pred             -----ecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          155 -----YKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       155 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                           ..... ...+..+.|+|+|++++++.. ++.|.+|++........                  .+..+...|...
T Consensus       164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~------------------~~~~~~~~p~~~  224 (330)
T PRK11028        164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE------------------CVQTLDMMPADF  224 (330)
T ss_pred             cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE------------------EEEEEecCCCcC
Confidence                 11111 133557899999999988876 89999999963210000                  011111111000


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeEEeecc-ceeceeEEEEcCCC
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDG  306 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~s~~~  306 (408)
                                         ........+.++|++++++++. .++.|.+|++........+..+. .......+.++|||
T Consensus       225 -------------------~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg  285 (330)
T PRK11028        225 -------------------SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSG  285 (330)
T ss_pred             -------------------CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCC
Confidence                               0111234577888888888875 47899999986533211222211 11234578999999


Q ss_pred             CEEEEecC-CceEEEeeccc
Q psy988          307 KYIVSGSE-NQCIYIWKTHH  325 (408)
Q Consensus       307 ~~l~~~~~-dg~i~iw~~~~  325 (408)
                      ++|++++. +++|.+|+++.
T Consensus       286 ~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        286 KYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CEEEEEEccCCcEEEEEEcC
Confidence            99998775 88999998864

>KOG0650|consensus

Probab=99.91  E-value=1.6e-22  Score=167.17  Aligned_cols=263  Identities=14%  Similarity=0.204  Sum_probs=193.0

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC--------------------------
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK--------------------------   55 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~--------------------------   55 (408)
                      ||+|+||.+.++.+++.+...+.|.|++|+|....-++.+.....+.|-+..-|                          
T Consensus       421 DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~  500 (733)
T KOG0650|consen  421 DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVV  500 (733)
T ss_pred             CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccce
Confidence            899999999999999999999999999999932223333333344544443211                          


Q ss_pred             -------Cce--eeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEE
Q psy988           56 -------KVA--VWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI  123 (408)
Q Consensus        56 -------~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  123 (408)
                             +..  -......|...|..+.|+..|.||++...+   ..|.|.++........+        ....+.+.++
T Consensus       501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF--------~kskG~vq~v  572 (733)
T KOG0650|consen  501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF--------RKSKGLVQRV  572 (733)
T ss_pred             eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch--------hhcCCceeEE
Confidence                   000  012334577889999999999999998765   47888888765432211        1234689999


Q ss_pred             eeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccC
Q psy988          124 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD  203 (408)
Q Consensus       124 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  203 (408)
                      .|+|...+|++++. ..|++||+..+..++.+....  ..+..++.+|.|..|+.|+.|+.+..||+.-.          
T Consensus       573 ~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~WfDldls----------  639 (733)
T KOG0650|consen  573 KFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMCWFDLDLS----------  639 (733)
T ss_pred             EecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeEEEEcccC----------
Confidence            99999999999987 689999999877776655433  33668999999999999999999999999642          


Q ss_pred             CCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC--
Q psy988          204 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--  281 (408)
Q Consensus       204 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--  281 (408)
                       ..+++.+..|...+++++|++                                   .-.++++|+.||++.||.-.-  
T Consensus       640 -skPyk~lr~H~~avr~Va~H~-----------------------------------ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  640 -SKPYKTLRLHEKAVRSVAFHK-----------------------------------RYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             -cchhHHhhhhhhhhhhhhhcc-----------------------------------ccceeeeecCCCcEEEEeeeeeh
Confidence             344566666666666665554                                   456678999999999986321  


Q ss_pred             -------CeeeeEEeeccce--eceeEEEEcCCCCEEEEecCCceEEEe
Q psy988          282 -------LNLSCKYKGYVNV--SSQIKASFSHDGKYIVSGSENQCIYIW  321 (408)
Q Consensus       282 -------~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iw  321 (408)
                             --++..+.+|...  ..|..+.|+|...+|++++.||+|++|
T Consensus       684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                   1245566676542  458888999999999999999999998

>KOG0270|consensus

Probab=99.91  E-value=4.4e-23  Score=164.28  Aligned_cols=247  Identities=17%  Similarity=0.240  Sum_probs=177.8

Q ss_pred             ceEEEEEcC------CCCCEEEEEeCCCcEEEEecCCCCce-------------------eeeeecCCceeeEEEEEecC
Q psy988           24 FVTAICFHP------RDDRYFLSGSLDGKLRLWNIPDKKVA-------------------VWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus        24 ~v~~~~~sp------~~~~~l~t~~~dg~i~iw~~~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~   78 (408)
                      .-.|++|.-      ..|+|+|.|+.|..|.|||+.-....                   ......+|+..|.+++|+.+
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            345666642      14789999999999999998531100                   01123478999999999875


Q ss_pred             -CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccc-eee
Q psy988           79 -GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLS-CKY  155 (408)
Q Consensus        79 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~-~~~  155 (408)
                       .+.||+|+.|.+|.+||+.+++....+.        .|++.|.++.|+|. ...|++|+.|++|.+.|.+..... ..+
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSIT--------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehh--------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence             4678999999999999999988765544        46689999999995 457889999999999999952221 122


Q ss_pred             cCccccccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          156 KGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      +..   ..+-.++|.|.. ..++++..||+++-+|++..           .+++.++..|...|.++.+++....+    
T Consensus       327 k~~---g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----------~~~vwt~~AHd~~ISgl~~n~~~p~~----  388 (463)
T KOG0270|consen  327 KFD---GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----------GKPVWTLKAHDDEISGLSVNIQTPGL----  388 (463)
T ss_pred             Eec---cceEEEEecCCCceeEEEecCCceEEeeecCCC-----------CCceeEEEeccCCcceEEecCCCCcc----
Confidence            211   225568898855 55788889999999999753           35566777888888888877765544    


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC-EEEEec
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGS  313 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~  313 (408)
                                                    +++++.|+.+++|++..-............+...|.++.|+-. ++|.|+
T Consensus       389 ------------------------------l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  389 ------------------------------LSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             ------------------------------eeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC
Confidence                                          7889999999999987544322222111222345667777654 567788


Q ss_pred             CCceEEEeecccc
Q psy988          314 ENQCIYIWKTHHD  326 (408)
Q Consensus       314 ~dg~i~iw~~~~~  326 (408)
                      ..+.++|||+.+.
T Consensus       439 ~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  439 EKAVLRVWDIFTN  451 (463)
T ss_pred             ccceEEEeecccC
Confidence            8889999999876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.91  E-value=1e-20  Score=159.69  Aligned_cols=284  Identities=11%  Similarity=0.106  Sum_probs=176.2

Q ss_pred             EEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988           38 FLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNA  115 (408)
Q Consensus        38 l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  115 (408)
                      +++...++.|.+|++.+ ++......+. +.+....++++|++++|++++ .++.|.+|+++............      
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------   77 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------   77 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence            44446789999999964 4433334443 345677889999999987765 47889999997321111111111      


Q ss_pred             CCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcc-cceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeecc
Q psy988          116 TGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHH  192 (408)
Q Consensus       116 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (408)
                      .......++++|+++++++++. ++.|.+|++.+.. .............+..++++|+++++++++ .++.|.+||+.+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            1124678999999999988864 8899999997432 211111111112345678999999886554 568999999964


Q ss_pred             ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-C
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-D  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d  271 (408)
                      .....               .....  .+.                        ...+..+..+.|+|++++++++.. +
T Consensus       158 ~g~l~---------------~~~~~--~~~------------------------~~~g~~p~~~~~~pdg~~lyv~~~~~  196 (330)
T PRK11028        158 DGHLV---------------AQEPA--EVT------------------------TVEGAGPRHMVFHPNQQYAYCVNELN  196 (330)
T ss_pred             CCccc---------------ccCCC--cee------------------------cCCCCCCceEEECCCCCEEEEEecCC
Confidence            21100               00000  000                        001223445677788888877765 8


Q ss_pred             CeEEEEEcCC--Ce--eeeEEeecc----ceeceeEEEEcCCCCEEEEecC-CceEEEeeccccCccccccccCccccce
Q psy988          272 SRIRLYDLRD--LN--LSCKYKGYV----NVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       272 ~~i~i~d~~~--~~--~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                      ++|.+|+++.  ++  ....+....    .......+.++|++++|+++.. ++.|.+|++.......        +.+.
T Consensus       197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~--------~~~~  268 (330)
T PRK11028        197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL--------SFEG  268 (330)
T ss_pred             CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE--------EEeE
Confidence            9999999973  32  233332211    1112335889999999998864 7899999997542111        1111


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-CCeEEEEeCC
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-NGVIRVFLNK  394 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~v~iw~~~  394 (408)
                      .... ......+.++|                ||++|+++.. +++|.+|++.
T Consensus       269 ~~~~-~~~p~~~~~~~----------------dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        269 HQPT-ETQPRGFNIDH----------------SGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEec-cccCCceEECC----------------CCCEEEEEEccCCcEEEEEEc
Confidence            1111 12346789999                8988887765 8999999875

>KOG1587|consensus

Probab=99.91  E-value=8.1e-22  Score=169.56  Aligned_cols=280  Identities=15%  Similarity=0.192  Sum_probs=197.8

Q ss_pred             CceEEEEeccCC-eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee----eeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISRK-ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV----WNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~~-~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~v~~~~~~   76 (408)
                      ++.+.|||++.. .+...+.-...|++++|+|.+..++|.|..+|.|.+||+..+....    ......|..+++.+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            346899999876 6777777889999999999999999999999999999998876521    12344688999999997


Q ss_pred             cCC--CEEEEEecCCEEEEEeccCCeeeEEEEEeeccc----cccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCc
Q psy988           77 ENG--KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG----KNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDL  149 (408)
Q Consensus        77 ~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~  149 (408)
                      .+.  .-+++++.||.|..|+++...............    .......+++++|.+. ...+++|+++|.|.--+-...
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            654  449999999999999887654422222211111    1122346888999884 457889999999887433222


Q ss_pred             ccce--eecCc----cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          150 NLSC--KYKGY----VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       150 ~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      +...  .++++    .+...+..+.++|-+..++..+.|-++++|....           ...++..+..+...+.+++|
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~-----------~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV-----------IASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC-----------CCCcchhhhhccceeeeeEE
Confidence            2111  11111    2334577889999776655555599999998752           23444555666677888888


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  303 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s  303 (408)
                      +|-...+                                  |+++..||.|.+||+....................+.|+
T Consensus       450 Sptrpav----------------------------------F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s  495 (555)
T KOG1587|consen  450 SPTRPAV----------------------------------FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS  495 (555)
T ss_pred             cCcCceE----------------------------------EEEEcCCCceehhhhhccccCCcccccccccccceeecC
Confidence            8876655                                  788899999999998754432222221123355678899


Q ss_pred             CCCCEEEEecCCceEEEeecccc
Q psy988          304 HDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       304 ~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ++|+.|++|...|.+.+|++...
T Consensus       496 ~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  496 PNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCCcEEEEecCCCcEEEEEcCch
Confidence            99999999999999999999754

>KOG0642|consensus

Probab=99.91  E-value=5.4e-23  Score=168.69  Aligned_cols=262  Identities=17%  Similarity=0.243  Sum_probs=186.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC------CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD------KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      |.+.|+++.|+| -...|++++.||++++|+++.      ..+.+...+.+|.++|.|++..+++..+++|+.||+|+.|
T Consensus       293 ~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  293 HDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             chhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            999999999999 888999999999999999933      3355567899999999999999999999999999999999


Q ss_pred             eccCCeeeEEEE--EeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           95 TTDQLKYHTQIH--VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        95 ~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      ++..........  ........+|.+.+..+++++...+|++++.||+++.|+.....+ ..+.........+++.+-..
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS  450 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence            776222111110  011122356778999999999999999999999999999876665 44554444444555555433


Q ss_pred             C-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          173 G-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       173 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      . ...++...-+.-.++++......            ..+..  ..      +|.                    .....
T Consensus       451 ~~a~~~~s~~~~~~~~~~~ev~s~~------------~~~~s--~~------~~~--------------------~~~~~  490 (577)
T KOG0642|consen  451 RPAHSLASFRFGYTSIDDMEVVSDL------------LIFES--SA------SPG--------------------PRRYP  490 (577)
T ss_pred             hhHhhhhhcccccccchhhhhhhhe------------eeccc--cC------CCc--------------------ccccC
Confidence            2 12222222222222222211000            00000  00      000                    01112


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .+..+...|.+...+++..|+.|+++|..+++++.....|..  .++++++.|+|-+|++++.|+.+++|.+...
T Consensus       491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  491 QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccceEEecCCCCeeEecccCCceecccccccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence            345566677788889999999999999999999988887655  7889999999999999999999999998764

>KOG1240|consensus

Probab=99.91  E-value=1.9e-21  Score=173.51  Aligned_cols=326  Identities=15%  Similarity=0.207  Sum_probs=211.0

Q ss_pred             EeccCCeeEeEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----ceeeeeecCCceeeEEEEEecCCCE
Q psy988            8 WHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-----VAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         8 wd~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      |+++ |..+..+ .|...|..++.++..+.+++|||.||+|++|+...-.     .....++......+.++.+.++++.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            5554 4445444 4999999999998566999999999999999986522     1111233335678999999999999


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEe-eccccccCCCCeEEEeeCCC-C-CeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVR-STRGKNATGRKISGIEPMPG-E-DKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      +|.++.||.|++.+++..+........ ........+..+..-+|... . ..++.+...+.|..||++.......++..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999999863221111111 11111112223333344432 2 36777888899999999988877777777


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      ...+.+.+++.+|.+++++.|...|.+.+||++-......           --..+..++..+..+|-.           
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s-----------w~~P~~~~i~~v~~~~~~----------- 1250 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS-----------WEHPARAPIRHVWLCPTY----------- 1250 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec-----------ccCcccCCcceEEeeccC-----------
Confidence            7777899999999999999999999999999974322211           011223444444444421           


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEE-ec-CCCeEEEEEcCCCeeeeEEeec-----------------cceeceeE
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILV-TS-NDSRIRLYDLRDLNLSCKYKGY-----------------VNVSSQIK  299 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~-~d~~i~i~d~~~~~~~~~~~~~-----------------~~~~~v~~  299 (408)
                                           |.....++ ++ ..+.|.+|++.+|.+...+...                 ........
T Consensus      1251 ---------------------~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~ 1309 (1431)
T KOG1240|consen 1251 ---------------------PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS 1309 (1431)
T ss_pred             ---------------------CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee
Confidence                                 12223333 33 5788999999988766655432                 11111223


Q ss_pred             EEEcCCCCEEEEecCCceEEEeeccccCcc----------cccc-------------------cc---------------
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKTHHDYAK----------FSSV-------------------RR---------------  335 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----------~~~~-------------------~~---------------  335 (408)
                      .++..-+.++.+|+.|..|+.||.......          +...                   ..               
T Consensus      1310 ~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~ 1389 (1431)
T KOG1240|consen 1310 CGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQK 1389 (1431)
T ss_pred             eecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccc
Confidence            344445668899999999999998654322          0000                   00               


Q ss_pred             CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          336 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       336 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      ........-..|..+|+++++...               +-.+|++++.||.|+||.
T Consensus      1390 ~~~~~~~ps~~H~d~Itdma~~~~---------------~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1390 LRPGPSDPSTYHHDPITDMATLKS---------------EQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccCCCCCcccccchhhhhhhhcc---------------CccEEEEecCCCeeeecC
Confidence            000000112347778888888763               446899999999999994

>KOG4378|consensus

Probab=99.90  E-value=4.4e-22  Score=161.04  Aligned_cols=273  Identities=14%  Similarity=0.126  Sum_probs=188.8

Q ss_pred             CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988           43 LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        43 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                      ....++|||...........-......+.++.|+.... .+++.+.|..+++|.-...... .......     ....-.
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~-Vp~~~k~-----~gd~~~   83 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE-VPRVRKL-----TGDNAF   83 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc-cceeecc-----ccchHH
Confidence            33579999997755442111111123488999987654 2344456778899975543111 1111111     112344


Q ss_pred             EEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecc
Q psy988          122 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       122 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (408)
                      |++......++++|+..+.|+|||++...+.+.++.|.  ..|+++.++-...||++++..|.|.+..+.++...     
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-----  156 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-----  156 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEeccCCcEEEEecccCccc-----
Confidence            55555556899999999999999999766667777776  45889999999999999999999999998764322     


Q ss_pred             cCCCccccccccc-cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC
Q psy988          202 RDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  280 (408)
Q Consensus       202 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  280 (408)
                             ..+... ...|+-+.++|..+.+                                  |.+++.+|.|.+||+.
T Consensus       157 -------t~f~~~sgqsvRll~ys~skr~l----------------------------------L~~asd~G~VtlwDv~  195 (673)
T KOG4378|consen  157 -------TTFTIDSGQSVRLLRYSPSKRFL----------------------------------LSIASDKGAVTLWDVQ  195 (673)
T ss_pred             -------cceecCCCCeEEEeeccccccee----------------------------------eEeeccCCeEEEEecc
Confidence                   122222 2334455555555444                                  5667999999999999


Q ss_pred             CCeeeeEEeeccceeceeEEEEcCC-CCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCC
Q psy988          281 DLNLSCKYKGYVNVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  359 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  359 (408)
                      ...+...+.. .+..+...+||+|. ..+|++.+.|..|.+||+...            .....+. -..+.+.++|++ 
T Consensus       196 g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~------------~s~~~l~-y~~Plstvaf~~-  260 (673)
T KOG4378|consen  196 GMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ------------ASTDRLT-YSHPLSTVAFSE-  260 (673)
T ss_pred             CCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccc------------cccceee-ecCCcceeeecC-
Confidence            8777665542 23346778999995 557788999999999999864            2222232 456789999999 


Q ss_pred             chhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          360 PELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       360 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                                     +|.+|+.|...|.|..||++..+..
T Consensus       261 ---------------~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  261 ---------------CGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             ---------------CceEEEeecCCceEEEEecccCCCC
Confidence                           9999999999999999999987643

>KOG0322|consensus

Probab=99.90  E-value=2.4e-22  Score=149.51  Aligned_cols=297  Identities=15%  Similarity=0.167  Sum_probs=190.8

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      +...+. |.+.|+++.|-. ++ +|.+|..-|.|++|++++.....  .+. .+...|+.+.--|+ ..+.+-+.|+.+.
T Consensus         6 P~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~--~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~   80 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLP--LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI   80 (323)
T ss_pred             CeeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccch--hhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence            334444 999999999986 44 59999999999999999987663  455 56788999998887 5688889999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-----CCC----eEEEeeCCC-eEEEEEccCcccceeecC--ccc
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-----GED----KILVTSNDS-RIRLYDLRDLNLSCKYKG--YVN  160 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~~~--~~~  160 (408)
                      +|++..........+           .++++-|.+     +++    .++.-++.. .+.+-|......+.....  ...
T Consensus        81 lw~ia~s~~i~i~Si-----------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~K  149 (323)
T KOG0322|consen   81 LWTIAYSAFISIHSI-----------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSK  149 (323)
T ss_pred             EEEccCcceEEEeee-----------eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccc
Confidence            999987554332221           222233321     111    112211110 122222221111111111  111


Q ss_pred             cccceEEEEec-CCC--EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          161 VSSQIKASFSH-DGK--YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       161 ~~~~~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      ...+++..+.. ++.  .+++|.++|.+.+||+.++......+  ...+.......|..+|.++.+.+.           
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~~~kv~~~~ash~qpvlsldyas~-----------  216 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--QSSKVESPNASHKQPVLSLDYASS-----------  216 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--cccccccchhhccCcceeeeechh-----------
Confidence            22344443222 333  36778899999999998763332211  111223334455666666665542           


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--eeee-EEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--NLSC-KYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                              -..=++|+.+..+..|.+...  .+.. ...... ...+..+..-||++.+|+++.
T Consensus       217 ------------------------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv~gvrIRpD~KIlATAGW  271 (323)
T KOG0322|consen  217 ------------------------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGVSGVRIRPDGKILATAGW  271 (323)
T ss_pred             ------------------------hcCCcCCCccccceeeeeccccCcccccceEEec-CCCccceEEccCCcEEeeccc
Confidence                                    222355677778888887643  2211 111111 224667889999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      |+.|++|+.++.            .++..+.-|.+.|++++|+|                +..++|.++.|++|.+|++
T Consensus       272 D~RiRVyswrtl------------~pLAVLkyHsagvn~vAfsp----------------d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  272 DHRIRVYSWRTL------------NPLAVLKYHSAGVNAVAFSP----------------DCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCcEEEEEeccC------------CchhhhhhhhcceeEEEeCC----------------CCchhhhccCCceEEeeec
Confidence            999999999987            67888999999999999999                8889999999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.6e-19  Score=159.96  Aligned_cols=305  Identities=28%  Similarity=0.460  Sum_probs=218.2

Q ss_pred             CCceEEEEeccC-CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISR-KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~-~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .|+.+.+||... ......+. |...|..++|+| ++.++++++. |+.+++|+...+...  ..+.+|...|.+++|+|
T Consensus       132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~  208 (466)
T COG2319         132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPL--STLAGHTDPVSSLAFSP  208 (466)
T ss_pred             CCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceE--EeeccCCCceEEEEEcC
Confidence            378999999998 56666555 999999999999 8888888885 999999999886555  57777999999999999


Q ss_pred             CCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceee
Q psy988           78 NGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKY  155 (408)
Q Consensus        78 ~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~  155 (408)
                      ++. .+++++.|+.+++||.........    .   ...|.... ...|+|++..+++++.++.+++|+.+.... ...+
T Consensus       209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~----~---~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (466)
T COG2319         209 DGGLLIASGSSDGTIRLWDLSTGKLLRS----T---LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL  280 (466)
T ss_pred             CcceEEEEecCCCcEEEEECCCCcEEee----e---cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE
Confidence            998 555559999999998774443332    1   12222333 228999998888999999999999987665 3333


Q ss_pred             cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      ..+  ...+.++.|.|++..+++++.|+.+.+|+...........          ...|...+..+.+ +          
T Consensus       281 ~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~----------  337 (466)
T COG2319         281 SGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----------LKGHEGPVSSLSF-S----------  337 (466)
T ss_pred             ecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----------ecccCCceEEEEE-C----------
Confidence            233  3557788999988888888889889999876543221100          1233333444444 2          


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE-ec
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GS  313 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~  313 (408)
                                              +++..++.+ ..|+.+.+|+............. .  .+..+.+++ ...+.. +.
T Consensus       338 ------------------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~  389 (466)
T COG2319         338 ------------------------PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-S--NVLSVSFSP-DGRVVSSGS  389 (466)
T ss_pred             ------------------------CCCCEEEEeecCCCcEEeeecCCCceeEEecCC-c--eEEEEEECC-CCCEEEEec
Confidence                                    122334444 67789999999887722222221 1  266788888 544444 68


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      .++.+.+|+.....            .......+...+....+++                ++..+++++.++.+++|+.
T Consensus       390 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~  441 (466)
T COG2319         390 TDGTVRLWDLSTGS------------LLRNLDGHTSRVTSLDFSP----------------DGKSLASGSSDNTIRLWDL  441 (466)
T ss_pred             CCCceEEEecccCe------------eeeeccCCCCcEEEEEECC----------------CCcEEEEecCCCcEEEEec
Confidence            89999999998752            2222222227788999999                8889999999999999999


Q ss_pred             CC
Q psy988          394 KT  395 (408)
Q Consensus       394 ~~  395 (408)
                      ..
T Consensus       442 ~~  443 (466)
T COG2319         442 KT  443 (466)
T ss_pred             cC
Confidence            87

>KOG2919|consensus

Probab=99.90  E-value=1.4e-21  Score=149.64  Aligned_cols=264  Identities=17%  Similarity=0.237  Sum_probs=190.1

Q ss_pred             CCceEEEEeccC-------C-------eeEeEEEeCCceEEEEEc-------CCCCCEEEEEeCCCcEEEEecCCCCcee
Q psy988            1 MDKTVRLWHISR-------K-------ECLCCFQHIDFVTAICFH-------PRDDRYFLSGSLDGKLRLWNIPDKKVAV   59 (408)
Q Consensus         1 ~Dg~i~vwd~~~-------~-------~~~~~~~h~~~v~~~~~s-------p~~~~~l~t~~~dg~i~iw~~~~~~~~~   59 (408)
                      .|..+.+|++..       .       .....+...+.|...+|-       | +..++|+.+.+.-|++||.-+|+...
T Consensus        69 edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lra  147 (406)
T KOG2919|consen   69 EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRA  147 (406)
T ss_pred             ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeeccccCceeeeecccccccc
Confidence            367788998732       1       111122256778888875       5 77889999999999999999998775


Q ss_pred             eeeecCCce---eeEEEEEecCCCEEEEEecCCEEEEEecc-CCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEE
Q psy988           60 WNEVEGQTK---LITAANFCENGKFAVVGSYDGRCIFYTTD-QLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILV  134 (408)
Q Consensus        60 ~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  134 (408)
                      ......|..   ...+++|+|||.+|++| ....|++||+. .+...... .....+..+..+-+.+++|+|-.. .+++
T Consensus       148 Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy-~t~~~~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  148 SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVY-TTVTKGKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcch-hhhhcccccccceeeeeeccCCCCcceee
Confidence            444444543   34689999999999876 67899999994 33322111 112222344557899999999554 8888


Q ss_pred             eeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCcccccccc
Q psy988          135 TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  213 (408)
Q Consensus       135 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      ++....+-||.-..+.++..+-+|.+.  |+.++|.++|+.|++|.. +-.|..||++..           ..++..+..
T Consensus       226 gsY~q~~giy~~~~~~pl~llggh~gG--vThL~~~edGn~lfsGaRk~dkIl~WDiR~~-----------~~pv~~L~r  292 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLGGHGGG--VTHLQWCEDGNKLFSGARKDDKILCWDIRYS-----------RDPVYALER  292 (406)
T ss_pred             ecccceeeeEecCCCCceeeecccCCC--eeeEEeccCcCeecccccCCCeEEEEeehhc-----------cchhhhhhh
Confidence            888889999988888888888776655  889999999999999986 668999999753           233333443


Q ss_pred             ccc-eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC-CeeeeEEeec
Q psy988          214 HNA-VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGY  291 (408)
Q Consensus       214 ~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~  291 (408)
                      |.. .-..+.                                 ....|++++|++|+.||.|++||+++ +..+..+..+
T Consensus       293 hv~~TNQRI~---------------------------------FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~  339 (406)
T KOG2919|consen  293 HVGDTNQRIL---------------------------------FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY  339 (406)
T ss_pred             hccCccceEE---------------------------------EecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence            332 111222                                 23467788999999999999999998 6666666665


Q ss_pred             cceeceeEEEEcCCCCEEEEecCC
Q psy988          292 VNVSSQIKASFSHDGKYIVSGSEN  315 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~~~l~~~~~d  315 (408)
                      ..  .+..++++|--.++|+++..
T Consensus       340 sd--~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  340 SD--TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cc--cccceecCcccceeeeccCc
Confidence            54  77889999998888887654

>KOG2445|consensus

Probab=99.90  E-value=3.8e-21  Score=146.31  Aligned_cols=250  Identities=14%  Similarity=0.216  Sum_probs=168.0

Q ss_pred             CCceEEEEeccCC----eeEeEEE-eCCceEEEEEc-CCCCCEEEEEeCCCcEEEEecCC-------CCceeeeeecCCc
Q psy988            1 MDKTVRLWHISRK----ECLCCFQ-HIDFVTAICFH-PRDDRYFLSGSLDGKLRLWNIPD-------KKVAVWNEVEGQT   67 (408)
Q Consensus         1 ~Dg~i~vwd~~~~----~~~~~~~-h~~~v~~~~~s-p~~~~~l~t~~~dg~i~iw~~~~-------~~~~~~~~~~~~~   67 (408)
                      .|++|+|||..+.    .+....+ |.+.|..+.|. |.-|+.+|+++.|+++.||.-..       .+......+....
T Consensus        33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr  112 (361)
T KOG2445|consen   33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR  112 (361)
T ss_pred             CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC
Confidence            3899999996433    3444555 99999999995 55799999999999999998632       1233345677778


Q ss_pred             eeeEEEEEecC--CCEEEEEecCCEEEEEeccCCeeeEEEEEeecc-----ccccCCCCeEEEeeCCC---CCeEEEeeC
Q psy988           68 KLITAANFCEN--GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR-----GKNATGRKISGIEPMPG---EDKILVTSN  137 (408)
Q Consensus        68 ~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~---~~~l~~~~~  137 (408)
                      ..|+.+.|.|.  |-.|++++.||.+|||+....-....-.+....     ....+..+..|+.|+|.   ..+|++|+.
T Consensus       113 ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~  192 (361)
T KOG2445|consen  113 SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSD  192 (361)
T ss_pred             cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcc
Confidence            89999999984  788999999999999997654433322221111     12234457889999973   457777766


Q ss_pred             C-----CeEEEEEccCcc----cceeecCccccccceEEEEecCC----CEEEEeecCceEEEeeeccceeeeeecccCC
Q psy988          138 D-----SRIRLYDLRDLN----LSCKYKGYVNVSSQIKASFSHDG----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  204 (408)
Q Consensus       138 d-----g~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  204 (408)
                      +     +.++||....+.    .+..+.++.  ..|..++|.|+-    ..|++++.|| |+||.+............  
T Consensus       193 e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~--dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~--  267 (361)
T KOG2445|consen  193 EDAPHLNKVKIYEYNENGRKWLKVAELPDHT--DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV--  267 (361)
T ss_pred             cCCccccceEEEEecCCcceeeeehhcCCCC--CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc--
Confidence            5     478888765433    233344444  458899999953    4689999999 999998642211100000  


Q ss_pred             CccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC
Q psy988          205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  280 (408)
Q Consensus       205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  280 (408)
                                        ..|+..       ..-....+..+..|..++..+.|.-.|..|++.+.||.||+|...
T Consensus       268 ------------------~~~~~~-------~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  268 ------------------LAPDLM-------TDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ------------------cCCCCc-------cccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence                              000000       000111222344677778888888888889999999999999854

>KOG1007|consensus

Probab=99.90  E-value=3.3e-21  Score=145.40  Aligned_cols=272  Identities=17%  Similarity=0.208  Sum_probs=189.6

Q ss_pred             CceEEEEeccCCe--eEe-EE-EeCCceEEEEEcCCCCCEEEEEeCC-------CcEEEEecCCCCce-------eeeee
Q psy988            2 DKTVRLWHISRKE--CLC-CF-QHIDFVTAICFHPRDDRYFLSGSLD-------GKLRLWNIPDKKVA-------VWNEV   63 (408)
Q Consensus         2 Dg~i~vwd~~~~~--~~~-~~-~h~~~v~~~~~sp~~~~~l~t~~~d-------g~i~iw~~~~~~~~-------~~~~~   63 (408)
                      |+.|.+-+++.+.  ... .+ .|.+.|+.++-+|.+..+|+|+..+       -.+.||.+......       ....+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            4566666654432  222 22 3889999999999888888887653       24789998653211       11233


Q ss_pred             c-CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCCCe
Q psy988           64 E-GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSNDSR  140 (408)
Q Consensus        64 ~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~  140 (408)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|+++....+......  .....+....++-+|+|  +++.+++. .|++
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s--s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~t  194 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS--SESAEMRHSFTSGAWSPHHDGNQVATT-SDST  194 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc--cccccccceecccccCCCCccceEEEe-CCCc
Confidence            3 4456899999999999998875 889999999987653221111  11122445778889998  56666655 4689


Q ss_pred             EEEEEccCcccceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +..||+++.+....+.... ...+..+.|+|+.++ |++++.||.|++||.+.           ...++..+.+|...|.
T Consensus       195 l~~~D~RT~~~~~sI~dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~-----------tk~pv~el~~HsHWvW  262 (370)
T KOG1007|consen  195 LQFWDLRTMKKNNSIEDAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK-----------TKFPVQELPGHSHWVW  262 (370)
T ss_pred             EEEEEccchhhhcchhhhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccC-----------CCccccccCCCceEEE
Confidence            9999999887766654322 234778999998765 78899999999999974           3456778889999999


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-----------------
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-----------------  282 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------  282 (408)
                      ++.|+|....|                                  +++++.|..|.+|-..+-                 
T Consensus       263 ~VRfn~~hdqL----------------------------------iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~  308 (370)
T KOG1007|consen  263 AVRFNPEHDQL----------------------------------ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESED  308 (370)
T ss_pred             EEEecCccceE----------------------------------EEecCCCceeEEEeccccccccccccccccccCcc
Confidence            99999876665                                  566777777777754321                 


Q ss_pred             ------------eeeeEEeeccceeceeEEEEcCCCC-EEEEecCCceEEEeeccc
Q psy988          283 ------------NLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       283 ------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~  325 (408)
                                  ..+.++..|.  ..|.+++||.-.. .+|+-+.||.+.|=.+..
T Consensus       309 ~dseer~kpL~dg~l~tydehE--DSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  309 EDSEERVKPLQDGQLETYDEHE--DSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hhhHHhcccccccccccccccc--cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                        1122344444  3789999998555 567789999998877653

>KOG1963|consensus

Probab=99.90  E-value=5.4e-20  Score=159.09  Aligned_cols=356  Identities=15%  Similarity=0.208  Sum_probs=236.1

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCC--CEEEEEeCCCcEEEEecCCCCceeeeeecCCce----------
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDD--RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK----------   68 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------   68 (408)
                      +..|.||...+++++..+. |..+++.+.+.|...  .++.+++.||.|++||...+..........+..          
T Consensus        36 ~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~  115 (792)
T KOG1963|consen   36 GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQAD  115 (792)
T ss_pred             CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhC
Confidence            5689999999999999887 999999999998444  477899999999999997765432111110000          


Q ss_pred             ----------------------------------------------eeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988           69 ----------------------------------------------LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH  102 (408)
Q Consensus        69 ----------------------------------------------~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  102 (408)
                                                                    .-.++.+++.|.+.+.. .+..+.+|....... 
T Consensus       116 ~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~-  193 (792)
T KOG1963|consen  116 ISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTK-  193 (792)
T ss_pred             ccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccce-
Confidence                                                          01223333333332222 334455666554331 


Q ss_pred             EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC--cccceeecCccccccceEEEEecCCCEEEEee
Q psy988          103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                         ..........|.-.+++.+++|++++++++..||.|.+|.--.  ......-.-|-+...+.+++|+++|.+|++|+
T Consensus       194 ---~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG  270 (792)
T KOG1963|consen  194 ---HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG  270 (792)
T ss_pred             ---eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc
Confidence               1111222234555689999999999999999999999996432  22211122234445588999999999999999


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC----------CCceee-----
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS----------ESTGYV-----  245 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-----  245 (408)
                      ..|.+.+|.+.++...             .++.-.++|..+.++||+........+..-          ...+.-     
T Consensus       271 ~E~VLv~Wq~~T~~kq-------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  271 REGVLVLWQLETGKKQ-------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             cceEEEEEeecCCCcc-------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            9999999999876532             345557889999999999887665443320          000000     


Q ss_pred             ---ecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec---------cceeceeEEEEcCCCCEEEEec
Q psy988          246 ---LNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY---------VNVSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       246 ---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~  313 (408)
                         ......-.+.++++|.-+.++..+..|.|.+||+.+.+.+..+..-         .....+++++.+-.|.++++.-
T Consensus       338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence               1112344667888997788888899999999999887766665421         1234567788888899999853


Q ss_pred             --------CC--ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe
Q psy988          314 --------EN--QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD  383 (408)
Q Consensus       314 --------~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  383 (408)
                              .|  -.+++|-.+.....+..       .......|...+...++.+..              .....++++
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L-------~T~I~~PH~~~~vat~~~~~~--------------rs~~~vta~  476 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYNPNSKTFIL-------NTKINNPHGNAFVATIFLNPT--------------RSVRCVTAS  476 (792)
T ss_pred             eeehhhhccCceEEEEEEEEcCCcceeEE-------EEEEecCCCceeEEEEEecCc--------------ccceeEEec
Confidence                    23  35788988775443321       112234677776666665510              223899999


Q ss_pred             cCCeEEEEeCCCC
Q psy988          384 FNGVIRVFLNKTK  396 (408)
Q Consensus       384 ~dg~v~iw~~~~~  396 (408)
                      .||.++||-+..-
T Consensus       477 ~dg~~KiW~~~~~  489 (792)
T KOG1963|consen  477 VDGDFKIWVFTDD  489 (792)
T ss_pred             cCCeEEEEEEecc
Confidence            9999999998443

>KOG2110|consensus

Probab=99.89  E-value=2.7e-19  Score=139.80  Aligned_cols=240  Identities=15%  Similarity=0.201  Sum_probs=172.7

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC--CEEEEEeccCCe
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD--GRCIFYTTDQLK  100 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~  100 (408)
                      ..+..+.|+. +...|..|+.|| .++|+.+.....  .........|..+-|+..  ++|..+.+  +.+++.+.+...
T Consensus         6 ~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~--~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    6 PTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKC--FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             cceeeeeecc-ceeEEEccCCCc-eeEEecCchHHh--hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence            3466777888 888888888887 577777654331  222333445666667654  45544443  458888887766


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc-cccccceEEEEecCCCEEEEe
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      .+-.....         .+|.++.++  .++|+++-++ .|+|||+++.+++.++... .+...+.++.+++.+.+++.-
T Consensus        80 ~ICe~~fp---------t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp  147 (391)
T KOG2110|consen   80 TICEIFFP---------TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP  147 (391)
T ss_pred             eEEEEecC---------CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence            55544433         378888886  5677777664 4999999999998887654 444446666666677788864


Q ss_pred             e--cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          180 S--ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       180 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +  ..|.|.+||..+-            +....+.                                   .|.+.+.+++
T Consensus       148 ~s~t~GdV~l~d~~nl------------~~v~~I~-----------------------------------aH~~~lAala  180 (391)
T KOG2110|consen  148 GSTTSGDVVLFDTINL------------QPVNTIN-----------------------------------AHKGPLAALA  180 (391)
T ss_pred             CCCCCceEEEEEcccc------------eeeeEEE-----------------------------------ecCCceeEEE
Confidence            3  4689999998542            2223333                                   4455555555


Q ss_pred             cCCCCCeEEEecCCCe-EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          258 PMPGEDKILVTSNDSR-IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      |+++|.+||+++..|+ ||||.+.+|+.+.+|........|.+++|+|++++|++.+..++|++|.+....
T Consensus       181 fs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  181 FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            6666777899999887 799999999999999877778889999999999999999999999999998654

>KOG0649|consensus

Probab=99.89  E-value=4.2e-20  Score=136.12  Aligned_cols=288  Identities=16%  Similarity=0.243  Sum_probs=192.0

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCC---------CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPD---------KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      .|.+-+++| .+++|+.|..+|.|.+..+.+         ++. .....++|.++|..++|.  ..+|++|+ ||.|+=|
T Consensus        12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~-~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL-KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCc-ceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            456668999 999999999999999999854         222 224558999999999997  45667765 5999999


Q ss_pred             eccCCeeeEEE------EEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEE
Q psy988           95 TTDQLKYHTQI------HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  168 (408)
Q Consensus        95 ~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  168 (408)
                      ...........      ..+.... ...--.|+++...|..+.++.++.|+.++-||+++|+..+.+++|..-  +.++.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY--vH~vv  163 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY--VHSVV  163 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce--eeeee
Confidence            87654431100      0000000 111236899999999999999889999999999999999999998865  55666


Q ss_pred             EecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC
Q psy988          169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA  248 (408)
Q Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (408)
                      --.....+++|++||++++||+++++........+....+   +.|                                  
T Consensus       164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l---Rp~----------------------------------  206 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL---RPD----------------------------------  206 (325)
T ss_pred             ecccCcceeecCCCccEEEEeccccceeEEeccccChhhc---Ccc----------------------------------
Confidence            5445557999999999999999887654332222111111   111                                  


Q ss_pred             CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          249 TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                      -+..|.+++.  +..++++| ....+.+|.+++.++.+.++-..   .+..+.|.  .+.+++++..+.|.-|.+..-  
T Consensus       207 ~g~wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfpipa---~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv--  276 (325)
T KOG0649|consen  207 WGKWIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFPIPA---RVHLVDFV--DDCVLIGGEGNHVQSYTLNGV--  276 (325)
T ss_pred             cCceeEEEec--cCceEEec-CCCceeEEeccCCCceEEEeccc---ceeEeeee--cceEEEeccccceeeeeeccE--
Confidence            1112222222  34456654 45679999999999988887543   34566774  457888888889999988752  


Q ss_pred             cccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          329 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                                 +-..........++..|+..               --++|-.++....+.|+.
T Consensus       277 -----------l~a~ip~~s~~c~s~s~~~~---------------p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  277 -----------LQANIPVESTACYSASWQTS---------------PIKFISIAGFSNKLHILK  314 (325)
T ss_pred             -----------EEEeccCCccceeeecccCC---------------ceEEEEecccceeeeeee
Confidence                       22223333344566666541               134566667777777654

>KOG1517|consensus

Probab=99.89  E-value=8.2e-21  Score=167.16  Aligned_cols=304  Identities=14%  Similarity=0.183  Sum_probs=201.9

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC---CceeeEEEEEec--CCCEEEEEecCCEEEEEeccC
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG---QTKLITAANFCE--NGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      +-..+.|+| -...++++...-.|++||.+.++..  ..+..   ....|+.+.+-.  |..++++|+.||.|+||+--.
T Consensus      1066 ~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCceeeecC-CCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            567788999 7778888887788999999988765  33332   245688888865  456899999999999997543


Q ss_pred             Ce-eeEEEE--Eeecccc-ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe-cCC
Q psy988           99 LK-YHTQIH--VRSTRGK-NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDG  173 (408)
Q Consensus        99 ~~-~~~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  173 (408)
                      .. ....+.  ....... ....+.-.-+.|.....+|++++.-..|+|||.........+..... ..++++.-+ ..|
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHG 1221 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccccCC
Confidence            32 111110  1111111 11111114467877778888888789999999988776665544322 234444322 347


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccce--EEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV--VTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      +.+++|..||.|++||.+....         ...+...+.|+..  |..+.+.+.|-                       
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~---------ds~v~~~R~h~~~~~Iv~~slq~~G~----------------------- 1269 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPP---------DSLVCVYREHNDVEPIVHLSLQRQGL----------------------- 1269 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCc---------cccceeecccCCcccceeEEeecCCC-----------------------
Confidence            8999999999999999875422         2233444555544  55555555432                       


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe--eccc-eeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK--GYVN-VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                                 ..|++|+.+|.|++||++.......+.  .+.. ....+++..+++...+|+|+. +.|+||++.....
T Consensus      1270 -----------~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1270 -----------GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             -----------cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence                       248899999999999999742222222  2221 224889999999999999998 9999999986432


Q ss_pred             cccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          329 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ....   ..+   ..+....+.+.|++|+|                ---+||.|..|..|.||....++
T Consensus      1338 ~~~k---~n~---~F~~q~~gs~scL~FHP----------------~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIK---YNP---GFMGQRIGSVSCLAFHP----------------HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cccc---cCc---ccccCcCCCcceeeecc----------------hhHhhhhccCCceEEEeecCCcC
Confidence            2110   000   01112235679999999                77789999999999999987655

>KOG1538|consensus

Probab=99.89  E-value=1.5e-21  Score=163.77  Aligned_cols=256  Identities=13%  Similarity=0.118  Sum_probs=193.7

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |..+.|||...|..+++++ |++.|++++|+. ||+++|+|+.|..|.+|+.+-....    -..|...|.|+.|+|-.+
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~L----kYSH~D~IQCMsFNP~~h  106 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGIL----KYSHNDAIQCMSFNPITH  106 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccccee----eeccCCeeeEeecCchHH
Confidence            5678999999999999998 999999999999 9999999999999999986544332    246899999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee-cCcc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYV  159 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~  159 (408)
                      .|++++-. ..-+|+.+.......          .....+.+++|..||.+|+.|-.+|+|.+=+.. ++....+ ....
T Consensus       107 ~LasCsLs-dFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg  174 (1081)
T KOG1538|consen  107 QLASCSLS-DFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGG  174 (1081)
T ss_pred             Hhhhcchh-hccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCC
Confidence            99998764 577888765432211          112478999999999999999999999987654 3333333 2223


Q ss_pred             ccccceEEEEecCC-----CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          160 NVSSQIKASFSHDG-----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       160 ~~~~~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      ...++.+++|+|..     ..+++.....++.+|.+.....                 +   .-.               
T Consensus       175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-----------------g---k~r---------------  219 (1081)
T KOG1538|consen  175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-----------------G---KDR---------------  219 (1081)
T ss_pred             CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee-----------------c---ccc---------------
Confidence            34568899999854     3466666666666666532100                 0   000               


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                   .-+-.+.++.+.++|.+++.|+.|+.+.+|. +.|-.+.++....+  .|..++..|++++++.|+.
T Consensus       220 -------------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  220 -------------ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             -------------cCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccce--eEEEEEEccCCceEEEEEc
Confidence                         1122446778888999999999999999996 45666666665444  8899999999999999999


Q ss_pred             CceEEEeeccc
Q psy988          315 NQCIYIWKTHH  325 (408)
Q Consensus       315 dg~i~iw~~~~  325 (408)
                      ||+|..|++-.
T Consensus       284 DGTiACyNl~f  294 (1081)
T KOG1538|consen  284 DGTIACYNLIF  294 (1081)
T ss_pred             cCeeehhhhHH
Confidence            99999998743

>KOG0290|consensus

Probab=99.89  E-value=1e-20  Score=142.91  Aligned_cols=271  Identities=13%  Similarity=0.162  Sum_probs=170.0

Q ss_pred             CeeEeEEEeCCceEEEEEc--CCCCCEEEEEeC----CCcEEEEecCC--CCceeeeeecCCceeeEEEEEecCCC----
Q psy988           13 KECLCCFQHIDFVTAICFH--PRDDRYFLSGSL----DGKLRLWNIPD--KKVAVWNEVEGQTKLITAANFCENGK----   80 (408)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s--p~~~~~l~t~~~----dg~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~----   80 (408)
                      .+.+..+.-.-.+.++.|+  |+.+.+||.|+.    .+.|.|-.+..  ++.... .-..|.-+++.+.|.|+..    
T Consensus        35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED-ANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc-CCCCCCCCccceEecCCccccCc
Confidence            3455666666789999998  334667888875    46677766543  443322 2246889999999999753    


Q ss_pred             -EEEEEecCCEEEEEeccCCeeeEEEE-EeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           81 -FAVVGSYDGRCIFYTTDQLKYHTQIH-VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 -~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                       +||++  +..+++|.+...+...... .........+..++++..|+.-                              
T Consensus       114 dlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~------------------------------  161 (364)
T KOG0290|consen  114 DLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV------------------------------  161 (364)
T ss_pred             chhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC------------------------------
Confidence             45554  3479999987532111110 0011111222334444444431                              


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                                   +.++|.+.+-|-+..|||++++..         ...-.++-.|...|..++|...+..         
T Consensus       162 -------------dp~~igtSSiDTTCTiWdie~~~~---------~~vkTQLIAHDKEV~DIaf~~~s~~---------  210 (364)
T KOG0290|consen  162 -------------DPNLIGTSSIDTTCTIWDIETGVS---------GTVKTQLIAHDKEVYDIAFLKGSRD---------  210 (364)
T ss_pred             -------------CcceeEeecccCeEEEEEEeeccc---------cceeeEEEecCcceeEEEeccCccc---------
Confidence                         334444444555555555543210         0011233445555555555554433         


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE-eeccceeceeEEEEcC-CCCEEEEecCC-
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYVNVSSQIKASFSH-DGKYIVSGSEN-  315 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~d-  315 (408)
                                               .|++.+.||.+|+||++..+....+ +......+...++|++ |-+++|+-..| 
T Consensus       211 -------------------------~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS  265 (364)
T KOG0290|consen  211 -------------------------VFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS  265 (364)
T ss_pred             -------------------------eEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence                                     3677788888888888876544333 2333245778899988 56788876555 


Q ss_pred             ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ..|.|.|++...           ..+..+++|.+.|++++|.|.               ....|+|||+|..+.+||+..
T Consensus       266 ~~V~iLDiR~P~-----------tpva~L~~H~a~VNgIaWaPh---------------S~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  266 NKVVILDIRVPC-----------TPVARLRNHQASVNGIAWAPH---------------SSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ceEEEEEecCCC-----------cceehhhcCcccccceEecCC---------------CCceeeecCCcceEEEEeccc
Confidence            579999998753           567889999999999999995               678999999999999999987


Q ss_pred             CCC
Q psy988          396 KPK  398 (408)
Q Consensus       396 ~~~  398 (408)
                      ...
T Consensus       320 ~~~  322 (364)
T KOG0290|consen  320 MPR  322 (364)
T ss_pred             ccc
Confidence            654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=6.5e-19  Score=156.10  Aligned_cols=309  Identities=25%  Similarity=0.402  Sum_probs=220.6

Q ss_pred             CCceEEEEeccCCe-eEeEEE-eC-CceEEEEE-cCCCCC-EEEEEeC-CCcEEEEecCC-CCceeeeeecCCceeeEEE
Q psy988            1 MDKTVRLWHISRKE-CLCCFQ-HI-DFVTAICF-HPRDDR-YFLSGSL-DGKLRLWNIPD-KKVAVWNEVEGQTKLITAA   73 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~-~~~~~~-h~-~~v~~~~~-sp~~~~-~l~t~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~   73 (408)
                      .|+.+.+|+...+. ....+. +. ..+..+.+ ++ ++. +++..+. |+.+.+|+... ....  ..+..|...|..+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~  161 (466)
T COG2319          85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLI--RTLEGHSESVTSL  161 (466)
T ss_pred             CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEE--EEEecCcccEEEE
Confidence            47899999999886 555554 33 37888887 88 666 5555445 99999999987 4433  6788999999999


Q ss_pred             EEecCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCccc
Q psy988           74 NFCENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNL  151 (408)
Q Consensus        74 ~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  151 (408)
                      .|+|++..+++++. |+.+++|+...........        .|...+.+++|+|++. .+++++.|+.|++||...+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~  233 (466)
T COG2319         162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA--------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL  233 (466)
T ss_pred             EECCCCCEEEecCCCCCceEEEEcCCCceEEeec--------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence            99999998888886 9999999998744333322        2567899999999988 444448899999999887766


Q ss_pred             ce-eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          152 SC-KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       152 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      .. .+..+.... +.  .|++++..+++++.|+.+++|+.......           ...+.                  
T Consensus       234 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------~~~~~------------------  281 (466)
T COG2319         234 LRSTLSGHSDSV-VS--SFSPDGSLLASGSSDGTIRLWDLRSSSSL-----------LRTLS------------------  281 (466)
T ss_pred             EeeecCCCCcce-eE--eECCCCCEEEEecCCCcEEEeeecCCCcE-----------EEEEe------------------
Confidence            66 466655543 22  79999988999999999999998653210           00002                  


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe--eccceeceeEEEEcCCCCE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK--GYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~  308 (408)
                                       .+...+.++.+.|++..+++++.|+.+.+||..+........  .+..  .+..+.|.+++..
T Consensus       282 -----------------~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  342 (466)
T COG2319         282 -----------------GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL  342 (466)
T ss_pred             -----------------cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence                             234455555666666667778888889999998877666665  4433  5777888434356


Q ss_pred             EEEe-cCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE-EecCC
Q psy988          309 IVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS-ADFNG  386 (408)
Q Consensus       309 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg  386 (408)
                      ++.+ ..|+.+.+|+.....            ...... ....+..+.+.+                + ..+.. +..++
T Consensus       343 ~~~~~~~d~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~----------------~-~~~~~~~~~~~  392 (466)
T COG2319         343 LVSGGSDDGTIRLWDLRTGK------------PLKTLE-GHSNVLSVSFSP----------------D-GRVVSSGSTDG  392 (466)
T ss_pred             EEEeecCCCcEEeeecCCCc------------eeEEec-CCceEEEEEECC----------------C-CCEEEEecCCC
Confidence            6655 678999999998752            111111 112278888887                5 44444 78899


Q ss_pred             eEEEEeCCCCCCccc
Q psy988          387 VIRVFLNKTKPKHSS  401 (408)
Q Consensus       387 ~v~iw~~~~~~~~~~  401 (408)
                      .+.+|+.........
T Consensus       393 ~~~~~~~~~~~~~~~  407 (466)
T COG2319         393 TVRLWDLSTGSLLRN  407 (466)
T ss_pred             ceEEEecccCeeeee
Confidence            999999987765433

>KOG1587|consensus

Probab=99.89  E-value=1.4e-20  Score=162.09  Aligned_cols=280  Identities=15%  Similarity=0.186  Sum_probs=188.1

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEE
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI  123 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  123 (408)
                      +.+.+|++......  .....-...|+++.|+| +..+++.|+.+|.|.+||++.......  .........|..++..+
T Consensus       222 ~~~~vW~~~~p~~P--e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP--ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--SGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCc--eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--cccccccccCCcCeEEE
Confidence            47999999887322  22333467899999999 467788889999999999998765221  11112234567799999


Q ss_pred             eeCCCCCe--EEEeeCCCeEEEEEccCccccee-e----cC-----ccccccceEEEEec-CCCEEEEeecCceEEEeee
Q psy988          124 EPMPGEDK--ILVTSNDSRIRLYDLRDLNLSCK-Y----KG-----YVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       124 ~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~~-~----~~-----~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~  190 (408)
                      .|..+...  +++++.||.|..|+++....... .    ..     ......++++.|.+ +...+++|+++|.|.-=+.
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            99875554  99999999999998875433111 0    01     12234467788887 4567999999998876332


Q ss_pred             ccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC
Q psy988          191 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN  270 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (408)
                      ........    ...+....+..|.++|.++.++|-                                   +..++..+.
T Consensus       378 ~g~~~~~~----~~~~~~~~~~~h~g~v~~v~~nPF-----------------------------------~~k~fls~g  418 (555)
T KOG1587|consen  378 KGYTPAPE----VSYKGHSTFITHIGPVYAVSRNPF-----------------------------------YPKNFLSVG  418 (555)
T ss_pred             cCCccccc----ccccccccccccCcceEeeecCCC-----------------------------------ccceeeeec
Confidence            21111100    001112233445555555555554                                   433444444


Q ss_pred             CCeEEEEEcC-CCeeeeEEeeccceeceeEEEEcCCC-CEEEEecCCceEEEeeccccCccccccccCccccceeeeeec
Q psy988          271 DSRIRLYDLR-DLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  348 (408)
Q Consensus       271 d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~  348 (408)
                      |.+++||... ...++..+..+..  .+++++|||.. ..++++..||.|.+||+.....          .++.....+.
T Consensus       419 DW~vriWs~~~~~~Pl~~~~~~~~--~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----------~Pv~s~~~~~  486 (555)
T KOG1587|consen  419 DWTVRIWSEDVIASPLLSLDSSPD--YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----------EPVLSQKVCS  486 (555)
T ss_pred             cceeEeccccCCCCcchhhhhccc--eeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----------CCcccccccc
Confidence            9999999987 5556655555433  68999999965 4677888899999999986532          2344444446


Q ss_pred             cceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          349 AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       349 ~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ...+.+.|++                .|+.|+.|+..|.+.+|++..
T Consensus       487 ~~l~~~~~s~----------------~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  487 PALTRVRWSP----------------NGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccceeecCC----------------CCcEEEEecCCCcEEEEEcCc
Confidence            6677888998                899999999999999999963

>KOG2394|consensus

Probab=99.88  E-value=6.6e-21  Score=155.72  Aligned_cols=285  Identities=15%  Similarity=0.204  Sum_probs=186.6

Q ss_pred             eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE-EEEeeccccccCCCCeEEEee-----CCCCCeEEEeeCCCeEEE
Q psy988           70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ-IHVRSTRGKNATGRKISGIEP-----MPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~i  143 (408)
                      +....++-.|++|+..- ...+.+|+.+....... +.......     ....|-+|     .|.+--++.+-.-|.|.+
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g-----t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~  199 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG-----TSPTCHDFNSFTATPKGLDLLIGFTTGQVQL  199 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC-----CCCceecccccccCCCCcceEEeeccCceEE
Confidence            44455555677776543 34788888875322111 11111111     12233333     456777899988899999


Q ss_pred             EEccCcccceee--cCccccccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          144 YDLRDLNLSCKY--KGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       144 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      .|....+..+.+  ........++++.|-|.+ ..++++-.+|.+++||.......       ...             +
T Consensus       200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-------t~p-------------~  259 (636)
T KOG2394|consen  200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA-------TAP-------------S  259 (636)
T ss_pred             ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC-------CCC-------------c
Confidence            998764433322  334455678999999854 45667778999999987321100       000             0


Q ss_pred             EEEeCCcceeeeec-CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          221 AVFAPCPELIIAQM-EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       221 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                      ....+++..+.... ...........+......|..++|+|||++||+.+.||.+||||..+.+++..++..-+  ...|
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG--GLLC  337 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG--GLLC  337 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc--ceEE
Confidence            01111222222111 11111233344444556899999999999999999999999999999888877766544  7889


Q ss_pred             EEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC---------
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD---------  370 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~---------  370 (408)
                      ++|||||+||++|++|-.|.||.+...            +.+..-++|.+.|+.++|.|   |.-......         
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~er------------RVVARGqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~  402 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEER------------RVVARGQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTF  402 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccc------------eEEEeccccccceeeEeecc---cccccccccccccccccc
Confidence            999999999999999999999999987            78888999999999999997   222222110         


Q ss_pred             -------------CCCC-------------cccEEEEEecCCeEEEEeCCCCC
Q psy988          371 -------------KSES-------------TGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       371 -------------~~s~-------------~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                                   ..|.             ..-.+.+.+.|-.+.+||+..-.
T Consensus       403 ~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  403 SDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             cchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence                         1111             23468899999999999997544

>KOG1334|consensus

Probab=99.88  E-value=9.7e-22  Score=158.61  Aligned_cols=311  Identities=18%  Similarity=0.239  Sum_probs=229.0

Q ss_pred             eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--CCEEEEEecCCEEEE
Q psy988           17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--GKFAVVGSYDGRCIF   93 (408)
Q Consensus        17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i   93 (408)
                      ..+. |.+.|..+.|+. .|..|++|+.|..|.+||+..+.... ....+|...|....|-|.  .+.+++++.||.+++
T Consensus       136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l-~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKL-SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCccc-ccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            3344 999999999999 99999999999999999999887654 456789999999899884  467999999999998


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCcc--c--cccceEEE
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGYV--N--VSSQIKAS  168 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~--~~~~~~~~  168 (408)
                      =.+.......     .......|.++|..++.-|+.. .|++++.|+.+.-+|++...+...+....  .  ......++
T Consensus       214 s~i~~t~~~e-----~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  214 SEILETGYVE-----NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             eeecccccee-----cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            7765443322     1222345667899999988654 57888999999999998876544433211  1  23456778


Q ss_pred             EecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          169 FSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       169 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      ..|... .+++++.|..+++||.+.-.....      ...+.            .|.|.                 ....
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~------n~~~~------------~f~p~-----------------hl~~  333 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEEN------NGVLD------------KFCPH-----------------HLVE  333 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccc------cchhh------------hcCCc-----------------cccc
Confidence            888554 799999999999999864221100      00001            11111                 1111


Q ss_pred             CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC--C----------eeee-EEeeccceeceeEEEE-cCCCCEEEEec
Q psy988          248 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--L----------NLSC-KYKGYVNVSSQIKASF-SHDGKYIVSGS  313 (408)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~----------~~~~-~~~~~~~~~~v~~~~~-s~~~~~l~~~~  313 (408)
                      ...-.|++++|+.++.-++++..|-.|+++.-..  |          ..+. .+++|.+...|-.+-| -|...|+++|+
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS  413 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS  413 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence            3344677888887777777778888899985332  2          1222 3788888777777764 68899999999


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      .-|.|.||+-.++            +.+..+.+...-|+||.=+|                ---+||++|-|.-|+||..
T Consensus       414 DCGhIFiW~K~t~------------eii~~MegDr~VVNCLEpHP----------------~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  414 DCGHIFIWDKKTG------------EIIRFMEGDRHVVNCLEPHP----------------HLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ccceEEEEecchh------------HHHHHhhcccceEeccCCCC----------------CCchhhccCCccceeeecC
Confidence            9999999999887            67777887777999999999                7789999999999999998


Q ss_pred             CCCC
Q psy988          394 KTKP  397 (408)
Q Consensus       394 ~~~~  397 (408)
                      .+.+
T Consensus       466 ~~~e  469 (559)
T KOG1334|consen  466 LTAE  469 (559)
T ss_pred             Cccc
Confidence            5544

>KOG1310|consensus

Probab=99.88  E-value=8.7e-21  Score=155.60  Aligned_cols=171  Identities=19%  Similarity=0.269  Sum_probs=129.0

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEecc
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~   97 (408)
                      +|++.|+|++|+. +|.+|++|+.|-.+.|||.-..+... ..-.+|...|.++.|-|  +.+.+++|..|..|+++|+.
T Consensus        48 GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   48 GHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             cccceecceeecC-CCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            4999999999999 99999999999999999998766654 45578999999999998  46789999999999999998


Q ss_pred             CCeeeEEE--EEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCccccee--------ecCccccccceE
Q psy988           98 QLKYHTQI--HVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCK--------YKGYVNVSSQIK  166 (408)
Q Consensus        98 ~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~~  166 (408)
                      ..+....-  ..........|...|..++..|++ +.+.++++||+|+-+|++.......        ..-........+
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~  205 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC  205 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence            53321110  011122233456788889999988 7888999999999999986321110        011112234567


Q ss_pred             EEEecC-CCEEEEeecCceEEEeeecc
Q psy988          167 ASFSHD-GKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       167 ~~~~~~-~~~l~~~~~dg~i~i~d~~~  192 (408)
                      +..+|. ..+|++|+.|-..++||.+.
T Consensus       206 ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  206 LTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             eeecCCCCceEEecCCCchhhhhhhhh
Confidence            888985 46789999999999999643

>KOG1188|consensus

Probab=99.88  E-value=6e-21  Score=147.31  Aligned_cols=282  Identities=15%  Similarity=0.181  Sum_probs=185.1

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc-eeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT-KLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~   78 (408)
                      .|+|++||..+++.+..+. |+..++.+.|... ....+.+|+.||+|++||++............+. .+..+++.+-+
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck  128 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK  128 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence            4899999999999999998 9999999999763 4677899999999999999987665545566665 56777777767


Q ss_pred             CCEEEEEec----CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccce
Q psy988           79 GKFAVVGSY----DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        79 ~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      ++.+++|..    +-.+.+||++..+....      .-...|...|+++.|+|. .+.|++|+.||.|.+||+......-
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~------~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD  202 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSEQQLLR------QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED  202 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccccchhh------hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh
Confidence            888888754    56899999998765211      112457789999999995 5678899999999999997543221


Q ss_pred             eec-CccccccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          154 KYK-GYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       154 ~~~-~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      .+. .......|-.+.|..++ +.|.+-+..+...+|+++.+........+.......                      
T Consensus       203 aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~----------------------  260 (376)
T KOG1188|consen  203 ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL----------------------  260 (376)
T ss_pred             hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH----------------------
Confidence            111 11223446778898877 458888889999999997654221111000000000                      


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CCeEEEEEcC---C---CeeeeEEeeccceeceeEEEEcC
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLR---D---LNLSCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~---~---~~~~~~~~~~~~~~~v~~~~~s~  304 (408)
                           .......+++..+        ...+...+++++. -++..++-+.   +   .+.+..+.++ +...|.++.|..
T Consensus       261 -----r~~~~~dY~I~~~--------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~  326 (376)
T KOG1188|consen  261 -----RKEDNCDYVINEH--------SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDV  326 (376)
T ss_pred             -----Hhhhhhhheeecc--------cCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhc
Confidence                 0000000001111        1112333444433 4555554433   2   2344445543 233577788888


Q ss_pred             CCCEEEEecCCceEEEeeccc
Q psy988          305 DGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      .+.++.+|++||.+.+|....
T Consensus       327 ~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  327 KNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             ccceeeccCCCceEEEEecCC
Confidence            899999999999999999644

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.88  E-value=1.2e-18  Score=146.18  Aligned_cols=332  Identities=14%  Similarity=0.137  Sum_probs=201.5

Q ss_pred             CceEEEEeccCCeeEeEEEeCCce-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFV-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      +|+|.|.|..+.+.+..+.....+ ..+.|+| |++++++++.||.|.++|+.+++..  ..+.... ....+++++||+
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~~G~-~~~~i~~s~DG~   90 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVV--ATIKVGG-NPRGIAVSPDGK   90 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEE--EEEE-SS-EEEEEEE--TTT
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEE--EEEecCC-CcceEEEcCCCC
Confidence            588999999999999999854554 4478999 9999999999999999999999866  4555433 467899999999


Q ss_pred             EEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccceeecCc
Q psy988           81 FAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      ++++++ ..+.+.++|.++.+....+......... ....+..+..+|....+++.-. .+.|.+.|....+.+..-.. 
T Consensus        91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i-  168 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI-  168 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE-
T ss_pred             EEEEEecCCCceeEeccccccceeecccccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee-
Confidence            998776 5799999999999888776655433322 3457888888888886766654 58888888776543322111 


Q ss_pred             cccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      ..........|+|++++++++ ..+..|-++|.++..........        -..|..+...+ .+|..          
T Consensus       169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g--------~~p~~~~~~~~-php~~----------  229 (369)
T PF02239_consen  169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--------KKPHPGPGANF-PHPGF----------  229 (369)
T ss_dssp             E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--------SSBEETTEEEE-EETTT----------
T ss_pred             cccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc--------ccccccccccc-cCCCc----------
Confidence            111234568899999997765 45668999998775443221110        01111222211 11111          


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe----c
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG----S  313 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~  313 (408)
                                   +.+....  -.+...++.-....+.+||..+.+.++++.....  . .-+..+|+++++.+.    .
T Consensus       230 -------------g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~--g-lFi~thP~s~~vwvd~~~~~  291 (369)
T PF02239_consen  230 -------------GPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG--G-LFIKTHPDSRYVWVDTFLNP  291 (369)
T ss_dssp             -------------EEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS--S---EE--TT-SEEEEE-TT-S
T ss_pred             -------------ceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCC--c-ceeecCCCCccEEeeccCCC
Confidence                         0010000  0112222222233566899999999999887544  3 567889999999987    4


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec--CCeEEE
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF--NGVIRV  390 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~v~i  390 (408)
                      ..+.|.++|..+.            +....+... ...+..+.|++                ||+.+..+.+  +|.|.+
T Consensus       292 ~~~~v~viD~~tl------------~~~~~i~~~~~~~~~h~ef~~----------------dG~~v~vS~~~~~~~i~v  343 (369)
T PF02239_consen  292 DADTVQVIDKKTL------------KVVKTITPGPGKRVVHMEFNP----------------DGKEVWVSVWDGNGAIVV  343 (369)
T ss_dssp             SHT-EEEEECCGT------------EEEE-HHHHHT--EEEEEE-T----------------TSSEEEEEEE--TTEEEE
T ss_pred             CCceEEEEECcCc------------ceeEEEeccCCCcEeccEECC----------------CCCEEEEEEecCCCEEEE
Confidence            5589999999875            333333322 23488999999                7776554443  347999


Q ss_pred             EeCCCCCCcccccc
Q psy988          391 FLNKTKPKHSSLPV  404 (408)
Q Consensus       391 w~~~~~~~~~~~~~  404 (408)
                      ||..+.+....+|+
T Consensus       344 ~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  344 YDAKTLKEKKRIPV  357 (369)
T ss_dssp             EETTTTEEEEEEE-
T ss_pred             EECCCcEEEEEEEe
Confidence            99999998888774

...

>KOG0303|consensus

Probab=99.87  E-value=1.7e-20  Score=147.62  Aligned_cols=163  Identities=17%  Similarity=0.257  Sum_probs=136.8

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeEEEEEecC-CCEEEEEecCCEEEE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLITAANFCEN-GKFAVVGSYDGRCIF   93 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i   93 (408)
                      +|+++|..++|+|.+.+.||+||.|.+|.||.+..+..     .+...+.+|...|-.++|+|. .+.|++++.|.+|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            49999999999999999999999999999999976442     224678999999999999996 567899999999999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      |++.+++....+.         |...|.++.|+.+|.+|++++.|..|+|||.++++.+..-..|.+... ..+.|-.+|
T Consensus       159 Wnv~tgeali~l~---------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g  228 (472)
T KOG0303|consen  159 WNVGTGEALITLD---------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASG  228 (472)
T ss_pred             EeccCCceeeecC---------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccC
Confidence            9999988654432         667999999999999999999999999999999999888777776443 346688888


Q ss_pred             CEEEEee---cCceEEEeeecc
Q psy988          174 KYIVSGS---ENQCIYIWKTHH  192 (408)
Q Consensus       174 ~~l~~~~---~dg~i~i~d~~~  192 (408)
                      ..+-+|-   .+..+-+||..+
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             ceeeeccccccccceeccCccc
Confidence            8554443   467899999754

>KOG1523|consensus

Probab=99.87  E-value=1.3e-19  Score=138.90  Aligned_cols=227  Identities=13%  Similarity=0.152  Sum_probs=168.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEec-cC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT-DQ   98 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~   98 (408)
                      -.++|+|.+|++ |...+|.+-....|.||.....+ .....++..|...|+.+.|+|..+.|++|+.|..-++|.. ..
T Consensus         9 ~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            568999999999 99999999999999999998877 6667899999999999999999999999999999999998 55


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc--eeecCccccccceEEEEecCCCEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      ++....+.+..      +....+++.|+|.++.|++|+....|.+|-.+..+--  .+.........+.++.|+|++-.|
T Consensus        88 ~~WkptlvLlR------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   88 GTWKPTLVLLR------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             CeeccceeEEE------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            55444443332      3458999999999999999999999999988754321  111222234568899999999999


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ++|+.|+..++|..--                +.+.....      -.|-|..+       ........+....+.+..+
T Consensus       162 aaGs~D~k~rVfSayI----------------K~Vdekpa------p~pWgsk~-------PFG~lm~E~~~~ggwvh~v  212 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYI----------------KGVDEKPA------PTPWGSKM-------PFGQLMSEASSSGGWVHGV  212 (361)
T ss_pred             cccccCcceeEEEEee----------------eccccCCC------CCCCccCC-------cHHHHHHhhccCCCceeee
Confidence            9999999999997521                00100000      00111100       0001111122456778888


Q ss_pred             ccCCCCCeEEEecCCCeEEEEEcCCCe
Q psy988          257 EPMPGEDKILVTSNDSRIRLYDLRDLN  283 (408)
Q Consensus       257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~  283 (408)
                      .|+|+|..|+-.+.|..+.+-|.....
T Consensus       213 ~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  213 LFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EeCCCCCEeeEecCCCceEEeecCCCc
Confidence            899999999999999999999977654

>KOG0642|consensus

Probab=99.87  E-value=4.1e-21  Score=157.81  Aligned_cols=263  Identities=14%  Similarity=0.140  Sum_probs=184.4

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      .++..|...|+.++|.|-...|++++.||.+.+|+++.........+.......+|.++|.|+++.+++..+++|+-||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            36677889999999999999999999999999999954333333333444445678899999999999999999999999


Q ss_pred             EEEEEccCc----------ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988          141 IRLYDLRDL----------NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       141 i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      |+.|++...          .....+.+|...  +..+++++....|++++.||+++.|+......             ..
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-------------~~  432 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-------------CT  432 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccc--eeeeeecccccceeeecCCceEEeeccCCcCc-------------cc
Confidence            999965421          123345666655  55788999888999999999999999864322             00


Q ss_pred             cccc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE
Q psy988          211 IKAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  288 (408)
Q Consensus       211 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  288 (408)
                      +...  ...-.++.+-....                                  ...++...-+.-.++++.....+..+
T Consensus       433 f~~~~e~g~Plsvd~~ss~~----------------------------------a~~~~s~~~~~~~~~~~ev~s~~~~~  478 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSRP----------------------------------AHSLASFRFGYTSIDDMEVVSDLLIF  478 (577)
T ss_pred             cCCccccCCcceEeeccchh----------------------------------Hhhhhhcccccccchhhhhhhheeec
Confidence            1100  01111111111000                                  00111112222223333333333333


Q ss_pred             eecc-----ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhh
Q psy988          289 KGYV-----NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  363 (408)
Q Consensus       289 ~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  363 (408)
                      ....     ....+..+.+.|.+.+.+++.+|+.|+++|..++            +.+.....|...++++++.|     
T Consensus       479 ~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~------------~~l~s~~a~~~svtslai~~-----  541 (577)
T KOG0642|consen  479 ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG------------KILHSMVAHKDSVTSLAIDP-----  541 (577)
T ss_pred             cccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc------------ccchheeeccceecceeecC-----
Confidence            2211     1134567889999999999999999999999988            67888889999999999999     


Q ss_pred             hhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcc
Q psy988          364 IAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHS  400 (408)
Q Consensus       364 ~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  400 (408)
                                 +|-+|++++.||.+++|.+.......
T Consensus       542 -----------ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  542 -----------NGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             -----------CCceEEeecCCceeehhhccchheee
Confidence                       99999999999999999997766543

>KOG2110|consensus

Probab=99.86  E-value=1.5e-18  Score=135.60  Aligned_cols=269  Identities=14%  Similarity=0.192  Sum_probs=181.9

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee-ecCCceeeEEEEEecCCCEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE-VEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l   82 (408)
                      .+++.+.+.+..+..+.....|.++.++.   ++|+++-.+ .|+|||+++.+.+.... ...+...+.++++++.+.++
T Consensus        69 ~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl  144 (391)
T KOG2110|consen   69 KLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL  144 (391)
T ss_pred             eEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence            57888888888888888889999999964   567777654 59999999988763222 22466678888888888888


Q ss_pred             EEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe-EEEEEccCcccceeecCcc
Q psy988           83 VVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR-IRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        83 ~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~  159 (408)
                      +.-+  ..|.|.+||..+.+....+.        .|.+.+.+++|+++|.+|+++++.|+ ||++.+.+++.+..|+...
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~v~~I~--------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~  216 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQPVNTIN--------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT  216 (391)
T ss_pred             EecCCCCCceEEEEEcccceeeeEEE--------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence            8643  35899999999876655544        67789999999999999999999886 7999999999999998777


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ....+.+++|+|++++|.+.+..++|++|.+........    ...........+-. ...+++.|.+  +.......+.
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~----~~p~~~~~~~~~~s-k~~~sylps~--V~~~~~~~R~  289 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPP----ESPTAGTSWFGKVS-KAATSYLPSQ--VSSVLDQSRK  289 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCC----CCCCCCCcccchhh-hhhhhhcchh--hhhhhhhccc
Confidence            788899999999999999999999999999875431110    00000000000000 0000011110  0000111111


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC--CeeeeEEeec
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--LNLSCKYKGY  291 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~  291 (408)
                      .....+.......+..+.-.+....+.+++.||.++.|.+.-  +.....++.|
T Consensus       290 FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  290 FATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             eeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence            112222222223455555556888999999999999998764  3333444433

>KOG0322|consensus

Probab=99.86  E-value=5.2e-20  Score=137.21  Aligned_cols=265  Identities=16%  Similarity=0.230  Sum_probs=175.3

Q ss_pred             ceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec---
Q psy988            3 KTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE---   77 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~---   77 (408)
                      |.|++|++++.+....+.  |...|+.+.--| + ..|.+-+.|+.+.+|++..+.....     |.-.++++.|.+   
T Consensus        35 G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~i-----~Si~~nslgFCrfSl  107 (323)
T KOG0322|consen   35 GIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFISI-----HSIVVNSLGFCRFSL  107 (323)
T ss_pred             ceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEEE-----eeeecccccccccee
Confidence            789999999999888887  889999999999 5 5689999999999999988655432     333455555543   


Q ss_pred             --CCC----EEEEEecCCE-EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCC--eEEEeeCCCeEEEEEcc
Q psy988           78 --NGK----FAVVGSYDGR-CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GED--KILVTSNDSRIRLYDLR  147 (408)
Q Consensus        78 --~~~----~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~i~d~~  147 (408)
                        +++    .++.-+.... +.+-|....   .+..... ....+..+.+.+..+.. .+.  .+++|.++|.+.+||+.
T Consensus       108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~---tqv~i~d-d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S  183 (323)
T KOG0322|consen  108 VKKPKNSEQLLEYPSRGSDETHKQDGGDT---TQVQIAD-DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS  183 (323)
T ss_pred             ccCCCcchhheecCCcccchhhhhccCcc---ceeEccC-chhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence              211    1111111100 111111111   1111111 11122234666666433 233  45667889999999999


Q ss_pred             Ccccceeec--------CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          148 DLNLSCKYK--------GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       148 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      ++..+..++        ...+...++++.|.+.-..=++|+.+..+..|+++.......                     
T Consensus       184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq---------------------  242 (323)
T KOG0322|consen  184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ---------------------  242 (323)
T ss_pred             CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc---------------------
Confidence            874332222        122334477888877655667777777888888754211100                     


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                                            ...........+..+.+-||++.+|+++.|+.||||..+++.++..+..|..  .|.+
T Consensus       243 ----------------------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~  298 (323)
T KOG0322|consen  243 ----------------------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNA  298 (323)
T ss_pred             ----------------------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeE
Confidence                                  0001112334566677788889999999999999999999999999998875  8899


Q ss_pred             EEEcCCCCEEEEecCCceEEEeec
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      ++|+|+...+|+++.|+.|.+|++
T Consensus       299 vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999986

>KOG0644|consensus

Probab=99.86  E-value=2.6e-21  Score=166.10  Aligned_cols=282  Identities=14%  Similarity=0.171  Sum_probs=207.5

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      ++|...|+|+.|.. .|.++++|+.|..++||..++..+.  ..+.+|.+.|+.++.+.+..++++++.|..|++|.+.+
T Consensus       187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~l--As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCL--ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhh--ccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            45999999999999 9999999999999999999888877  79999999999999999999999999999999999988


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee--ecCccccccceEEEEecCCCEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK--YKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      +..+..        ..+|.+.|++++|+|-.    +.+.||++++||.+-.-.+..  .........+.++.|...+..+
T Consensus       264 ~~pvsv--------LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  264 GAPVSV--------LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             CchHHH--------HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            765433        24677899999999954    678899999999982111111  0111122335567777788889


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ++++.|+.-..|.+..                  +..+...+.-+..+.+-                             
T Consensus       332 ~Tgs~d~ea~n~e~~~------------------l~~~~~~lif~t~ssd~-----------------------------  364 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQ------------------LAWRSNLLIFVTRSSDL-----------------------------  364 (1113)
T ss_pred             ccccCCcccccchhhH------------------hhhhccceEEEeccccc-----------------------------
Confidence            9999999888887632                  11111111111111110                             


Q ss_pred             ccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC-CEEEEecCCceEEEeeccccCcccccccc
Q psy988          257 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRR  335 (408)
Q Consensus       257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  335 (408)
                           ..+.+++-.+-.+.+|++.+|.+...+.+|.+  .+..+.++|-. +...+++.||...|||+-.+.+.      
T Consensus       365 -----~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi------  431 (1113)
T KOG0644|consen  365 -----SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI------  431 (1113)
T ss_pred             -----cccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc------
Confidence                 12345566778899999999999999988877  55667899954 45568899999999999887321      


Q ss_pred             CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          336 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       336 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                           .....+ .+.+....||+                ||..++....-|.+.|.....++
T Consensus       432 -----k~y~~g-h~kl~d~kFSq----------------dgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  432 -----KHYFIG-HGKLVDGKFSQ----------------DGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             -----eeeecc-cceeeccccCC----------------CCceEecCCCCCceEEeccCCCc
Confidence                 111234 45566788999                78777777777888887665544

>KOG4497|consensus

Probab=99.85  E-value=7.9e-20  Score=140.66  Aligned_cols=313  Identities=14%  Similarity=0.105  Sum_probs=206.9

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCCEEEEEeccCCeeeEEE
Q psy988           27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      -++||| +|+++|+++.- .+.|-|.++-+...   +..--..|.-+.|..|..+++. ...++.|.+|++...+....+
T Consensus        13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~q---lf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQ---LFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             ceeECC-CCCeeeeeeee-EEEEeccchhhHHH---HHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            468999 99999999864 78888887766542   2222455778889888776655 566789999999987765554


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCce
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                      ..        ...++..+.|+|+|+.++.. ..+-.|.+|.+.+.+.....-. .  ..+..++|+|||++.+..+....
T Consensus        88 de--------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-K--~~~kg~~f~~dg~f~ai~sRrDC  156 (447)
T KOG4497|consen   88 DE--------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-K--TNVKGYAFHPDGQFCAILSRRDC  156 (447)
T ss_pred             cc--------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-c--cCceeEEECCCCceeeeeecccH
Confidence            42        23589999999999776665 4588999999988665432211 1  22467899999999888765321


Q ss_pred             EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe
Q psy988          185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK  264 (408)
Q Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (408)
                      ...+++..         ...-..++.+.......+.+.|+|||..+++--..-.-   ......-+-.+..++|+|.+++
T Consensus       157 kdyv~i~~---------c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley---kv~aYe~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  157 KDYVQISS---------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY---KVYAYERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             HHHHHHHh---------hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh---eeeeeeeccceeEEEeccccce
Confidence            11111110         01112234455556677889999999998753211110   0012233457888999999999


Q ss_pred             EEEecCCCeEEEEEcCCCeeeeE---------------------------------------------------------
Q psy988          265 ILVTSNDSRIRLYDLRDLNLSCK---------------------------------------------------------  287 (408)
Q Consensus       265 l~~~~~d~~i~i~d~~~~~~~~~---------------------------------------------------------  287 (408)
                      |++|+.|+.+|+.+--+.++...                                                         
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            99999999999865332111000                                                         


Q ss_pred             ---Eee----ccceeceeEEEEcCCCCEEEEecC--CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          288 ---YKG----YVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       288 ---~~~----~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                         ++.    ......+--++|++|..++++-..  -+.+.+||++..             .+...-....+|....|+|
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-------------~l~avLiQk~piraf~WdP  371 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-------------KLHAVLIQKHPIRAFEWDP  371 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-------------hhhhhhhhccceeEEEeCC
Confidence               000    001123445799999999998654  468999999874             2222333567899999999


Q ss_pred             CchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          359 CPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       359 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                                      ....|+.+.....+++|.....
T Consensus       372 ----------------~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  372 ----------------GRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             ----------------CCceEEEEcCCceEEEEcCCCc
Confidence                            5556666666677999987653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=2e-19  Score=156.19  Aligned_cols=235  Identities=15%  Similarity=0.119  Sum_probs=157.0

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      +..|.+||.+.........|...+.+.+||| +|+.|+.++.+   ..|++||+.+++......+.+|   ...++|+||
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            3689999998776555556888999999999 99999887754   3699999988875543444444   346899999


Q ss_pred             CCEEEEEe-cCCEEEEE--eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCccccee
Q psy988           79 GKFAVVGS-YDGRCIFY--TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        79 ~~~l~~~~-~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  154 (408)
                      |+.|+.++ .+|.+.||  |+.+.... .+        ..+...+....|+|+++.|+.++ .+|...+|++........
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l--------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~  329 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPS-QL--------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS  329 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeE-ee--------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            99888765 67866665  55444321 11        11234577899999999887665 578888887754322122


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      ...+..    ....|+|+|++|+..+.++ +.+||+.++.....             ..                     
T Consensus       330 ~l~~~~----~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-------------t~---------------------  370 (429)
T PRK01742        330 LVGGRG----YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-------------SS---------------------  370 (429)
T ss_pred             EecCCC----CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-------------cC---------------------
Confidence            222221    2467999999998887765 55688865421100             00                     


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEc--CCCeeeeEEeeccceeceeEEEEcCC
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL--RDLNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                                   .  .....+.|+|+|++|+.++.++.+.+|++  .+++....+..+..  .+..++|+|-
T Consensus       371 -------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        371 -------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             -------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence                         0  00123557788888888888888888775  35777777765543  5667889884

>KOG4497|consensus

Probab=99.85  E-value=5.8e-19  Score=135.96  Aligned_cols=328  Identities=13%  Similarity=0.188  Sum_probs=203.1

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCC-CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDD-RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      |+.|.+|++...+-...+. -..++.+++||| +| .+|.+...+-.|.+|.+.+.+..   .++.....+..++|+|+|
T Consensus        70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVKGYAFHPDG  145 (447)
T ss_pred             cceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccceeE---EecccccCceeEEECCCC
Confidence            6789999999999888887 788999999999 77 56667777999999999988765   334344567899999999


Q ss_pred             CEEEEEecCCEEEEEec---cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee
Q psy988           80 KFAVVGSYDGRCIFYTT---DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~  154 (408)
                      ++.+.++.-......++   ..-.....+.        -..-..+++.|+|||+.|++-..  +-.|..|.         
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~--------~dT~DltgieWsPdg~~laVwd~~Leykv~aYe---------  208 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFK--------LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE---------  208 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcC--------CCcccccCceECCCCcEEEEecchhhheeeeee---------
Confidence            99888875421111111   1111111111        11235788999999987765432  22222221         


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceee-----eeecccCCCccc--cccccccceEEEEEEeCCc
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK-----FSSVRRDRNDFW--EGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~  227 (408)
                           ....+..+.|+|.+++|++|+.|+.+|+.+--+=+..     ......+....+  +....-.-...++.|.|..
T Consensus       209 -----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~  283 (447)
T KOG4497|consen  209 -----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD  283 (447)
T ss_pred             -----eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence                 1123667899999999999999999998664321110     000000000000  0011111223345555432


Q ss_pred             ceeeeec------CCCC------CCCceeeecCCCceeeeeccCCCCCeEEEecC--CCeEEEEEcCCCeeeeEEeeccc
Q psy988          228 ELIIAQM------EPDK------SESTGYVLNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVN  293 (408)
Q Consensus       228 ~~~~~~~------~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~  293 (408)
                      -..-...      ....      ..+...-.......+.-++|++|..++++-..  -+.+.+||++..++...+..   
T Consensus       284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---  360 (447)
T KOG4497|consen  284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---  360 (447)
T ss_pred             cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---
Confidence            1110000      0000      00001111223345777999999999998643  37799999998776555543   


Q ss_pred             eeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCC
Q psy988          294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  373 (408)
Q Consensus       294 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s  373 (408)
                      ..+|....|+|....|+.+.....+++|.....            ..+ ......-.|..+.|..               
T Consensus       361 k~piraf~WdP~~prL~vctg~srLY~W~psg~------------~~V-~vP~~GF~i~~l~W~~---------------  412 (447)
T KOG4497|consen  361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP------------RVV-GVPKKGFNIQKLQWLQ---------------  412 (447)
T ss_pred             ccceeEEEeCCCCceEEEEcCCceEEEEcCCCc------------eEE-ecCCCCceeeeEEecC---------------
Confidence            237889999999998988888888999987653            111 1222335799999999               


Q ss_pred             CcccEEEEEecCCe
Q psy988          374 STGYVLVSADFNGV  387 (408)
Q Consensus       374 ~~~~~l~s~~~dg~  387 (408)
                       +|..++-.+.|.-
T Consensus       413 -~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  413 -PGEFIVLCGKDAF  425 (447)
T ss_pred             -CCcEEEEEcCCce
Confidence             8888888888753

>KOG4227|consensus

Probab=99.84  E-value=9.9e-20  Score=143.47  Aligned_cols=271  Identities=13%  Similarity=0.074  Sum_probs=187.2

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|+++..-..... .+.......|...|.|++|...+..+++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-CCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            467789999999999999999999999999999998753221110 0111122356679999999999999999999999


Q ss_pred             EEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      |...|+++.+.+..+....+...|..+..+|..+.|++.+.++.|.+||.+........         ............
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---------~~~AN~~~~F~t  199 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---------VLPANSGKNFYT  199 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce---------eeecCCCcccee
Confidence            99999999998888877776777899999999999999999999999999753211110         111122333445


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee-eeEEe---ec-ccee
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKYK---GY-VNVS  295 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~---~~-~~~~  295 (408)
                      +.|+|....                                  +|++.+..+-+-+||.+.... +....   +. ....
T Consensus       200 ~~F~P~~P~----------------------------------Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~  245 (609)
T KOG4227|consen  200 AEFHPETPA----------------------------------LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT  245 (609)
T ss_pred             eeecCCCce----------------------------------eEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence            555554443                                  367778888899999886432 11111   11 1111


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCc
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  375 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~  375 (408)
                      .-..+.|+|+|..+++--....-.+||+.+.....-.....+.     -......+.+++|..                 
T Consensus       246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~-----GY~N~~T~KS~~F~~-----------------  303 (609)
T KOG4227|consen  246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN-----GYCNIKTIKSMTFID-----------------  303 (609)
T ss_pred             hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC-----cceeeeeeeeeeeec-----------------
Confidence            2346789999999988776667778888764221110000000     000123467888874                 


Q ss_pred             ccEEEEEecCCeEEEEeCCCCC
Q psy988          376 GYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       376 ~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ...+++|+.+=.|++|.++...
T Consensus       304 D~~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  304 DYTVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             ceeeeccCcccceEEEecCCCc
Confidence            4569999999999999997654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=5.4e-19  Score=153.55  Aligned_cols=236  Identities=11%  Similarity=0.112  Sum_probs=159.0

Q ss_pred             CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCe
Q psy988           44 DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI  120 (408)
Q Consensus        44 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v  120 (408)
                      +..|.+||.+....   +.+..|...+...+|+|||+.|+..+.+   ..|.+||+.+++....   ....      +..
T Consensus       183 ~~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l---~~~~------g~~  250 (429)
T PRK01742        183 PYEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV---ASFR------GHN  250 (429)
T ss_pred             eEEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE---ecCC------Ccc
Confidence            46899999877653   3566778889999999999999987754   3799999987653221   1111      123


Q ss_pred             EEEeeCCCCCeEEEee-CCCeEEEE--EccCcccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceee
Q psy988          121 SGIEPMPGEDKILVTS-NDSRIRLY--DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAK  196 (408)
Q Consensus       121 ~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  196 (408)
                      ...+|+||++.|+++. .+|.+.||  |+.+++. ..+..+.  ..+....|+|||+.|+..+ .+|...+|++......
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~--~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGA--GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCC--CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4689999999988874 57765555  6655543 3343332  2355789999999877655 5778888877431100


Q ss_pred             eeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEE
Q psy988          197 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRL  276 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  276 (408)
                      .           ..+                                    .+..  ....|+|||++|+..+.++ +.+
T Consensus       328 ~-----------~~l------------------------------------~~~~--~~~~~SpDG~~ia~~~~~~-i~~  357 (429)
T PRK01742        328 A-----------SLV------------------------------------GGRG--YSAQISADGKTLVMINGDN-VVK  357 (429)
T ss_pred             e-----------EEe------------------------------------cCCC--CCccCCCCCCEEEEEcCCC-EEE
Confidence            0           000                                    0001  2356788888888777665 666


Q ss_pred             EEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEe
Q psy988          277 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  356 (408)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  356 (408)
                      ||+.+++........    ....+.|+|||++|+.++.++.+.+|.+....          ......+..|.+.+..++|
T Consensus       358 ~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~----------G~~~~~l~~~~g~~~~p~w  423 (429)
T PRK01742        358 QDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD----------GRFKARLPGSDGQVKFPAW  423 (429)
T ss_pred             EECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECC----------CCceEEccCCCCCCCCccc
Confidence            999888754332222    12357899999999999999988888764210          1456667788888999999


Q ss_pred             cC
Q psy988          357 AP  358 (408)
Q Consensus       357 ~~  358 (408)
                      +|
T Consensus       424 sp  425 (429)
T PRK01742        424 SP  425 (429)
T ss_pred             CC
Confidence            98

>KOG2111|consensus

Probab=99.84  E-value=5.9e-17  Score=124.39  Aligned_cols=243  Identities=15%  Similarity=0.201  Sum_probs=161.9

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecC------CEEEEEec
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYD------GRCIFYTT   96 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~iw~~   96 (408)
                      ...+++|+. |...++.|..+| .+||+.+.-+...........-.+..+-|  ..++|+ +|+.+      +.+.|||-
T Consensus         7 ~~lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEcc-CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence            345599998 888788876655 89999876332211111111122223333  233443 33332      58999996


Q ss_pred             cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc-CcccceeecCccccccceEEEEecCCCE
Q psy988           97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      ........+...         .+|.++.+.+  ..+++.-. +.|++|... +.+.+..+....++....+++-..+..+
T Consensus        83 ~k~~~i~el~f~---------~~I~~V~l~r--~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   83 LKERCIIELSFN---------SEIKAVKLRR--DRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ccCcEEEEEEec---------cceeeEEEcC--CeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            665555555443         3899999875  45666554 689999987 5556666655554444444433334445


Q ss_pred             EEE-eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988          176 IVS-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS  254 (408)
Q Consensus       176 l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (408)
                      |+. |-.-|.|++-|+......                                             ....+.+|...|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~---------------------------------------------~p~~I~AH~s~Ia  185 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPN---------------------------------------------APSIINAHDSDIA  185 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcC---------------------------------------------CceEEEcccCcee
Confidence            554 345688999888542110                                             1122335666666


Q ss_pred             eeccCCCCCeEEEecCCCe-EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          255 GIEPMPGEDKILVTSNDSR-IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +++...+|..+|+++..|+ |||||..+|+.++.+........+.+++|||++.+||++|..|+++||.+....
T Consensus       186 cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  186 CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            6666677788899999887 799999999999999877777789999999999999999999999999998743

>KOG1524|consensus

Probab=99.84  E-value=3.4e-19  Score=146.00  Aligned_cols=264  Identities=13%  Similarity=0.130  Sum_probs=181.2

Q ss_pred             CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEee-ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988           65 GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS-TRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  143 (408)
                      .|...+.++.|+.+...+.+++.+-.+.-|++.+... ....... ......|..+- +..=-.....|+.++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~r-s~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGR-SSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCcccccccc-ccCCCCCcceEEEEcCCceEEE
Confidence            5667778999988877666665554444555543322 1111111 10000010000 0000113457889999999998


Q ss_pred             EEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          144 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       144 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      .+- .++.......|...  +.+-.|+|||.-|+++++||.|++|.-..             -...++.....+|.|++|
T Consensus        90 l~k-~~rVE~sv~AH~~A--~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-------------MLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   90 LNK-SARVERSISAHAAA--ISSGRWSPDGAGLLTAGEDGVIKIWSRSG-------------MLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ecc-cchhhhhhhhhhhh--hhhcccCCCCceeeeecCCceEEEEeccc-------------hHHHHHhhcCceeEEEEE
Confidence            874 45556666666554  66788999999999999999999998532             223345566789999999


Q ss_pred             eCCcceeeeec------CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceece
Q psy988          224 APCPELIIAQM------EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ  297 (408)
Q Consensus       224 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v  297 (408)
                      .|+...++...      .+-........+..|++-|.++.|++..+.+++|++|-+.++||.. |..+..-..|.+  +|
T Consensus       154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~I  230 (737)
T KOG1524|consen  154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AI  230 (737)
T ss_pred             CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ce
Confidence            99998887653      2334556667788999999999999999999999999999999976 555555555555  89


Q ss_pred             eEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc
Q psy988          298 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  377 (408)
Q Consensus       298 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~  377 (408)
                      ++++|.|+ +.++.++.+ +.+   +.                    ....+.|..++||+                ||.
T Consensus       231 TSva~npd-~~~~v~S~n-t~R---~~--------------------~p~~GSifnlsWS~----------------DGT  269 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYN-TAR---FS--------------------SPRVGSIFNLSWSA----------------DGT  269 (737)
T ss_pred             eeeeeccc-cceeeeeee-eee---ec--------------------CCCccceEEEEEcC----------------CCc
Confidence            99999999 666666543 333   11                    12467799999999                777


Q ss_pred             EEEEEecCCeEEE
Q psy988          378 VLVSADFNGVIRV  390 (408)
Q Consensus       378 ~l~s~~~dg~v~i  390 (408)
                      .++.|...|.+.+
T Consensus       270 Q~a~gt~~G~v~~  282 (737)
T KOG1524|consen  270 QATCGTSTGQLIV  282 (737)
T ss_pred             eeeccccCceEEE
Confidence            7777777776654

>KOG1517|consensus

Probab=99.84  E-value=9.8e-19  Score=154.34  Aligned_cols=272  Identities=18%  Similarity=0.243  Sum_probs=189.9

Q ss_pred             eEEEEeccCCeeEeEEE----eCCceEEEEEcC-CCCCEEEEEeCCCcEEEEecCCC---Cceeee---eecCC----ce
Q psy988            4 TVRLWHISRKECLCCFQ----HIDFVTAICFHP-RDDRYFLSGSLDGKLRLWNIPDK---KVAVWN---EVEGQ----TK   68 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~----h~~~v~~~~~sp-~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~---~~~~~----~~   68 (408)
                      .|+|||.+.++.+..+.    -...|+.+++-. +|..++++|+.||.|+||+-...   +.....   .+.++    .+
T Consensus      1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~ 1166 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG 1166 (1387)
T ss_pred             eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC
Confidence            68999999999988886    446789998754 36678999999999999975322   111111   12221    11


Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEcc
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~  147 (408)
                      .=.-+.|.....+|++++.-..|+|||.........+...       ....++++.-+. .|+.+++|..||.|++||.+
T Consensus      1167 ~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred             CCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC-------CCccceeecccccCCceEEEeecCCceEEeecc
Confidence            2244667777667777777889999999987765554433       234566665443 46899999999999999998


Q ss_pred             Ccc---cceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          148 DLN---LSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       148 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ...   .+...+.|.....|..+.+.+.|-. |++|+.+|.|++||++..... .        . -....|         
T Consensus      1240 ~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~--------~-~~iv~~--------- 1300 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-T--------F-LTIVAH--------- 1300 (1387)
T ss_pred             cCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-c--------c-ceeeec---------
Confidence            643   4556677776666888888887654 999999999999999753100 0        0 000000         


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-----cceecee
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-----VNVSSQI  298 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~v~  298 (408)
                                             ...++..+++..+++...+|+|+. +.|+||++. |+.+..+..+     .....+.
T Consensus      1301 -----------------------~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1301 -----------------------WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred             -----------------------cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcc
Confidence                                   011234677777888888999888 999999987 4443333321     1234568


Q ss_pred             EEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          299 KASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       299 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +++|+|..-++|+|+.|..|.||.....
T Consensus      1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeeecchhHhhhhccCCceEEEeecCCc
Confidence            9999999999999999999999987653

>KOG0290|consensus

Probab=99.84  E-value=1.2e-18  Score=131.91  Aligned_cols=256  Identities=19%  Similarity=0.268  Sum_probs=176.4

Q ss_pred             cCCeeEeE--EEeCCceEEEEEcCCCC-----CEEEEEeCCCcEEEEecCC--CCceeeee-----ecCCceeeEEEEEe
Q psy988           11 SRKECLCC--FQHIDFVTAICFHPRDD-----RYFLSGSLDGKLRLWNIPD--KKVAVWNE-----VEGQTKLITAANFC   76 (408)
Q Consensus        11 ~~~~~~~~--~~h~~~v~~~~~sp~~~-----~~l~t~~~dg~i~iw~~~~--~~~~~~~~-----~~~~~~~v~~~~~~   76 (408)
                      ++++.+..  +.|.-+++.+.|.| +.     ++|||++  ..+++|.+..  .+......     -..+..++++..|+
T Consensus        83 ~s~e~~~~a~fd~~YP~tK~~wiP-d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn  159 (364)
T KOG0290|consen   83 DSGELVEDANFDHPYPVTKLMWIP-DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN  159 (364)
T ss_pred             CCCceeccCCCCCCCCccceEecC-CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccc
Confidence            44554443  45999999999999 44     5677765  4899999974  33222122     23456789999998


Q ss_pred             c-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCccccee
Q psy988           77 E-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        77 ~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~  154 (408)
                      . +-+++.+++-|-+..|||++++.... .    ....-+|...|..++|...+. .|++.+.||.+|+||++..+-...
T Consensus       160 e~dp~~igtSSiDTTCTiWdie~~~~~~-v----kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI  234 (364)
T KOG0290|consen  160 EVDPNLIGTSSIDTTCTIWDIETGVSGT-V----KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI  234 (364)
T ss_pred             cCCcceeEeecccCeEEEEEEeeccccc-e----eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE
Confidence            6 67889999999999999999863200 0    011135778999999998654 567789999999999998664433


Q ss_pred             -ecCccccccceEEEEecC-CCEEEEeecC-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          155 -YKGYVNVSSQIKASFSHD-GKYIVSGSEN-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       155 -~~~~~~~~~~~~~~~~~~-~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                       ++..........++|+++ -+++++-..| ..|.+.|++..           ..++..+.+|...|+.++|.|...   
T Consensus       235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----------~tpva~L~~H~a~VNgIaWaPhS~---  300 (364)
T KOG0290|consen  235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----------CTPVARLRNHQASVNGIAWAPHSS---  300 (364)
T ss_pred             EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----------CcceehhhcCcccccceEecCCCC---
Confidence             333333455677888874 4667765444 47999999753           455677888888888888888654   


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeee---eEEeeccceeceeEEEEcC-CCC
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS---CKYKGYVNVSSQIKASFSH-DGK  307 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~s~-~~~  307 (408)
                                                     ..|++++.|..+.+||+...-..   .-+........|..+.|++ .+.
T Consensus       301 -------------------------------~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  301 -------------------------------SHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD  349 (364)
T ss_pred             -------------------------------ceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence                                           45889999999999999753220   0111122344788999996 566


Q ss_pred             EEEEecCCceEEE
Q psy988          308 YIVSGSENQCIYI  320 (408)
Q Consensus       308 ~l~~~~~dg~i~i  320 (408)
                      +++.+.. +++.+
T Consensus       350 wiai~~~-kklei  361 (364)
T KOG0290|consen  350 WIAICFG-KKLEI  361 (364)
T ss_pred             EEEEEec-CeeeE
Confidence            7777653 34443

>KOG0771|consensus

Probab=99.83  E-value=6e-19  Score=140.26  Aligned_cols=204  Identities=14%  Similarity=0.119  Sum_probs=149.8

Q ss_pred             EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      ..++|+++|..+++++.||++|+|+........        ....|...|.++.|+||++.|++.+.| ..+||+.+++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            678999999999999999999999976644322        223456799999999999999999999 89999999997


Q ss_pred             cceeecCccccccceEEEEecCC---CE--EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDG---KY--IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      .+..............+.|+.++   .+  ++....-+.|+.||+..-..                              
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~------------------------------  268 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG------------------------------  268 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc------------------------------
Confidence            77766644444444456777766   22  22233345677776632100                              


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                      + ..+           ...........|++++.+++|++++.|+.||.|.|++..+.+.++..+. .|...|+.+.|+||
T Consensus       269 ~-~~l-----------~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  269 S-NFL-----------RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPD  335 (398)
T ss_pred             c-ccc-----------chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCC
Confidence            0 000           0000012234677888888899999999999999999998888766653 45558999999999


Q ss_pred             CCEEEEecCCceEEEeecccc
Q psy988          306 GKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       306 ~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .+++++-+.|....+..+...
T Consensus       336 sr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  336 SRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             cCcccccccCCceeEEEEeec
Confidence            999999999999999888653

>KOG0303|consensus

Probab=99.82  E-value=3.7e-19  Score=140.18  Aligned_cols=216  Identities=12%  Similarity=0.183  Sum_probs=156.9

Q ss_pred             eecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCC
Q psy988           62 EVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDS  139 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  139 (408)
                      .+.+|+++|..++|+| +...||+||.|.+|.||.+.......... .......+|...|.-++|+|. .+.|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            5678999999999999 56779999999999999998665433322 223334567789999999996 45778889999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      .|.+|++.+++.+..+. |  ...+.++.|+.+|.+|++.+.|..|+|||.+++.....            -..|.+.  
T Consensus       155 ~v~iWnv~tgeali~l~-h--pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e------------~~~heG~--  217 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-H--PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE------------GVAHEGA--  217 (472)
T ss_pred             eEEEEeccCCceeeecC-C--CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee------------cccccCC--
Confidence            99999999999887776 3  34588999999999999999999999999987643322            1222221  


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe---cCCCeEEEEEcCCCeeeeEEeeccceec
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT---SNDSRIRLYDLRDLNLSCKYKGYVNVSS  296 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~  296 (408)
                                                      ......|..++..+-+|   ..+..+.+||..+.+....+........
T Consensus       218 --------------------------------k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG  265 (472)
T KOG0303|consen  218 --------------------------------KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG  265 (472)
T ss_pred             --------------------------------CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc
Confidence                                            11222233344433333   4578899999887665544444333445


Q ss_pred             eeEEEEcCCCCEEEE-ecCCceEEEeeccccC
Q psy988          297 QIKASFSHDGKYIVS-GSENQCIYIWKTHHDY  327 (408)
Q Consensus       297 v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~  327 (408)
                      |.---|.||.+.+.. |-.|+.|+-|++....
T Consensus       266 vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  266 VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            555667888888764 5569999999998764

>KOG0649|consensus

Probab=99.82  E-value=5e-18  Score=125.30  Aligned_cols=243  Identities=13%  Similarity=0.127  Sum_probs=167.5

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE--EeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEE
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH--VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  145 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  145 (408)
                      ..|.+-+++|.+++|++|+.+|.|.+..+..........  ........+|.+++..++|+  ..+|++++ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            456777899999999999999999999886432111100  01112236788999999998  55666666 49999998


Q ss_pred             ccCccc------ceeecC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988          146 LRDLNL------SCKYKG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  214 (408)
Q Consensus       146 ~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      .+....      +...+.     ......+.++...|..+-++.++.|+.++-||++++.            ..+.+++|
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~------------i~r~~rGH  155 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR------------IQREYRGH  155 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE------------EEEEEcCC
Confidence            764322      111111     1122346778889888778877799999999998754            34668888


Q ss_pred             cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce
Q psy988          215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV  294 (408)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  294 (408)
                      ...+.++.-...                                   ...+++|++||++|+||.++++.+..+....+.
T Consensus       156 tDYvH~vv~R~~-----------------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~  200 (325)
T KOG0649|consen  156 TDYVHSVVGRNA-----------------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP  200 (325)
T ss_pred             cceeeeeeeccc-----------------------------------CcceeecCCCccEEEEeccccceeEEeccccCh
Confidence            888888776322                                   234688999999999999999998887755432


Q ss_pred             e--------ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhc
Q psy988          295 S--------SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  366 (408)
Q Consensus       295 ~--------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  366 (408)
                      .        .|  .+..-+..+|++|+ .-.+.+|.++..            ++...+. -..++..+.|..        
T Consensus       201 ~~lRp~~g~wi--gala~~edWlvCGg-Gp~lslwhLrss------------e~t~vfp-ipa~v~~v~F~~--------  256 (325)
T KOG0649|consen  201 NLLRPDWGKWI--GALAVNEDWLVCGG-GPKLSLWHLRSS------------ESTCVFP-IPARVHLVDFVD--------  256 (325)
T ss_pred             hhcCcccCcee--EEEeccCceEEecC-CCceeEEeccCC------------CceEEEe-cccceeEeeeec--------
Confidence            2        22  34444667888775 447999999886            3333332 455688888954        


Q ss_pred             cCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          367 MEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       367 ~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                ..++++|.-+.|.-|.+.
T Consensus       257 ----------d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  257 ----------DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ----------ceEEEeccccceeeeeec
Confidence                      467777777778888765

>KOG0771|consensus

Probab=99.82  E-value=3.8e-18  Score=135.78  Aligned_cols=204  Identities=16%  Similarity=0.133  Sum_probs=138.4

Q ss_pred             EEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeec
Q psy988          121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  200 (408)
Q Consensus       121 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  200 (408)
                      ..++|+++|..+++++.||.+|+|+..+...+.....|...  |.++.|+|||++|++-+.| ..+||+.+++.......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc--cccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            78999999999999999999999997777666555555444  8899999999999999999 89999998762221100


Q ss_pred             ccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEc
Q psy988          201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDL  279 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~  279 (408)
                                -...+.....+.|+.++..                               +. ..++.....+.|+.||+
T Consensus       225 ----------~~~k~~~~~~cRF~~d~~~-------------------------------~~l~laa~~~~~~~v~~~~~  263 (398)
T KOG0771|consen  225 ----------PFSKDEMFSSCRFSVDNAQ-------------------------------ETLRLAASQFPGGGVRLCDI  263 (398)
T ss_pred             ----------CcccchhhhhceecccCCC-------------------------------ceEEEEEecCCCCceeEEEe
Confidence                      0111222333344433210                               00 11222234455666665


Q ss_pred             CCCee---eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEe
Q psy988          280 RDLNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  356 (408)
Q Consensus       280 ~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  356 (408)
                      ...+-   ++..+.......+.+++.|+||+++|.|+.||.|.|++..+-+           .....-+.|...|+.+.|
T Consensus       264 ~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq-----------~~~~vk~aH~~~VT~ltF  332 (398)
T KOG0771|consen  264 SLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ-----------RLQYVKEAHLGFVTGLTF  332 (398)
T ss_pred             eeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee-----------eeEeehhhheeeeeeEEE
Confidence            43221   1111112223368899999999999999999999999988652           222334579999999999


Q ss_pred             cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          357 APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      +|                |.+++++.+.|...++..+.-
T Consensus       333 ~P----------------dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SP----------------DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cC----------------CcCcccccccCCceeEEEEee
Confidence            99                777888777777777776654

>KOG1524|consensus

Probab=99.81  E-value=8.7e-19  Score=143.61  Aligned_cols=209  Identities=14%  Similarity=0.208  Sum_probs=163.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccc
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKN  114 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  114 (408)
                      ...|+.++.||.+.|.+- .+++.  +....|.+.+.+-.|+|+|.-|++++.||.|++|.-...-.....         
T Consensus        75 ~d~~~i~s~DGkf~il~k-~~rVE--~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~---------  142 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK-SARVE--RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV---------  142 (737)
T ss_pred             cceEEEEcCCceEEEecc-cchhh--hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh---------
Confidence            457888899999999874 44444  678899999999999999999999999999999986543211111         


Q ss_pred             cCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988          115 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                      ....+|.|++|.|+.+.++.+.. +.+.+=.+.....+...+.|.+.  +.++.|++..+.+++|++|-..++||-.   
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGi--iL~~~W~~~s~lI~sgGED~kfKvWD~~---  216 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGL--VLSLSWSTQSNIIASGGEDFRFKIWDAQ---  216 (737)
T ss_pred             hcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcE--EEEeecCccccceeecCCceeEEeeccc---
Confidence            12248999999999988877754 57777777766666677777765  8899999999999999999999999964   


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                                +..+..-..|..+|++++|+|+..+++.++....      ......+.|..++||+||..++.|+..|.+
T Consensus       217 ----------G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  217 ----------GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR------FSSPRVGSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             ----------CcccccCChhccceeeeeeccccceeeeeeeeee------ecCCCccceEEEEEcCCCceeeccccCceE
Confidence                      3445556778999999999999555543332222      334556789999999999999999988877


Q ss_pred             EEE
Q psy988          275 RLY  277 (408)
Q Consensus       275 ~i~  277 (408)
                      .+-
T Consensus       281 ~~A  283 (737)
T KOG1524|consen  281 IVA  283 (737)
T ss_pred             EEe
Confidence            653

>KOG2139|consensus

Probab=99.81  E-value=4.1e-17  Score=127.47  Aligned_cols=315  Identities=13%  Similarity=0.157  Sum_probs=190.8

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCC-CEEEEEecCCEEEEEeccCC
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENG-KFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +-.+..++|++ .-..+|++..|-.|++|+-......   .++ .....|++++|-|.+ ..|+.|+. +-|.+|.....
T Consensus        98 ~~dlr~~aWhq-H~~~fava~nddvVriy~ksst~pt---~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t  172 (445)
T KOG2139|consen   98 EIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSSTCPT---KLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT  172 (445)
T ss_pred             hcceeeEeech-hhhhhhhhccCcEEEEeccCCCCCc---eecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence            45678899998 6667889999999999997774332   332 235679999999975 45666665 45999987642


Q ss_pred             eeeEEE------EEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988          100 KYHTQI------HVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus       100 ~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      -.....      .........+| .+|+++.|.+||..+++++- +..|.|||..++..+.....  ....+.-+.|+||
T Consensus       173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPd  249 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPD  249 (445)
T ss_pred             cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCC
Confidence            211110      00011112233 58999999999999999865 67899999999876654422  2233556899999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      +.+|+++.-|+..++|+.......            .......+.|....|+|+|+.++....             ....
T Consensus       250 gd~lfaAt~davfrlw~e~q~wt~------------erw~lgsgrvqtacWspcGsfLLf~~s-------------gsp~  304 (445)
T KOG2139|consen  250 GDVLFAATCDAVFRLWQENQSWTK------------ERWILGSGRVQTACWSPCGSFLLFACS-------------GSPR  304 (445)
T ss_pred             CCEEEEecccceeeeehhccccee------------cceeccCCceeeeeecCCCCEEEEEEc-------------CCce
Confidence            999999999999999965432111            112233448888999999998865422             2233


Q ss_pred             eeeeccCCCCCeEE-EecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEEEEecCCc--------eEEEee
Q psy988          253 ISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSGSENQ--------CIYIWK  322 (408)
Q Consensus       253 i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iw~  322 (408)
                      +.++.|......+. .++.....-+-|+..-   ....+. --.+...+++|.|.|.+||+.-..+        .|.+||
T Consensus       305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~---ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd  381 (445)
T KOG2139|consen  305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEV---TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD  381 (445)
T ss_pred             EEEEeecCCCccccCcccceeeeeeccchhh---hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence            44444443322222 2222223333343311   111110 0123566899999999999865433        366677


Q ss_pred             ccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          323 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ...... +..      .......+  ..-.-++|+|..+             ++.+|..+=.-|.+.-|.+.
T Consensus       382 tr~sp~-vel------s~cg~i~g--e~P~~IsF~pl~n-------------~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  382 TRKSPP-VEL------SYCGMIGG--EYPAYISFGPLKN-------------EGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ccccCc-eEE------EecccccC--CCCceEEeeeccc-------------CCcEEEEEeccCceEeeeeE
Confidence            654310 000      00001111  1134566666322             77788888778888877664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=2.7e-17  Score=142.52  Aligned_cols=236  Identities=14%  Similarity=0.144  Sum_probs=150.4

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.+||.+.........+...+.+.+||| ||+.|+..+.   +..|.+|++.+++......+.++   +..+.|+|||+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~  255 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGS  255 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCC
Confidence            68899998777666666888999999999 8988887543   35799999988876533333333   45689999999


Q ss_pred             EEEEE-ecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-Ce--EEEEEccCccccee
Q psy988           81 FAVVG-SYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-SR--IRLYDLRDLNLSCK  154 (408)
Q Consensus        81 ~l~~~-~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~  154 (408)
                      .|+.. +.+|  .|.+||+++++.....         .....+....|+|+++.|+..+.+ +.  |+++|+.+++.. .
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~  325 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R  325 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence            88865 3344  5888999876532211         112356788999999998877653 33  444455544322 2


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      +....  .......|+|||++|+..+.++                                                   
T Consensus       326 lt~~~--~~~~~~~~SpDG~~Ia~~~~~~---------------------------------------------------  352 (429)
T PRK03629        326 ITWEG--SQNQDADVSSDGKFMVMVSSNG---------------------------------------------------  352 (429)
T ss_pred             eecCC--CCccCEEECCCCCEEEEEEccC---------------------------------------------------
Confidence            21111  1122355666666655543221                                                   


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                                         ....|.+||+.+++.. .+... .  ......|+|||++|+.++.
T Consensus       353 -----------------------------------g~~~I~~~dl~~g~~~-~Lt~~-~--~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        353 -----------------------------------GQQHIAKQDLATGGVQ-VLTDT-F--LDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             -----------------------------------CCceEEEEECCCCCeE-EeCCC-C--CCCCceECCCCCEEEEEEc
Confidence                                               1123556666555432 22211 1  1225689999999998887


Q ss_pred             Cce---EEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          315 NQC---IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       315 dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      ++.   +.++++..             .....+.+|.+.+...+|+|
T Consensus       394 ~~~~~~l~~~~~~G-------------~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        394 QGMGSVLNLVSTDG-------------RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCceEEEEEECCC-------------CCeEECccCCCCcCCcccCC
Confidence            754   67777754             34455667888899999998

>KOG2139|consensus

Probab=99.79  E-value=1.3e-16  Score=124.63  Aligned_cols=286  Identities=14%  Similarity=0.139  Sum_probs=176.8

Q ss_pred             CceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc------------eeeeeecCCc
Q psy988            2 DKTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV------------AVWNEVEGQT   67 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~------------~~~~~~~~~~   67 (408)
                      |-+|++||-.. ++...++  -...|+|++|-|-.+..|+.|+. +-|.+|.......            .....-.+| 
T Consensus       119 ddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-  195 (445)
T KOG2139|consen  119 DDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-  195 (445)
T ss_pred             CcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-
Confidence            67899999776 5555565  56789999999977778888887 5699998753211            111123445 


Q ss_pred             eeeEEEEEecCCCEEEEEecC-CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEc
Q psy988           68 KLITAANFCENGKFAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL  146 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  146 (408)
                      .+|++++|.+||..+++++.+ ..|.|||.+++.......        ...+.+.-+.|+||+.+|++++-|+..++|..
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--------~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------cCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            689999999999999998864 689999999887544331        11257888999999999999999999999955


Q ss_pred             cCc-ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          147 RDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       147 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      ... ...+-..+   ...+...+|+|+|++|+.... |.-++|.+.-........            . ...+..+..-.
T Consensus       268 ~q~wt~erw~lg---sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~------------~-~~~~k~~llia  330 (445)
T KOG2139|consen  268 NQSWTKERWILG---SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL------------R-PQSIKRVLLIA  330 (445)
T ss_pred             cccceecceecc---CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc------------C-cccceeeeeec
Confidence            432 22222222   235778999999998776543 445566654221111000            0 00111111110


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC--------CeEEEEEcCCCeeeeEE-eeccceec
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND--------SRIRLYDLRDLNLSCKY-KGYVNVSS  296 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~-~~~~~~~~  296 (408)
                      |-..+...          .--..-.+++.+++|.|.|.++++.-..        ..|.+||.+..-.+... -+......
T Consensus       331 DL~e~ti~----------ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~  400 (445)
T KOG2139|consen  331 DLQEVTIC----------AGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY  400 (445)
T ss_pred             cchhhhhh----------cCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence            00000000          0001124567778888888888875433        34777887643322221 12222223


Q ss_pred             eeEEEEcC---CCCEEEEecCCceEEEeeccc
Q psy988          297 QIKASFSH---DGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       297 v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      ..-++|+|   ++++|..+-..|.+.-|++.-
T Consensus       401 P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  401 PAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             CceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            34567776   677888887888888877653

>KOG0644|consensus

Probab=99.78  E-value=5.6e-19  Score=152.04  Aligned_cols=258  Identities=20%  Similarity=0.315  Sum_probs=192.9

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |..|+||..+++.++.... |.+.|+.++.+. +.-++++++.|..|++|.+..+..+  ..+.+|++.|++++|+|-. 
T Consensus       211 d~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~~pv--svLrghtgavtaiafsP~~-  286 (1113)
T KOG0644|consen  211 DRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDGAPV--SVLRGHTGAVTAIAFSPRA-  286 (1113)
T ss_pred             cceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCCchH--HHHhccccceeeeccCccc-
Confidence            5679999999999999886 999999999998 8889999999999999999999877  7899999999999999954 


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                         +.+.||++++||.+-.-   .. .............+..+.|..++..+++++.|+.-..|.+......      ..
T Consensus       287 ---sss~dgt~~~wd~r~~~---~~-y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~  353 (1113)
T KOG0644|consen  287 ---SSSDDGTCRIWDARLEP---RI-YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR------SN  353 (1113)
T ss_pred             ---cCCCCCceEeccccccc---cc-cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh------cc
Confidence               77899999999988111   11 1111111122346777888888899999999999888876532211      11


Q ss_pred             cccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          161 VSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       161 ~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                        ...-+..+.+- .+.+++-.+-.+.+|++.++            .....+.+|...+..+.++|-+..+         
T Consensus       354 --~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------------~l~H~l~ghsd~~yvLd~Hpfn~ri---------  410 (1113)
T KOG0644|consen  354 --LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------------QLLHNLMGHSDEVYVLDVHPFNPRI---------  410 (1113)
T ss_pred             --ceEEEeccccccccceeeeeeeEeeeeecccc------------hhhhhhcccccceeeeeecCCCcHh---------
Confidence              01111122121 35566666778899998654            3445567777778888887766554         


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                                               ..+++.||...|||+-.|.+++.+...  ...+...+||+||..++....-|.++
T Consensus       411 -------------------------~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~  463 (1113)
T KOG0644|consen  411 -------------------------AMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLY  463 (1113)
T ss_pred             -------------------------hhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceE
Confidence                                     356799999999999999888877632  34567789999999999988889999


Q ss_pred             Eeecccc
Q psy988          320 IWKTHHD  326 (408)
Q Consensus       320 iw~~~~~  326 (408)
                      |.....+
T Consensus       464 i~g~gqs  470 (1113)
T KOG0644|consen  464 ILGTGQS  470 (1113)
T ss_pred             EeccCCC
Confidence            9887654

>KOG1334|consensus

Probab=99.78  E-value=3.9e-18  Score=138.10  Aligned_cols=288  Identities=17%  Similarity=0.193  Sum_probs=207.9

Q ss_pred             CceEEEEeccCCeeEeEEE--eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISRKECLCCFQ--HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      |..|.+||...++....+.  |...|..-.|-|. +.+-+++++.||.+++=.+.. +.+...+.+..|.++|.-++.-|
T Consensus       163 D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p  242 (559)
T KOG1334|consen  163 DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEP  242 (559)
T ss_pred             cceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecC
Confidence            6789999999999888875  9999999899884 456799999999999987654 44443567888999999999988


Q ss_pred             CC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccc---
Q psy988           78 NG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLS---  152 (408)
Q Consensus        78 ~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---  152 (408)
                      +. .-|.+++.|+.+.-+|++.......+........  ..-....++..|... .+++++.|..+++||.+.-...   
T Consensus       243 ~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~--~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n  320 (559)
T KOG1334|consen  243 DSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK--ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN  320 (559)
T ss_pred             CCCCcccccccccceeeeeeccCCccceeeeeccCCc--cceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence            75 4588999999999999988766554442221111  112578888898665 7889999999999998753221   


Q ss_pred             ---eeecCc----cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc-cccccceEEEEEEe
Q psy988          153 ---CKYKGY----VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFA  224 (408)
Q Consensus       153 ---~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~  224 (408)
                         ..+..+    .....|++++|+.++.-|++...|-.|++|.-..+....-............ +++|...       
T Consensus       321 ~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-------  393 (559)
T KOG1334|consen  321 GVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-------  393 (559)
T ss_pred             chhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------
Confidence               222111    3456788999998888888888899999995433211000000000111111 3444321       


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeec-cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIE-PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  303 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s  303 (408)
                                                ..|.++. |-|...++++|+.-|.|.||+-.+++.+..+.+..+  -|.|+.-+
T Consensus       394 --------------------------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpH  445 (559)
T KOG1334|consen  394 --------------------------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPH  445 (559)
T ss_pred             --------------------------cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCC
Confidence                                      2233343 356778889999999999999999999988888666  78899999


Q ss_pred             CCCCEEEEecCCceEEEeecccc
Q psy988          304 HDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       304 ~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      |.-..||+++-|..|+||-..+.
T Consensus       446 P~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  446 PHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCchhhccCCccceeeecCCcc
Confidence            99999999999999999987543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.78  E-value=6.3e-14  Score=118.34  Aligned_cols=284  Identities=15%  Similarity=0.194  Sum_probs=176.5

Q ss_pred             ceEEEEec--cCCeeEe--EEEeCCceEEEEEcCCCCCEEEEEeC----CCcEEEEecCCC--CceeeeeecCCceeeEE
Q psy988            3 KTVRLWHI--SRKECLC--CFQHIDFVTAICFHPRDDRYFLSGSL----DGKLRLWNIPDK--KVAVWNEVEGQTKLITA   72 (408)
Q Consensus         3 g~i~vwd~--~~~~~~~--~~~h~~~v~~~~~sp~~~~~l~t~~~----dg~i~iw~~~~~--~~~~~~~~~~~~~~v~~   72 (408)
                      +.|.+|++  ++++...  ...-......++++| ++++|.+...    ++.|..|.+...  .+...............
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            57888877  5555433  233667778899999 8888888876    478999998764  44443444434455678


Q ss_pred             EEEecCCCEEEEEec-CCEEEEEeccCC-eeeEEEEEeec-----cccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEE
Q psy988           73 ANFCENGKFAVVGSY-DGRCIFYTTDQL-KYHTQIHVRST-----RGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLY  144 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~-dg~i~iw~~~~~-~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~  144 (408)
                      ++++|++++|+++.. +|.+.++++... ...........     ...........++.++|+++++++... ...|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            999999999999875 799999999874 32222211111     111123456789999999999988743 4579999


Q ss_pred             EccCcc--cc--eeecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          145 DLRDLN--LS--CKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       145 d~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      ++....  ..  ..+... .......+.|+|+++++++..+ ++.|.++++........                  .+.
T Consensus       172 ~~~~~~~~l~~~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~------------------~~~  232 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT------------------EIQ  232 (345)
T ss_dssp             EE-TTS-TEEEEEEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE------------------EEE
T ss_pred             EEeCCCceEEEeeccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee------------------EEE
Confidence            997655  21  122222 2244678999999999876654 67899998862211110                  111


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcC--CCeeeeEEeeccceec
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLR--DLNLSCKYKGYVNVSS  296 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~~~~~~~~~~~~~  296 (408)
                      .+...|.+.                   ........+.++|||++|+++ ...+.|.+|++.  ++++...-........
T Consensus       233 ~~~~~~~~~-------------------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~  293 (345)
T PF10282_consen  233 TISTLPEGF-------------------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF  293 (345)
T ss_dssp             EEESCETTS-------------------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred             Eeeeccccc-------------------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence            111111100                   011245667777777777765 456889999993  3333222222222334


Q ss_pred             eeEEEEcCCCCEEEEec-CCceEEEeeccc
Q psy988          297 QIKASFSHDGKYIVSGS-ENQCIYIWKTHH  325 (408)
Q Consensus       297 v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~  325 (408)
                      ...++++|+|++|+++. .++.|.+|+++.
T Consensus       294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            67899999999999876 567999998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2111|consensus

Probab=99.77  E-value=1.5e-15  Score=116.84  Aligned_cols=180  Identities=16%  Similarity=0.209  Sum_probs=138.5

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-CceeeeeecCCceeeEEEEEecCCCE
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-KVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      +.|.|||=...+++.++....+|.++.+.+ +  .|++.- .+.|+||...+. +..........+....+++-..+..+
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            578999988889999999999999999986 3  466654 589999998743 33321222222334444444444445


Q ss_pred             EEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe-EEEEEccCcccceeecCcc
Q psy988           82 AVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR-IRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        82 l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~  159 (408)
                      ||.-+ .-|.|+|-|+...+..      ......+|.+.|.|++.+.+|..+++++..|+ |||||..+++.+..+....
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence            55433 4589999998765542      11223467889999999999999999999887 7999999999999998877


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      ....+.+++|+|+..+|++++..|++.+|.++.
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            778899999999999999999999999999875

>KOG1523|consensus

Probab=99.77  E-value=2.5e-16  Score=121.09  Aligned_cols=215  Identities=10%  Similarity=0.076  Sum_probs=156.8

Q ss_pred             ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      +..-..+|+|.+|++|+..+|.+.....|.||.....+.-...     .....|...|++++|+|..+.|++++.|..-+
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~-----htls~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA-----HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec-----eehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            3334578999999999999999999999999998876632222     22345677999999999999999999999999


Q ss_pred             EEEc-cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          143 LYDL-RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       143 i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                      +|.. ..++-..++..........++.|+|.++.|++|+....|.+|-++....=..                       
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV-----------------------  137 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV-----------------------  137 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh-----------------------
Confidence            9998 4444333333222334477899999999999999999999987753211000                       


Q ss_pred             EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC------------------Ce
Q psy988          222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD------------------LN  283 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~  283 (408)
                                          ...+-......|+++.|+|++-++++|+.|+..|+|...-                  |+
T Consensus       138 --------------------sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~  197 (361)
T KOG1523|consen  138 --------------------SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ  197 (361)
T ss_pred             --------------------hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH
Confidence                                0001112344566777777778889999999999997431                  12


Q ss_pred             eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          284 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +..++.  ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus       198 lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  198 LMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             HHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            222232  234578899999999999999999999999987653

>KOG2321|consensus

Probab=99.77  E-value=2.6e-16  Score=130.37  Aligned_cols=297  Identities=12%  Similarity=0.176  Sum_probs=201.7

Q ss_pred             EeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           16 LCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        16 ~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      ++.++|...-+.|..+| ||+|+ |||..--.|++||+..-.+..-+.+.  ...|.-.-++.|-..++.-..|.+|.+-
T Consensus        45 iQdfe~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFERhlD--ae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   45 IQDFEMPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFERHLD--AEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             HHhcCCccccceeEecC-CCcEEEEecccCCceEEEEcccceeeeeeccc--ccceeEEEeccchhhheEeecCceeeeh
Confidence            34456889999999999 77776 56667789999999876554322222  2345555555555556666677777665


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      .-........+           ...-..++++.-..-|++++....|+-++++.|..+..+......  +.++..++...
T Consensus       122 ak~G~hy~~RI-----------P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~--lN~v~in~~hg  188 (703)
T KOG2321|consen  122 AKYGRHYRTRI-----------PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE--LNVVSINEEHG  188 (703)
T ss_pred             hhcCeeeeeec-----------CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc--ceeeeecCccc
Confidence            43332211111           123455666654445666666678999999999988887765443  66788999899


Q ss_pred             EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988          175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS  254 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (408)
                      .|++|+.+|.|..||.+......            .+...    ..+.-.|.                    ......|+
T Consensus       189 Lla~Gt~~g~VEfwDpR~ksrv~------------~l~~~----~~v~s~pg--------------------~~~~~svT  232 (703)
T KOG2321|consen  189 LLACGTEDGVVEFWDPRDKSRVG------------TLDAA----SSVNSHPG--------------------GDAAPSVT  232 (703)
T ss_pred             eEEecccCceEEEecchhhhhhe------------eeecc----cccCCCcc--------------------ccccCcce
Confidence            99999999999999987532111            00000    00000010                    01223578


Q ss_pred             eeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC--CCEEEEecCCceEEEeeccccCccccc
Q psy988          255 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                      ++.|+.+|-.+++|+.+|.+.|||+++.+++.. ..|....+|..+.|-+.  ++.+++. ....++|||-.++      
T Consensus       233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G------  304 (703)
T KOG2321|consen  233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG------  304 (703)
T ss_pred             EEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccC------
Confidence            888888899999999999999999998877644 45667778999999775  4455554 3568999999987      


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                            +....+.. ...++.+++-|                ++.++++|-.++.+..|=++.
T Consensus       305 ------k~~asiEp-t~~lND~C~~p----------------~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  305 ------KPMASIEP-TSDLNDFCFVP----------------GSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ------Cceeeccc-cCCcCceeeec----------------CCceEEEecCCCcceeEEccc
Confidence                  34444443 34599999999                888999999888887776654

>KOG1240|consensus

Probab=99.76  E-value=1.6e-16  Score=142.68  Aligned_cols=275  Identities=13%  Similarity=0.127  Sum_probs=173.5

Q ss_pred             eeecCCceeeEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           61 NEVEGQTKLITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      ..+..|...+..++.++.. .++++|+.||+|++|+.......... .+........+..+.++...+.++.+++++.||
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-eeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            6788899999988887654 99999999999999998764432111 111111112346889999999999999999999


Q ss_pred             eEEEEEccCcccc-------eeecCccccccceEE-EEec-CCC-EEEEeecCceEEEeeeccceeeeeecccCCCcccc
Q psy988          140 RIRLYDLRDLNLS-------CKYKGYVNVSSQIKA-SFSH-DGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  209 (408)
Q Consensus       140 ~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~-~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (408)
                      .|++.++...+..       .....+.. ..+.++ +|.. .+. .++.+...+.|..||++.......           
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~----------- 1188 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR----------- 1188 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCC-CceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-----------
Confidence            9999998752111       11111112 222222 2222 233 677888889999999875321110           


Q ss_pred             ccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe
Q psy988          210 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  289 (408)
Q Consensus       210 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  289 (408)
                                                        ...+...+.|++++.+|-+.++++|+..|.+.+||++-+.++....
T Consensus      1189 ----------------------------------lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1189 ----------------------------------LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             ----------------------------------hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence                                              0011234556777777778889999999999999999888887776


Q ss_pred             eccceeceeEEEEcCCC---CEEEE-ec-CCceEEEeeccccCccccccccCcccccee-ee------eeccceEEEEec
Q psy988          290 GYVNVSSQIKASFSHDG---KYIVS-GS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IK------AHNAVVTCAVFA  357 (408)
Q Consensus       290 ~~~~~~~v~~~~~s~~~---~~l~~-~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~------~h~~~v~~~~~~  357 (408)
                      ... ..++..+..+|-.   ...++ ++ ..+.|.+|++.++..............+.. ..      .+.-......+.
T Consensus      1235 ~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1235 HPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred             Ccc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence            433 3566677666633   34444 44 578899999998854443322211001100 00      111111222222


Q ss_pred             CCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          358 PCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       358 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      .                .+.++.+|+.|+.||.||.......
T Consensus      1314 ~----------------~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1314 E----------------KNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             c----------------CCceeeecCCccceeeccCCCcccc
Confidence            2                4568999999999999998876543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=3.1e-16  Score=136.71  Aligned_cols=175  Identities=14%  Similarity=0.073  Sum_probs=120.6

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ..|.+||...........|...+.+.+|+| +++.|+..+.+   ..|.+||+.+++...   +....+...+..|+|||
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceECCCC
Confidence            368999997766666666888999999999 99989887743   469999998887653   33334445678999999


Q ss_pred             CEEE-EEecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCe--EEEEEccCcccce
Q psy988           80 KFAV-VGSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSR--IRLYDLRDLNLSC  153 (408)
Q Consensus        80 ~~l~-~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~  153 (408)
                      +.|+ +.+.+|  .|.+||+.+++.....         .+.......+|+|+++.|+.++. +|.  |+++|+.+++...
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLTRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            9776 445555  6999999876532111         11223456799999999888764 444  7777776665432


Q ss_pred             eecCccccccceEEEEecCCCEEEEeecCc---eEEEeeeccc
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHHD  193 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  193 (408)
                       +....  ......+|+|+|++|+..+.++   .|.+||+.++
T Consensus       331 -lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        331 -LTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             -eecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence             22111  1233578999999998765433   6889988653

>KOG1272|consensus

Probab=99.76  E-value=1.6e-17  Score=133.81  Aligned_cols=262  Identities=16%  Similarity=0.209  Sum_probs=189.6

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      .-.-+.+.++. +|..|+.|+.-|.|..+|..++....  .+. -...|..+.|..+.+++|++ ....+.|||-..-+.
T Consensus       129 eFGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~--Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  129 EFGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHF--EIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTEL  203 (545)
T ss_pred             ccCCeeeeecC-CccEEEecCCccceeeeecccceeee--eee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEE
Confidence            34567788888 99999999999999999999988763  332 24568899999888888776 677899999776543


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      ..      ...    ...|..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.  +..++-+|-+..+-+|..
T Consensus       204 HC------lk~----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~--~~vm~qNP~NaVih~Ghs  271 (545)
T KOG1272|consen  204 HC------LKR----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR--TDVMKQNPYNAVIHLGHS  271 (545)
T ss_pred             ee------hhh----cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc--cchhhcCCccceEEEcCC
Confidence            21      111    137889999998888888899999999999999998887665544  445778888888999999


Q ss_pred             CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC
Q psy988          182 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG  261 (408)
Q Consensus       182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (408)
                      .|+|.+|....            ..++..+..|.++|.++++.++                                   
T Consensus       272 nGtVSlWSP~s------------kePLvKiLcH~g~V~siAv~~~-----------------------------------  304 (545)
T KOG1272|consen  272 NGTVSLWSPNS------------KEPLVKILCHRGPVSSIAVDRG-----------------------------------  304 (545)
T ss_pred             CceEEecCCCC------------cchHHHHHhcCCCcceEEECCC-----------------------------------
Confidence            99999998754            3455666777777776666655                                   


Q ss_pred             CCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccc
Q psy988          262 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW  341 (408)
Q Consensus       262 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  341 (408)
                      |+|+++.+.|..++|||+++...+.++..   ......+++|..| +|| .+....|.||.=......      ....+.
T Consensus       305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~------~~~~pY  373 (545)
T KOG1272|consen  305 GRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLA-LSYGDHVQIWKDALKGSG------HGETPY  373 (545)
T ss_pred             CcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-cee-eecCCeeeeehhhhcCCC------CCCcch
Confidence            55678999999999999999886666654   2245567887655 333 344557999964322110      000111


Q ss_pred             eeeeeeccceEEEEecCC
Q psy988          342 EGIKAHNAVVTCAVFAPC  359 (408)
Q Consensus       342 ~~~~~h~~~v~~~~~~~~  359 (408)
                      . -....+.|..+.|.|-
T Consensus       374 m-~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  374 M-NHRCGGPVEDLRFCPY  390 (545)
T ss_pred             h-hhccCcccccceeccH
Confidence            1 1112358999999993

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2.6e-16  Score=137.14  Aligned_cols=234  Identities=16%  Similarity=0.159  Sum_probs=146.7

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                      ..|.+||.......   .+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.....   .      ..+...
T Consensus       184 ~~l~i~D~~g~~~~---~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~------~~g~~~  251 (433)
T PRK04922        184 YALQVADSDGYNPQ---TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---S------FRGING  251 (433)
T ss_pred             EEEEEECCCCCCce---EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---c------CCCCcc
Confidence            36899998765443   455677789999999999999987743   47999999876542211   1      112345


Q ss_pred             EEeeCCCCCeEEEe-eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cce--EEEeeecccee
Q psy988          122 GIEPMPGEDKILVT-SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQC--IYIWKTHHDYA  195 (408)
Q Consensus       122 ~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~  195 (408)
                      ...|+|+++.++.. +.+|  .|++||+.+++... +..+..  .....+|+|||++|+..+. +|.  |+++|+.++..
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            78999999988654 4444  69999998876433 333222  2345789999998887764 444  55555533211


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC---C
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND---S  272 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~  272 (408)
                      .                       .+.+                         ........+|+|+|++|+..+.+   .
T Consensus       329 ~-----------------------~lt~-------------------------~g~~~~~~~~SpDG~~Ia~~~~~~~~~  360 (433)
T PRK04922        329 E-----------------------RLTF-------------------------QGNYNARASVSPDGKKIAMVHGSGGQY  360 (433)
T ss_pred             E-----------------------Eeec-------------------------CCCCccCEEECCCCCEEEEEECCCCce
Confidence            0                       0000                         00112234566666666654332   3


Q ss_pred             eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC---ceEEEeeccccCccccccccCccccceeeeeecc
Q psy988          273 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  349 (408)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~  349 (408)
                      .|.+||+.+++.. .+... .  ......|+|||++|+..+.+   +.|+++++...             ....+..+.+
T Consensus       361 ~I~v~d~~~g~~~-~Lt~~-~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-------------~~~~l~~~~g  423 (433)
T PRK04922        361 RIAVMDLSTGSVR-TLTPG-S--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-------------VRQRLVSADG  423 (433)
T ss_pred             eEEEEECCCCCeE-ECCCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-------------ceEEcccCCC
Confidence            6999999887654 33211 1  23357999999998876553   45777777542             3344444566


Q ss_pred             ceEEEEecC
Q psy988          350 VVTCAVFAP  358 (408)
Q Consensus       350 ~v~~~~~~~  358 (408)
                      .+...+|+|
T Consensus       424 ~~~~p~wsp  432 (433)
T PRK04922        424 EVREPAWSP  432 (433)
T ss_pred             CCCCCccCC
Confidence            778888887

>KOG1310|consensus

Probab=99.75  E-value=5.9e-17  Score=133.44  Aligned_cols=225  Identities=17%  Similarity=0.260  Sum_probs=150.6

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSND  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  138 (408)
                      ..+.+|.+.|.++.|+.+|.+|++|+.|-.+.|||.-..+....+.       .+|...|.++.|-|  +++.+++|..|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------TGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------cccccceeEEeeeccCCCeEEEeccCc
Confidence            5789999999999999999999999999999999987655443332       46778999999998  45678888999


Q ss_pred             CeEEEEEccCc----------ccceeecCccccccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCcc
Q psy988          139 SRIRLYDLRDL----------NLSCKYKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  207 (408)
Q Consensus       139 g~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (408)
                      ..|+++|+...          .....+..|...  +..++..|++ ..+.++++||+|+-+|++.........  .....
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r--VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--~~~~~  192 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDR--VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--DCPSI  192 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhh--hhheecCCCCCceEEEecCCcceeeecccCCccCCccc--cccHH
Confidence            99999999742          223334444433  5667888888 789999999999999998642211000  00001


Q ss_pred             ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC------
Q psy988          208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD------  281 (408)
Q Consensus       208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------  281 (408)
                      +..+...--...++.++|...                                  .+|++|+.|-..++||.+.      
T Consensus       193 l~ny~~~lielk~ltisp~rp----------------------------------~~laVGgsdpfarLYD~Rr~lks~~  238 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRP----------------------------------YYLAVGGSDPFARLYDRRRVLKSFR  238 (758)
T ss_pred             HHHhchhhheeeeeeecCCCC----------------------------------ceEEecCCCchhhhhhhhhhccCCC
Confidence            111111112334444444433                                  4578888898999999431      


Q ss_pred             --Ce----------eeeEEe-ecc---------ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          282 --LN----------LSCKYK-GYV---------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       282 --~~----------~~~~~~-~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                        +.          ++..|. +|.         ....++-+.|+|+|.-|++.-..-.|+++|++.++...
T Consensus       239 s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  239 SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence              11          111111 111         01124567899999877776556689999999875443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.1e-15  Score=132.70  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=115.3

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ..|.+||...........+...+.+.+|+| |++.|+..+.+   ..|.+||+.+++...   +....+.+....|+|||
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCC
Confidence            357788876555555556888999999999 89988877643   359999999887653   33333456788999999


Q ss_pred             CEEE-EEecCCEEEEEecc--CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEc--cCcccce
Q psy988           80 KFAV-VGSYDGRCIFYTTD--QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDL--RDLNLSC  153 (408)
Q Consensus        80 ~~l~-~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~  153 (408)
                      +.|+ +.+.+|...+|.++  +... ..     .   ..+........|+|||+.|+..+. +|...+|.+  .+++...
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~-----l---t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSGL-RR-----L---TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCc-EE-----C---CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence            9886 46677876666553  3321 11     1   111224456789999999887654 455566654  4443322


Q ss_pred             eecCccccccceEEEEecCCCEEEEeecCc---eEEEeeeccc
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHHD  193 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  193 (408)
                       +....  .......|+|+|++|+..+.++   .|++||+.++
T Consensus       323 -lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        323 -VTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             -EecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence             22111  1123468999999998776554   6899998654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.74  E-value=5e-15  Score=124.55  Aligned_cols=281  Identities=12%  Similarity=0.045  Sum_probs=164.6

Q ss_pred             CCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           35 DRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        35 ~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      ++++ ++-..++.|.+.|..+.+..  ..+......-..+.|+|||+++++++.||.|.++|+.+.+........     
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~--~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-----   77 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVV--ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-----   77 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEE--EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEE--EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----
Confidence            3444 44556899999999988876  556544444456789999999999999999999999999877666532     


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccc-----cccceEEEEecCCCEEEEeec-CceEE
Q psy988          114 NATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVN-----VSSQIKASFSHDGKYIVSGSE-NQCIY  186 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~-dg~i~  186 (408)
                          ....++++++||++++++. ..+.+.++|.++.+.++.+.....     ...+..+..+|....++..-. .+.|.
T Consensus        78 ----~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~  153 (369)
T PF02239_consen   78 ----GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW  153 (369)
T ss_dssp             ----SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE
T ss_pred             ----CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE
Confidence                3678899999999999875 589999999999998887654322     234556777787775555544 47787


Q ss_pred             EeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE
Q psy988          187 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL  266 (408)
Q Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (408)
                      +.|........           ....                                   ..........|+|++++++
T Consensus       154 vVdy~d~~~~~-----------~~~i-----------------------------------~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  154 VVDYSDPKNLK-----------VTTI-----------------------------------KVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             EEETTTSSCEE-----------EEEE-----------------------------------E--TTEEEEEE-TTSSEEE
T ss_pred             EEEeccccccc-----------eeee-----------------------------------cccccccccccCcccceee
Confidence            77765421110           0000                                   1112233445566666555


Q ss_pred             E-ecCCCeEEEEEcCCCeeeeEEeeccc--eeceeEEEEcCCC-CEEEEec---------CCceEEEeeccccCcccccc
Q psy988          267 V-TSNDSRIRLYDLRDLNLSCKYKGYVN--VSSQIKASFSHDG-KYIVSGS---------ENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       267 ~-~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~-~~l~~~~---------~dg~i~iw~~~~~~~~~~~~  333 (408)
                      + ...+..|.++|.++++....+.....  ......+ .+|.. ...+++.         ....+.+|+...        
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~--------  258 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA--------  258 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB--------
T ss_pred             ecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhc--------
Confidence            5 45667899999999888776543211  1122221 22221 1122221         112333444443        


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE----ecCCeEEEEeCCCCCCcccc
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA----DFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~----~~dg~v~iw~~~~~~~~~~~  402 (408)
                          ++.++.+....++ .-+..+|                ++++|...    ...+.|.++|.++.+....+
T Consensus       259 ----wkvv~~I~~~G~g-lFi~thP----------------~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i  310 (369)
T PF02239_consen  259 ----WKVVKTIPTQGGG-LFIKTHP----------------DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI  310 (369)
T ss_dssp             ----TSEEEEEE-SSSS---EE--T----------------T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H
T ss_pred             ----CeEEEEEECCCCc-ceeecCC----------------CCccEEeeccCCCCCceEEEEECcCcceeEEE
Confidence                3677777776666 6788899                88888877    44589999999998655554

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.5e-13  Score=107.14  Aligned_cols=286  Identities=15%  Similarity=0.211  Sum_probs=180.5

Q ss_pred             ceEEEEeccCC----eeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---CcEEEEecCC--CCceeeeeecCCceeeEEE
Q psy988            3 KTVRLWHISRK----ECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPD--KKVAVWNEVEGQTKLITAA   73 (408)
Q Consensus         3 g~i~vwd~~~~----~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~--~~~~~~~~~~~~~~~v~~~   73 (408)
                      .-|++|++.+.    ..+....+.+.++-|+|+| +++.|.++-.+   |.|.-|.++.  |.............+.+.+
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            46899998732    3344455889999999999 89888888654   7788887765  5554433333333445889


Q ss_pred             EEecCCCEEEEEecC-CEEEEEeccCC-eeeEEEEEeeccccccC----CCCeEEEeeCCCCCeEEEeeC-CCeEEEEEc
Q psy988           74 NFCENGKFAVVGSYD-GRCIFYTTDQL-KYHTQIHVRSTRGKNAT----GRKISGIEPMPGEDKILVTSN-DSRIRLYDL  146 (408)
Q Consensus        74 ~~~~~~~~l~~~~~d-g~i~iw~~~~~-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~  146 (408)
                      +++++|++++++... |.|.++.++.. ............+...|    ...+....+.|++++|++..- .-.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            999999999998865 79999998663 22221111111111111    123788899999999998843 236999999


Q ss_pred             cCcccceeecCc-cccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          147 RDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       147 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      ..+.+...-... ........+.|+|++++.++..+ +++|.+|........+..+                  ..+..-
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l------------------Q~i~tl  236 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL------------------QTIDTL  236 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe------------------eeeccC
Confidence            977654332111 22344667999999999877655 8899999987642222111                  111111


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CCeEEEEEcCC--CeeeeEEeeccceeceeEEE
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRD--LNLSCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~  301 (408)
                      |..                   -........|.+++||++|.++.. ...|.+|.+..  +++...-....+........
T Consensus       237 P~d-------------------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~  297 (346)
T COG2706         237 PED-------------------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN  297 (346)
T ss_pred             ccc-------------------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence            110                   012234455666777777777632 34677777654  33222211222233456789


Q ss_pred             EcCCCCEEEEecCC-ceEEEeecccc
Q psy988          302 FSHDGKYIVSGSEN-QCIYIWKTHHD  326 (408)
Q Consensus       302 ~s~~~~~l~~~~~d-g~i~iw~~~~~  326 (408)
                      |+|+|++|+++..+ ..|.+|.++..
T Consensus       298 i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         298 INPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             eCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            99999999988875 47899988754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.4e-15  Score=131.39  Aligned_cols=173  Identities=13%  Similarity=0.070  Sum_probs=121.1

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ..|.+||.+.........|...+.+.+|+| ||+.|+..+.   +..|.+||+.+++..   .+..+.+.+...+|+|||
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCC
Confidence            368899987776666667889999999999 8998888764   468999999888754   344556677889999999


Q ss_pred             CEEE-EEecCCE--EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C--CeEEEEEccCcccce
Q psy988           80 KFAV-VGSYDGR--CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D--SRIRLYDLRDLNLSC  153 (408)
Q Consensus        80 ~~l~-~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~  153 (408)
                      +.|+ +.+.++.  |.+||+.++.... +     .   .+........|+||++.++..+. +  ..|+++|+.+++...
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-L-----t---~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~  328 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-L-----T---DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR  328 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceEE-c-----c---CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence            9876 4455554  7777887664321 1     1   12234566899999999887764 3  368888987665433


Q ss_pred             eecCccccccceEEEEecCCCEEEEeecC---ceEEEeeec
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTH  191 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~  191 (408)
                       +....  .......|+|+|++|+....+   ..|.+||+.
T Consensus       329 -lt~~~--~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        329 -ISFGG--GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             -eecCC--CcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence             32221  223457899999999876543   257777764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.8e-15  Score=131.40  Aligned_cols=236  Identities=13%  Similarity=0.140  Sum_probs=143.8

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                      ..|.++|......   ..+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.....   .      ..+...
T Consensus       176 ~~L~~~D~dG~~~---~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~------~~g~~~  243 (427)
T PRK02889        176 YQLQISDADGQNA---QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---N------FKGSNS  243 (427)
T ss_pred             cEEEEECCCCCCc---eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---c------CCCCcc
Confidence            3577777754433   3455677789999999999999887643   46999999877543211   1      112456


Q ss_pred             EEeeCCCCCeEEE-eeCCCeEEEEE--ccCcccceeecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeee
Q psy988          122 GIEPMPGEDKILV-TSNDSRIRLYD--LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKF  197 (408)
Q Consensus       122 ~~~~~~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  197 (408)
                      ...|+||++.|+. .+.+|...+|.  +..+. ...+..+..  ......|+|||++|+..+. +|...+|.+.....  
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--  318 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--  318 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--
Confidence            7899999998875 46677666654  44443 333433222  2345789999998886654 45666665532100  


Q ss_pred             eecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC---eE
Q psy988          198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS---RI  274 (408)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i  274 (408)
                                         ....+.+.                         ........|+|||++|+..+.++   .|
T Consensus       319 -------------------~~~~lt~~-------------------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I  354 (427)
T PRK02889        319 -------------------AAQRVTFT-------------------------GSYNTSPRISPDGKLLAYISRVGGAFKL  354 (427)
T ss_pred             -------------------ceEEEecC-------------------------CCCcCceEECCCCCEEEEEEccCCcEEE
Confidence                               00001100                         01112345677777776655443   69


Q ss_pred             EEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc---eEEEeeccccCccccccccCccccceeeeeeccce
Q psy988          275 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  351 (408)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  351 (408)
                      .+||+.+++.......  .  ......|+|||++|+..+.++   .+++.++..             .....+..+.+.+
T Consensus       355 ~v~d~~~g~~~~lt~~--~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-------------~~~~~l~~~~g~~  417 (427)
T PRK02889        355 YVQDLATGQVTALTDT--T--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-------------RIKQRLSVQGGDV  417 (427)
T ss_pred             EEEECCCCCeEEccCC--C--CccCceECCCCCEEEEEEecCCCEEEEEEECCC-------------CceEEeecCCCCC
Confidence            9999988765433222  1  234679999999988776543   355555532             2334455566778


Q ss_pred             EEEEecC
Q psy988          352 TCAVFAP  358 (408)
Q Consensus       352 ~~~~~~~  358 (408)
                      ...+|+|
T Consensus       418 ~~p~wsp  424 (427)
T PRK02889        418 REPSWGP  424 (427)
T ss_pred             CCCccCC
Confidence            8889988

>KOG3881|consensus

Probab=99.72  E-value=2e-15  Score=119.31  Aligned_cols=251  Identities=15%  Similarity=0.149  Sum_probs=173.8

Q ss_pred             eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeee----eecCCceeeEEEEEecCCCEEEEEecCCEEEEEe
Q psy988           21 HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        21 h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~   95 (408)
                      -...|.+++|.-+ ..+.|...+.|..+..+.+....+....    .......+|..+...  ...|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            4456777777652 2334555556777777777666554221    334445666666542  34688888999999999


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEE-eeCC--CeEEEEEccCcccceeecCc-------cccccce
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILV-TSND--SRIRLYDLRDLNLSCKYKGY-------VNVSSQI  165 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--g~i~i~d~~~~~~~~~~~~~-------~~~~~~~  165 (408)
                      ...+..........     .....+..+.-++....+++ |+..  ..+.+||++..+.+..-+..       .-+..+.
T Consensus       132 ~k~~d~hss~l~~l-----a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKL-----ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             ccCCccccccceee-----ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence            98655331111111     11246677777776666555 7877  78999999987554433221       2234566


Q ss_pred             EEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988          166 KASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  243 (408)
Q Consensus       166 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
                      .+.|-+.  ...|++++.-+.+++||.+.+.                     .+|.++.|                    
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------------RPV~~fd~--------------------  245 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------------RPVAQFDF--------------------  245 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccC---------------------cceeEecc--------------------
Confidence            7888887  7889999999999999986431                     22333222                    


Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE-EeeccceeceeEEEEcCCCCEEEEecCCceEEEee
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  322 (408)
                           ....++++...|+++++++|..-+.+..||++.++.... +.+..+  .+.++..+|.+++||+++-|..|+|+|
T Consensus       246 -----~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  246 -----LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             -----ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC--CcceEEEcCCCceEEeeccceeEEEee
Confidence                 234566666677788889999999999999999988776 666655  788999999999999999999999999


Q ss_pred             cccc
Q psy988          323 THHD  326 (408)
Q Consensus       323 ~~~~  326 (408)
                      +.+.
T Consensus       319 ~ktr  322 (412)
T KOG3881|consen  319 IKTR  322 (412)
T ss_pred             cccc
Confidence            9984

>KOG3881|consensus

Probab=99.72  E-value=1.7e-15  Score=119.69  Aligned_cols=261  Identities=13%  Similarity=0.193  Sum_probs=175.5

Q ss_pred             CceeeEEEEEecCCC--EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988           66 QTKLITAANFCENGK--FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        66 ~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  143 (408)
                      ....+..++|..+++  .+...+.+..+..+.+..........  ..........+|..++..  +..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~--~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD--DAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc--cccccccccccccchhhc--CCEEEEEecCCcEEE
Confidence            345677888875543  45555567777777776655433321  011111223466666554  557888888999999


Q ss_pred             EEccCcc----cceeecCccccccceEEEEecCCC-EEEEeecC--ceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          144 YDLRDLN----LSCKYKGYVNVSSQIKASFSHDGK-YIVSGSEN--QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       144 ~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      |....+.    .+..+..+.   .+..+.-++... .+++|+..  ..+.+||++.....+.....+...     .+-  
T Consensus       130 ~~~k~~d~hss~l~~la~g~---g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~-----L~L--  199 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATGP---GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR-----LGL--  199 (412)
T ss_pred             EeccCCccccccceeeecCC---ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc-----ccc--
Confidence            9988443    222222222   233344555444 45568888  789999998764443311110000     000  


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC--CCeEEEecCCCeEEEEEcCCCe-eeeEEeeccc
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVN  293 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~  293 (408)
                                                     .-.-.++.+.|.+.  ...|++++.-+.+++||.+.++ ++..+....+
T Consensus       200 -------------------------------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~  248 (412)
T KOG3881|consen  200 -------------------------------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN  248 (412)
T ss_pred             -------------------------------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence                                           11224556667666  7889999999999999998764 5556655444


Q ss_pred             eeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccccee-eeeeccceEEEEecCCchhhhhccCCCCC
Q psy988          294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFAPCPELIIAQMEPDKS  372 (408)
Q Consensus       294 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  372 (408)
                        +++++...|++++|++|..-|.+..||++.+            ++... +.+..+.|+++..+|              
T Consensus       249 --~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~------------kl~g~~~kg~tGsirsih~hp--------------  300 (412)
T KOG3881|consen  249 --PISSTGLTPSGNFIYTGNTKGQLAKFDLRGG------------KLLGCGLKGITGSIRSIHCHP--------------  300 (412)
T ss_pred             --cceeeeecCCCcEEEEecccchhheecccCc------------eeeccccCCccCCcceEEEcC--------------
Confidence              7889999999999999999999999999987            34443 778899999999999              


Q ss_pred             CCcccEEEEEecCCeEEEEeCCCCCCccc
Q psy988          373 ESTGYVLVSADFNGVIRVFLNKTKPKHSS  401 (408)
Q Consensus       373 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  401 (408)
                        ...+||++|-|..|||+|+++.+....
T Consensus       301 --~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  301 --THPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             --CCceEEeeccceeEEEeecccchhhhh
Confidence              889999999999999999999665443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=9.7e-15  Score=127.59  Aligned_cols=233  Identities=15%  Similarity=0.104  Sum_probs=144.0

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec---CCEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY---DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                      ..|.++|.++....   .+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.....         ...+.+.
T Consensus       182 ~~l~~~d~dg~~~~---~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~---------~~~g~~~  249 (435)
T PRK05137        182 KRLAIMDQDGANVR---YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG---------NFPGMTF  249 (435)
T ss_pred             eEEEEECCCCCCcE---EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee---------cCCCccc
Confidence            37888888665543   56677888999999999999988764   468999999877542211         1123566


Q ss_pred             EEeeCCCCCeEEEe-eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeecccee
Q psy988          122 GIEPMPGEDKILVT-SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYA  195 (408)
Q Consensus       122 ~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~  195 (408)
                      ...|+|+|+.|+.. +.++  .|++||+.+++... +..+..  ......|+|||+.|+..+. +|  .|+++|+..+..
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            78999999988654 4444  47888988776533 333222  2445789999999887764 33  577777643211


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---CC
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---DS  272 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~  272 (408)
                      .             .+......                                   +....|+|+|+.|+....   +.
T Consensus       327 ~-------------~lt~~~~~-----------------------------------~~~~~~SpdG~~ia~~~~~~~~~  358 (435)
T PRK05137        327 R-------------RISFGGGR-----------------------------------YSTPVWSPRGDLIAFTKQGGGQF  358 (435)
T ss_pred             E-------------EeecCCCc-----------------------------------ccCeEECCCCCEEEEEEcCCCce
Confidence            1             01111111                                   223445556665655432   24


Q ss_pred             eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC------ceEEEeeccccCccccccccCccccceeeee
Q psy988          273 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  346 (408)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  346 (408)
                      .|.+||+..+.. ..+.. ..  .+..+.|+|||++|+..+.+      ..++++++..+.             ...+. 
T Consensus       359 ~i~~~d~~~~~~-~~lt~-~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-------------~~~l~-  420 (435)
T PRK05137        359 SIGVMKPDGSGE-RILTS-GF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-------------EREVP-  420 (435)
T ss_pred             EEEEEECCCCce-EeccC-CC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-------------eEEcc-
Confidence            688888765543 33322 11  34568999999998765432      257777776541             12222 


Q ss_pred             eccceEEEEecC
Q psy988          347 HNAVVTCAVFAP  358 (408)
Q Consensus       347 h~~~v~~~~~~~  358 (408)
                      ..+.+...+|+|
T Consensus       421 ~~~~~~~p~Wsp  432 (435)
T PRK05137        421 TPGDASDPAWSP  432 (435)
T ss_pred             CCCCccCcccCC
Confidence            234467778887

>KOG1272|consensus

Probab=99.71  E-value=5.1e-17  Score=130.97  Aligned_cols=232  Identities=13%  Similarity=0.163  Sum_probs=175.6

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      .....+.++.+|++|+.|+..|.+..+|..+.+....+....         .|.++.|..+..+++++-. ..++|||-.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E---------tv~Dv~~LHneq~~AVAQK-~y~yvYD~~  199 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME---------TVRDVTFLHNEQFFAVAQK-KYVYVYDNN  199 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh---------hhhhhhhhcchHHHHhhhh-ceEEEecCC
Confidence            345778899999999999999999999999998877766544         7889999988877777754 689999964


Q ss_pred             CcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          148 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                       |..+..++.+..   +..+.|-|-.-.|++++..|.++.-|+.+++.            +..+....+.+.        
T Consensus       200 -GtElHClk~~~~---v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl------------Va~~~t~~G~~~--------  255 (545)
T KOG1272|consen  200 -GTELHCLKRHIR---VARLEFLPYHFLLVAASEAGFLKYQDVSTGKL------------VASIRTGAGRTD--------  255 (545)
T ss_pred             -CcEEeehhhcCc---hhhhcccchhheeeecccCCceEEEeechhhh------------hHHHHccCCccc--------
Confidence             555566655443   66789999988899999999999999976532            233333333333        


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  307 (408)
                                                 .++-.|-+..+-+|...|+|.+|.....+++..+..|..  +|.++++.++|+
T Consensus       256 ---------------------------vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g--~V~siAv~~~G~  306 (545)
T KOG1272|consen  256 ---------------------------VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG--PVSSIAVDRGGR  306 (545)
T ss_pred             ---------------------------hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC--CcceEEECCCCc
Confidence                                       344445555677899999999999999998888877766  889999999999


Q ss_pred             EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe
Q psy988          308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV  387 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  387 (408)
                      |+|+.+.|..++|||++.-.            .+.++.. .-+...+++|.                .| +||. +....
T Consensus       307 YMaTtG~Dr~~kIWDlR~~~------------ql~t~~t-p~~a~~ls~Sq----------------kg-lLA~-~~G~~  355 (545)
T KOG1272|consen  307 YMATTGLDRKVKIWDLRNFY------------QLHTYRT-PHPASNLSLSQ----------------KG-LLAL-SYGDH  355 (545)
T ss_pred             EEeecccccceeEeeecccc------------ccceeec-CCCcccccccc----------------cc-ceee-ecCCe
Confidence            99999999999999998752            2222222 24567888986                44 4443 44557


Q ss_pred             EEEEeC
Q psy988          388 IRVFLN  393 (408)
Q Consensus       388 v~iw~~  393 (408)
                      |.||.-
T Consensus       356 v~iw~d  361 (545)
T KOG1272|consen  356 VQIWKD  361 (545)
T ss_pred             eeeehh
Confidence            999963

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.71  E-value=6.1e-13  Score=112.39  Aligned_cols=285  Identities=15%  Similarity=0.212  Sum_probs=174.6

Q ss_pred             EEEEeCC----CcEEEEec--CCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----CCEEEEEeccCC-eeeEEEE
Q psy988           38 FLSGSLD----GKLRLWNI--PDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----DGRCIFYTTDQL-KYHTQIH  106 (408)
Q Consensus        38 l~t~~~d----g~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~-~~~~~~~  106 (408)
                      ++.|+..    +.|.+|++  +++++...... ........++++|++++|++...    +|.|..|++... .......
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4555555    68999988  44544433332 23345677889999999999877    479999998875 2222222


Q ss_pred             EeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccC-ccccee---ecC--------ccccccceEEEEecCC
Q psy988          107 VRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRD-LNLSCK---YKG--------YVNVSSQIKASFSHDG  173 (408)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~  173 (408)
                      ....     .......++++|++++|+++. .+|.|.++++.. +.....   +..        ......+.++.++|++
T Consensus        81 ~~~~-----~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg  155 (345)
T PF10282_consen   81 SVPS-----GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG  155 (345)
T ss_dssp             EEEE-----SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred             eecc-----CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence            1111     224567899999999999985 589999999986 332222   110        0122335678999999


Q ss_pred             CEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          174 KYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       174 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      +++++... ...|++|++.........                  ...+.                        ...+..
T Consensus       156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~------------------~~~~~------------------------~~~G~G  193 (345)
T PF10282_consen  156 RFVYVPDLGADRVYVYDIDDDTGKLTP------------------VDSIK------------------------VPPGSG  193 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE-TTS-TEEE------------------EEEEE------------------------CSTTSS
T ss_pred             CEEEEEecCCCEEEEEEEeCCCceEEE------------------eeccc------------------------cccCCC
Confidence            99887643 347999988653211100                  00111                        133445


Q ss_pred             eeeeccCCCCCeEEEe-cCCCeEEEEEcC--CCee--eeEEeec----cceeceeEEEEcCCCCEEEEec-CCceEEEee
Q psy988          253 ISGIEPMPGEDKILVT-SNDSRIRLYDLR--DLNL--SCKYKGY----VNVSSQIKASFSHDGKYIVSGS-ENQCIYIWK  322 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~  322 (408)
                      .+.+.|+|+++++++. ..+++|.+|++.  +++.  .......    ........++++|||++|+++. ..+.|.+|+
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence            6677777777776554 567889999988  4432  2222211    1112456899999999988765 467899999


Q ss_pred             ccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCC
Q psy988          323 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNK  394 (408)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~  394 (408)
                      ++......        ..+..+......-+.++++|                +|++|+++. .++.|.+|++.
T Consensus       274 ~d~~~g~l--------~~~~~~~~~G~~Pr~~~~s~----------------~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  274 LDPATGTL--------TLVQTVPTGGKFPRHFAFSP----------------DGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             ECTTTTTE--------EEEEEEEESSSSEEEEEE-T----------------TSSEEEEEETTTTEEEEEEEE
T ss_pred             EecCCCce--------EEEEEEeCCCCCccEEEEeC----------------CCCEEEEEecCCCeEEEEEEe
Confidence            95421111        22333333334478999999                888888776 46789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394|consensus

Probab=99.71  E-value=6.2e-16  Score=127.10  Aligned_cols=165  Identities=22%  Similarity=0.332  Sum_probs=116.6

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE--EecCCCEEEEEecCCEEEEEeccC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN--FCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      .+..|+|+.|-|-+...++.+-.+|.+++||..--.            ..+...  ..+++..+......+.      .+
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------------~~t~p~~~~~k~~~~f~i~t~ksk------~~  279 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------------GATAPSYQALKDGDQFAILTSKSK------KT  279 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccc------------cCCCCcccccCCCCeeEEeeeecc------cc
Confidence            457899999999556666677778999999862111            111111  1234444443321110      00


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .........        ..+.|...+|+|||++|++.+.||.+||||..+.+++..++.....  .+|++|+|||++|++
T Consensus       280 rNPv~~w~~--------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG--LLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  280 RNPVARWHI--------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG--LLCVCWSPDGKYIVT  349 (636)
T ss_pred             CCccceeEe--------ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc--eEEEEEcCCccEEEe
Confidence            011111111        1247899999999999999999999999999998887777665544  889999999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      |++|--|.||.+..            ...+..-.+|+..|..++|.|
T Consensus       350 GGEDDLVtVwSf~e------------rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEE------------RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCcceEEEEEecc------------ceEEEeccccccceeeEeecc
Confidence            99999999999864            344455689999999999998

>KOG2315|consensus

Probab=99.70  E-value=6.9e-14  Score=115.97  Aligned_cols=331  Identities=14%  Similarity=0.154  Sum_probs=205.0

Q ss_pred             EEEEeccCC-eeEeEEEe---CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            5 VRLWHISRK-ECLCCFQH---IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         5 i~vwd~~~~-~~~~~~~h---~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      +.+|+.-.. .....+.+   ..+++..++|+ +|+++|.+ .+..++|++........  ....  ..+.++.|+|.|.
T Consensus        13 ~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~-~G~lfA~~-~~~~v~i~~~~~~~~~l--t~~~--~~~~~L~fSP~g~   86 (566)
T KOG2315|consen   13 FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSN-NGRLFAYS-DNQVVKVFEIATLKVVL--CVEL--KKTYDLLFSPKGN   86 (566)
T ss_pred             eEEeccCCccccccccccCCCCCcceeEEEcC-CCcEEEEE-cCCeEEEEEccCCcEEE--Eecc--ceeeeeeeccccc
Confidence            556665442 23333444   45577889999 88877666 46889999998886332  2221  2689999999999


Q ss_pred             EEEEE-----ec-----CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           81 FAVVG-----SY-----DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        81 ~l~~~-----~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +|.+-     ..     ...+.+|++++......+.....        .-.+..|++|..+.+-- ..+.+.+|++...+
T Consensus        87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--------~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~  157 (566)
T KOG2315|consen   87 YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--------NGWVPQFSIDESLAARL-VSNEVQFYDLGSFK  157 (566)
T ss_pred             ccccccccccccCCCCCCCceeeeeeccceehhheehhhh--------cCcccccccchhhhhhh-hcceEEEEecCCcc
Confidence            98762     11     24577999988544333322111        11467888876543332 34689999987743


Q ss_pred             cceeecCccccccceEEEEecCC--CEEEE-----eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDG--KYIVS-----GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      .+..   ..+...+..+.++|.+  ..+++     .+.-+.+++|.......         ...+..-.-....-..+.|
T Consensus       158 ~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~---------~~~~a~ksFFkadkvqm~W  225 (566)
T KOG2315|consen  158 TIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ---------HQPVANKSFFKADKVQMKW  225 (566)
T ss_pred             ceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc---------cchhhhccccccceeEEEe
Confidence            2221   1222346667888863  23332     24456899998752111         0111111111223345677


Q ss_pred             eCCcceeeee--cCCCC----------------CCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCe
Q psy988          224 APCPELIIAQ--MEPDK----------------SESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLN  283 (408)
Q Consensus       224 ~~~~~~~~~~--~~~~~----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~  283 (408)
                      ++-|.-|++-  .+-+.                ......+.-...++|.++.|+|+++.+++  |-.-.++.|||++ +.
T Consensus       226 N~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~  304 (566)
T KOG2315|consen  226 NKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GK  304 (566)
T ss_pred             ccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CC
Confidence            7776655432  11111                11112222234689999999999988876  4567889999987 56


Q ss_pred             eeeEEeeccceeceeEEEEcCCCCEEEEecC---CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCc
Q psy988          284 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  360 (408)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  360 (408)
                      ++..+...    +-.++-|+|.|++|+.++-   .|.+.|||+.+.            +++..+....  -+-+.|+|  
T Consensus       305 ~v~df~eg----pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~------------K~i~~~~a~~--tt~~eW~P--  364 (566)
T KOG2315|consen  305 PVFDFPEG----PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR------------KLIAKFKAAN--TTVFEWSP--  364 (566)
T ss_pred             EeEeCCCC----CccceEECCCCCEEEEeecCCCCCceEEEeccch------------hhccccccCC--ceEEEEcC--
Confidence            66555432    4457899999999987654   589999999875            5555555433  35689999  


Q ss_pred             hhhhhccCCCCCCCcccEEEEEec------CCeEEEEeCCCCC
Q psy988          361 ELIIAQMEPDKSESTGYVLVSADF------NGVIRVFLNKTKP  397 (408)
Q Consensus       361 ~~~~~~~~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~~  397 (408)
                                    ||++++|+..      |+.++||+.....
T Consensus       365 --------------dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  365 --------------DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             --------------CCcEEEEEeccccEEecCCeEEEEecCce
Confidence                          8888888764      7889999987543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.69  E-value=8.5e-13  Score=108.41  Aligned_cols=272  Identities=10%  Similarity=0.030  Sum_probs=160.6

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC----------CCcEEEEecCCCCceeeeeecCC-----
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL----------DGKLRLWNIPDKKVAVWNEVEGQ-----   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~-----   66 (408)
                      .++|.|.|..+++.+..+.-...-..+ +|| |++.|+.+..          +..|.+||..+.+......+...     
T Consensus        26 ~~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             CceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            478999999999999988733333445 999 7777766654          78999999999887632222211     


Q ss_pred             ceeeEEEEEecCCCEEEEEe-c-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988           67 TKLITAANFCENGKFAVVGS-Y-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  144 (408)
                      ......++++|||++|+... . +..+.+.|+.+.+.........         ...-...++ ...+ +-+.||.....
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---------~~~vy~t~e-~~~~-~~~~Dg~~~~v  172 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---------CYHIFPTAN-DTFF-MHCRDGSLAKV  172 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---------CcEEEEecC-CccE-EEeecCceEEE
Confidence            12334788999999999876 3 6899999999998877665421         111111111 1111 22234443333


Q ss_pred             EccCcccce--e---ecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988          145 DLRDLNLSC--K---YKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  218 (408)
Q Consensus       145 d~~~~~~~~--~---~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (408)
                      .+.+.....  .   +......... .-.|.+ +|+++++..+ |.|++.|+........       ..+..+...   .
T Consensus       173 ~~d~~g~~~~~~~~vf~~~~~~v~~-rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-------~~~~~~~~~---~  240 (352)
T TIGR02658       173 GYGTKGNPKIKPTEVFHPEDEYLIN-HPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-------PAIEAFTEA---E  240 (352)
T ss_pred             EecCCCceEEeeeeeecCCcccccc-CCceEcCCCcEEEEecC-CeEEEEecCCCcceec-------ceeeecccc---c
Confidence            222211111  0   1110000000 013455 8888877766 9999999754322111       000000000   0


Q ss_pred             EEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec----------CCCeEEEEEcCCCeeeeEE
Q psy988          219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDLNLSCKY  288 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~  288 (408)
                      ..-.|.|.                         .+.-++++|+++.+++..          ..+.|.++|..+++.+..+
T Consensus       241 ~~~~wrP~-------------------------g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i  295 (352)
T TIGR02658       241 KADGWRPG-------------------------GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI  295 (352)
T ss_pred             cccccCCC-------------------------cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence            00011111                         112256666666666632          2258999999999999888


Q ss_pred             eeccceeceeEEEEcCCCC-EEEEec-CCceEEEeecccc
Q psy988          289 KGYVNVSSQIKASFSHDGK-YIVSGS-ENQCIYIWKTHHD  326 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~  326 (408)
                      ....   .+..++++||++ +|++.+ .++.|.++|..++
T Consensus       296 ~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       296 ELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             eCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            7532   566899999999 887666 5788999999886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354|consensus

Probab=99.69  E-value=9e-15  Score=113.84  Aligned_cols=274  Identities=15%  Similarity=0.197  Sum_probs=172.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---ceeeeeecCCc------------eeeEEEEEecCCC--EE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK---VAVWNEVEGQT------------KLITAANFCENGK--FA   82 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~------------~~v~~~~~~~~~~--~l   82 (408)
                      ...+-|.++.|.. .|.+||||..+|.|.++.-....   ......++.|.            ..|..+.|.++++  .+
T Consensus        23 teadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   23 TEADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             chhcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            3567799999999 99999999999999999754322   22223444443            4588899988654  56


Q ss_pred             EEEecCCEEEEEeccCCeeeE---------------EEEEe-------------eccccccCCCCeEEEeeCCCCCeEEE
Q psy988           83 VVGSYDGRCIFYTTDQLKYHT---------------QIHVR-------------STRGKNATGRKISGIEPMPGEDKILV  134 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~---------------~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~  134 (408)
                      +..+.|.+|++|.+.......               .+..+             ...-..+|...|.++.++.|...+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            677789999999886543221               01111             11123567788999999999988888


Q ss_pred             eeCCCeEEEEEccCcccceee---cCcc---ccccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCcc
Q psy988          135 TSNDSRIRLYDLRDLNLSCKY---KGYV---NVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  207 (408)
Q Consensus       135 ~~~dg~i~i~d~~~~~~~~~~---~~~~---~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (408)
                      +. |=.|.+|+++--.....+   +.+.   -..-+++..|+|. .+.++..+..|+|++-|++....-..     ..  
T Consensus       182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~-----hs--  253 (433)
T KOG1354|consen  182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA-----HS--  253 (433)
T ss_pred             cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc-----hh--
Confidence            75 467999988643322211   1111   1122556788884 46677888899999999974211000     00  


Q ss_pred             ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEc-CCCeeee
Q psy988          208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-RDLNLSC  286 (408)
Q Consensus       208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  286 (408)
                       +.+....        .|..               ...+...-..|..+.|+++|+++++-.. -+|++||+ ...+++.
T Consensus       254 -KlfEepe--------dp~~---------------rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~  308 (433)
T KOG1354|consen  254 -KLFEEPE--------DPSS---------------RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE  308 (433)
T ss_pred             -hhhcccc--------CCcc---------------hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce
Confidence             0000000        0000               0111122345666777777777776332 57999999 4556666


Q ss_pred             EEeeccce-------------eceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          287 KYKGYVNV-------------SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       287 ~~~~~~~~-------------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +++.|...             ..-..++|+.++.++++|+..+.+++++...+.
T Consensus       309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            66655321             112357999999999999999999999966554

>KOG0974|consensus

Probab=99.69  E-value=1.8e-13  Score=121.65  Aligned_cols=177  Identities=14%  Similarity=0.200  Sum_probs=144.6

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEE-----EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTA-----ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~-----~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      ++.+.+||...+.....+++.....-     +-+++ +.-++++|+.-+.|.+|+....+..  ..+.+|.+.|.++.|+
T Consensus       108 ~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p--~~l~GHeG~iF~i~~s  184 (967)
T KOG0974|consen  108 RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKP--IRLKGHEGSIFSIVTS  184 (967)
T ss_pred             CceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCc--ceecccCCceEEEEEc
Confidence            56788888888888777776654432     34567 7788999999999999999844433  3689999999999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      .||.++++.|.|.++++|++++.+...       ....+|...+..+.|+|+  .++++++|-+.++|+.+. ..+..+.
T Consensus       185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~  254 (967)
T KOG0974|consen  185 LDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYD  254 (967)
T ss_pred             cCCcEEEEEecCcceeeeecccccccC-------cccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhh
Confidence            999999999999999999999876543       233567889999999987  999999999999997654 4444677


Q ss_pred             CccccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          157 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      .|.. ..+..++..++...+++++.|+.+++|++..
T Consensus       255 ~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  255 EHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            7665 3477788999999999999999999999854

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=7.6e-15  Score=112.13  Aligned_cols=115  Identities=17%  Similarity=0.273  Sum_probs=82.1

Q ss_pred             eeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC---CceEEEeecccc
Q psy988          252 KISGIEPMPGEDKILV--TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHHD  326 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~  326 (408)
                      +|.+++|+|+|+.|++  |..+..|.+||++ ++.+..+..    ..+..+.|||+|++|++++.   .|.|.+||.++.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3555555555555544  4567899999997 566666543    25567999999999998764   467999999864


Q ss_pred             CccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec------CCeEEEEeCCCCCCcc
Q psy988          327 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF------NGVIRVFLNKTKPKHS  400 (408)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~~~~~  400 (408)
                                  +.+.... | ..++.++|+|                ||++|+++..      |..++||+.. |+...
T Consensus       136 ------------~~i~~~~-~-~~~t~~~WsP----------------dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  136 ------------KKISTFE-H-SDATDVEWSP----------------DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             ------------EEeeccc-c-CcEEEEEEcC----------------CCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence                        3343332 3 3478999999                8999988864      7899999986 44444


Q ss_pred             cc
Q psy988          401 SL  402 (408)
Q Consensus       401 ~~  402 (408)
                      ..
T Consensus       185 ~~  186 (194)
T PF08662_consen  185 KK  186 (194)
T ss_pred             ec
Confidence            43

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.67  E-value=1.4e-12  Score=107.09  Aligned_cols=278  Identities=10%  Similarity=0.019  Sum_probs=170.0

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----------CCEEEEEeccCCeeeEEEEEeeccccc
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----------DGRCIFYTTDQLKYHTQIHVRSTRGKN  114 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~  114 (408)
                      ++|.+.|..+++.+  ..+..-..+ ..+ ++|||+.|+++..          +..|.+||..+.+....+........ 
T Consensus        27 ~~v~ViD~~~~~v~--g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~-  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVL--GMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF-  101 (352)
T ss_pred             ceEEEEECCCCEEE--EEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-
Confidence            89999999998766  344332222 234 9999999888766          68999999999998877765432110 


Q ss_pred             cCCCCeEEEeeCCCCCeEEEee-C-CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          115 ATGRKISGIEPMPGEDKILVTS-N-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      ........++++|+|++|++.. . +..|.+.|+.+++.+..+.-...   ..-...+++..  .+.+.||......+..
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~--~~~~~Dg~~~~v~~d~  176 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTF--FMHCRDGSLAKVGYGT  176 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCcc--EEEeecCceEEEEecC
Confidence            1123445789999999999875 3 78999999999998877654221   11111222221  2223455544443332


Q ss_pred             ceeeeeecccCCCccccccccccceEEEE-EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecC
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCA-VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSN  270 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  270 (408)
                      ....                    ..... .|.++...+                  ...+    .+.+ +|+++.+..+
T Consensus       177 ~g~~--------------------~~~~~~vf~~~~~~v------------------~~rP----~~~~~dg~~~~vs~e  214 (352)
T TIGR02658       177 KGNP--------------------KIKPTEVFHPEDEYL------------------INHP----AYSNKSGRLVWPTYT  214 (352)
T ss_pred             CCce--------------------EEeeeeeecCCcccc------------------ccCC----ceEcCCCcEEEEecC
Confidence            1110                    00110 111111111                  0011    3344 6777777666


Q ss_pred             CCeEEEEEcCCC-----eeeeEEeec-----cceeceeEEEEcCCCCEEEEec----------CCceEEEeeccccCccc
Q psy988          271 DSRIRLYDLRDL-----NLSCKYKGY-----VNVSSQIKASFSHDGKYIVSGS----------ENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       271 d~~i~i~d~~~~-----~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~  330 (408)
                       |+|.+.|+...     +....+...     -.+....-++++|+++.+++..          ..+.|.++|..+.    
T Consensus       215 -G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----  289 (352)
T TIGR02658       215 -GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----  289 (352)
T ss_pred             -CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----
Confidence             99999996443     222222111     1122233489999999888743          2247999998876    


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCeEEEEeCCCCCCcccc-cc
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGVIRVFLNKTKPKHSSL-PV  404 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~~~~~~~~~~-~~  404 (408)
                              +.+..+. -...+..++++|                |++ +|.+.. .++.|.+.|..+++....+ ++
T Consensus       290 --------kvi~~i~-vG~~~~~iavS~----------------Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v  341 (352)
T TIGR02658       290 --------KRLRKIE-LGHEIDSINVSQ----------------DAKPLLYALSTGDKTLYIFDAETGKELSSVNQL  341 (352)
T ss_pred             --------eEEEEEe-CCCceeeEEECC----------------CCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence                    4444444 245789999999                888 776555 6889999999999887776 44

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315|consensus

Probab=99.67  E-value=1.9e-13  Score=113.41  Aligned_cols=293  Identities=14%  Similarity=0.229  Sum_probs=189.9

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-----eC-----CCcEEEEecCCCCceeeeeecCCceeeE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-----SL-----DGKLRLWNIPDKKVAVWNEVEGQTKLIT   71 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-----~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~v~   71 (408)
                      +..++|++..+++.+.+..-. .++++.|+| .+.+|.|=     ..     .-.+.+|+++++....  .+......-.
T Consensus        54 ~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s--~~q~k~Q~~W  129 (566)
T KOG2315|consen   54 NQVVKVFEIATLKVVLCVELK-KTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS--QIQKKMQNGW  129 (566)
T ss_pred             CCeEEEEEccCCcEEEEeccc-eeeeeeecc-cccccccccccccccCCCCCCCceeeeeeccceehh--heehhhhcCc
Confidence            456888888888655555444 899999999 89988762     11     2457799999854332  2222112225


Q ss_pred             EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC--eEEE-----eeCCCeEEEE
Q psy988           72 AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED--KILV-----TSNDSRIRLY  144 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~i~  144 (408)
                      +..|+.|..+. +--..+.+.+|+....+.....         -|...+..+.++|.+.  .+++     .+.-+.+++|
T Consensus       130 ~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~k---------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~  199 (566)
T KOG2315|consen  130 VPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQHK---------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY  199 (566)
T ss_pred             ccccccchhhh-hhhhcceEEEEecCCccceeee---------eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence            88899887643 3334578999999874433221         1235788899998633  3332     2455689999


Q ss_pred             EccCccccee--ecCccccccceEEEEecCCCEEE---EeecC---------ceEEEeeeccceeeeeecccCCCccccc
Q psy988          145 DLRDLNLSCK--YKGYVNVSSQIKASFSHDGKYIV---SGSEN---------QCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       145 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      .......-..  .+...... -..+.|++-|.-|+   +..-|         .++++++++....             ..
T Consensus       200 ~~~~~~~~~~~a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~-------------~V  265 (566)
T KOG2315|consen  200 KYPEEGQHQPVANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV-------------SV  265 (566)
T ss_pred             ccccccccchhhhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE-------------EE
Confidence            8763222111  11111111 22477887765432   22223         3677777762211             11


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCC------CCCceeeecCCCceeeeeccCCCCCeEEEecCC---CeEEEEEcCC
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDK------SESTGYVLNATGRKISGIEPMPGEDKILVTSND---SRIRLYDLRD  281 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~  281 (408)
                      -....++|.++.|+|+++.+++.+.-..      ......++....++-.++-|+|.|++++.++.+   |.|.+||..+
T Consensus       266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            1234789999999999998877654433      233334455566777889999999999987654   8999999999


Q ss_pred             CeeeeEEeeccceeceeEEEEcCCCCEEEEecC------CceEEEeecccc
Q psy988          282 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE------NQCIYIWKTHHD  326 (408)
Q Consensus       282 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~  326 (408)
                      .+++..+....    .+-+.|+|||++++++..      |+.++||+....
T Consensus       346 ~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  346 RKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             hhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            88888876532    235699999999998764      788999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.9e-13  Score=118.71  Aligned_cols=121  Identities=13%  Similarity=0.135  Sum_probs=80.2

Q ss_pred             cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec---CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           46 KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY---DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        46 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      .|.+||.+.....   .+..+...+...+|+|||+.|+..+.   +..+.+|++.+++.....   ..      .+....
T Consensus       180 ~l~~~d~dg~~~~---~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~---~~------~~~~~~  247 (429)
T PRK03629        180 ELRVSDYDGYNQF---VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SF------PRHNGA  247 (429)
T ss_pred             eEEEEcCCCCCCE---EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---CC------CCCcCC
Confidence            6899998876554   34456678999999999999987653   357999999876532211   11      123446


Q ss_pred             EeeCCCCCeEEEe-eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec
Q psy988          123 IEPMPGEDKILVT-SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       123 ~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      ..|+|||+.|+.. ..+|  .|++||+.+++........   ..+....|+|||+.|+..+.
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~---~~~~~~~wSPDG~~I~f~s~  306 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAYTSD  306 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC---CCcCceEECCCCCEEEEEeC
Confidence            7999999988875 3344  5888888776544332221   12445677888877766553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=8.2e-14  Score=122.11  Aligned_cols=174  Identities=11%  Similarity=0.046  Sum_probs=117.3

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.++|.+.+.......+...+....|+| +|+.|+..+.+   ..|.+|++.+++...   +....+.+....|+|||+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECCCCC
Confidence            47788888777666667888999999999 89888876643   368999998887653   232333455789999999


Q ss_pred             EEEE-EecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C--CeEEEEEccCccccee
Q psy988           81 FAVV-GSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D--SRIRLYDLRDLNLSCK  154 (408)
Q Consensus        81 ~l~~-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~  154 (408)
                      .|+. .+.+|  .|.+||+.+++... +.        .+........|+|+++.++..+. +  ..|+++|+.+++....
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l  326 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSR-VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV  326 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEE-cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            8874 44454  68888988765321 11        11123456789999998877654 3  3577788877764332


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecC-c--eEEEeeeccc
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSEN-Q--CIYIWKTHHD  193 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~  193 (408)
                      ... .  .......|+|+|++|+....+ +  .|.++|+.++
T Consensus       327 t~~-~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        327 TFV-G--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             ecC-C--CCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            211 1  112346899999998877643 3  4777887653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=2.4e-14  Score=109.34  Aligned_cols=150  Identities=17%  Similarity=0.335  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCEEEEEeC----------CCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEEEE--ecCCEEE
Q psy988           26 TAICFHPRDDRYFLSGSL----------DGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAVVG--SYDGRCI   92 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~dg~i~   92 (408)
                      ..+.|+| .|++|+.-..          -+...+|.++...... ..+. ...++|.+++|+|+|+.|++.  ..++.+.
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~-~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPV-ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcc-ceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            3578899 7777665432          1445666664332221 2232 234569999999999987655  3567999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCcccceeecCccccccceEEEE
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF  169 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  169 (408)
                      +||++. +....+.          ...+..+.|+|+|+++++++.   .|.|.+||.++.+.+......    .+..++|
T Consensus        87 lyd~~~-~~i~~~~----------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~W  151 (194)
T PF08662_consen   87 LYDVKG-KKIFSFG----------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEW  151 (194)
T ss_pred             EEcCcc-cEeEeec----------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEE
Confidence            999962 2222211          246788999999999999864   477999999987777655432    2567999


Q ss_pred             ecCCCEEEEeec------CceEEEeeecc
Q psy988          170 SHDGKYIVSGSE------NQCIYIWKTHH  192 (408)
Q Consensus       170 ~~~~~~l~~~~~------dg~i~i~d~~~  192 (408)
                      +|+|++|+++..      |..++||+...
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEecC
Confidence            999999998864      67889999853

>KOG1409|consensus

Probab=99.65  E-value=8.4e-14  Score=108.52  Aligned_cols=250  Identities=15%  Similarity=0.146  Sum_probs=165.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      +|.+.|++...-| ...-+++.+.|.+++||--.+ ++.-+ .....-+.+++++.+.++...|+.|-..|++.-+.+..
T Consensus        22 G~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se   99 (404)
T KOG1409|consen   22 GSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE   99 (404)
T ss_pred             Cchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence            3888999988888 777799999999999996543 33221 12233467899999999999999999999999887764


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .-...    ...+....|...+..+.|+.....+++.+.|..+.---.+.+..+..+.....   ...+.+.-.  +.+.
T Consensus       100 dfnkm----~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen  100 DFNKM----TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQFDAL--YAFV  170 (404)
T ss_pred             hhhhc----chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCceeeE--EEEe
Confidence            32211    11222345667899999998889999999988777655565554433221111   111111111  3444


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      |...|.|....+                                 -+.+-.            ....+.++...+++++|
T Consensus       171 Gd~~gqvt~lr~---------------------------------~~~~~~------------~i~~~~~h~~~~~~l~W  205 (404)
T KOG1409|consen  171 GDHSGQITMLKL---------------------------------EQNGCQ------------LITTFNGHTGEVTCLKW  205 (404)
T ss_pred             cccccceEEEEE---------------------------------eecCCc------------eEEEEcCcccceEEEEE
Confidence            444444444433                                 222211            12233455566666666


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCee-eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      .|..+.+.+|..|..+.+||+...+- ...+.+|.+  .+..++.-+.-+.+.+++.||.|.+|+.+...
T Consensus       206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             cCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            67777889999999999999875432 334445544  66677777778899999999999999987643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.65  E-value=1.7e-13  Score=112.43  Aligned_cols=333  Identities=12%  Similarity=0.102  Sum_probs=209.5

Q ss_pred             EEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE
Q psy988            7 LWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG   85 (408)
Q Consensus         7 vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   85 (408)
                      .|+..+...-..++ ..-++..++||| .|.+|++... ..|.+|........  ..+.  ...|..+.|+|++++|.+-
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP-~G~~l~~~~~-~~V~~~~g~~~~~l--~~~~--~~~V~~~~fSP~~kYL~tw   89 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESP-LGTYLFSEHA-AGVECWGGPSKAKL--VRFR--HPDVKYLDFSPNEKYLVTW   89 (561)
T ss_pred             eecCccccccccccccCcchhheeecC-cchheehhhc-cceEEccccchhhe--eeee--cCCceecccCcccceeeee
Confidence            35555555555565 667899999999 9999998766 45999998776633  2332  3458999999999999987


Q ss_pred             ecCC---------------EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           86 SYDG---------------RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        86 ~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +..+               .+.+||+.++.....+.......     ..-.-+.|+-++.+++-.. ...+.++++ +..
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-----~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n  162 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-----LGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDN  162 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-----cccceeeeeecchhhhhhc-cCeEEEEec-CCc
Confidence            6543               48999999988766554433220     0112467787777766553 357999997 433


Q ss_pred             cceeecCccccccceEEEEecCCC--EEEE-----eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDGK--YIVS-----GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ....-........+....++|.++  .|+.     ....+.+++|.+....            .+.+..-.+..-..+.|
T Consensus       163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s------------~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS------------VLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC------------eeeeeeeEeecccEEEE
Confidence            321111111234466788888643  2332     3456788888875321            11111112223346778


Q ss_pred             eCCcceeeeecCCCC-C------CCceee----------ecCCCceeeeeccCCCCCeEEEe--cCCCeEEEEEcCCCee
Q psy988          224 APCPELIIAQMEPDK-S------ESTGYV----------LNATGRKISGIEPMPGEDKILVT--SNDSRIRLYDLRDLNL  284 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~-~------~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~  284 (408)
                      .+.|.++++-..... .      ....++          .....++|...+|.|.++.+++.  -.+..+.++|++.. +
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l  309 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L  309 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence            888888765422211 0      011111          11346788999999998887765  47889999999865 4


Q ss_pred             eeEEeeccceeceeEEEEcCCCCEEEEecCC---ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCch
Q psy988          285 SCKYKGYVNVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  361 (408)
Q Consensus       285 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  361 (408)
                      ...+....    -..+.|+|.+++++.++-|   |.|.+||.....           .+...+.+  ...+-+.|+|   
T Consensus       310 ~~~~Pe~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf-----------~~~~~~~~--~n~s~~~wsp---  369 (561)
T COG5354         310 RFYFPEQK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF-----------KVAGAFNG--LNTSYCDWSP---  369 (561)
T ss_pred             EEecCCcc----cccccccCcccEEEEecCCccccceEEeccCCce-----------EEEEEeec--CCceEeeccC---
Confidence            44443322    2357899999999986654   789999987641           22223332  3345678999   


Q ss_pred             hhhhccCCCCCCCcccEEEEEe------cCCeEEEEeCCCCCC
Q psy988          362 LIIAQMEPDKSESTGYVLVSAD------FNGVIRVFLNKTKPK  398 (408)
Q Consensus       362 ~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iw~~~~~~~  398 (408)
                                   |++++.++.      .|..|+||++...+.
T Consensus       370 -------------d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         370 -------------DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             -------------CceEEEecCCCcccccCcceEEEEecCchh
Confidence                         666655542      388999999876553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.64  E-value=1.4e-12  Score=107.14  Aligned_cols=292  Identities=14%  Similarity=0.190  Sum_probs=192.5

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCC---------------cEEEEecCCCCceeeeeecCCce
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDG---------------KLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      -|.+|.-..+..+..+.|. .|..+.||| +++||.+=+..+               .+.+||+.++..+.  .+.....
T Consensus        54 ~V~~~~g~~~~~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~--sf~~~~q  129 (561)
T COG5354          54 GVECWGGPSKAKLVRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF--SFNGISQ  129 (561)
T ss_pred             ceEEccccchhheeeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEe--eccccCC
Confidence            4778887777766666675 599999999 999999976543               49999999998774  4444333


Q ss_pred             e--eE-EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC--eEEE-----eeCC
Q psy988           69 L--IT-AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED--KILV-----TSND  138 (408)
Q Consensus        69 ~--v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d  138 (408)
                      +  .. -+.|+-+.+++|-. ....+.|+++ +.... ......     .....+....|+|.++  .|+.     .+..
T Consensus       130 ~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~-----lr~~gi~dFsisP~~n~~~la~~tPEk~~kp  201 (561)
T COG5354         130 PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKN-----LRPVGILDFSISPEGNHDELAYWTPEKLNKP  201 (561)
T ss_pred             cccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhh-----ccccceeeEEecCCCCCceEEEEccccCCCC
Confidence            3  44 67888888877655 3457999997 32211 111111     1124688888988643  3443     2557


Q ss_pred             CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-----------CceEEEeeeccceeeeeecccCCCcc
Q psy988          139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-----------NQCIYIWKTHHDYAKFSSVRRDRNDF  207 (408)
Q Consensus       139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (408)
                      +.+++|.+..+..+.......  ..-..+.|.+.|++|++--.           ...+++++++..             -
T Consensus       202 a~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-------------~  266 (561)
T COG5354         202 AMVRILSIPKNSVLVTKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-------------S  266 (561)
T ss_pred             cEEEEEEccCCCeeeeeeeEe--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-------------c
Confidence            889999998666554432221  12335889999988765321           245777777521             1


Q ss_pred             ccccccccceEEEEEEeCCcceeeeecCCCC------CCCceeeecCCCceeeeeccCCCCCeEEEecCC---CeEEEEE
Q psy988          208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------SESTGYVLNATGRKISGIEPMPGEDKILVTSND---SRIRLYD  278 (408)
Q Consensus       208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d  278 (408)
                      +.......++|...+|.|.++.+++......      .......+......-..+.|+|.++++++++-|   |.+.+||
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~  346 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFD  346 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEec
Confidence            1112245788999999999988876542211      222224455556666788999999999997655   7899999


Q ss_pred             cCCCeeee-EEeeccceeceeEEEEcCCCCEEEEec------CCceEEEeecccc
Q psy988          279 LRDLNLSC-KYKGYVNVSSQIKASFSHDGKYIVSGS------ENQCIYIWKTHHD  326 (408)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iw~~~~~  326 (408)
                      ........ .+.+.    ...-+.|+||++++.+..      .|..|.|||+...
T Consensus       347 ~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         347 PAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            87654433 45442    233568999999988753      4789999999764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.64  E-value=1.4e-13  Score=120.72  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=119.9

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.++|...........+...+.+.+|+| ++++|+.+..+   ..|++||+.+++..   .+..+...+.+++|+|||+
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~---~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE---KVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCC
Confidence            57888887666666666878899999999 99999887654   47999999888654   2334455567789999998


Q ss_pred             EEEE-EecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CC--eEEEEEccCccccee
Q psy988           81 FAVV-GSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DS--RIRLYDLRDLNLSCK  154 (408)
Q Consensus        81 ~l~~-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~  154 (408)
                      .|+. .+.++  .|.+|++.++......         .+........|+|+++.|+..+. .+  .|+++|+.+++.. .
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~  316 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLT---------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R  316 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECC---------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence            7764 44444  5888888776432111         11123445689999998887654 23  6888888766543 2


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCc---eEEEeeecc
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHH  192 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~  192 (408)
                      +....  .......|+|+|++++.+..++   .|.+||+.+
T Consensus       317 l~~~~--~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       317 LTFRG--GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             eecCC--CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            22221  2244678999999999887765   788888754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314|consensus

Probab=99.64  E-value=5.2e-13  Score=110.75  Aligned_cols=314  Identities=13%  Similarity=0.150  Sum_probs=199.8

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec-----------CCEEEE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY-----------DGRCIF   93 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i   93 (408)
                      =+-+.||| -|.||+|--.. -|.+|--.+-...  +.+ .|+ .|.-+.|||+.+||++-+.           ...++|
T Consensus       213 etyv~wSP-~GTYL~t~Hk~-GI~lWGG~~f~r~--~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSP-KGTYLVTFHKQ-GIALWGGESFDRI--QRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecC-CceEEEEEecc-ceeeecCccHHHH--Hhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            35689999 99999998764 4899975554332  222 344 4889999999999998653           257999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      ||+.++.....+.....     ....-.-..|+.|+++++.-.. ..|.||+..+..++..-.  .....+....|+|.+
T Consensus       287 WDI~tG~lkrsF~~~~~-----~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks--lki~gIr~FswsP~~  358 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKS-----PYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS--LKISGIRDFSWSPTS  358 (698)
T ss_pred             EEccccchhcceeccCC-----CccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc--cCCccccCcccCCCc
Confidence            99999987666554211     1112334689999999988776 579999987644332211  122346678899987


Q ss_pred             CEEEEeecC-----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC-c-----
Q psy988          174 KYIVSGSEN-----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES-T-----  242 (408)
Q Consensus       174 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~-----  242 (408)
                      +.||.=...     ..+-+..+            +....++....++-.=..+-|..+|.+|.+......... .     
T Consensus       359 ~llAYwtpe~~~~parvtL~ev------------Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n  426 (698)
T KOG2314|consen  359 NLLAYWTPETNNIPARVTLMEV------------PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN  426 (698)
T ss_pred             ceEEEEcccccCCcceEEEEec------------CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence            766643221     12233322            223333333344444456778888999887655443332 1     


Q ss_pred             eeee--cC---------CCceeeeeccCCCCCeEEEecC---CCeEEEEEcCC-C---eeeeEEeeccceeceeEEEEcC
Q psy988          243 GYVL--NA---------TGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRD-L---NLSCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       243 ~~~~--~~---------~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-~---~~~~~~~~~~~~~~v~~~~~s~  304 (408)
                      ..++  ..         ....|...+|-|.|..+++-+.   ..++.+|.+++ .   +++..+..    ...+.+.|+|
T Consensus       427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsP  502 (698)
T KOG2314|consen  427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSP  502 (698)
T ss_pred             EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcC
Confidence            1111  11         2345677889999998887533   36789998873 2   23333332    3456899999


Q ss_pred             CCCEEEEe---cCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          305 DGKYIVSG---SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       305 ~~~~l~~~---~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                      .|++++.+   |..|.+.++|..-.            .+...-.......+.+.|.|                .|++++|
T Consensus       503 kG~fvvva~l~s~~g~l~F~D~~~a------------~~k~~~~~eh~~at~veWDP----------------tGRYvvT  554 (698)
T KOG2314|consen  503 KGRFVVVAALVSRRGDLEFYDTDYA------------DLKDTASPEHFAATEVEWDP----------------TGRYVVT  554 (698)
T ss_pred             CCcEEEEEEecccccceEEEecchh------------hhhhccCccccccccceECC----------------CCCEEEE
Confidence            99998875   56789999998742            11111112223467899999                8999988


Q ss_pred             Eec------CCeEEEEeCCCC
Q psy988          382 ADF------NGVIRVFLNKTK  396 (408)
Q Consensus       382 ~~~------dg~v~iw~~~~~  396 (408)
                      ++.      |.--+||++...
T Consensus       555 ~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  555 SSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             eeehhhhccccceEEEEeecH
Confidence            875      556778887643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.7e-13  Score=119.44  Aligned_cols=173  Identities=13%  Similarity=0.071  Sum_probs=112.3

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC-C--cEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD-G--KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.++|.+.......+.+...+.+..|+| ||+.|+..+.+ +  .|.+||+.+++........   +......|+|||+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCC
Confidence            56777877766655566888999999999 89888876543 3  5888999887754333333   3345789999999


Q ss_pred             EEEE-EecCCE--EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C--CeEEEEEccCccccee
Q psy988           81 FAVV-GSYDGR--CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D--SRIRLYDLRDLNLSCK  154 (408)
Q Consensus        81 ~l~~-~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~  154 (408)
                      .|+. .+.+|.  |.++|+++++.....         .+........|+|+++.++..+. +  ..|+++|+.+++....
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L  345 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL  345 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence            8875 455664  777788766432111         11224566789999998877654 3  3577778877664332


Q ss_pred             ecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeecc
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHH  192 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~  192 (408)
                       ....  ......+|+|||++|+..+. ++  .|.++|+.+
T Consensus       346 -t~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        346 -TFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             -ecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence             2111  11234689999999887655 33  345556544

>KOG1354|consensus

Probab=99.63  E-value=7e-14  Score=108.98  Aligned_cols=264  Identities=20%  Similarity=0.312  Sum_probs=165.1

Q ss_pred             CceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEee-cccc---------ccCCCCeEEEeeCCCCC--eEE
Q psy988           66 QTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS-TRGK---------NATGRKISGIEPMPGED--KIL  133 (408)
Q Consensus        66 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~---------~~~~~~v~~~~~~~~~~--~l~  133 (408)
                      ...-|.++.|...|.+|++|..+|.|.++.-+..... ...... ...+         -.....|..+.|.++++  .++
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            3456899999999999999999999999976543321 111111 0000         11234688899988654  677


Q ss_pred             EeeCCCeEEEEEccCcccce--------------------ee--------------cCccccccceEEEEecCCCEEEEe
Q psy988          134 VTSNDSRIRLYDLRDLNLSC--------------------KY--------------KGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       134 ~~~~dg~i~i~d~~~~~~~~--------------------~~--------------~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      ..+.|.+|++|.+.......                    .+              -.+.+.-.+.++.++.|+..++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            78899999999886432211                    00              011233346678888898888887


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                       .|-.|.+|+++-....+..+                     ..-|..                  +..-..-|++..|+
T Consensus       183 -DdLRINLWnlei~d~sFnIV---------------------DIKP~n------------------mEeLteVITsaEFh  222 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIV---------------------DIKPAN------------------MEELTEVITSAEFH  222 (433)
T ss_pred             -cceeeeeccccccCCceeEE---------------------EccccC------------------HHHHHHHHhhhccC
Confidence             46789999986432222211                     111110                  00111234555566


Q ss_pred             CC-CCeEEEecCCCeEEEEEcCCCeee----eEEeecc----------ceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          260 PG-EDKILVTSNDSRIRLYDLRDLNLS----CKYKGYV----------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       260 ~~-~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      |. -..++-.+..|+|++-|++...+-    ..+....          --..|..+.|+++|+||++-+. -+|++||++
T Consensus       223 p~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  223 PHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             HhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence            54 345666788999999999843211    1111111          1135678999999999998653 589999997


Q ss_pred             ccCccccccccCccccceeeeeec------------cce---EEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEE
Q psy988          325 HDYAKFSSVRRDRNDFWEGIKAHN------------AVV---TCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR  389 (408)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~h~------------~~v---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  389 (408)
                      ...           +++.+.+-|.            ..|   ..++|+-                ++.+++||+....++
T Consensus       302 me~-----------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg----------------~~~~v~TGsy~n~fr  354 (433)
T KOG1354|consen  302 MEA-----------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG----------------NDSYVMTGSYNNVFR  354 (433)
T ss_pred             ccC-----------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC----------------CcceEecccccceEE
Confidence            643           3344444442            122   3477887                888999999999999


Q ss_pred             EEeCCCCCC
Q psy988          390 VFLNKTKPK  398 (408)
Q Consensus       390 iw~~~~~~~  398 (408)
                      ++++..+..
T Consensus       355 vf~~~~gsk  363 (433)
T KOG1354|consen  355 VFNLARGSK  363 (433)
T ss_pred             EecCCCCcc
Confidence            999766543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.63  E-value=4.2e-13  Score=117.63  Aligned_cols=213  Identities=16%  Similarity=0.149  Sum_probs=132.4

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                      ..|.++|......   +.+..+...+....|+|||++|+.++.+   ..|.+||+.+++......         +...+.
T Consensus       170 ~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---------~~~~~~  237 (417)
T TIGR02800       170 YELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---------FPGMNG  237 (417)
T ss_pred             ceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---------CCCCcc
Confidence            3588888765544   3455566678899999999999987654   479999998765322111         123456


Q ss_pred             EEeeCCCCCeEEEe-eCC--CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeecccee
Q psy988          122 GIEPMPGEDKILVT-SND--SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYA  195 (408)
Q Consensus       122 ~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~  195 (408)
                      ++.|+|+++.|+.. +.+  ..|++||+.++.... +..+..  ......|+|+|++|+..+. .+  .|+++|+.++..
T Consensus       238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            68999999988754 333  358899998765433 222221  1334689999998876654 33  466666543211


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC---
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS---  272 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---  272 (408)
                      .             .+.                                   ........+.|+|++++++.++.++   
T Consensus       315 ~-------------~l~-----------------------------------~~~~~~~~~~~spdg~~i~~~~~~~~~~  346 (417)
T TIGR02800       315 R-------------RLT-----------------------------------FRGGYNASPSWSPDGDLIAFVHREGGGF  346 (417)
T ss_pred             E-------------Eee-----------------------------------cCCCCccCeEECCCCCEEEEEEccCCce
Confidence            0             000                                   1111233455677777777766654   


Q ss_pred             eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc---eEEEeecc
Q psy988          273 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTH  324 (408)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~  324 (408)
                      .|.+||+.++... .+....   ......|+|||++|+..+.++   .+++.+..
T Consensus       347 ~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       347 NIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            7899998875543 222211   223568999999988776654   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974|consensus

Probab=99.63  E-value=4.1e-14  Score=125.53  Aligned_cols=283  Identities=14%  Similarity=0.126  Sum_probs=183.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee----eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEec
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV----WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT   96 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~   96 (408)
                      |-+++++..+-.   +||..|. --.|.+||+..+....    .+.+..|...-.-   .-.+.+++++..-+.+..=+.
T Consensus         6 ~~~~l~~~~~~~---~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~   78 (967)
T KOG0974|consen    6 SLGPLNLPQLVS---DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEA   78 (967)
T ss_pred             ccccccchhhcc---ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecch
Confidence            334455555532   4566554 3679999998876431    1233334000000   012234444443333332222


Q ss_pred             cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc--ceEEEEecCCC
Q psy988           97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS--QIKASFSHDGK  174 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  174 (408)
                      .....            ......+....+..+...++.++.++.+.+||...+..............  ..-+.++++.-
T Consensus        79 ~~~~~------------~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~  146 (967)
T KOG0974|consen   79 SNQII------------ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL  146 (967)
T ss_pred             hhhhh------------hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE
Confidence            11100            01112444455566778899999999999999988776655544332211  11234567777


Q ss_pred             EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988          175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS  254 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (408)
                      ++++|+.-+.|.+|+.......            ..+.                                   +|.+.|-
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p------------~~l~-----------------------------------GHeG~iF  179 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKP------------IRLK-----------------------------------GHEGSIF  179 (967)
T ss_pred             EEEeccccccEEEEeccccCCc------------ceec-----------------------------------ccCCceE
Confidence            8999999999999998521100            0233                                   4555555


Q ss_pred             eeccCCCCCeEEEecCCCeEEEEEcCCCeeee-EEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          255 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                      .+.++.||+++++.+.|.++|+|++.+.+... ..-+|  ...+..++|.|+  .++++++|.+.++|+.+.        
T Consensus       180 ~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH--saRvw~~~~~~n--~i~t~gedctcrvW~~~~--------  247 (967)
T KOG0974|consen  180 SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH--SARVWACCFLPN--RIITVGEDCTCRVWGVNG--------  247 (967)
T ss_pred             EEEEccCCcEEEEEecCcceeeeecccccccCcccccc--cceeEEEEeccc--eeEEeccceEEEEEeccc--------
Confidence            66666677788999999999999999988766 33344  448899999998  999999999999997765        


Q ss_pred             ccCccccceeeeeec-cceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          334 RRDRNDFWEGIKAHN-AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                           ..+..+.+|. ..|..++..+                +...++|++.||.+++|++.....+...
T Consensus       248 -----~~l~~y~~h~g~~iw~~~~~~----------------~~~~~vT~g~Ds~lk~~~l~~r~~e~~~  296 (967)
T KOG0974|consen  248 -----TQLEVYDEHSGKGIWKIAVPI----------------GVIIKVTGGNDSTLKLWDLNGRGLEGHV  296 (967)
T ss_pred             -----ceehhhhhhhhcceeEEEEcC----------------CceEEEeeccCcchhhhhhhccccccce
Confidence                 3455677776 5789999998                7889999999999999999876655443

>KOG2041|consensus

Probab=99.62  E-value=3.1e-13  Score=115.65  Aligned_cols=291  Identities=11%  Similarity=0.145  Sum_probs=193.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-------------ceeeeeecCCceeeEEEEEecCCCEEEEEec
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-------------VAVWNEVEGQTKLITAANFCENGKFAVVGSY   87 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   87 (408)
                      ......|++|+. ...++|+|+.||.+++-.+.+..             ...-+.+.+|...|.-+.|+.+.+.|-+...
T Consensus        13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            445678999999 88999999999999999886522             1122578899999999999999999999999


Q ss_pred             CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce-eecCccccccceE
Q psy988           88 DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIK  166 (408)
Q Consensus        88 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~  166 (408)
                      +|.|.+|-+-.+.......      .....+.|.+++|+.+|..+....+||.|.+=.++..+.-. .+++    .....
T Consensus        92 ~GlIiVWmlykgsW~EEMi------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~h  161 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMI------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLAH  161 (1189)
T ss_pred             CceEEEEeeecccHHHHHh------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----heccc
Confidence            9999999887665322211      11223579999999999999999999999887776433211 1222    12335


Q ss_pred             EEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE-EEEeCCcceeeeecCCCCCCCceee
Q psy988          167 ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC-AVFAPCPELIIAQMEPDKSESTGYV  245 (408)
Q Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
                      +.|++|.+.++.+-.+|.+.+||.+....             ..+... ..|+. -.++.-+..++..-+          
T Consensus       162 v~ws~D~~~~Lf~~ange~hlydnqgnF~-------------~Kl~~~-c~Vn~tg~~s~~~~kia~i~w----------  217 (1189)
T KOG2041|consen  162 VLWSEDLEQALFKKANGETHLYDNQGNFE-------------RKLEKD-CEVNGTGIFSNFPTKIAEIEW----------  217 (1189)
T ss_pred             eeecccHHHHHhhhcCCcEEEecccccHH-------------Hhhhhc-eEEeeeeeecCCCccccceee----------
Confidence            78999999999998999999999764321             111110 11111 112211111110000          


Q ss_pred             ecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc---------
Q psy988          246 LNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ---------  316 (408)
Q Consensus       246 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------  316 (408)
                      ..+     .-.-.-|+...|+++-..|.+.+..-.+......+...   ..+....|+++|..||+++.+.         
T Consensus       218 ~~g-----~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n  289 (1189)
T KOG2041|consen  218 NTG-----PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSN  289 (1189)
T ss_pred             ccC-----ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccc
Confidence            000     00112457888999999999998765554443344332   3677889999999999987643         


Q ss_pred             eEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      .|.+|..-.             ..+.+++-....|++++|-..|-.|+.+.
T Consensus       290 ~v~Fysp~G-------------~i~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  290 KVHFYSPYG-------------HIVGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             eEEEeccch-------------hheEEEecCCceeeeeEEcCCceEEEEEe
Confidence            445554332             46667777778899999987554444443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.5e-13  Score=116.88  Aligned_cols=233  Identities=14%  Similarity=0.145  Sum_probs=137.6

Q ss_pred             cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           46 KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        46 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      .|.++|.+.....   .+..+...+....|+|||+.|+..+.+   ..|.+||+.+++....   ...      .+....
T Consensus       199 ~l~i~d~dG~~~~---~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l---t~~------~g~~~~  266 (448)
T PRK04792        199 QLMIADYDGYNEQ---MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSF------PGINGA  266 (448)
T ss_pred             EEEEEeCCCCCce---EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe---cCC------CCCcCC
Confidence            5777787665443   445566788899999999998876543   2688889887653221   111      112346


Q ss_pred             EeeCCCCCeEEEe-eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeeccceee
Q psy988          123 IEPMPGEDKILVT-SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYAK  196 (408)
Q Consensus       123 ~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~  196 (408)
                      ..|+|+++.|+.. ..+|  .|+++|+.+++... +..+.  .......|+|||++|+..+. ++  .|+++|+.++...
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~--~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR--AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            7899999988764 4555  48888888776433 33222  22445789999998876654 34  4555555432111


Q ss_pred             eeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CC--e
Q psy988          197 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DS--R  273 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~  273 (408)
                                             .+.+.                         .......+|+|||++|+..+. ++  .
T Consensus       344 -----------------------~Lt~~-------------------------g~~~~~~~~SpDG~~l~~~~~~~g~~~  375 (448)
T PRK04792        344 -----------------------RLTFE-------------------------GEQNLGGSITPDGRSMIMVNRTNGKFN  375 (448)
T ss_pred             -----------------------EEecC-------------------------CCCCcCeeECCCCCEEEEEEecCCceE
Confidence                                   00000                         000112345666666655433 33  4


Q ss_pred             EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC-c--eEEEeeccccCccccccccCccccceeeeeeccc
Q psy988          274 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-Q--CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  350 (408)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  350 (408)
                      |.++|+.+++... +....   ......|+|||++|+..+.+ +  .+++++.+.             .....+..+.+.
T Consensus       376 I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-------------~~~~~l~~~~g~  438 (448)
T PRK04792        376 IARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-------------RFKARLPAGQGE  438 (448)
T ss_pred             EEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-------------CceEECcCCCCC
Confidence            6667888776533 22211   11245899999988765543 3  367777643             233445555666


Q ss_pred             eEEEEecC
Q psy988          351 VTCAVFAP  358 (408)
Q Consensus       351 v~~~~~~~  358 (408)
                      +...+|+|
T Consensus       439 ~~~p~Wsp  446 (448)
T PRK04792        439 VKSPAWSP  446 (448)
T ss_pred             cCCCccCC
Confidence            78888988

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=7.4e-13  Score=116.12  Aligned_cols=233  Identities=13%  Similarity=0.132  Sum_probs=140.9

Q ss_pred             cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           46 KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        46 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      .|.++|.+.+...   .+..+...+....|+|||+.|+..+.+   ..|.+|++.+++.....   .      ..+....
T Consensus       180 ~l~~~d~~g~~~~---~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~------~~g~~~~  247 (430)
T PRK00178        180 TLQRSDYDGARAV---TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---N------FEGLNGA  247 (430)
T ss_pred             EEEEECCCCCCce---EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---C------CCCCcCC
Confidence            4777887766543   455567788999999999999877644   36889999876532211   1      1123456


Q ss_pred             EeeCCCCCeEEEe-eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeeccceee
Q psy988          123 IEPMPGEDKILVT-SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYAK  196 (408)
Q Consensus       123 ~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~  196 (408)
                      ..|+|+|+.|+.. ..+|  .|++||+.+++... +..+..  ......|+|||+.|+..+. +|  .|+++|+.++...
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            8999999988754 3344  68888998876433 332222  2345789999998876654 33  4666665433211


Q ss_pred             eeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC---Ce
Q psy988          197 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND---SR  273 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~  273 (408)
                                             .+.+.                         ........|+|+|++++....+   ..
T Consensus       325 -----------------------~lt~~-------------------------~~~~~~~~~Spdg~~i~~~~~~~~~~~  356 (430)
T PRK00178        325 -----------------------RVTFV-------------------------GNYNARPRLSADGKTLVMVHRQDGNFH  356 (430)
T ss_pred             -----------------------EeecC-------------------------CCCccceEECCCCCEEEEEEccCCceE
Confidence                                   00000                         0001123456666666655432   25


Q ss_pred             EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC---ceEEEeeccccCccccccccCccccceeeeeeccc
Q psy988          274 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  350 (408)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  350 (408)
                      |.++|+.+++.......  .  ......|+|||++++..+.+   ..++++++...             ....+..+.+.
T Consensus       357 l~~~dl~tg~~~~lt~~--~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-------------~~~~l~~~~g~  419 (430)
T PRK00178        357 VAAQDLQRGSVRILTDT--S--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-------------VRLPLPTAQGE  419 (430)
T ss_pred             EEEEECCCCCEEEccCC--C--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-------------ceEECcCCCCC
Confidence            88899988765332222  1  11246899999999876543   34667776542             22234444566


Q ss_pred             eEEEEecC
Q psy988          351 VTCAVFAP  358 (408)
Q Consensus       351 v~~~~~~~  358 (408)
                      +...+|+|
T Consensus       420 ~~~p~ws~  427 (430)
T PRK00178        420 VREPSWSP  427 (430)
T ss_pred             cCCCccCC
Confidence            77788887

>KOG2321|consensus

Probab=99.61  E-value=1.7e-13  Score=114.07  Aligned_cols=252  Identities=11%  Similarity=0.137  Sum_probs=164.6

Q ss_pred             CCceeeEEEEEecCCCEE-EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988           65 GQTKLITAANFCENGKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  143 (408)
                      .+...-+.+..+|||+|+ ++|.....|++||+.+........+..        ..|.-.-.+.|-..++.-..|.+|.+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDa--------e~V~feiLsDD~SK~v~L~~DR~Ief  120 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDA--------EVVDFEILSDDYSKSVFLQNDRTIEF  120 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccc--------cceeEEEeccchhhheEeecCceeee
Confidence            466778899999999986 567778899999998766544333221        23444444545555666667777766


Q ss_pred             EEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          144 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       144 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ...-.......+..     ....++++.-..-|++++....|+-++++.            +..+..+......++++..
T Consensus       121 Hak~G~hy~~RIP~-----~GRDm~y~~~scDly~~gsg~evYRlNLEq------------GrfL~P~~~~~~~lN~v~i  183 (703)
T KOG2321|consen  121 HAKYGRHYRTRIPK-----FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ------------GRFLNPFETDSGELNVVSI  183 (703)
T ss_pred             hhhcCeeeeeecCc-----CCccccccCCCccEEEeecCcceEEEEccc------------cccccccccccccceeeee
Confidence            54321111111111     122355655444455555556788888754            3344444444444555544


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc---------ce
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV---------NV  294 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~  294 (408)
                      +                                   +-..+|++|+.+|.|..||.++...+.++....         ..
T Consensus       184 n-----------------------------------~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~  228 (703)
T KOG2321|consen  184 N-----------------------------------EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA  228 (703)
T ss_pred             c-----------------------------------CccceEEecccCceEEEecchhhhhheeeecccccCCCcccccc
Confidence            4                                   445667889999999999999877666654321         22


Q ss_pred             eceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988          295 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  374 (408)
Q Consensus       295 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~  374 (408)
                      ..|+++.|+.+|-.+++|..+|.|.|||+++..+           ++..-.+..-+|..+.|.+.+              
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----------l~~kdh~~e~pi~~l~~~~~~--------------  283 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----------LLVKDHGYELPIKKLDWQDTD--------------  283 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----------eeecccCCccceeeecccccC--------------
Confidence            3589999999999999999999999999998632           222233345688999998731              


Q ss_pred             cccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          375 TGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       375 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      ++..|+|.. ...++|||-.+++....+
T Consensus       284 ~q~~v~S~D-k~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  284 QQNKVVSMD-KRILKIWDECTGKPMASI  310 (703)
T ss_pred             CCceEEecc-hHHhhhcccccCCceeec
Confidence            356677664 678999999999876554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=3.9e-11  Score=94.96  Aligned_cols=280  Identities=13%  Similarity=0.158  Sum_probs=176.1

Q ss_pred             CCcEEEEecCCCCc-eeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCC--eeeEEEEEeeccccccCC
Q psy988           44 DGKLRLWNIPDKKV-AVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQL--KYHTQIHVRSTRGKNATG  117 (408)
Q Consensus        44 dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~  117 (408)
                      +.-|++|++.+..- +....+-.+...++-++|+|++++|.++..+   |.|.-|.++..  .. ..+.....     ..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~-----~g   88 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTL-----PG   88 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeecccc-----CC
Confidence            46799999984322 1113444567788999999999999988665   77888887753  32 21111111     12


Q ss_pred             CCeEEEeeCCCCCeEEEee-CCCeEEEEEccC-cccceee--cCccc--------cccceEEEEecCCCEEEEeec-Cce
Q psy988          118 RKISGIEPMPGEDKILVTS-NDSRIRLYDLRD-LNLSCKY--KGYVN--------VSSQIKASFSHDGKYIVSGSE-NQC  184 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~l~~~~~-dg~  184 (408)
                      .+.+.+++++++++++++. ..|.|.++-++. |.+....  ..|..        ...+-...+.|++++|++.+- .-.
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr  168 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR  168 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence            3448899999999999984 468999999865 3322111  11111        111456789999999888753 236


Q ss_pred             EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe
Q psy988          185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK  264 (408)
Q Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (408)
                      |.+|++..+.......        .                                    .-..+...+.|.|+|++++
T Consensus       169 i~~y~~~dg~L~~~~~--------~------------------------------------~v~~G~GPRHi~FHpn~k~  204 (346)
T COG2706         169 IFLYDLDDGKLTPADP--------A------------------------------------EVKPGAGPRHIVFHPNGKY  204 (346)
T ss_pred             EEEEEcccCccccccc--------c------------------------------------ccCCCCCcceEEEcCCCcE
Confidence            9999987432211000        0                                    0033445566777777777


Q ss_pred             EEEe-cCCCeEEEEEcCCC-eeeeEEe-------eccceeceeEEEEcCCCCEEEEecC-CceEEEeeccccCccccccc
Q psy988          265 ILVT-SNDSRIRLYDLRDL-NLSCKYK-------GYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVR  334 (408)
Q Consensus       265 l~~~-~~d~~i~i~d~~~~-~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~  334 (408)
                      ..+. --+++|.+|..... .....++       ...+......+..+|||++|.++.. ...|.+|.+.......    
T Consensus       205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L----  280 (346)
T COG2706         205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL----  280 (346)
T ss_pred             EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE----
Confidence            6654 56899999998873 2222222       1223345568899999999998764 3478888887643221    


Q ss_pred             cCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC-CeEEEEeCCCCC
Q psy988          335 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN-GVIRVFLNKTKP  397 (408)
Q Consensus       335 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~v~iw~~~~~~  397 (408)
                          ..+.....+...-+.+.|+|                +|++|+.++.| ..|.+|.....+
T Consensus       281 ----~~~~~~~teg~~PR~F~i~~----------------~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         281 ----ELVGITPTEGQFPRDFNINP----------------SGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             ----EEEEEeccCCcCCccceeCC----------------CCCEEEEEccCCCcEEEEEEcCCC
Confidence                22223333444467899999                88888888774 468888876544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.5e-12  Score=110.44  Aligned_cols=240  Identities=14%  Similarity=0.041  Sum_probs=136.2

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE---EEEecC--CEEEEEeccCCeeeEEEEEeeccccccCCCC
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA---VVGSYD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRK  119 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  119 (408)
                      ..|.+.|.+.+...   .+.........-.|+|||+.+   ++...+  ..|.+.++.+++......   .      .+.
T Consensus       165 ~~l~~~d~dG~~~~---~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~---~------~g~  232 (428)
T PRK01029        165 GELWSVDYDGQNLR---PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA---L------QGN  232 (428)
T ss_pred             ceEEEEcCCCCCce---EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec---C------CCC
Confidence            36777887776554   344455567788999999752   233333  357777887765332211   1      123


Q ss_pred             eEEEeeCCCCCeEEEeeC-CC----eEEEEEccCc---ccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeee
Q psy988          120 ISGIEPMPGEDKILVTSN-DS----RIRLYDLRDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKT  190 (408)
Q Consensus       120 v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~  190 (408)
                      .....|+|||+.|+..+. +|    .+..|++..+   +.........  ......+|+|||+.|+..+ .+|...+|.+
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~--~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF--GTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC--CCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            456799999999887653 22    3444676653   2222222211  1133578999999887765 4565555543


Q ss_pred             ccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC
Q psy988          191 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN  270 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (408)
                      .....         ......+..                                   ....+....|+|||+.|+..+.
T Consensus       311 ~~~~~---------g~~~~~lt~-----------------------------------~~~~~~~p~wSPDG~~Laf~~~  346 (428)
T PRK01029        311 QIDPE---------GQSPRLLTK-----------------------------------KYRNSSCPAWSPDGKKIAFCSV  346 (428)
T ss_pred             ECccc---------ccceEEecc-----------------------------------CCCCccceeECCCCCEEEEEEc
Confidence            21000         000000111                                   1122334455666666655432


Q ss_pred             ---CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC---CceEEEeeccccCccccccccCccccceee
Q psy988          271 ---DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  344 (408)
Q Consensus       271 ---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  344 (408)
                         ...|.+||+.+++....... .  ..+....|+|||++|+....   ...|+++++.++.             ...+
T Consensus       347 ~~g~~~I~v~dl~~g~~~~Lt~~-~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-------------~~~L  410 (428)
T PRK01029        347 IKGVRQICVYDLATGRDYQLTTS-P--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK-------------TRKI  410 (428)
T ss_pred             CCCCcEEEEEECCCCCeEEccCC-C--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-------------EEEe
Confidence               24799999998876543322 1  23457899999998875332   3568888887652             2223


Q ss_pred             eeeccceEEEEecC
Q psy988          345 KAHNAVVTCAVFAP  358 (408)
Q Consensus       345 ~~h~~~v~~~~~~~  358 (408)
                      ....+.+...+|+|
T Consensus       411 t~~~g~~~~p~Ws~  424 (428)
T PRK01029        411 VIGSGEKRFPSWGA  424 (428)
T ss_pred             ecCCCcccCceecC
Confidence            33445567788888

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.8e-12  Score=110.98  Aligned_cols=180  Identities=12%  Similarity=0.014  Sum_probs=108.8

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCE--E-EEEeCCC--cEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRY--F-LSGSLDG--KLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~--l-~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      ..|.+.|.+.+...........+.+-+||| ||+.  + ++...+|  .|.+.++.+++...+..+   .+.....+|+|
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSP  240 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSP  240 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECC
Confidence            367788888777766655667788899999 8764  2 2443443  588888888876543333   33455689999


Q ss_pred             CCCEEEEEec-CC----EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEE--EccC-
Q psy988           78 NGKFAVVGSY-DG----RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLY--DLRD-  148 (408)
Q Consensus        78 ~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~-  148 (408)
                      ||+.|+..+. +|    .+..|++..+.......+..     ..........|+|||+.|+..+ .+|...+|  ++.. 
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-----~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-----EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-----CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence            9998887653 22    34446665431100000110     0112335679999999888765 45654555  4432 


Q ss_pred             cccceeecCccccccceEEEEecCCCEEEEeecC---ceEEEeeeccc
Q psy988          149 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHHD  193 (408)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~  193 (408)
                      +.....+....  ..+....|+|||+.|+....+   ..|++||+.++
T Consensus       316 g~~~~~lt~~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        316 GQSPRLLTKKY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             ccceEEeccCC--CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            22223333222  224467899999998876543   36888888654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.55  E-value=4.2e-10  Score=105.54  Aligned_cols=332  Identities=12%  Similarity=0.129  Sum_probs=195.7

Q ss_pred             CceEEEEEcCCCCCEEEEEeC-CC--cEEEEecCCCC-ceeeeeec-----CCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           23 DFVTAICFHPRDDRYFLSGSL-DG--KLRLWNIPDKK-VAVWNEVE-----GQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~-dg--~i~iw~~~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      ..+...+|.+..+..+++.+. ..  .|.+-...... ...+..+.     .....|.++.+.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            457778888733333333332 22  23333333222 11112222     33467999999999999999999999999


Q ss_pred             E----eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc---------------C------
Q psy988           94 Y----TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR---------------D------  148 (408)
Q Consensus        94 w----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---------------~------  148 (408)
                      .    +..+........         ....|.+++|+||+..|+..+.++++.+.+-.               .      
T Consensus       102 ~~~~~~~~~~~~E~VG~---------vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV  172 (928)
T PF04762_consen  102 VREDPDPDEDEIEIVGS---------VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV  172 (928)
T ss_pred             EEccCCCCCceeEEEEE---------EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence            9    544433222111         12489999999999999999988888876421               0      


Q ss_pred             --cccceeecCccc----------------------cccceEEEEecCCCEEEEeec---C---ceEEEeeeccceeeee
Q psy988          149 --LNLSCKYKGYVN----------------------VSSQIKASFSHDGKYIVSGSE---N---QCIYIWKTHHDYAKFS  198 (408)
Q Consensus       149 --~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~  198 (408)
                        |+....|.+..+                      ...-..++|-.||+++++.+.   .   ..+++|+-+ +.... 
T Consensus       173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s-  250 (928)
T PF04762_consen  173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS-  250 (928)
T ss_pred             ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe-
Confidence              111111111110                      112346889999999998764   2   579999865 22111 


Q ss_pred             ecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC-----------CCCceee--ecCCCceeeeeccCCCCCeE
Q psy988          199 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-----------SESTGYV--LNATGRKISGIEPMPGEDKI  265 (408)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~i~~~~~~~~~~~l  265 (408)
                                 ....-.+--.+++|.|.|..++.......           .......  +......+..+.|++|+..|
T Consensus       251 -----------tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iL  319 (928)
T PF04762_consen  251 -----------TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEIL  319 (928)
T ss_pred             -----------ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEE
Confidence                       11111222346789999988877643111           1111111  12345689999999999999


Q ss_pred             EEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCC-CCEEEEecCCceEEEeecc----ccCccc---------
Q psy988          266 LVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHD-GKYIVSGSENQCIYIWKTH----HDYAKF---------  330 (408)
Q Consensus       266 ~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~----~~~~~~---------  330 (408)
                      |+...|. |.+|-..+..-..+..-. .....+..+.|+|. ...|.....+|.+..+++.    .+....         
T Consensus       320 Av~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV  398 (928)
T PF04762_consen  320 AVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV  398 (928)
T ss_pred             EEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence            9977655 999999887633322211 11223345899994 4456666665666554432    211000         


Q ss_pred             --------c-----ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          331 --------S-----SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       331 --------~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                              +     .++++.  ....+ ....+|.+++|++                ++..+|+-..||.|.+|.....
T Consensus       399 IDG~~lllTpf~~a~VPPPM--s~~~l-~~~~~v~~vaf~~----------------~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  399 IDGNKLLLTPFRRAVVPPPM--SSYEL-ELPSPVNDVAFSP----------------SNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EeCCeEEEecccccCCCchH--hceEE-cCCCCcEEEEEeC----------------CCCeEEEEECCCCEEEEEecCC
Confidence                    0     011111  11122 2357899999999                7777888899999999986554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.55  E-value=4.9e-11  Score=102.91  Aligned_cols=294  Identities=13%  Similarity=0.090  Sum_probs=173.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceE-EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVT-AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~-~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      +|.|.-+|..+|+.+-.+.-.+.+. ....   ++..++.++.+|.+..+|..+++..-...+.   ..+.+.... .+.
T Consensus        74 ~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v-~~~  146 (377)
T TIGR03300        74 DGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV-ANG  146 (377)
T ss_pred             CCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE-ECC
Confidence            5778888988998887766333332 2222   4566788888999999999998865322222   122211111 345


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      .++.++.+|.+..||.++++...............  .. .....  .+..++++..++.+..+|+++++.+........
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~--~~-~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~  221 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR--GS-ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP  221 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeec--CC-CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence            67778889999999999888765543221100000  00 01111  134677888889999999999876654321110


Q ss_pred             c--c---cceEEEEec--CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988          161 V--S---SQIKASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  233 (408)
Q Consensus       161 ~--~---~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  233 (408)
                      .  .   ....+.-+|  .+..+++++.+|.++.||.+++.......          ...    .               
T Consensus       222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~----------~~~----~---------------  272 (377)
T TIGR03300       222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD----------ASS----Y---------------  272 (377)
T ss_pred             CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec----------cCC----c---------------
Confidence            0  0   000000011  35578888889999999987654332110          000    0               


Q ss_pred             cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec
Q psy988          234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  313 (408)
                                            ......+..+++++.+|.+..+|..+++.+-........ .......  .+..|++++
T Consensus       273 ----------------------~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ssp~i--~g~~l~~~~  327 (377)
T TIGR03300       273 ----------------------QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTAPAV--VGGYLVVGD  327 (377)
T ss_pred             ----------------------cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-ccccCEE--ECCEEEEEe
Confidence                                  001113556777889999999999999876554321111 1111122  467899999


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccce-EEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV-TCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF  391 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw  391 (408)
                      .+|.|+++|..++            +.+..+..+...+ .+..+.                 ++ .|+.++.||.|+.|
T Consensus       328 ~~G~l~~~d~~tG------------~~~~~~~~~~~~~~~sp~~~-----------------~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       328 FEGYLHWLSREDG------------SFVARLKTDGSGIASPPVVV-----------------GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCEEEEEECCCC------------CEEEEEEcCCCccccCCEEE-----------------CC-EEEEEeCCceEEEe
Confidence            9999999999887            4444454444332 222332                 33 57788889999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280|consensus

Probab=99.55  E-value=3e-12  Score=97.92  Aligned_cols=279  Identities=17%  Similarity=0.214  Sum_probs=177.0

Q ss_pred             CCcEEEEecCCCCceeeeeec-CCceeeEEEEEec---CCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988           44 DGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCE---NGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR  118 (408)
Q Consensus        44 dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  118 (408)
                      .|.+.+|++...+......++ .....+..+.|..   +|. .++-+-..|.|.++..........  +...........
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~~ls~~ki~~~  122 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LRGLSSKKISVV  122 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ecccchhhhhhe
Confidence            478899999877655422222 1234577777763   455 456677789999998765443222  222222111112


Q ss_pred             CeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce--eecCccccccceEEEEec-CCCEEEEeecCceEEEeeecccee
Q psy988          119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC--KYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYA  195 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  195 (408)
                      ...++.|++.+..++++-.+|.+.+-+........  .++.|.-.  ...+.|+. +.+.+++|+.|+.+..||++.+. 
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-  199 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-  199 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeeeecccCCCceEEecCCCceEEEEEecCCc-
Confidence            35678899999999999999999866655444433  56666554  44456654 44788999999999999997321 


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEE
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIR  275 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  275 (408)
                               .-.++..+.|...|.++.-+|.                                  .+.++++|+.|..|+
T Consensus       200 ---------~~i~~n~kvH~~GV~SI~ss~~----------------------------------~~~~I~TGsYDe~i~  236 (339)
T KOG0280|consen  200 ---------TFIWHNSKVHTSGVVSIYSSPP----------------------------------KPTYIATGSYDECIR  236 (339)
T ss_pred             ---------ceeeecceeeecceEEEecCCC----------------------------------CCceEEEecccccee
Confidence                     1222334555566666655442                                  456799999999999


Q ss_pred             EEEcCC-CeeeeEEeeccceeceeEEEEcCC--CCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE
Q psy988          276 LYDLRD-LNLSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  352 (408)
Q Consensus       276 i~d~~~-~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  352 (408)
                      +||.++ ++++..-.   ..+.|..+.++|.  ++.|+++-.+| .+|-+.+.+..++.       ......+.|.+-+.
T Consensus       237 ~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~-------~~~~s~~~hdSl~Y  305 (339)
T KOG0280|consen  237 VLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ-------IVLPSDKIHDSLCY  305 (339)
T ss_pred             eeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh-------eeeeccccccceee
Confidence            999995 44443322   2357899999994  33455554444 67777766533211       23444566877777


Q ss_pred             EEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEE-EEeCCCCC
Q psy988          353 CAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIR-VFLNKTKP  397 (408)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~-iw~~~~~~  397 (408)
                      .-.|..                ...+|||++ .|..++ +|-.-++.
T Consensus       306 G~DWd~----------------~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  306 GGDWDS----------------KDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cccccc----------------ccceeeeeeccccceeeeeeeccCC
Confidence            888855                445788875 588866 88766554

>KOG2314|consensus

Probab=99.53  E-value=7.7e-12  Score=103.99  Aligned_cols=293  Identities=14%  Similarity=0.182  Sum_probs=184.8

Q ss_pred             EEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC-----------CcEEEEecCCCCceeeeeecC---Cceee
Q psy988            5 VRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD-----------GKLRLWNIPDKKVAVWNEVEG---QTKLI   70 (408)
Q Consensus         5 i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d-----------g~i~iw~~~~~~~~~~~~~~~---~~~~v   70 (408)
                      |.+|--.+-..++.+-|.+ |.-+.||| +.+||+|-+..           ..++|||+.+|...  +.+..   ....-
T Consensus       233 I~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk--rsF~~~~~~~~~W  308 (698)
T KOG2314|consen  233 IALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK--RSFPVIKSPYLKW  308 (698)
T ss_pred             eeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchh--cceeccCCCcccc
Confidence            5566555555556666764 89999999 99999997641           56999999999876  33332   11222


Q ss_pred             EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-----CCeEEEEE
Q psy988           71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-----DSRIRLYD  145 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d  145 (408)
                      .-..||.|++++|.-.. ..|.||+...........+        .-..|....|+|.++.|+.-..     -..+.+..
T Consensus       309 P~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~e  379 (698)
T KOG2314|consen  309 PIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLME  379 (698)
T ss_pred             ceEEeccCCceeEEecc-ceEEEEecCceeeeccccc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEe
Confidence            34679999999988766 5799998876443222211        1247888999999888876532     23466777


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCEEEEee----------cCceEEEeeeccceeeeeecccCCCcccccccccc
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS----------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  215 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                      +.+++.++....+.  ..-..+-|-.+|.+|+.--          .-..+.|+.++.....           +. ...-.
T Consensus       380 vPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp-----------ve-~velk  445 (698)
T KOG2314|consen  380 VPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-----------VE-VVELK  445 (698)
T ss_pred             cCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC-----------ce-eeecc
Confidence            77666655543322  1223467777888876532          1123555555432211           11 12335


Q ss_pred             ceEEEEEEeCCcceeeeecCCCC-CCC-----------ceeeecCCCceeeeeccCCCCCeEEEe---cCCCeEEEEEcC
Q psy988          216 AVVTCAVFAPCPELIIAQMEPDK-SES-----------TGYVLNATGRKISGIEPMPGEDKILVT---SNDSRIRLYDLR  280 (408)
Q Consensus       216 ~~v~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~  280 (408)
                      ..|...+|-|.|..+++-..... ...           ...+........+.+.|+|.|++++++   +..|.+.++|+.
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            67888999999988765432222 111           111112223456788999999999886   567899999987


Q ss_pred             CCeeeeEEeeccceeceeEEEEcCCCCEEEEecC------CceEEEeecccc
Q psy988          281 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE------NQCIYIWKTHHD  326 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~  326 (408)
                      ...+...  ++......+.+-|.|.|+|+.+++.      |.--+||++...
T Consensus       526 ~a~~k~~--~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  526 YADLKDT--ASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             hhhhhhc--cCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            4332222  1122224567899999999999874      455678887653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.52  E-value=6.2e-11  Score=96.96  Aligned_cols=147  Identities=19%  Similarity=0.151  Sum_probs=115.5

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCC-cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEecc
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDG-KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~   97 (408)
                      ++|.+.|.-..+.. +++-++.|..|| .+-|+|..+++..   .....-+.|.++..+++|++++.+.....+.+.|++
T Consensus       356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k---r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK---RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE---EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            45888899999988 777899999999 8999999998765   556667789999999999999999999999999999


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----CeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      +++....-..        ..+-|+.+.|+|++++++.+--+    ..|+++|+.+++..........   -.+-+|.|++
T Consensus       432 ngnv~~idkS--------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~---DfsPaFD~d~  500 (668)
T COG4946         432 NGNVRLIDKS--------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY---DFSPAFDPDG  500 (668)
T ss_pred             CCCeeEeccc--------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCccc---ccCcccCCCC
Confidence            8875432221        22579999999999999988554    4699999998776544332222   3346799999


Q ss_pred             CEEEEee
Q psy988          174 KYIVSGS  180 (408)
Q Consensus       174 ~~l~~~~  180 (408)
                      ++|..-+
T Consensus       501 ryLYfLs  507 (668)
T COG4946         501 RYLYFLS  507 (668)
T ss_pred             cEEEEEe
Confidence            9987654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.52  E-value=1.1e-10  Score=95.62  Aligned_cols=203  Identities=13%  Similarity=0.097  Sum_probs=144.3

Q ss_pred             CceEEEEeccCCeeEeEE-E-----------eCCceEEEE-EcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce
Q psy988            2 DKTVRLWHISRKECLCCF-Q-----------HIDFVTAIC-FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~-~-----------h~~~v~~~~-~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      -|.|.++|.++.+....- +           .-.+..-+. |++.+|++++..|. |...|.+...+-.+    --+|..
T Consensus       286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i----qv~~~~  360 (668)
T COG4946         286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI----QVGKKG  360 (668)
T ss_pred             CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE----EcCCCC
Confidence            478899998876544321 1           111222233 66668999999987 88888887666543    235666


Q ss_pred             eeEEEEEecCCCEEEEEecCC-EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           69 LITAANFCENGKFAVVGSYDG-RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      .|.-..+..+++-++.|..|| .+-|+|.++++......         .-+.|.++..+|+|++++++.....|.+.|+.
T Consensus       361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---------~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---------DLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC---------CccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            788888888888899999999 89999999877433221         22579999999999999999998999999999


Q ss_pred             CcccceeecCccccccceEEEEecCCCEEEEeecCc----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          148 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      +++....-+.  ....++.+.|+|++++||.+--+|    .|+++|+..++.-.             .......=.+-+|
T Consensus       432 ngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-------------vTT~ta~DfsPaF  496 (668)
T COG4946         432 NGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-------------VTTPTAYDFSPAF  496 (668)
T ss_pred             CCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-------------ecCCcccccCccc
Confidence            9876543333  334588899999999999886655    78999997654321             1112222345578


Q ss_pred             eCCcceeeee
Q psy988          224 APCPELIIAQ  233 (408)
Q Consensus       224 ~~~~~~~~~~  233 (408)
                      .|++++|..-
T Consensus       497 D~d~ryLYfL  506 (668)
T COG4946         497 DPDGRYLYFL  506 (668)
T ss_pred             CCCCcEEEEE
Confidence            8899888654

>KOG1409|consensus

Probab=99.50  E-value=2.6e-12  Score=100.34  Aligned_cols=247  Identities=17%  Similarity=0.212  Sum_probs=172.8

Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988          114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                      .++...++....-|...-+++.+.|.++++|--++......-..+..+..+.++.+.++...|++|-.+|++.-+.+...
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed  100 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED  100 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence            45556777777888888999999999999996554322222223445566888999999999999999999999988655


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce-eeecCCCc-----eeeeeccCCCCCeEEE
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLNATGR-----KISGIEPMPGEDKILV  267 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~i~~~~~~~~~~~l~~  267 (408)
                      ..+        ....+....|...+..+.|+-..+.++....+......- ..-..-++     ..+.+.+.-.  +...
T Consensus       101 fnk--------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen  101 FNK--------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV  170 (404)
T ss_pred             hhh--------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence            433        344566778899999999998887777654332210000 00000000     0111111111  4455


Q ss_pred             ecCCCeEEEEEcC--CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee
Q psy988          268 TSNDSRIRLYDLR--DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  345 (408)
Q Consensus       268 ~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  345 (408)
                      |...|.|.+-.+.  .-.++.++.+|..  .+++++|.|..+.|.+|..|..+.+||+....           .....+.
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~--~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-----------g~~~el~  237 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTG--EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-----------GTAYELQ  237 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCccc--ceEEEEEcCCCcEEEeccccCceEEEeccCCc-----------ceeeeec
Confidence            6666666555443  3455666777655  88999999999999999999999999998652           3445678


Q ss_pred             eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          346 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       346 ~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      +|...|..+...+                --+.|.+++.||.|.+|+++..+.+
T Consensus       238 gh~~kV~~l~~~~----------------~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  238 GHNDKVQALSYAQ----------------HTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             cchhhhhhhhhhh----------------hheeeeeccCCCeEEEEeccceeec
Confidence            8999999999888                7789999999999999999876644

>KOG4547|consensus

Probab=99.48  E-value=9e-12  Score=104.35  Aligned_cols=196  Identities=14%  Similarity=0.184  Sum_probs=140.5

Q ss_pred             CCCCeEEEeeCCCeEEEEEccCcccceeecCcccc-ccceEEEEe--------------------cCCCEEEEeecCceE
Q psy988          127 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV-SSQIKASFS--------------------HDGKYIVSGSENQCI  185 (408)
Q Consensus       127 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------~~~~~l~~~~~dg~i  185 (408)
                      |...+++....||.+++||...++....+...... ....+..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44678899999999999999988877666543221 112223331                    123356667777778


Q ss_pred             EEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE
Q psy988          186 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI  265 (408)
Q Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (408)
                      .+|+...+.....                                             .....|.+.+.++.++.+-..|
T Consensus        83 ~~ys~~~g~it~~---------------------------------------------~st~~h~~~v~~~~~~~~~~ci  117 (541)
T KOG4547|consen   83 LLYSVAGGEITAK---------------------------------------------LSTDKHYGNVNEILDAQRLGCI  117 (541)
T ss_pred             EEEEecCCeEEEE---------------------------------------------EecCCCCCcceeeecccccCce
Confidence            8887755432211                                             0112455566666666677788


Q ss_pred             EEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee
Q psy988          266 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  345 (408)
Q Consensus       266 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  345 (408)
                      .+++.|+.+..|+....+..+.+.....  .+.+++.+|||..+++++  +.|++||+++.            +.+..+.
T Consensus       118 yS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is~D~~~l~~as--~~ik~~~~~~k------------evv~~ft  181 (541)
T KOG4547|consen  118 YSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCISPDGKILLTAS--RQIKVLDIETK------------EVVITFT  181 (541)
T ss_pred             EecCCceeEEEEecccceeeeeeccCCC--ccceEEEcCCCCEEEecc--ceEEEEEccCc------------eEEEEec
Confidence            9999999999999999999999887654  677899999999999886  57999999997            8899999


Q ss_pred             eeccceEEEEecCCchhhhhccCCCCCCC-cccEEE-EEecCCeEEEEeCCC
Q psy988          346 AHNAVVTCAVFAPCPELIIAQMEPDKSES-TGYVLV-SADFNGVIRVFLNKT  395 (408)
Q Consensus       346 ~h~~~v~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~-s~~~dg~v~iw~~~~  395 (408)
                      +|.++|++++|--+            +.. .|.++. ++..+.-+.+|-+..
T Consensus       182 gh~s~v~t~~f~~~------------~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  182 GHGSPVRTLSFTTL------------IDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCcceEEEEEEEe------------ccccccceeeeccccccceeEEEEEc
Confidence            99999999999762            000 155544 555677788887765

>KOG1912|consensus

Probab=99.47  E-value=2.5e-11  Score=105.14  Aligned_cols=183  Identities=10%  Similarity=0.052  Sum_probs=125.3

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCC-----------CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPR-----------DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT   71 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~-----------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~   71 (408)
                      .|.|-|..+.+.++.+. |...|+.+.|.|.           ..-+||++...|.|.+||...+...  ..+..|..++.
T Consensus        36 lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~--~~l~~~~~~~q  113 (1062)
T KOG1912|consen   36 LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI--NWLSHSNDSVQ  113 (1062)
T ss_pred             eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh--hhhcCCCcchh
Confidence            57778888888899888 9999999999872           1236778888899999999988776  57888899999


Q ss_pred             EEEEecC---C-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEc
Q psy988           72 AANFCEN---G-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDL  146 (408)
Q Consensus        72 ~~~~~~~---~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~  146 (408)
                      .++|-+.   . ..|++-....++.+|+..+++........        .....|+.+.| +.+.+..-+..|.+.+-+.
T Consensus       114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--------~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--------HEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC--------CcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            9999763   3 46777777889999999998765544322        23667788888 5556666666677776654


Q ss_pred             cC-------cccceeecCccc-----------------------cccceEEEEecCCCEEEEeecCceEEEeeeccceee
Q psy988          147 RD-------LNLSCKYKGYVN-----------------------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       147 ~~-------~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (408)
                      -.       ++..+.-..|..                       ......++|+|.-+.++.......+.++|++-....
T Consensus       186 l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l  265 (1062)
T KOG1912|consen  186 LGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL  265 (1062)
T ss_pred             cCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee
Confidence            21       111111111110                       000113467886665665566778999999765443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=6.3e-10  Score=106.42  Aligned_cols=277  Identities=16%  Similarity=0.117  Sum_probs=161.0

Q ss_pred             EEEEEecC-CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc------cccCCCCeEEEeeCCCCCeEEEee-CCCeEE
Q psy988           71 TAANFCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG------KNATGRKISGIEPMPGEDKILVTS-NDSRIR  142 (408)
Q Consensus        71 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  142 (408)
                      ..++++++ +..+++-+.++.|+++|...... .........+      ....-.....+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45778764 56667767788999999865432 1111100000      011123468899999888777764 457899


Q ss_pred             EEEccCcccceeecCc---------------cccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCc
Q psy988          143 LYDLRDLNLSCKYKGY---------------VNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND  206 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  206 (408)
                      .+|+.++.. .++.+.               ........++++| ++..+++...++.|++||..++...          
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~----------  718 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR----------  718 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE----------
Confidence            999876543 222110               0012345789999 4555566667889999997543211          


Q ss_pred             cccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCCeee
Q psy988          207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNLS  285 (408)
Q Consensus       207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~  285 (408)
                                     .+..+|......      ..  ......-..+..++++|+++.|+ +-+.++.|++||+.++...
T Consensus       719 ---------------~~~G~G~~~~~~------g~--~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~  775 (1057)
T PLN02919        719 ---------------VFSGDGYERNLN------GS--SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR  775 (1057)
T ss_pred             ---------------EEecCCccccCC------CC--ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence                           111111110000      00  00001123467788999988555 4466799999999876532


Q ss_pred             eEEeec-------------c------ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc-ccCccccceeee
Q psy988          286 CKYKGY-------------V------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV-RRDRNDFWEGIK  345 (408)
Q Consensus       286 ~~~~~~-------------~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~  345 (408)
                      ....+.             .      .......++++++|+.+++-..++.|++||..++......- ......--....
T Consensus       776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~  855 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK  855 (1057)
T ss_pred             EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence            111000             0      01123578999999988888889999999987652210000 000000000011


Q ss_pred             eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          346 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       346 ~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      +.-.....+++++                +|+++++-+.+++|++||+.+++.
T Consensus       856 a~l~~P~GIavd~----------------dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        856 AQLSEPAGLALGE----------------NGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccCCceEEEEeC----------------CCCEEEEECCCCEEEEEECCCCcc
Confidence            2223567889999                899999989999999999988764

>KOG1912|consensus

Probab=99.44  E-value=1.5e-10  Score=100.39  Aligned_cols=187  Identities=13%  Similarity=0.090  Sum_probs=124.4

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCC--CC-CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPR--DD-RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~--~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .|.|.+||...+..+..+. |.++|..++|-|.  +. ..|+.-....++.+|+..+|+..  .....-.....|+.+.|
T Consensus        88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~--Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF--WKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee--eccccCCcceeeeeeCC
Confidence            5899999999999998888 8899999999762  33 56666666789999999999865  33444445667788887


Q ss_pred             -CCCEEEEEecCCEEEEEeccCCee----eEEEEEeecccc-----------ccCCC---------CeEEEeeCCCCCeE
Q psy988           78 -NGKFAVVGSYDGRCIFYTTDQLKY----HTQIHVRSTRGK-----------NATGR---------KISGIEPMPGEDKI  132 (408)
Q Consensus        78 -~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~-----------~~~~~---------~v~~~~~~~~~~~l  132 (408)
                       |.+.+...+..|.+.+-+.-....    ...+.+......           ..+..         ....++|+|.-+.+
T Consensus       166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence             556666667777777766432211    111111111000           00000         01235668877767


Q ss_pred             EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCC--CEEEEeecCceEEEeeecc
Q psy988          133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG--KYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       133 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~  192 (408)
                      +.......+.++|++-..++.......+..  .-+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       246 lfi~~prellv~dle~~~~l~vvpier~~a--kfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYECCLAVVPIERGGA--KFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEEeccceEEEcchhhceeEEEEeccCCc--ceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            767677889999999887777665554443  335566655  5699999999999997655

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.42  E-value=5.4e-09  Score=98.31  Aligned_cols=291  Identities=11%  Similarity=0.108  Sum_probs=167.1

Q ss_pred             CceEEEE----eccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-------------C---------
Q psy988            2 DKTVRLW----HISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-------------K---------   55 (408)
Q Consensus         2 Dg~i~vw----d~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-------------~---------   55 (408)
                      +|.|.+.    +..+.+....-.-..+|.+++||| |+..|+..+.++++.+.+-.-             +         
T Consensus        96 ~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGW  174 (928)
T PF04762_consen   96 SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGW  174 (928)
T ss_pred             CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeecc
Confidence            5667777    555444444444888999999999 999999999899988765310             0         


Q ss_pred             -Cce-ee----------------------eeecCCceeeEEEEEecCCCEEEEEec---C---CEEEEEeccCCeeeEEE
Q psy988           56 -KVA-VW----------------------NEVEGQTKLITAANFCENGKFAVVGSY---D---GRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        56 -~~~-~~----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iw~~~~~~~~~~~  105 (408)
                       +.. .+                      ..+. +...-..++|-.||.++|+.+.   .   ..++||+-+ +......
T Consensus       175 GkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS  252 (928)
T PF04762_consen  175 GKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS  252 (928)
T ss_pred             CcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc
Confidence             000 00                      0011 2334567899999999998875   2   578999876 3221111


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCcccceeecCc--cccccceEEEEecCCCEEEEee
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      .        ...+--.+++|-|.|+.+++...   ...|.+|.-+ |-.-..|...  .....+..+.|++|+..|+...
T Consensus       253 E--------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~  323 (928)
T PF04762_consen  253 E--------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL  323 (928)
T ss_pred             c--------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe
Confidence            1        11223456899999999988754   3456677643 3222223222  2334578899999999999987


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee----
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG----  255 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----  255 (408)
                      .|. |.+|-..+-.-..++          .+. .....+..+.|+|....-+.....           ...-.+..    
T Consensus       324 ~~~-vqLWt~~NYHWYLKq----------ei~~~~~~~~~~~~Wdpe~p~~L~v~t~-----------~g~~~~~~~~~~  381 (928)
T PF04762_consen  324 EDR-VQLWTRSNYHWYLKQ----------EIRFSSSESVNFVKWDPEKPLRLHVLTS-----------NGQYEIYDFAWD  381 (928)
T ss_pred             cCC-ceEEEeeCCEEEEEE----------EEEccCCCCCCceEECCCCCCEEEEEec-----------CCcEEEEEEEEE
Confidence            665 999987653322111          111 112223347777754332211110           00001111    


Q ss_pred             ecc----CCCCCeEEEecCCCeEEEEEcCCCeeeeEE--eeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          256 IEP----MPGEDKILVTSNDSRIRLYDLRDLNLSCKY--KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       256 ~~~----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +..    +|++.-++..-...++.+-.++......-+  ....-...|.+++|++++..+|+-..||.|.+|.....
T Consensus       382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            111    122222222233344566555543321111  01112347889999999988999999999999996654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=7.2e-12  Score=96.78  Aligned_cols=254  Identities=19%  Similarity=0.249  Sum_probs=140.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---ceeeeeecCCc------------eeeEEEEEecCCC--EEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK---VAVWNEVEGQT------------KLITAANFCENGK--FAV   83 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~------------~~v~~~~~~~~~~--~l~   83 (408)
                      ..+.|+++.|.. .|.||++|...|.|.+|.-+...   ......+++|.            ..|..+.|..++.  .++
T Consensus        25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            567899999999 89999999999999999865433   22223455554            3577888876543  466


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEee-ccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccceeecCcccc
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRS-TRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNV  161 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~  161 (408)
                      ..+.|.+|++|.+............. ..-+.+.++++++..    .-.+--.+. |..|...      +. ......+.
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~----~l~lprls~hd~iiaa~------p~-rvyaNaH~  172 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK----ELLLPRLSEHDEIIAAK------PC-RVYANAHP  172 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH----HhhcccccccceEEEec------cc-eeccccce
Confidence            66789999999987653221111000 000111112222111    000000011 1111111      11 11112233


Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      ..+.++.+..|...++++ .|-.|.+|++.-....+..+                     ..-|...             
T Consensus       173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIV---------------------DiKP~nm-------------  217 (460)
T COG5170         173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIV---------------------DIKPHNM-------------  217 (460)
T ss_pred             eEeeeeeecCchheeeec-cceeeeeccccccCCceEEE---------------------eccCccH-------------
Confidence            346788999998888877 46789999986432222211                     1111100             


Q ss_pred             ceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcCCCeee----eE----Eeec------cceeceeEEEEcCCC
Q psy988          242 TGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLS----CK----YKGY------VNVSSQIKASFSHDG  306 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~----~~~~------~~~~~v~~~~~s~~~  306 (408)
                           ..-..-|++..|+|.. ..+.-.+..|.|++-|++...+.    ..    +.+.      .-...|..+.|+++|
T Consensus       218 -----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng  292 (460)
T COG5170         218 -----EELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG  292 (460)
T ss_pred             -----HHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC
Confidence                 0111224444555532 33555688899999999842210    00    1110      012356789999999


Q ss_pred             CEEEEecCCceEEEeeccccC
Q psy988          307 KYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       307 ~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +++++-+. .+|+|||.+...
T Consensus       293 ryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         293 RYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             cEEEEecc-ceEEEEeccccc
Confidence            99998754 489999998764

>KOG4547|consensus

Probab=99.41  E-value=1.2e-10  Score=97.75  Aligned_cols=193  Identities=13%  Similarity=0.148  Sum_probs=140.2

Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC--------------------CCCCeEEEee
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM--------------------PGEDKILVTS  136 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~l~~~~  136 (408)
                      |...++|....||.+++|+...++....+....     ...+...+..|.                    .+...++-|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch-----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            456789999999999999999887655443211     111233333332                    1234577788


Q ss_pred             CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          137 NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       137 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      ..|.|.+|+...++....+....+...+.++.++.+-..|.+++.|+.+..|+......            .+...    
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------------~~~~~----  141 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------------IRIWK----  141 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee------------eeeec----
Confidence            89999999999999998888766777788888888889999999999999999864321            11222    


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceec
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS  296 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  296 (408)
                                                     .....+.+++++||+..+++++  +.|++||+++++.+..|.+|..  +
T Consensus       142 -------------------------------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s--~  186 (541)
T KOG4547|consen  142 -------------------------------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS--P  186 (541)
T ss_pred             -------------------------------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc--c
Confidence                                           2333455566667777777766  5799999999999999999876  7


Q ss_pred             eeEEEEcCC-----CCEEEEe-cCCceEEEeeccc
Q psy988          297 QIKASFSHD-----GKYIVSG-SENQCIYIWKTHH  325 (408)
Q Consensus       297 v~~~~~s~~-----~~~l~~~-~~dg~i~iw~~~~  325 (408)
                      |.+++|-.+     |.++.++ ..+..+.+|-+..
T Consensus       187 v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  187 VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            888888776     6776654 4456677887765

>KOG0309|consensus

Probab=99.40  E-value=9.3e-12  Score=107.12  Aligned_cols=316  Identities=14%  Similarity=0.170  Sum_probs=190.8

Q ss_pred             eEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC--CEEEEEecCCEEEEE
Q psy988           17 CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG--KFAVVGSYDGRCIFY   94 (408)
Q Consensus        17 ~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw   94 (408)
                      ..+.-.+++.++..+| .|+-+|.++.-| +.+-|+...-..+........-.|-.+.|+|..  .+-++......-.+|
T Consensus        19 lsl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw   96 (1081)
T KOG0309|consen   19 LSLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW   96 (1081)
T ss_pred             eEEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence            3455778899999999 888899998866 555566553322111111123346677887753  344444445566788


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccc-eeecCccccccceEEEEecC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLS-CKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  172 (408)
                      ++..........     ...+|...|+.+.|+|+.. .+++++.|-.+..||+++.... ..+..-.  .....+.|+..
T Consensus        97 nlA~ss~~aIef-----~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk  169 (1081)
T KOG0309|consen   97 NLAKSSSNAIEF-----VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK  169 (1081)
T ss_pred             hhhcCCccceEE-----EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc
Confidence            876543221111     1235677999999999655 6677888999999999976532 2222211  22445788876


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      ...+.+.+....|++||++.+.           .++..+++|-..+..+.|..-.                         
T Consensus       170 ~p~vlasshg~~i~vwd~r~gs-----------~pl~s~K~~vs~vn~~~fnr~~-------------------------  213 (1081)
T KOG0309|consen  170 DPNVLASSHGNDIFVWDLRKGS-----------TPLCSLKGHVSSVNSIDFNRFK-------------------------  213 (1081)
T ss_pred             CcchhhhccCCceEEEeccCCC-----------cceEEecccceeeehHHHhhhh-------------------------
Confidence            5566666677789999998653           3444555566666666554321                         


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC--EEEEecCCceEEEeeccccCccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK--YIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                               ...+.+.+.|++|+.||............ ....++..-++-|-|.  ++.---.+..+.+++-+......
T Consensus       214 ---------~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~  283 (1081)
T KOG0309|consen  214 ---------YSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW  283 (1081)
T ss_pred             ---------hhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhh
Confidence                     22356789999999999875433222221 1223566667777444  33322223355555544432211


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      .  .......+..+.||.+.|..+.|-..+.-.      .......-.|+|=+.|..+|+|-+..
T Consensus       284 n--~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  284 N--VFDLNTPVHTFVGHDDVVLEFLWRKRKECD------GDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             c--cccCCcceeeecCcchHHHHHhhhhccccc------CCCCccceeEEEeecCCceEeeeccH
Confidence            1  112236788999999999888886522100      00000234799999999999998864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.40  E-value=1.4e-09  Score=93.85  Aligned_cols=280  Identities=13%  Similarity=0.150  Sum_probs=165.2

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      .+..+++++.+|.|..+|..+++..-...+...  ......  .++..++.++.+|.+..+|.++++.........    
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----  135 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----  135 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence            355788888899999999998886532223221  111222  256778888899999999999888765443211    


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc---ceEEEEecCCCEEEEeecCceEEEeee
Q psy988          114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS---QIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                           .+.+.-.. .+..++.++.++.|+.||.++++.+..+........   ....... + ..++.+..+|.+..+|.
T Consensus       136 -----~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       136 -----EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDL  207 (377)
T ss_pred             -----eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEc
Confidence                 11111111 255778888899999999999987766544321100   0011111 2 46778888899999998


Q ss_pred             ccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC--CCCeEEEe
Q psy988          191 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP--GEDKILVT  268 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~  268 (408)
                      +++.........                     .|.+..-                   ......+.-+|  .+..++++
T Consensus       208 ~tG~~~W~~~~~---------------------~~~g~~~-------------------~~~~~~~~~~p~~~~~~vy~~  247 (377)
T TIGR03300       208 QTGQPLWEQRVA---------------------LPKGRTE-------------------LERLVDVDGDPVVDGGQVYAV  247 (377)
T ss_pred             cCCCEeeeeccc---------------------cCCCCCc-------------------hhhhhccCCccEEECCEEEEE
Confidence            776433221000                     0000000                   00000000000  24567778


Q ss_pred             cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeec
Q psy988          269 SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  348 (408)
Q Consensus       269 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~  348 (408)
                      +.+|.++.||..+++.+-......    ..  ....++..+++++.+|.++.+|..++......         ..+.  .
T Consensus       248 ~~~g~l~a~d~~tG~~~W~~~~~~----~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~---------~~~~--~  310 (377)
T TIGR03300       248 SYQGRVAALDLRSGRVLWKRDASS----YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKN---------DELK--Y  310 (377)
T ss_pred             EcCCEEEEEECCCCcEEEeeccCC----cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEcc---------cccc--C
Confidence            889999999999998766554211    11  12235678888889999999999887322110         0000  1


Q ss_pred             cceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccccc
Q psy988          349 AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       349 ~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                      ....+...                  .+..|++++.||.|+++|..+++....+++
T Consensus       311 ~~~ssp~i------------------~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       311 RQLTAPAV------------------VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             CccccCEE------------------ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            11112222                  345788889999999999999987766553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.39  E-value=2.4e-09  Score=102.58  Aligned_cols=272  Identities=11%  Similarity=0.069  Sum_probs=159.8

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC--------------CceeeEEEEEecCCCEEEEEec-CCE
Q psy988           26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG--------------QTKLITAANFCENGKFAVVGSY-DGR   90 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-dg~   90 (408)
                      ..+++++.++.++++-+.++.|.+||.......   .+.+              .-.....+++.++++.|+++.. .+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~---~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV---QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE---EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            357787745667777777889999998654322   1111              1123578899998887666544 568


Q ss_pred             EEEEeccCCeeeEEEEEee----cccc----ccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCc---
Q psy988           91 CIFYTTDQLKYHTQIHVRS----TRGK----NATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGY---  158 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~----~~~~----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  158 (408)
                      |+++|..+...........    ..+.    ...-.....++++|++. .+++.+.++.|++||..++... .+.+.   
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence            9999987754322111000    0000    00012346789999544 4555567889999998776432 11110   


Q ss_pred             ----------cccccceEEEEecCCCEEEE-eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          159 ----------VNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       159 ----------~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                                ........++++|+++.|++ -..++.|++||+.++......              ....+     .++.
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~--------------gg~~~-----~~~~  787 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA--------------GGDPT-----FSDN  787 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE--------------ecccc-----cCcc
Confidence                      01123456899999986554 455789999998653211000              00000     0000


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-----------cceec
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-----------VNVSS  296 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~  296 (408)
                        +......+...     ....-.....++++++|..+++-..+++|++||..++.........           .....
T Consensus       788 --l~~fG~~dG~g-----~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        788 --LFKFGDHDGVG-----SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             --cccccCCCCch-----hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence              00000000000     0011123567889999998888899999999999887655332110           00124


Q ss_pred             eeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          297 QIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       297 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      ...++++++|+.+++-+.++.|++||+.++.
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            5678999999988888899999999998764

>KOG4532|consensus

Probab=99.38  E-value=6.9e-10  Score=84.17  Aligned_cols=250  Identities=12%  Similarity=0.049  Sum_probs=155.6

Q ss_pred             EEEEEcCC----CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccCCe
Q psy988           26 TAICFHPR----DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        26 ~~~~~sp~----~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ..|.|-|.    .-.+||.|+..|...+|...+.+... +....|...|+-+.=.- ..-.+..++.|.++++.+++...
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~-~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s  149 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL-YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS  149 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccce-eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence            34566661    34578999999999999998776543 33444444333222111 12346777888899988887655


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEecCCCEEEEe
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      .........        -.+..+.++++++++++.+....|..|.+.... .+...........-.+..|+.....+|++
T Consensus       150 ~~~~~h~~~--------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~  221 (344)
T KOG4532|consen  150 NKFAVHNQN--------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV  221 (344)
T ss_pred             ccceeeccc--------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE
Confidence            444333221        137889999999999999999999999886532 22221111122224567899999999999


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      ..||++.|||++.......       ....+-..|.+.++.+.|++.|..                              
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~-------~~sstrp~hnGa~R~c~Fsl~g~l------------------------------  264 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMA-------EISSTRPHHNGAFRVCRFSLYGLL------------------------------  264 (344)
T ss_pred             ecCCcEEEEEecccccchh-------hhcccCCCCCCceEEEEecCCCcc------------------------------
Confidence            9999999999986432221       111223446777777777774432                              


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce------eceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV------SSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                         .+|+..-.-+.+.+.|+++++..+.+......      ..+...+|+.++.-+.+.+++ .+.-|++..
T Consensus       265 ---DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  265 ---DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             ---eEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence               23444455678999999998765554332211      224555677666666555544 334454443

>KOG1064|consensus

Probab=99.37  E-value=7.3e-12  Score=117.72  Aligned_cols=199  Identities=15%  Similarity=0.274  Sum_probs=146.5

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      .+-..|.++.-+| ...+.+||+.||.|++|....++.+......+. ..|+.+.|+.+|+.+..+..||.+.+|.+...
T Consensus      2206 ~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             cccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            3667899999999 888999999999999999988876654444454 88999999999999999999999999998722


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe---eCCCeEEEEEccCcccc-eeecCccccccceEEEEecCCCE
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT---SNDSRIRLYDLRDLNLS-CKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                               .......|.....+..|-.  ..++++   +.++.+.+||..-.... ..-..|.  ..++++++.|..+.
T Consensus      2284 ---------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~--~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2284 ---------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD--GGATVLAYAPKHQL 2350 (2439)
T ss_pred             ---------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC--CCceEEEEcCcceE
Confidence                     1112234455667777763  556665   34788999997532211 1114444  44778999999999


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      |++|+.+|.|++||++..+            ..+.++.         +                                
T Consensus      2351 lisggr~G~v~l~D~rqrq------------l~h~~~~---------~-------------------------------- 2377 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQ------------LRHTFQA---------L-------------------------------- 2377 (2439)
T ss_pred             EEecCCcCcEEEeehHHHH------------HHHHhhh---------h--------------------------------
Confidence            9999999999999996421            1111111         1                                


Q ss_pred             eccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                         . ...++++|+..|.++||++....++.+++.
T Consensus      2378 ---~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2378 ---D-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ---h-hhheeeccCcccceEEEEccccchhhcCch
Confidence               1 235688999999999999998877777664

>KOG4190|consensus

Probab=99.37  E-value=4.7e-12  Score=105.55  Aligned_cols=290  Identities=16%  Similarity=0.221  Sum_probs=179.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-----VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      +|...|..+.--. +.+-+++++.|++|++|.++...     .....+.+.|+.+|..+.|-.+-++++++  ||.|.+|
T Consensus       733 GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  733 GHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             CcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            4999999987766 78889999999999999986521     12235788999999999999998888765  8899999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCc---cccccceEEEEe
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGY---VNVSSQIKASFS  170 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~  170 (408)
                      |.--+....+.....   ..+..+.|.|+. +-+...++++ +...+|+++|.+..+....++.-   .....+.+++..
T Consensus       810 DPFigr~Laq~~dap---k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAP---KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             cccccchhHhhhcCc---ccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            976544333222111   112223444443 1134445555 66889999999988766555422   222446788999


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      +.|++++++-.+|.|.+.|.+++...-.            ..........+                             
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINs------------wrpmecdllql-----------------------------  924 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINS------------WRPMECDLLQL-----------------------------  924 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceecc------------CCcccchhhhh-----------------------------
Confidence            9999999999999999999987643211            11000000000                             


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEE-EEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRL-YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                             -.|..+.++....|.++.+ |..-++....+.+....+..    -.-.-|.-|++......+.+|.-......
T Consensus       925 -------aapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah----flqsvgpSLV~a~~Gn~lgVYad~a~~ha  993 (1034)
T KOG4190|consen  925 -------AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH----FLQSVGPSLVTAQNGNILGVYADSAELHA  993 (1034)
T ss_pred             -------cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh----hhhccCceeEEeccCcEEEEEecchhhhh
Confidence                   0233445666677788888 88777766555443322111    01113555666666667777754332222


Q ss_pred             ccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988          330 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV  390 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i  390 (408)
                      .+.+.+.+      -....+..++++--|                -..-+..|...|.|++
T Consensus       994 ~stitKiR------~d~f~G~lTala~LP----------------LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  994 ESTITKIR------PDEFPGTLTALAPLP----------------LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             hhhhcccc------ccccCCccceeeecc----------------ccchhhccCCCCceee
Confidence            11111111      112345677888888                5666667777787765

>KOG1064|consensus

Probab=99.36  E-value=9e-12  Score=117.14  Aligned_cols=195  Identities=13%  Similarity=0.232  Sum_probs=147.0

Q ss_pred             CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeee
Q psy988          118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  197 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  197 (408)
                      ..+.++.-+|...+.++|+.||.+++|....++.+..+..... ..+..+.|+.+|+.+..+..||.+.+|...      
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~------ 2281 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS------ 2281 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC------
Confidence            4688888899999999999999999999998888887766555 678889999999999999999999999875      


Q ss_pred             eecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe---cCCCeE
Q psy988          198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT---SNDSRI  274 (408)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i  274 (408)
                             ..+....+.|+.....+.|-.                                     ..++++   +.++.+
T Consensus      2282 -------pk~~~s~qchnk~~~Df~Fi~-------------------------------------s~~~tag~s~d~~n~ 2317 (2439)
T KOG1064|consen 2282 -------PKPYTSWQCHNKALSDFRFIG-------------------------------------SLLATAGRSSDNRNV 2317 (2439)
T ss_pred             -------CcceeccccCCccccceeeee-------------------------------------hhhhccccCCCCCcc
Confidence                   233445566666666666543                                     123332   567889


Q ss_pred             EEEEcCCCee-eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEE
Q psy988          275 RLYDLRDLNL-SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  353 (408)
Q Consensus       275 ~i~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  353 (408)
                      .+||..-... -..-..|.+  .++++++-|.-+.|++|+.+|.|++||++..            ++++.++.       
T Consensus      2318 ~lwDtl~~~~~s~v~~~H~~--gaT~l~~~P~~qllisggr~G~v~l~D~rqr------------ql~h~~~~------- 2376 (2439)
T KOG1064|consen 2318 CLWDTLLPPMNSLVHTCHDG--GATVLAYAPKHQLLISGGRKGEVCLFDIRQR------------QLRHTFQA------- 2376 (2439)
T ss_pred             cchhcccCcccceeeeecCC--CceEEEEcCcceEEEecCCcCcEEEeehHHH------------HHHHHhhh-------
Confidence            9999643221 111244444  7789999999999999999999999999875            33333332       


Q ss_pred             EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                        +.                 ...++++|+..|.++||++........+|
T Consensus      2377 --~~-----------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 --LD-----------------TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             --hh-----------------hhheeeccCcccceEEEEccccchhhcCc
Confidence              32                 34689999999999999998876555544

>KOG0280|consensus

Probab=99.30  E-value=2.1e-09  Score=82.66  Aligned_cols=184  Identities=12%  Similarity=0.158  Sum_probs=120.0

Q ss_pred             ceEEEEeccCCeeEe--EEE--eCCceEEEEEcC--CCCC-EEEEEeCCCcEEEEecCCCCce-eeeeecCCce---eeE
Q psy988            3 KTVRLWHISRKECLC--CFQ--HIDFVTAICFHP--RDDR-YFLSGSLDGKLRLWNIPDKKVA-VWNEVEGQTK---LIT   71 (408)
Q Consensus         3 g~i~vwd~~~~~~~~--~~~--h~~~v~~~~~sp--~~~~-~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~~---~v~   71 (408)
                      |.+.+|++...+...  +++  -...+..|.|.-  .++. .++-+-.+|.|.++........ .+..+....-   ...
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            678888887665544  222  345567777753  3555 5666777899999987654322 1122222111   245


Q ss_pred             EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCc-
Q psy988           72 AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDL-  149 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-  149 (408)
                      ++.|++.+..++++-.+|.+.+-+.....      +........|.-+.....|+.. .+.+++|+.|+.+..||++-. 
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEMV------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecceee------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence            77889999999999999999855544332      2333334456667888888764 457788999999999999932 


Q ss_pred             ccceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccc
Q psy988          150 NLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                      +.+.. ....+...|.++.-+| .+.+|++|+.|-.|++||.++-
T Consensus       200 ~~i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  200 TFIWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             ceeee-cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence            22222 1122334466776665 6789999999999999999853

>KOG3914|consensus

Probab=99.29  E-value=1.9e-10  Score=92.13  Aligned_cols=106  Identities=14%  Similarity=0.179  Sum_probs=81.2

Q ss_pred             cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccccee-eeee
Q psy988          269 SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAH  347 (408)
Q Consensus       269 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~h  347 (408)
                      +....+.+|....+.+. ..-+|-  ..++.++|+||+++|+++..|..|++-.....            -.+.. .-||
T Consensus       129 gD~~~~di~s~~~~~~~-~~lGhv--Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~------------f~IesfclGH  193 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCE-PILGHV--SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------------FVIESFCLGH  193 (390)
T ss_pred             CCceeeeeecccccCcc-hhhhhh--hhhheeeecCCCCEEEEecCCceEEEEecCcc------------cchhhhcccc
Confidence            44455666665554333 233443  47889999999999999999999999877653            22222 3479


Q ss_pred             ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccccccc
Q psy988          348 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVSA  406 (408)
Q Consensus       348 ~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~s~  406 (408)
                      ..-|..++.-+                 +..|+|+|.|++|++||+.+++...+++++.
T Consensus       194 ~eFVS~isl~~-----------------~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s  235 (390)
T KOG3914|consen  194 KEFVSTISLTD-----------------NYLLLSGSGDKTLRLWDITSGKLLDTCDLSS  235 (390)
T ss_pred             Hhheeeeeecc-----------------CceeeecCCCCcEEEEecccCCcccccchhH
Confidence            99999999986                 5679999999999999999999998877654

>KOG2041|consensus

Probab=99.29  E-value=2.9e-10  Score=97.96  Aligned_cols=242  Identities=12%  Similarity=0.109  Sum_probs=163.3

Q ss_pred             ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE-------EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ-------IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      .....++.|+.+..++++|+.||.+++..+.+......       ..+.......+|...|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            34578999999999999999999999998875432211       11223344567889999999999999999999999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      .|.+|-+-.+.-...+....+.+.+.+++|..||..+.....||.|.+=.+.... .+.          +.+        
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg----------KeL--------  154 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG----------KEL--------  154 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc----------hhc--------
Confidence            9999999988877777666777778899999999999999999988765543210 000          000        


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-----e--eeeEEeec-
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-----N--LSCKYKGY-  291 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~--~~~~~~~~-  291 (408)
                                                   .+.....+.|++|.+.++.+-.+|.+.+||....     +  +.....+. 
T Consensus       155 -----------------------------kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~  205 (1189)
T KOG2041|consen  155 -----------------------------KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF  205 (1189)
T ss_pred             -----------------------------chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence                                         0111223445555555666777889999986532     1  11111110 


Q ss_pred             c-ceeceeEEEE--------cCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchh
Q psy988          292 V-NVSSQIKASF--------SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  362 (408)
Q Consensus       292 ~-~~~~v~~~~~--------s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  362 (408)
                      . .+..+..+.|        -||...|+++-.+|.+.|..-.+...           ++  +....-.|....|+|    
T Consensus       206 s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-----------Pv--v~dtgm~~vgakWnh----  268 (1189)
T KOG2041|consen  206 SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-----------PV--VVDTGMKIVGAKWNH----  268 (1189)
T ss_pred             cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-----------Ce--EEecccEeecceecC----
Confidence            0 0112333343        35888999999999999887665421           11  222335688999999    


Q ss_pred             hhhccCCCCCCCcccEEEEEecC
Q psy988          363 IIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       363 ~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                                  +|..||.+|.|
T Consensus       269 ------------~G~vLAvcG~~  279 (1189)
T KOG2041|consen  269 ------------NGAVLAVCGND  279 (1189)
T ss_pred             ------------CCcEEEEccCc
Confidence                        77777777654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=8.5e-09  Score=88.96  Aligned_cols=220  Identities=15%  Similarity=0.081  Sum_probs=121.6

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE-EEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCe
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF-AVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI  120 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v  120 (408)
                      ..|.+-|.+.....   .+.... ......|+|||+. ++..+.+   ..|.++|+.+++......         ..+..
T Consensus       169 ~~l~~~d~dg~~~~---~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---------~~g~~  235 (419)
T PRK04043        169 SNIVLADYTLTYQK---VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---------SQGML  235 (419)
T ss_pred             ceEEEECCCCCcee---EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---------CCCcE
Confidence            35666666555433   232233 6788999999985 5544443   568888988765433221         11345


Q ss_pred             EEEeeCCCCCeEEEee-C--CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeeccce
Q psy988          121 SGIEPMPGEDKILVTS-N--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDY  194 (408)
Q Consensus       121 ~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~  194 (408)
                      ....|+|||+.++... .  +..|.++|+.+++... +.....  ......|+|||+.|+..+. .+  .|++.|+.++.
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            5678999998887653 2  4578888988776433 332221  1224579999998877654 23  56666665432


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                      ....           ...+..    ...|+|+|+.++.......                     ++     .+.....|
T Consensus       313 ~~rl-----------t~~g~~----~~~~SPDG~~Ia~~~~~~~---------------------~~-----~~~~~~~I  351 (419)
T PRK04043        313 VEQV-----------VFHGKN----NSSVSTYKNYIVYSSRETN---------------------NE-----FGKNTFNL  351 (419)
T ss_pred             eEeC-----------ccCCCc----CceECCCCCEEEEEEcCCC---------------------cc-----cCCCCcEE
Confidence            2100           000100    1256666665543211000                     00     00011468


Q ss_pred             EEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC---ceEEEeeccc
Q psy988          275 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHH  325 (408)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~  325 (408)
                      .+.|+.+++....... .   ......|+|||+.|+....+   ..+.+.++..
T Consensus       352 ~v~d~~~g~~~~LT~~-~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        352 YLISTNSDYIRRLTAN-G---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEECCCCCeEECCCC-C---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            8888887765333222 1   12257999999988765433   2466666654

>KOG4190|consensus

Probab=99.27  E-value=1e-10  Score=97.74  Aligned_cols=261  Identities=14%  Similarity=0.181  Sum_probs=162.9

Q ss_pred             CceEEEEeccC-------CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEE
Q psy988            2 DKTVRLWHISR-------KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAA   73 (408)
Q Consensus         2 Dg~i~vwd~~~-------~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~   73 (408)
                      |++|++|.++.       ..+..+++ |+.+|.++.|-. +.++++++  ||-|.+||.--+............+.+..+
T Consensus       756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~i  832 (1034)
T KOG4190|consen  756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNI  832 (1034)
T ss_pred             CceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceeecccccchhHhhhcCcccCCCcee
Confidence            88999999853       23566666 999999999998 77777765  789999998766544211111122223333


Q ss_pred             EEecC--CCEEEE-EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           74 NFCEN--GKFAVV-GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        74 ~~~~~--~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      ..-++  ...+.. ++...+++++|.+..+...........+.   ...+.+++..+.|+.++++-.+|.|.+.|.++|+
T Consensus       833 kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P---na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  833 KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP---NALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             EecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC---chheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            33333  334444 47789999999999887776665543333   2468999999999999999999999999999999


Q ss_pred             cceeecCccccccceEEEEecCCCEEEEeecCceEEE-eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI-WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      .+..+....-.  ...++ .|..+.++....|..+.+ |-.-.+...++..+++.  +...+                  
T Consensus       910 vINswrpmecd--llqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe--pahfl------------------  966 (1034)
T KOG4190|consen  910 VINSWRPMECD--LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE--PAHFL------------------  966 (1034)
T ss_pred             eeccCCcccch--hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc--chhhh------------------
Confidence            87766543322  22222 345556776667777777 75543322221111000  00000                  


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC----CeeeeEEeeccceeceeEEEEcCC
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD----LNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                                                   -.-|..+++......+.+|--..    ...+.++....-.+..++++.-|-
T Consensus       967 -----------------------------qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen  967 -----------------------------QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred             -----------------------------hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence                                         00133466666667777774211    111222333333446677888887


Q ss_pred             CCEEEEecCCceEEE
Q psy988          306 GKYIVSGSENQCIYI  320 (408)
Q Consensus       306 ~~~l~~~~~dg~i~i  320 (408)
                      ..-+..|++.|.|.+
T Consensus      1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cchhhccCCCCceee
Confidence            777778888888875

>KOG0882|consensus

Probab=99.27  E-value=1.7e-10  Score=93.79  Aligned_cols=266  Identities=15%  Similarity=0.181  Sum_probs=179.5

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEec-CCEEEEEec
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSY-DGRCIFYTT   96 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~   96 (408)
                      +-|.+.|+.+.-..  .+++.+++.||.++.|.-.. ........+..|...|.+++.+-++..+.+.+. |..++++|+
T Consensus         6 ymhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             hcccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            44888888887764  67999999999999998655 333333567788899999999999999999777 999999999


Q ss_pred             cCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-C-eEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988           97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-D-KILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      ++.....-+.+....+      .+ ++..+|.. . .++++ -.++.+.++|-....+...+....+..++..+.+.+-+
T Consensus        84 En~DminmiKL~~lPg------~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPG------FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             eccchhhhcccccCCC------ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence            9876654444333221      11 12222221 1 33333 45789999998765544333333444568889999999


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      ..+++....|.|.-|........                    +=..+.|.+..+.            ...-+......+
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qf--------------------Pr~~l~~~~K~eT------------dLy~f~K~Kt~p  204 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQF--------------------PRTNLNFELKHET------------DLYGFPKAKTEP  204 (558)
T ss_pred             cceeeccccceeEeecCCCcccC--------------------ccccccccccccc------------hhhcccccccCc
Confidence            99999999999999987531100                    0011112211111            111122344567


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-------------------------------cceeceeEEEE
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-------------------------------VNVSSQIKASF  302 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------------~~~~~v~~~~~  302 (408)
                      .++.|+|++..+.+-+.|.+|++++.+++++.+.+...                               .+...-+.++|
T Consensus       205 ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f  284 (558)
T KOG0882|consen  205 TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF  284 (558)
T ss_pred             cceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence            78889999999999999999999999998766544210                               01122345789


Q ss_pred             cCCCCEEEEecCCceEEEeecccc
Q psy988          303 SHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       303 s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ...|++|+-|+-=| |++.++.++
T Consensus       285 des~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  285 DESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             cCCCCEEEeeccee-EEEEEeecC
Confidence            99999999887654 788888776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.26  E-value=4.6e-08  Score=78.85  Aligned_cols=183  Identities=17%  Similarity=0.096  Sum_probs=113.1

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEE--EcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAIC--FHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~--~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      +|+|..||..+|+.+-............  ..+ ++.++++++.++.+..||..+++..-...+.......   . ..++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~-~~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P-VVDG   76 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E-EEET
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---e-eecc
Confidence            7899999999999999887532232222  333 4566777789999999999999876433442221122   1 2345


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ..++.++.++.+..+|..+++..............    ..........++.++++..++.|..+|+++|+.+.......
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            56777778899999999999887663222211111    11112222237888999889999999999999877765533


Q ss_pred             cccc--------ceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988          160 NVSS--------QIKASFSHDGKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       160 ~~~~--------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                      ....        ...-....++ .++.+..++.+.-+|..++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE  194 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence            2211        0111122234 66666667753333877654

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.25  E-value=1.8e-08  Score=77.82  Aligned_cols=239  Identities=10%  Similarity=0.064  Sum_probs=131.5

Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      ++.+.+|+.||.. .|..|.|-..++.-..........   ......=..++|+||+..|+.+...|+|+++|+...+ +
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVp---kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-l   77 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVP---KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-L   77 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecC---CCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-e
Confidence            4567788877765 677777776654322221111111   1112246779999999999999999999999997533 3


Q ss_pred             eeecCccc-----cccceEEEEecC------CCEEEEeecCceEEEeeecccee-eeeecccCCCccccccccccceEEE
Q psy988          153 CKYKGYVN-----VSSQIKASFSHD------GKYIVSGSENQCIYIWKTHHDYA-KFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       153 ~~~~~~~~-----~~~~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      ..+.....     ...+..+.|.+-      ...|++-..+|.++-|-+..+.. .+.     ..............|.+
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~-----e~hsfsf~~~yp~Gi~~  152 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ-----ENHSFSFSSHYPHGINS  152 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce-----eeEEEEecccCCCceeE
Confidence            33322111     112333444331      12356666677777666532110 000     00011111234668999


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE--EecCCCe------EEEEEcCCCeeeeEEeecc
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL--VTSNDSR------IRLYDLRDLNLSCKYKGYV  292 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~d~~------i~i~d~~~~~~~~~~~~~~  292 (408)
                      +.++|..+.+++++........   .......+++-.+..+..+..  +...|+.      -.+|.+-+.+.....  ..
T Consensus       153 ~vy~p~h~LLlVgG~~~~~~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~  227 (282)
T PF15492_consen  153 AVYHPKHRLLLVGGCEQNQDGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQ  227 (282)
T ss_pred             EEEcCCCCEEEEeccCCCCCcc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc--cc
Confidence            9999999988877665553222   112223333333322222211  2222221      233333332221111  12


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ....|..|..||||+.||+...+|.|.+|++..-
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            3447889999999999999999999999999875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=9.3e-09  Score=88.74  Aligned_cols=198  Identities=14%  Similarity=0.115  Sum_probs=119.8

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCE-EEEEeCC---CcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRY-FLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~-l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .|.+-|.+.......... +.+....|+| +++. ++..+.+   ..|.++|+.+++...+.   ...+......|+|||
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG  244 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDG  244 (419)
T ss_pred             eEEEECCCCCceeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCC
Confidence            455556654443333334 4788999999 8874 5544443   56999999888765332   344455667899999


Q ss_pred             CEEEEEe-cC--CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CC--eEEEEEccCcccce
Q psy988           80 KFAVVGS-YD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DS--RIRLYDLRDLNLSC  153 (408)
Q Consensus        80 ~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~  153 (408)
                      +.++... .+  ..|.++++.+++... +.  ..      ........|+|||+.|+..+. .+  .|+++|+.+++..+
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT--~~------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r  315 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT--NY------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ  315 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEE-cc--cC------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence            8776543 33  467777877664321 11  10      111234579999998887754 22  68888888776543


Q ss_pred             eecCccccccceEEEEecCCCEEEEeecC---------ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSEN---------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      ....  ...   ...|+|+|++|+.....         ..|.+.|+.++...             .+... .......|+
T Consensus       316 lt~~--g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-------------~LT~~-~~~~~p~~S  376 (419)
T PRK04043        316 VVFH--GKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-------------RLTAN-GVNQFPRFS  376 (419)
T ss_pred             CccC--CCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-------------ECCCC-CCcCCeEEC
Confidence            3221  111   24799999998876543         26777777654321             11111 112247899


Q ss_pred             CCcceeeeec
Q psy988          225 PCPELIIAQM  234 (408)
Q Consensus       225 ~~~~~~~~~~  234 (408)
                      |||+.++...
T Consensus       377 PDG~~I~f~~  386 (419)
T PRK04043        377 SDGGSIMFIK  386 (419)
T ss_pred             CCCCEEEEEE
Confidence            9998887653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.23  E-value=1.3e-07  Score=76.34  Aligned_cols=228  Identities=16%  Similarity=0.163  Sum_probs=139.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe-cCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988           27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC-ENGKFAVVGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      ++.|.+.++.++++--..+.|..|+..++....   .....  ...+.+. +++. |+.+...+ +.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV---IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE---EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE---EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEe
Confidence            567887567777776678999999998876542   22222  6677777 5654 55555544 555598887654444


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSND--------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      .....   .......+.+++.|+|+..++....        |.|..++.. ++.......   ......++|+|+++.|+
T Consensus        77 ~~~~~---~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   77 DLPDG---GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG---LGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEETT---CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE---ESSEEEEEEETTSSEEE
T ss_pred             eccCC---CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC---cccccceEECCcchhee
Confidence            33211   1123478899999999866665432        557777777 443333322   23356799999999876


Q ss_pred             E-eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          178 S-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       178 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      . -+..+.|..+++.........                   ..+....                     ......+..+
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~-------------------~~~~~~~---------------------~~~~g~pDG~  189 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSN-------------------RRVFIDF---------------------PGGPGYPDGL  189 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEE-------------------EEEEEE----------------------SSSSCEEEEE
T ss_pred             ecccccceeEEEeccccccceee-------------------eeeEEEc---------------------CCCCcCCCcc
Confidence            5 456778888887532211000                   0000000                     0111345667


Q ss_pred             ccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE-cCCCCEEEE
Q psy988          257 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF-SHDGKYIVS  311 (408)
Q Consensus       257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~  311 (408)
                      ++..+|+..++....+.|.++|.+ |+.+..+.....  .+++++| .++.+.|+.
T Consensus       190 ~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  190 AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEE
T ss_pred             eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEE
Confidence            777788877777788999999987 888888776533  6789999 466666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.19  E-value=2.9e-07  Score=79.93  Aligned_cols=294  Identities=10%  Similarity=0.052  Sum_probs=166.3

Q ss_pred             CceEEEEeccCCeeEeEEEeCC--ce---------E-EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee
Q psy988            2 DKTVRLWHISRKECLCCFQHID--FV---------T-AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~--~v---------~-~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   69 (408)
                      +|.|.-+|.++|+.+-......  .+         . .+..   .+..++.++.+|.+.-+|.++++..-...+.+   .
T Consensus        78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~  151 (394)
T PRK11138         78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---E  151 (394)
T ss_pred             CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcccccCCC---c
Confidence            4567777888888776554221  00         0 1122   24457777888999999999998763222222   1


Q ss_pred             eEE-EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc-cccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           70 ITA-ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG-KNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        70 v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      +.+ ...  .+..++.++.+|.+..+|.++++............ ......++.      .+..++.++.+|.+..+|..
T Consensus       152 ~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        152 ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT------AFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE------ECCEEEEEcCCCEEEEEEcc
Confidence            211 111  24467778889999999999998766654321000 000011111      13467778888999999999


Q ss_pred             CcccceeecCcccc--c---cceEEEEec--CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          148 DLNLSCKYKGYVNV--S---SQIKASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       148 ~~~~~~~~~~~~~~--~---~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      +++...........  .   ....+..+|  .+..+++++.+|.++.+|..++.......          + ..   ...
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----------~-~~---~~~  289 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----------Y-GS---VND  289 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----------C-CC---ccC
Confidence            98876554321110  0   000011122  34567777788999999987764433210          0 00   000


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEE
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  300 (408)
                                                           ....+..++.++.+|.+..+|..+++.+-........ ...+.
T Consensus       290 -------------------------------------~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp  331 (394)
T PRK11138        290 -------------------------------------FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAP  331 (394)
T ss_pred             -------------------------------------cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCC
Confidence                                                 0112456777788999999999998765443221110 11111


Q ss_pred             EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE-EEEecCCchhhhhccCCCCCCCcccEE
Q psy988          301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT-CAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      ..  .+.+|+.++.+|.+++.|..+++            .+....-....+. ...+                  .+..|
T Consensus       332 ~v--~~g~l~v~~~~G~l~~ld~~tG~------------~~~~~~~~~~~~~s~P~~------------------~~~~l  379 (394)
T PRK11138        332 VL--YNGYLVVGDSEGYLHWINREDGR------------FVAQQKVDSSGFLSEPVV------------------ADDKL  379 (394)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCC------------EEEEEEcCCCcceeCCEE------------------ECCEE
Confidence            11  35678888999999999998873            3222222222222 1222                  23467


Q ss_pred             EEEecCCeEEEEeC
Q psy988          380 VSADFNGVIRVFLN  393 (408)
Q Consensus       380 ~s~~~dg~v~iw~~  393 (408)
                      ..++.||.|+.+++
T Consensus       380 ~v~t~~G~l~~~~~  393 (394)
T PRK11138        380 LIQARDGTVYAITR  393 (394)
T ss_pred             EEEeCCceEEEEeC
Confidence            77889999998875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.18  E-value=2.6e-07  Score=73.74  Aligned_cols=237  Identities=12%  Similarity=0.086  Sum_probs=140.4

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCc-EEEEecCCCCceeeeeecCCcee--eEEEEEecCCCEEEEEec-----CCEEEEEe
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGK-LRLWNIPDKKVAVWNEVEGQTKL--ITAANFCENGKFAVVGSY-----DGRCIFYT   95 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~iw~   95 (408)
                      ....++.+|..+..++.+-.-|+ ..+||..+++...  .+....+.  --.-.|++||++|++.-.     .|.|-|||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~--~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ--RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee--EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            44568888866666777766665 6789999887663  22221111  123579999999998644     48999999


Q ss_pred             cc-CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee------------------CCCeEEEEEccCcccceeec
Q psy988           96 TD-QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS------------------NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        96 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~  156 (408)
                      .. +.+.+.++.        .+.-....+.+.||++.|+++.                  .+-.+...|..+++.+.+..
T Consensus        84 ~~~~~~ri~E~~--------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~  155 (305)
T PF07433_consen   84 AARGYRRIGEFP--------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE  155 (305)
T ss_pred             CcCCcEEEeEec--------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence            98 333322222        2223455678899998888762                  12245666777888776643


Q ss_pred             C--ccccccceEEEEecCCCEEEEeecCce-------EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          157 G--YVNVSSQIKASFSHDGKYIVSGSENQC-------IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       157 ~--~~~~~~~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                      .  ..+..++..+++.++|..++..-..|.       +.+++....                        ...+..    
T Consensus       156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~------------------------~~~~~~----  207 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA------------------------LRLLPA----  207 (305)
T ss_pred             cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc------------------------ceeccC----
Confidence            3  334456778888888865554433331       111111100                        000000    


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  306 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  306 (408)
                                    ...........+-+|++++++.++++ +-..+.+.+||..+++.+......    .+..++-.+++
T Consensus       208 --------------p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~  269 (305)
T PF07433_consen  208 --------------PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG  269 (305)
T ss_pred             --------------ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc
Confidence                          00011133455666777777766644 556789999999999988766543    33456666666


Q ss_pred             CEEEEecCCceE
Q psy988          307 KYIVSGSENQCI  318 (408)
Q Consensus       307 ~~l~~~~~dg~i  318 (408)
                       ++++.+ .|.+
T Consensus       270 -f~~ssG-~G~~  279 (305)
T PF07433_consen  270 -FLVSSG-QGQL  279 (305)
T ss_pred             -eEEeCC-CccE
Confidence             555544 4443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.17  E-value=8.1e-08  Score=74.26  Aligned_cols=242  Identities=10%  Similarity=0.077  Sum_probs=138.0

Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEecCCCCceee---eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988           28 ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW---NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      ++.++ +|++||.- .|..|.|-..++.-....   +..+.....=+.++||||+..||.+...|+|+++|+........
T Consensus         3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            56677 88877766 567787776654321111   12222233457899999999999999999999999987543322


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCC------CeEEEeeCCCeEEEEEccCcc-----cceeecCc-cccccceEEEEecC
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGE------DKILVTSNDSRIRLYDLRDLN-----LSCKYKGY-VNVSSQIKASFSHD  172 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~  172 (408)
                      .....  ........|..+.|.+..      ..|++-...|.++-|-+..+.     ....+... ..+..+.++.++|.
T Consensus        81 ~p~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   81 PPAMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             Ccccc--cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            11111  112233567777776532      256666777888877763321     11222211 11345778999999


Q ss_pred             CCEEEEeecCc-----------eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          173 GKYIVSGSENQ-----------CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       173 ~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      .+.|++|+...           -+.-|.+-.+.+-.......           ...+...   +....+.    ......
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~-----------~~~~~~~---~~~~~~~----~~~~~~  220 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS-----------EDDITAS---SKRRGLL----RIPSFK  220 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc-----------Ccccccc---cccccee----ecccee
Confidence            88888776421           24445543332222211100           0000000   0000000    000000


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  291 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  291 (408)
                      ...........|..|..||||+.|++...+|.|.+|++.+.++...+...
T Consensus       221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            00011234567899999999999999999999999999998887776644

>KOG3914|consensus

Probab=99.15  E-value=1.7e-09  Score=86.85  Aligned_cols=164  Identities=14%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             eEEEEEecCCCEEEEEecCCEEEEEeccCCeee-EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---CeEEEEE
Q psy988           70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH-TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---SRIRLYD  145 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d  145 (408)
                      ...+..++.++++|.+..+....+++....... ........      ...-+.+.|..+.....++..-   ..+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v------~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV------PKRPTAISFIREDTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec------ccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence            445566788999999988888778877655431 11111111      1133445555555555555443   4455555


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc-cccccceEEEEEEe
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFA  224 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~  224 (408)
                      ...+.. ..+.+|.  ..++.++++||+++|+++..|..|++-.....            ..+.. ..+|..-|..++.-
T Consensus       139 ~~~~~~-~~~lGhv--Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~------------f~IesfclGH~eFVS~isl~  203 (390)
T KOG3914|consen  139 ADSGRC-EPILGHV--SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------------FVIESFCLGHKEFVSTISLT  203 (390)
T ss_pred             ccccCc-chhhhhh--hhhheeeecCCCCEEEEecCCceEEEEecCcc------------cchhhhccccHhheeeeeec
Confidence            444333 2334444  34788999999999999999999999766421            11122 23455555555544


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      +                                    +..|++++.|+++++||+.+|+.+..+..
T Consensus       204 ~------------------------------------~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  204 D------------------------------------NYLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             c------------------------------------CceeeecCCCCcEEEEecccCCcccccch
Confidence            3                                    33478999999999999999998877654

>KOG4714|consensus

Probab=99.15  E-value=3.5e-09  Score=80.07  Aligned_cols=201  Identities=10%  Similarity=0.140  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCce----------eeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA----------VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      |+.+.++  ....|+++..++.+.......+.+.          +...+..|.++-.+-..+-.++.++++..||.+.++
T Consensus        39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            6667776  3556777777766665554332211          112333343333333334456779999999999999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-----CCCeEEEEEccCcccceeecCccccccceEEEE
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-----NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF  169 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  169 (408)
                      +.+........ ...      ....-.+.++...++.+.++.     .-+..+.|+++..+....  .+.....+.+++-
T Consensus       117 s~~~~~~~~~~-i~~------~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~--~~~~~~~v~~l~~  187 (319)
T KOG4714|consen  117 STDKDLALMSR-IPS------IHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP--SKKALDAVTALCS  187 (319)
T ss_pred             echHHHhhhhh-ccc------ccccccccceeecccEEecCCcceEeeccceeeecccccccccc--cccccccchhhhC
Confidence            98762211100 000      001111222223344444432     123456666654332211  1112223667788


Q ss_pred             ecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC
Q psy988          170 SHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA  248 (408)
Q Consensus       170 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (408)
                      +|.. +.+++|+.||.+-+||.+..           ..+...+..|+.++..+-|+|.                      
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~-----------~~p~S~l~ahk~~i~eV~FHpk----------------------  234 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNV-----------AMPVSLLKAHKAEIWEVHFHPK----------------------  234 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEcccc-----------cchHHHHHHhhhhhhheeccCC----------------------
Confidence            8855 45677889999999999753           3344566777777777777775                      


Q ss_pred             CCceeeeeccCCCCCeEEEecCCCeEEEEEcCC
Q psy988          249 TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  281 (408)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  281 (408)
                                  ++..|+++++||.+.-||..+
T Consensus       235 ------------~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  235 ------------NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ------------CchheeEecCCCcEEEEcCCC
Confidence                        345688999999999999775

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.15  E-value=4.5e-07  Score=73.28  Aligned_cols=213  Identities=14%  Similarity=0.107  Sum_probs=127.3

Q ss_pred             EEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988           71 TAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  149 (408)
Q Consensus        71 ~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  149 (408)
                      .++.|.+ ++.++++-...+.|..|+..+........           .....+++...+..++++...+ +.++|+.++
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-----------~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g   70 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-----------PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTG   70 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-----------SSEEEEEEECTTSEEEEEETTC-EEEEETTTT
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-----------CCCceEEEEccCCEEEEEEcCc-eEEEecCCC
Confidence            3567887 67777776678999999998876433110           1366777773346666666644 566698887


Q ss_pred             ccceeecC---ccccccceEEEEecCCCEEEEeecC--------ceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988          150 NLSCKYKG---YVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  218 (408)
Q Consensus       150 ~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (408)
                      +.......   .........+++.++|+..++....        |.|+.++.. +..             ..+.      
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-------------~~~~------  130 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-------------TVVA------  130 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-------------EEEE------
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-------------EEEe------
Confidence            65443332   1134557789999999866654432        345444443 110             0000      


Q ss_pred             EEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCCee----eeEEeec-c
Q psy988          219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNL----SCKYKGY-V  292 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~----~~~~~~~-~  292 (408)
                                                   ..-.....++|+|+++.|+ +-+..+.|..|++.....    ...+... .
T Consensus       131 -----------------------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~  181 (246)
T PF08450_consen  131 -----------------------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG  181 (246)
T ss_dssp             -----------------------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred             -----------------------------cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence                                         0112234566666666554 457788999999863221    1222111 1


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEec
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  357 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  357 (408)
                      .....-.+++..+|++.++....+.|.+++.+ +            +.+..+.-....+++++|.
T Consensus       182 ~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G------------~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  182 GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G------------KLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S------------CEEEEEE-SSSSEEEEEEE
T ss_pred             CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c------------cEEEEEcCCCCCEEEEEEE
Confidence            11235679999999988888788999999987 4            4555555444578999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532|consensus

Probab=99.14  E-value=9.7e-09  Score=78.12  Aligned_cols=183  Identities=13%  Similarity=0.030  Sum_probs=123.5

Q ss_pred             CceEEEEeccCCeeEeEEEeCC--ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeee-eecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQHID--FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN-EVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~--~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~   78 (408)
                      |.++++.+++.+...... |..  .+.++.+++ +++++++.+....|..|.++........ ........-.+..|+..
T Consensus       137 dht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             CcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence            667777777644433332 333  388999999 9999999999999999999775443323 34444556678899999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC--eEEEeeCCCeEEEEEccCcccceeec
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED--KILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ...+|++..||++.|||++...........   ....|.+.+..+.|++.|.  .|+..-.-+.+.+.|++++...+.+.
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss---trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISS---TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcc---cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            999999999999999999976644333222   2234778999999998654  45555556789999999887655443


Q ss_pred             Ccccc------ccceEEEEecCCCEEEEeecCceEEEeee
Q psy988          157 GYVNV------SSQIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       157 ~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      .....      ..+....|+.++.-+.+..++ .+.-|++
T Consensus       292 i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni  330 (344)
T KOG4532|consen  292 IPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNI  330 (344)
T ss_pred             cCccccccccccccccccccCCCcccccccch-hhheeec
Confidence            32221      224445566666555555443 2444444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=99.11  E-value=1.3e-06  Score=70.73  Aligned_cols=274  Identities=14%  Similarity=0.161  Sum_probs=156.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecCC-c---
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEGQ-T---   67 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~---   67 (408)
                      .+.+.|+|.++++.+-.+.- +-.-.+..+| +++.+++++          ..-.|.+||..+-.......+... .   
T Consensus        16 ~~rv~viD~d~~k~lGmi~~-g~~~~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   16 TSRVYVIDADSGKLLGMIDT-GFLGNVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV   93 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEE-ESSEEEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred             cceEEEEECCCCcEEEEeec-ccCCceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence            45789999999998777652 1223366899 888888754          234699999988765433344432 1   


Q ss_pred             -eeeEEEEEecCCCEEEEEecC--CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988           68 -KLITAANFCENGKFAVVGSYD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        68 -~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  144 (408)
                       .....++++.||++++.....  ..|.|-|+...+....+...          .+..+--.+ ++.|.+-|.||.+.-.
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------GC~~iyP~~-~~~F~~lC~DGsl~~v  162 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------GCWLIYPSG-NRGFSMLCGDGSLLTV  162 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----------SEEEEEEEE-TTEEEEEETTSCEEEE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----------CEEEEEecC-CCceEEEecCCceEEE
Confidence             122345788899988876543  57999999998876655421          122222222 3567788899999999


Q ss_pred             Ecc-CcccceeecC---ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          145 DLR-DLNLSCKYKG---YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       145 d~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      .+. .|+...+...   .........-++...+..++--+.+|.|+-.|+......+...       +..+.....   .
T Consensus       163 ~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~-------~~~~t~~e~---~  232 (342)
T PF06433_consen  163 TLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP-------WSLLTDAEK---A  232 (342)
T ss_dssp             EETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE-------EESS-HHHH---H
T ss_pred             EECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc-------ccccCcccc---c
Confidence            887 4444322111   1111111223455555566667788999999987654333211       111100000   0


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe---c-----CC--CeEEEEEcCCCeeeeEEee
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT---S-----ND--SRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~-----~d--~~i~i~d~~~~~~~~~~~~  290 (408)
                      -.|.|.|-.+                         +++++..+.|++-   +     .|  ..|.++|+.+++.+..+..
T Consensus       233 ~~WrPGG~Q~-------------------------~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l  287 (342)
T PF06433_consen  233 DGWRPGGWQL-------------------------IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL  287 (342)
T ss_dssp             TTEEE-SSS--------------------------EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred             cCcCCcceee-------------------------eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC
Confidence            0233333322                         1222222222221   1     11  3588999999999999885


Q ss_pred             ccceeceeEEEEcCCCC-EEEE-ecCCceEEEeecccc
Q psy988          291 YVNVSSQIKASFSHDGK-YIVS-GSENQCIYIWKTHHD  326 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~-~l~~-~~~dg~i~iw~~~~~  326 (408)
                      ..   .+.++..+.+.+ +|++ ...++.+.+||..++
T Consensus       288 ~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  288 EH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             CC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            32   456888888776 5544 356899999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2695|consensus

Probab=99.09  E-value=9.2e-10  Score=86.55  Aligned_cols=147  Identities=16%  Similarity=0.302  Sum_probs=111.0

Q ss_pred             EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc
Q psy988          133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  212 (408)
Q Consensus       133 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
                      ++.+.+..+-+-|++++... .+.   ....|.++.|...++.++.|..+|.|..+|++...                 .
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~---sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-----------------q  286 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ---SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-----------------Q  286 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc---cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc-----------------c
Confidence            44556678889999887532 232   23447788899889999999999999999997531                 1


Q ss_pred             cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCee---eeEE
Q psy988          213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNL---SCKY  288 (408)
Q Consensus       213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~  288 (408)
                      +.......+                          -|+..|+++.... ++++|++.+.+|+|++||++.-++   +.++
T Consensus       287 G~~~~a~rl--------------------------yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY  340 (425)
T KOG2695|consen  287 GNGWCAQRL--------------------------YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY  340 (425)
T ss_pred             CCCcceEEE--------------------------EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee
Confidence            111111111                          3556677776666 778899999999999999998777   8889


Q ss_pred             eeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .+|.+...-.-+...+....+++++.|...+||.++.+
T Consensus       341 eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  341 EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            99987666666677888889999999999999999987

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.09  E-value=3.3e-07  Score=73.85  Aligned_cols=229  Identities=15%  Similarity=0.111  Sum_probs=134.7

Q ss_pred             CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEE
Q psy988           44 DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI  123 (408)
Q Consensus        44 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  123 (408)
                      +|.|..||..+++..-...+..-.....+. ..+++..+++++.++.+..||..+++..........         +...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---------~~~~   71 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---------ISGA   71 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---------GGSG
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---------ccce
Confidence            688999999888766433332111112211 233566788888999999999999987666554221         1111


Q ss_pred             eeCCCCCeEEEeeCCCeEEEEEccCcccceee-cCccccc-cceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecc
Q psy988          124 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYVNVS-SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       124 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (408)
                       ....+..+++++.++.|+.+|..+++.+... ....... ..........+..++++..++.|..+|.+++........
T Consensus        72 -~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   72 -PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             -EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             -eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence             1224667788888889999999999988773 3221111 111223333478888888899999999988776544221


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCe-EEEEEcC
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSR-IRLYDLR  280 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~  280 (408)
                      ....        ....+.  .+..                          ....+.+. ++ .++.++.++. +.+ |+.
T Consensus       151 ~~~~--------~~~~~~--~~~~--------------------------~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~  191 (238)
T PF13360_consen  151 GEPR--------GSSPIS--SFSD--------------------------INGSPVIS-DG-RVYVSSGDGRVVAV-DLA  191 (238)
T ss_dssp             STT---------SS--EE--EETT--------------------------EEEEEECC-TT-EEEEECCTSSEEEE-ETT
T ss_pred             CCCC--------CCccee--eecc--------------------------cccceEEE-CC-EEEEEcCCCeEEEE-ECC
Confidence            1000        000000  0000                          00011111 23 5666677775 555 999


Q ss_pred             CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          281 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       281 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +++.+-...  ..  .... ...+++..|+.++.++.|..||+.+++
T Consensus       192 tg~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  192 TGEKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             TTEEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CCCEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            998653222  12  1111 245678888888899999999999873

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.04  E-value=1.9e-07  Score=74.60  Aligned_cols=233  Identities=14%  Similarity=0.127  Sum_probs=145.8

Q ss_pred             CeEEEeeCCC-CCeEEEeeCCC-eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-----CceEEEeeec
Q psy988          119 KISGIEPMPG-EDKILVTSNDS-RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-----NQCIYIWKTH  191 (408)
Q Consensus       119 ~v~~~~~~~~-~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~  191 (408)
                      ....++.+|. ...++.+-.-| ...+||.++++....+....+....=.-+|++||++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            4556788884 44555565544 578899999998877765444322224689999999998744     5789999997


Q ss_pred             cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC--CeEEEec
Q psy988          192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE--DKILVTS  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~  269 (408)
                      .....           +..+..+.-.-..+.+.||++.|++.....                   .-+|+.  ..|=...
T Consensus        86 ~~~~r-----------i~E~~s~GIGPHel~l~pDG~tLvVANGGI-------------------~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   86 RGYRR-----------IGEFPSHGIGPHELLLMPDGETLVVANGGI-------------------ETHPDSGRAKLNLDT  135 (305)
T ss_pred             CCcEE-----------EeEecCCCcChhhEEEcCCCCEEEEEcCCC-------------------ccCcccCceecChhh
Confidence            43322           234444554555677888887666542221                   112221  1122335


Q ss_pred             CCCeEEEEEcCCCeeeeEEee--ccceeceeEEEEcCCCCEEEEecCCc-------eEEEeeccccCccccccccCcccc
Q psy988          270 NDSRIRLYDLRDLNLSCKYKG--YVNVSSQIKASFSHDGKYIVSGSENQ-------CIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       270 ~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      .+..+...|..+|+++.+...  ..+...+..+++.++|..++..-..|       .|.+++.....   ....-    .
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~---~~~~~----p  208 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL---RLLPA----P  208 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc---eeccC----C
Confidence            666788888899988877443  33455788999999988777654333       24444433210   00000    0


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEE-EEEecCCeEEEEeCCCCCCcccccc
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL-VSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                      ...+..-.+.|-++++++                ++.++ +|+-.-|.+.+||..+++.....++
T Consensus       209 ~~~~~~l~~Y~gSIa~~~----------------~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  209 EEQWRRLNGYIGSIAADR----------------DGRLIAVTSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             hHHHHhhCCceEEEEEeC----------------CCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence            011223446688999999                77666 5555678999999999987766554

>KOG2695|consensus

Probab=99.03  E-value=1.1e-09  Score=86.18  Aligned_cols=148  Identities=17%  Similarity=0.265  Sum_probs=115.3

Q ss_pred             EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988           39 LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR  118 (408)
Q Consensus        39 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  118 (408)
                      ++.+.+..|-+-|++++-..   .+. ..+.|.++.|...++.+..|+.+|.|...|++....-.......    .-|.+
T Consensus       228 fs~G~sqqv~L~nvetg~~q---sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r----lyh~S  299 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ---SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR----LYHDS  299 (425)
T ss_pred             ecccccceeEEEEeeccccc---ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE----EEcCc
Confidence            55566778888899887654   333 56789999999999999999999999999998753211111111    13556


Q ss_pred             CeEEEeeCC-CCCeEEEeeCCCeEEEEEccCccc---ceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988          119 KISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       119 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                      .|+++.... ++.+|++.+.+|.|.+||++.-++   +..+.+|.+.....-+-..+....+++++.|...+||.++.+.
T Consensus       300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            888888776 788999999999999999997776   8889998887666666777888889999999999999997654

>KOG4649|consensus

Probab=99.02  E-value=3.6e-06  Score=64.40  Aligned_cols=139  Identities=13%  Similarity=0.073  Sum_probs=90.4

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      ...+++.|+..+.+.--|..+|+..-...+.   ..+.+-+.- -|++++.|+..|.+++.+..++.....+......+ 
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk-   96 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK-   96 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc-
Confidence            4567888999999999999998865322222   223322222 47789999999999999999997766554333111 


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEE
Q psy988          114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  186 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  186 (408)
                             ......+++..+..++.|+..+..|.++..++...+.....  ..+-+..|-...|+.+...|.+.
T Consensus        97 -------~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   97 -------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             -------cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence                   11234567899999999999999999998877765543221  12234455233344444445443

>KOG1832|consensus

Probab=99.02  E-value=3.6e-10  Score=99.76  Aligned_cols=220  Identities=14%  Similarity=0.190  Sum_probs=150.2

Q ss_pred             eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC--EEEE
Q psy988           17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG--RCIF   93 (408)
Q Consensus        17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i   93 (408)
                      +.+. |....+|++|+- +.+.|+.|+..|.|+++++.+|...  .....|..+|+.+.-+.+|..+++.+.-.  -..+
T Consensus      1095 ~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccc--ccccccccccccccccCCcceeeeeccccCchHHH
Confidence            3444 888999999999 8999999999999999999999877  68899999999999999998877665433  4678


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc-ccc-ccceEEEEec
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNV-SSQIKASFSH  171 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~-~~~~~~~~~~  171 (408)
                      |++...-..           .+.-..-.++.|+.....-+.|+......+||++++..+.++-.. ... ..-....|+|
T Consensus      1172 W~~~s~~~~-----------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1172 WDASSTGGP-----------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             hccccccCc-----------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence            987642110           011124567888876555566666678999999999887774221 111 1123567999


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      +.+.++   .||  .+||.+...            .++.+...... ..                               
T Consensus      1241 ~D~LIl---ndG--vLWDvR~~~------------aIh~FD~ft~~-~~------------------------------- 1271 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPE------------AIHRFDQFTDY-GG------------------------------- 1271 (1516)
T ss_pred             CcceEe---eCc--eeeeeccHH------------HHhhhhhheec-cc-------------------------------
Confidence            887665   345  579987531            11222211100 01                               


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                          =.|+|.|..++..++     |||+++.+++...+.-..    ..+.|+..|..++..
T Consensus      1272 ----G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1272 ----GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             ----ccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence                135666666666554     999999998877765432    467898888877653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.00  E-value=1.1e-09  Score=59.68  Aligned_cols=38  Identities=24%  Similarity=0.468  Sum_probs=35.5

Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      +++..+.+|.+.|++++|+|                ++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~----------------~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSP----------------DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEET----------------TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEec----------------ccccceeeCCCCEEEEEC
Confidence            46778999999999999999                899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.00  E-value=9.3e-07  Score=76.82  Aligned_cols=281  Identities=12%  Similarity=0.077  Sum_probs=157.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE-----EEEE--ecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT-----AANF--CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~-----~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  107 (408)
                      +..+++++.+|.+.-+|.++++..-...+........     .+.-  .-.+..++.++.+|.+..+|.++++.......
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            4467777788999999999888653223322110000     0000  11355677888899999999999887665443


Q ss_pred             eeccccccCCCCeEE-EeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc---ceEEEEecCCCEEEEeecCc
Q psy988          108 RSTRGKNATGRKISG-IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS---QIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       108 ~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg  183 (408)
                      ..         .+.+ ...  .+..+++++.++.+.-+|.++++.+..+........   ..+-..  .+..++.+..+|
T Consensus       149 ~~---------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g  215 (394)
T PRK11138        149 AG---------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNG  215 (394)
T ss_pred             CC---------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCC
Confidence            21         1111 111  245777788889999999999998776654211100   000111  233567777888


Q ss_pred             eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC--C
Q psy988          184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP--G  261 (408)
Q Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~  261 (408)
                      .+..+|..++..........                     |.+..-           .        .....+..+|  .
T Consensus       216 ~v~a~d~~~G~~~W~~~~~~---------------------~~~~~~-----------~--------~~~~~~~~sP~v~  255 (394)
T PRK11138        216 RVSAVLMEQGQLIWQQRISQ---------------------PTGATE-----------I--------DRLVDVDTTPVVV  255 (394)
T ss_pred             EEEEEEccCChhhheecccc---------------------CCCccc-----------h--------hcccccCCCcEEE
Confidence            89888887664332210000                     000000           0        0000000111  2


Q ss_pred             CCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccc
Q psy988          262 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW  341 (408)
Q Consensus       262 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  341 (408)
                      +..+++++.+|.+..+|..+|+.+-......    ...+.  .++..|+.++.+|.+..+|..++.......        
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~--------  321 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQS--------  321 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccc--------
Confidence            4456667788999999999998765443211    11112  246678888889999999998874322100        


Q ss_pred             eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                       .+ .+ ....+...                  .+..|+.++.||.|.+.|..+++......
T Consensus       322 -~~-~~-~~~~sp~v------------------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        322 -DL-LH-RLLTAPVL------------------YNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             -cc-CC-CcccCCEE------------------ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence             00 00 11112222                  23466777889999999998887655443

>KOG1645|consensus

Probab=99.00  E-value=3.9e-08  Score=79.25  Aligned_cols=94  Identities=14%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             EEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC-CCEE
Q psy988            5 VRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-GKFA   82 (408)
Q Consensus         5 i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l   82 (408)
                      |+..+..+-+....+. |...|..++|||.+..++..++.+..|+|.|+++..+.  .....+ ..+.+++|.-| .+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--eheecc-CCceeeeeccCCccee
Confidence            3444444444444333 88899999999955558899999999999999998776  455555 78999999876 4678


Q ss_pred             EEEecCCEEEEEeccCCee
Q psy988           83 VVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~  101 (408)
                      +.|-..|.|.+||++..+.
T Consensus       252 YaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             EEeccCceEEEEEccCCCc
Confidence            8888999999999987653

>KOG4714|consensus

Probab=98.98  E-value=2e-08  Score=76.05  Aligned_cols=148  Identities=14%  Similarity=0.267  Sum_probs=90.6

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-----cCCEEEEEeccCCeeeEEEEEe
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-----YDGRCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~  108 (408)
                      .+..++++..||.+.+.+.+.-.... .....-...-.+.+....++++.++.     .-+..+.|+++..+.....   
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~-~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~---  175 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALM-SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS---  175 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhh-hhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc---
Confidence            45669999999999999987622111 11111111122233334455554432     1234455555543221111   


Q ss_pred             eccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCccccee-ecCccccccceEEEEec-CCCEEEEeecCceE
Q psy988          109 STRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSH-DGKYIVSGSENQCI  185 (408)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i  185 (408)
                           ......|.+++-+|..+ .+++|+.||.+.+||.+....... ++.|..  .+..+-|+| ++..|+++++||.+
T Consensus       176 -----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~--~i~eV~FHpk~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  176 -----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA--EIWEVHFHPKNPEHLFTCSEDGSL  248 (319)
T ss_pred             -----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh--hhhheeccCCCchheeEecCCCcE
Confidence                 11123488899998655 556678899999999998754433 444443  366788998 66889999999999


Q ss_pred             EEeeecc
Q psy988          186 YIWKTHH  192 (408)
Q Consensus       186 ~i~d~~~  192 (408)
                      .-||..+
T Consensus       249 w~wdas~  255 (319)
T KOG4714|consen  249 WHWDAST  255 (319)
T ss_pred             EEEcCCC
Confidence            9999754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.98  E-value=5.7e-06  Score=67.14  Aligned_cols=279  Identities=9%  Similarity=0.054  Sum_probs=157.3

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEEEEeccCCeeeEEEEEeeccccc
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCIFYTTDQLKYHTQIHVRSTRGKN  114 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~  114 (408)
                      +.+.++|.++++.+-  .+.  .+-.-.+..+|+++.+++++          ..-.|.+||..+......+.++......
T Consensus        17 ~rv~viD~d~~k~lG--mi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLG--MID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEE--EEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcEEE--Eee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            478999988877552  222  22233456789999988754          2347999999999887777665431111


Q ss_pred             cCCCCeEEEeeCCCCCeEEEe--eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          115 ATGRKISGIEPMPGEDKILVT--SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                       .......+.++.+++++++.  +-..+|.+.|+..++.+..+....    +. ..+-...+.|.+-+.||.+....+..
T Consensus        93 -~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~-~iyP~~~~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   93 -VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CW-LIYPSGNRGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EE-EEEEEETTEEEEEETTSCEEEEEETS
T ss_pred             -ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EE-EEEecCCCceEEEecCCceEEEEECC
Confidence             11234456788899988886  445689999999888776654322    11 22222234588888999999888864


Q ss_pred             ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS  272 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  272 (408)
                      ......                   ...-.|.++...++                      ..-++...+..++..+.+|
T Consensus       167 ~Gk~~~-------------------~~t~~F~~~~dp~f----------------------~~~~~~~~~~~~~F~Sy~G  205 (342)
T PF06433_consen  167 DGKEAQ-------------------KSTKVFDPDDDPLF----------------------EHPAYSRDGGRLYFVSYEG  205 (342)
T ss_dssp             TSSEEE-------------------EEEEESSTTTS-B-----------------------S--EEETTTTEEEEEBTTS
T ss_pred             CCCEeE-------------------eeccccCCCCcccc----------------------cccceECCCCeEEEEecCC
Confidence            321110                   01113444333221                      1112223344455567888


Q ss_pred             eEEEEEcCCCeeee--EEeec--------cceeceeEEEEcCCCCEEEEec--------CCc--eEEEeeccccCccccc
Q psy988          273 RIRLYDLRDLNLSC--KYKGY--------VNVSSQIKASFSHDGKYIVSGS--------ENQ--CIYIWKTHHDYAKFSS  332 (408)
Q Consensus       273 ~i~i~d~~~~~~~~--~~~~~--------~~~~~v~~~~~s~~~~~l~~~~--------~dg--~i~iw~~~~~~~~~~~  332 (408)
                      .|+-.|+.......  .+...        -.++.-.-+++++..+.|.+--        .|+  .|.++|+.+.      
T Consensus       206 ~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~------  279 (342)
T PF06433_consen  206 NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH------  279 (342)
T ss_dssp             EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT------
T ss_pred             EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC------
Confidence            88888877554221  11110        0111223467777665555421        222  3556666655      


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE-EecCCeEEEEeCCCCCCcccc
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS-ADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~  402 (408)
                            +.+.++.. ..++.+++.+.+               +.-+|.+ ...++.+.+||..+++....+
T Consensus       280 ------krv~Ri~l-~~~~~Si~Vsqd---------------~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  280 ------KRVARIPL-EHPIDSIAVSQD---------------DKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             ------EEEEEEEE-EEEESEEEEESS---------------SS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             ------eEEEEEeC-CCccceEEEccC---------------CCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence                  45555552 345789999984               3335544 456899999999999876654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=2.5e-09  Score=58.26  Aligned_cols=38  Identities=34%  Similarity=0.862  Sum_probs=34.9

Q ss_pred             CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy988           13 KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN   51 (408)
Q Consensus        13 ~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~   51 (408)
                      ++++..+. |.+.|++|+|+| ++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            36777777 999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066|consensus

Probab=98.97  E-value=4.5e-08  Score=85.93  Aligned_cols=150  Identities=15%  Similarity=0.157  Sum_probs=110.1

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ..+.+.|++++   ++.|+-|+.+|.|++.+.+... .   ....|...      ..+|.++++|+.||++.|-.+-+.+
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~---~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-K---TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-c---cccccccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence            44667788885   5689999999999999986553 1   22334332      5689999999999999999998887


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCC-----CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPG-----EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      ........         .++.+++++|+     .+.+++|+..| +.++.-+=.........+...+.+.++.|  .|++
T Consensus       105 ~~~~~df~---------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~l  172 (846)
T KOG2066|consen  105 EITQYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNL  172 (846)
T ss_pred             cceeEecC---------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcE
Confidence            76655543         38999999997     57899999888 77775432222223344555666888888  4778


Q ss_pred             EEEeecCceEEEeeeccceee
Q psy988          176 IVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~  196 (408)
                      +|-++.+| |++||+.+....
T Consensus       173 IAWand~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRL  192 (846)
T ss_pred             EEEecCCC-cEEEecccccee
Confidence            88887777 999999765443

>KOG3617|consensus

Probab=98.95  E-value=1.4e-07  Score=83.58  Aligned_cols=109  Identities=15%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCCEEEEEeC----CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           26 TAICFHPRDDRYFLSGSL----DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      +-..|+| ...++|.++.    .|.|.||- ++|+...-...+.|   +++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus        19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            4457999 8888988864    48888885 45554322233333   67799999988899999999999999887654


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      ....        ..|..+|..+.|+++|..++++..-|.+.+|...
T Consensus        94 htv~--------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVV--------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeec--------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3322        2456799999999999999999999999999765

>KOG0309|consensus

Probab=98.95  E-value=5.3e-09  Score=90.71  Aligned_cols=240  Identities=13%  Similarity=0.145  Sum_probs=146.4

Q ss_pred             EEEeccCC--eeEe--EEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            6 RLWHISRK--ECLC--CFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         6 ~vwd~~~~--~~~~--~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      .+|++...  +.+.  ..+|...|+.+-|+|+....+++++.|-.+..||+.+..... .....-......++|+-....
T Consensus        94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~-ys~~~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen   94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF-YSTSSWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce-eeeecccccCceeeecccCcc
Confidence            46776422  2222  234999999999999999999999999999999998866543 333334455678899876555


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      +++.+..+.|.+||.+.+......    .   ..|...+..++|.. ....+++++.||+|+.||...............
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s----~---K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~  245 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCS----L---KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN  245 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEE----e---cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc
Confidence            666677889999999876533221    1   12445777788764 234678889999999999875432222111111


Q ss_pred             cccceEEEEecCCC--EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          161 VSSQIKASFSHDGK--YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       161 ~~~~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                       ..+..-.+.|-|+  ++.-.-.+..+.+++.++....  ........++..+.+|...|....|...++...       
T Consensus       246 -~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e--~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~-------  315 (1081)
T KOG0309|consen  246 -FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE--WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG-------  315 (1081)
T ss_pred             -CcceeccccccCceeEeccccCCeeeeeccccchhhh--hccccCCcceeeecCcchHHHHHhhhhcccccC-------
Confidence             2233445556433  2221111224445544432211  111234566777888887777666654433210       


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  281 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  281 (408)
                                        .+....-.|++=+.|..+++|-+.+
T Consensus       316 ------------------d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  316 ------------------DYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ------------------CCCccceeEEEeecCCceEeeeccH
Confidence                              0111123577889999999998764

>KOG1920|consensus

Probab=98.93  E-value=4.4e-07  Score=83.67  Aligned_cols=238  Identities=13%  Similarity=0.118  Sum_probs=139.4

Q ss_pred             CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeee
Q psy988          118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  197 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  197 (408)
                      ..|.++.|..+...++.+...|.|.+-|.++.....  .+.. ...|.+++|+||++.++..+..+++.+-+-.-.... 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~v-d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~-  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNV-DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA-  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee--eeec-cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh-
Confidence            589999999999999999999999999888765432  2221 234778999999999999888888777543110000 


Q ss_pred             eecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec-------CCCceeeeeccCCCCCeEEEe--
Q psy988          198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN-------ATGRKISGIEPMPGEDKILVT--  268 (408)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~--  268 (408)
                             .+.+..-....+....+-|......+-..  ..+.........       .-...-+++.|--||+++++.  
T Consensus       145 -------E~~L~~d~~~~sk~v~VGwGrkeTqfrgs--~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~  215 (1265)
T KOG1920|consen  145 -------EKPLDADDERKSKFVNVGWGRKETQFRGS--EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV  215 (1265)
T ss_pred             -------ccccccccccccccceecccccceeeecc--hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence                   00000000011111222222211111000  000000000000       122334568899999999983  


Q ss_pred             ---cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe---cCCceEEEeeccccCccccccccCccccce
Q psy988          269 ---SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG---SENQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       269 ---~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                         .....|++||.+ |.+-..-....+  .-.+++|-|.|..+|+-   ..|+.|.+|.-+.-...         ....
T Consensus       216 ~~~~~~RkirV~drE-g~Lns~se~~~~--l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg---------~f~l  283 (1265)
T KOG1920|consen  216 ESETGTRKIRVYDRE-GALNSTSEPVEG--LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG---------EFVL  283 (1265)
T ss_pred             eccCCceeEEEeccc-chhhcccCcccc--cccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc---------cccc
Confidence               333789999977 544333222222  23478999999999974   34668999987753211         1222


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE---EecCCeEEEEeCCCC
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS---ADFNGVIRVFLNKTK  396 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s---~~~dg~v~iw~~~~~  396 (408)
                      .+......|..++|+.                ++..||.   ......|++|-+.+-
T Consensus       284 ~~p~de~~ve~L~Wns----------------~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  284 PFPLDEKEVEELAWNS----------------NSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCcccccchheeeecC----------------CCCceeeeecccccceEEEEEecCe
Confidence            2333344589999999                7888887   555556999987753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.92  E-value=8.3e-08  Score=74.82  Aligned_cols=252  Identities=14%  Similarity=0.128  Sum_probs=142.1

Q ss_pred             CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-----cceeecCccc----------cccceEEEEecCC--CEEEEee
Q psy988          118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-----LSCKYKGYVN----------VSSQIKASFSHDG--KYIVSGS  180 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~----------~~~~~~~~~~~~~--~~l~~~~  180 (408)
                      ..|+++.|...|.++++|...|.|.+|.-+...     ....++.|..          ...+..+.|..++  ..++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            478999999999999999999999999765432     1122333321          1224456665544  3477777


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccc-cccceEEE------EEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTC------AVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      .|.+|++|.+.....+......    ....+. ...+++++      -..+....++++       .......+.|...|
T Consensus       107 NdktiKlWKiyeknlk~va~nn----ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-------~p~rvyaNaH~yhi  175 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENN----LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-------KPCRVYANAHPYHI  175 (460)
T ss_pred             CCceeeeeeeecccchhhhccc----cccccccccCCCcCCHHHhhcccccccceEEEe-------ccceeccccceeEe
Confidence            8999999998654322110000    000000 00000000      001111111111       11112235778889


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE---Eeecc---ceeceeEEEEcCC-CCEEEEecCCceEEEeecccc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK---YKGYV---NVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~---~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .++.+..|...+++ ..|-+|.+|++.-......   ++.+.   -..-|++..|+|. ...+.-.+..|.|++-|++..
T Consensus       176 NSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         176 NSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            99999999888886 5577899999864322111   11211   1124667889994 455666777899999999843


Q ss_pred             Ccccccc--cc--CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          327 YAKFSSV--RR--DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       327 ~~~~~~~--~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      ..-....  -.  ..+.-..-+.+-...|..+.|++                +|+++++-+. -+|+|||++..+.
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~----------------ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD----------------NGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcC----------------CCcEEEEecc-ceEEEEecccccC
Confidence            1100000  00  00001111223346788899999                8999988764 5899999987653

>KOG0882|consensus

Probab=98.90  E-value=2.7e-08  Score=81.35  Aligned_cols=294  Identities=11%  Similarity=0.048  Sum_probs=177.7

Q ss_pred             CCceEEEEeccCCe---eEeEEE-eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEE
Q psy988            1 MDKTVRLWHISRKE---CLCCFQ-HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~---~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~   75 (408)
                      +||.++.|--..-.   .+..+. |-..|.+++.+- ++.++.|.+. |..++++|+++-.......+..-++.+..+. 
T Consensus        28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-  105 (558)
T KOG0882|consen   28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-  105 (558)
T ss_pred             cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEec-
Confidence            58888899754322   222233 888899999998 9999999777 9999999998866543334443343333221 


Q ss_pred             ecCC---CEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---
Q psy988           76 CENG---KFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---  148 (408)
Q Consensus        76 ~~~~---~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---  148 (408)
                       ..|   ..++ +.-.+|.+.++|-.........      ...-|..+|.++.+.+-+..+++....|.|.-|..+.   
T Consensus       106 -skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q  178 (558)
T KOG0882|consen  106 -SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ  178 (558)
T ss_pred             -CCCCeeeeEEeecccCCCcEEECCcCCcCccce------ecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence             222   1233 3345688999987654322111      1234567999999999999999999999999998873   


Q ss_pred             ---cccceeec-------CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988          149 ---LNLSCKYK-------GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  218 (408)
Q Consensus       149 ---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (408)
                         .+....++       .........++.|+|++..+.+-..|..|++++..++......-....  ..+........+
T Consensus       179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t--~~~~q~ks~y~l  256 (558)
T KOG0882|consen  179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT--DAQYQPKSPYGL  256 (558)
T ss_pred             CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch--hhhhcccccccc
Confidence               11111111       112234466799999999999999999999999987643321100000  000001111222


Q ss_pred             EEEEEeCCcceeeeecCCCCCCCceeeecCCC-ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc----
Q psy988          219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATG-RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN----  293 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----  293 (408)
                      ..+.|.   +.++          ...-+..++ ..-+.+.|...+++|+-++-=| |++.++.++++.+.+-....    
T Consensus       257 ~~Velg---RRma----------verelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~  322 (558)
T KOG0882|consen  257 MHVELG---RRMA----------VERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFT  322 (558)
T ss_pred             ceeehh---hhhh----------HHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhh
Confidence            222221   1111          011111122 2345677888899999887766 89999998877766532110    


Q ss_pred             ---------------------eeceeEEEEcCCCCEEEEecCCceEEEe
Q psy988          294 ---------------------VSSQIKASFSHDGKYIVSGSENQCIYIW  321 (408)
Q Consensus       294 ---------------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw  321 (408)
                                           ..+  .+.+.+|-..++++-....++++
T Consensus       323 ~~sl~q~~~k~~~~~~~~~a~~np--~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  323 RLSLYQGAQKSNLAALEVAASNNP--LLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             hHHHHhhhhhccchhhhhhhccCc--ccccCCCCeEEEeeeecceEEEE
Confidence                                 011  12356676777777778888888

>KOG2114|consensus

Probab=98.87  E-value=1.4e-06  Score=77.46  Aligned_cols=159  Identities=11%  Similarity=0.110  Sum_probs=101.3

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee-eEEEEEecCCCEEEEEecCC-----EEEEEeccCCeee
Q psy988           29 CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL-ITAANFCENGKFAVVGSYDG-----RCIFYTTDQLKYH  102 (408)
Q Consensus        29 ~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~  102 (408)
                      +|++ ++..+|.|+.+|.|.+.+-.   ......++.+... |..+....+..+|++.+.|+     .++||+++..+..
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            4566 77789999999999888732   2222456666666 44444333446788877764     5899999865322


Q ss_pred             E-EEEE---eeccccc-cCCCCeEEEeeCCCCCeEEEeeCCCeEEEEE--ccCcccceeecCccccccceEEEEecCCCE
Q psy988          103 T-QIHV---RSTRGKN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYD--LRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus       103 ~-~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      . ....   +...... ....++.+++.+.+-+.+++|-.+|.|..+.  +...+-.+.--.+....+++.+.+..+++.
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence            2 1111   1111111 2346889999999989999999999999884  222222233334555667889999988877


Q ss_pred             EEEeecCceEEEeeec
Q psy988          176 IVSGSENQCIYIWKTH  191 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~  191 (408)
                      ++.......|.+|.+.
T Consensus       186 ~lFv~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  186 VLFVATTEQVMLYSLS  201 (933)
T ss_pred             eEEEEecceeEEEEec
Confidence            3333334578888886

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.81  E-value=1.1e-05  Score=70.96  Aligned_cols=278  Identities=10%  Similarity=0.012  Sum_probs=152.3

Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccC-----CCCe---------------E--EEee---CCCCCeEEEee
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT-----GRKI---------------S--GIEP---MPGEDKILVTS  136 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~v---------------~--~~~~---~~~~~~l~~~~  136 (408)
                      |.+|+..|.++|+-+.+++....+.........+-     ...|               .  .+.+   ..||++|+.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            67888899999999988887776665443221100     0000               0  1111   12567777765


Q ss_pred             C-CCeEEEEEccCcccceeecCccccccceEEEEe--cCCCEEEEeec-------C-----------ceEEEeeecccee
Q psy988          137 N-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS--HDGKYIVSGSE-------N-----------QCIYIWKTHHDYA  195 (408)
Q Consensus       137 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-------d-----------g~i~i~d~~~~~~  195 (408)
                      . +..|...+++..++.+.+.... ...+..+.+.  |+..|++++++       |           +.+.+.|.++.. 
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme-  226 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME-  226 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce-
Confidence            3 4556666666554433322111 1111122222  33344444332       2           334444443321 


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC-ceeeee------ccCCCCCeEEEe
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG-RKISGI------EPMPGEDKILVT  268 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~------~~~~~~~~l~~~  268 (408)
                                 ...++.-. .....+.++|+++++.+...+.........+.... ..+..+      ++.++|++... 
T Consensus       227 -----------V~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-  293 (635)
T PRK02888        227 -----------VAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-  293 (635)
T ss_pred             -----------EEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE-
Confidence                       11111111 13356788999999987764443333333332222 122211      34567887776 


Q ss_pred             cCCCeEEEEEcCC-----CeeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccce
Q psy988          269 SNDSRIRLYDLRD-----LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       269 ~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                       .+++|.+.|..+     .+....+....   ....+.++|||+++++++ .+.+|.|.|+......+...-+.+.....
T Consensus       294 -~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva  369 (635)
T PRK02888        294 -GGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA  369 (635)
T ss_pred             -CCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence             367899999987     34555554322   345789999999988655 48899999998754322211111112222


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ...- ...-...+|.+                +|+...|---|..|..|++..
T Consensus       370 evev-GlGPLHTaFDg----------------~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        370 EPEL-GLGPLHTAFDG----------------RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eecc-CCCcceEEECC----------------CCCEEEeEeecceeEEEehHH
Confidence            2222 22234678888                888888888999999999886

>KOG1920|consensus

Probab=98.79  E-value=2e-05  Score=73.30  Aligned_cols=193  Identities=12%  Similarity=0.154  Sum_probs=123.7

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEc-
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL-  146 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-  146 (408)
                      ..|.++.|..++..++.+...|.|.+-|.++........         ....|.+++|+||+..++..+..+++.+.+- 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---------VDNGISAASWSPDEELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---------ccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence            579999999999999999999999999887765433222         2358999999999999999988887776532 


Q ss_pred             ---cC-------------------cccceeecCccc-------------------cccceEEEEecCCCEEEEee-----
Q psy988          147 ---RD-------------------LNLSCKYKGYVN-------------------VSSQIKASFSHDGKYIVSGS-----  180 (408)
Q Consensus       147 ---~~-------------------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~-----  180 (408)
                         -.                   |+....+.+..+                   ...-+++.|--||+++++..     
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence               11                   010111111110                   01123488999999998842     


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceee--------------e
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV--------------L  246 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~  246 (408)
                      ....|++||.+ +.....            -......-.+++|-|.|..+++........ .+..              +
T Consensus       220 ~~RkirV~drE-g~Lns~------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~-~IvffErNGL~hg~f~l~~  285 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNST------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDS-DIVFFERNGLRHGEFVLPF  285 (1265)
T ss_pred             CceeEEEeccc-chhhcc------------cCcccccccceeecCCCCeEeeeeecCCCC-cEEEEecCCccccccccCC
Confidence            23789999976 211111            111122335677888777766543332222 1111              2


Q ss_pred             cCCCceeeeeccCCCCCeEEE---ecCCCeEEEEEcCCCe
Q psy988          247 NATGRKISGIEPMPGEDKILV---TSNDSRIRLYDLRDLN  283 (408)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~---~~~d~~i~i~d~~~~~  283 (408)
                      ......+..++|+.++..|++   ......|++|-+.+..
T Consensus       286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            223344899999999999998   4555669999988754

>KOG1645|consensus

Probab=98.74  E-value=3.9e-06  Score=68.14  Aligned_cols=263  Identities=10%  Similarity=0.062  Sum_probs=145.1

Q ss_pred             eeecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCC
Q psy988           61 NEVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSND  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  138 (408)
                      ..+..|...|..++|+|..+ ++..++.+..|.|.|+++..........         ..+.+++|.-+.. +++.|..+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---------~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---------CCceeeeeccCCcceeEEeccC
Confidence            45677888999999999876 7888999999999999987765544422         4899999988765 55666779


Q ss_pred             CeEEEEEccCccc-ceeecCccccccceEEEE------ecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccc
Q psy988          139 SRIRLYDLRDLNL-SCKYKGYVNVSSQIKASF------SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  211 (408)
Q Consensus       139 g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (408)
                      |.|.+||++..+- ...+.......++..++.      .+.|..++....+  +..|++.......         +...-
T Consensus       258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~---------p~vle  326 (463)
T KOG1645|consen  258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL---------PCVLE  326 (463)
T ss_pred             ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC---------Ccccc
Confidence            9999999986542 233333222233333332      2234444444432  5666654321110         00011


Q ss_pred             ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC---CeeeeEE
Q psy988          212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---LNLSCKY  288 (408)
Q Consensus       212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~  288 (408)
                      .+..+.+.+++..+-.+.++.++..+.........-..                 .-..|| -.||..+.   |.....+
T Consensus       327 le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~-----------------~d~~dG-~pVc~~r~~~~Gs~~~kl  388 (463)
T KOG1645|consen  327 LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGR-----------------IDFRDG-FPVCGKRRTYFGSKQTKL  388 (463)
T ss_pred             cCCCcceeeeeecCccceEEEEecCCCCCccceeeeee-----------------eccccC-ceeeeecccccCCccccc
Confidence            22345566677777667777666554333222111100                 001111 11222111   0000000


Q ss_pred             eeccceeceeEEEEcCCCCEEE-EecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          289 KGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                        +..    ..+.-.++.++|+ .|...+.+.+||..+.            +.++++. -..+|.++....-.       
T Consensus       389 --~t~----~ai~~~~~nn~iv~~gd~tn~lil~D~~s~------------evvQ~l~-~~epv~Dicp~~~n-------  442 (463)
T KOG1645|consen  389 --STT----QAIRAVEDNNYIVVVGDSTNELILQDPHSF------------EVVQTLA-LSEPVLDICPNDTN-------  442 (463)
T ss_pred             --ccc----cceeccccccEEEEecCCcceeEEeccchh------------heeeecc-cCcceeecceeecC-------
Confidence              000    0112234556555 4556688999999886            4445444 34677777665420       


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                             .+.+|+.-. |..++|+..+.
T Consensus       443 -------~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  443 -------GSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             -------Ccchhhhee-cceEEEEecCC
Confidence                   244666655 66888887654

>KOG1275|consensus

Probab=98.74  E-value=2.6e-07  Score=82.46  Aligned_cols=170  Identities=15%  Similarity=0.192  Sum_probs=126.0

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      .+..+|+.+.+..+... ....|.-|+.   +++++.+|...|+|.+-|..+.+..  +.+..|.+.|..+.  -.|+.|
T Consensus       158 ~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~i--ht~~aHs~siSDfD--v~GNlL  230 (1118)
T KOG1275|consen  158 KLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETI--HTFDAHSGSISDFD--VQGNLL  230 (1118)
T ss_pred             heeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCcee--eeeeccccceeeee--ccCCeE
Confidence            35567777777777776 3445777776   6789999999999999999988877  79999999998755  478899


Q ss_pred             EEEec---------CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCc-cc
Q psy988           83 VVGSY---------DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDL-NL  151 (408)
Q Consensus        83 ~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~  151 (408)
                      ++++.         |.-|+|||++..+....+....         ...-+.|+|. ...+++++..|...+-|..+. ++
T Consensus       231 itCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  231 ITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             EEeecccccccccccchhhhhhhhhhhccCCccccc---------CchhhhhcccccceEEEEecccceeeccccccCCC
Confidence            99876         4567899998876654443322         2244567774 457788888899999994332 12


Q ss_pred             -ceeecCccccccceEEEEecCCCEEEEeecCceEEEee
Q psy988          152 -SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK  189 (408)
Q Consensus       152 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  189 (408)
                       ...+..+.....+..++++++++.++.|..+|.|.+|.
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             22233333444578899999999999999999999997

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.72  E-value=4.3e-05  Score=68.21  Aligned_cols=298  Identities=10%  Similarity=0.089  Sum_probs=153.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCC----ceeeE--EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEe
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ----TKLIT--AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  108 (408)
                      +..++.++.++.+.-.|..+++..-.......    ...+.  .+.. .++..++.++.+|.|.-+|.++++........
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            34566777789999999998876522222111    00110  0111 12267888889999999999999877665433


Q ss_pred             eccccccCCCCeE-EEeeCCCCCeEEEee---------CCCeEEEEEccCcccceeecCccccc----------------
Q psy988          109 STRGKNATGRKIS-GIEPMPGEDKILVTS---------NDSRIRLYDLRDLNLSCKYKGYVNVS----------------  162 (408)
Q Consensus       109 ~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~----------------  162 (408)
                      .....   ...+. ...+.  +..+++++         .+|.+..+|..+++.+-.+.......                
T Consensus       140 ~~~~~---~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         140 DQVPP---GYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             CCcCc---ceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            21000   00010 11111  24555553         36789999999998776654321100                


Q ss_pred             --cc-eEEEEecCCCEEEEeecCc------------------eEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          163 --SQ-IKASFSHDGKYIVSGSENQ------------------CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       163 --~~-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                        .+ ...++.+.+..++.++.++                  .+.-+|..+++...........  ...+.....+    
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~--~~~~~~~s~p----  288 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD--LWDYDGPNQP----  288 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC--CcccccCCCC----
Confidence              00 0234455566777776665                  4666666655444331100000  0000000000    


Q ss_pred             EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC---CeEEEecCCCeEEEEEcCCCeeeeEEeeccceecee
Q psy988          222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE---DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI  298 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  298 (408)
                                                    .+..+. .-++   ..+++++.+|.+..+|.++|+.+-.......     
T Consensus       289 ------------------------------~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-----  332 (488)
T cd00216         289 ------------------------------SLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-----  332 (488)
T ss_pred             ------------------------------eEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-----
Confidence                                          000000 0112   2567788999999999999998776543211     


Q ss_pred             EEEEcCCCCEEEEe------------------cCCceEEEeeccccCccccccccCccccceeeeeeccce--EEEEecC
Q psy988          299 KASFSHDGKYIVSG------------------SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV--TCAVFAP  358 (408)
Q Consensus       299 ~~~~s~~~~~l~~~------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~  358 (408)
                      .++.+|  ..+..+                  ..+|.+.-.|..+++...+.........   .. -..+.  ..+..  
T Consensus       333 ~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~---~~-~g~~~~~~~~~~--  404 (488)
T cd00216         333 PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDS---WN-IGFPHWGGSLAT--  404 (488)
T ss_pred             ccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccc---cc-cCCcccCcceEe--
Confidence            123344  223322                  2357787888777743332110000000   00 00001  11111  


Q ss_pred             CchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccccc
Q psy988          359 CPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       359 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                                      .+..|+.++.||.|+.+|..+++..-..++
T Consensus       405 ----------------~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         405 ----------------AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             ----------------cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence                            456888888999999999999987766554

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.72  E-value=8.4e-07  Score=75.87  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             EEEeccCCeeE----eEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            6 RLWHISRKECL----CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         6 ~vwd~~~~~~~----~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      .+|++...+..    ..+.....|.+++++| +.+.|+.|+.||+|.+||...+...    +....-.++.++|+|+|..
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~----~~ka~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL----LAKAEFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee----eeeecccceEEEEcCCCcE
Confidence            45666544432    2234889999999999 9999999999999999998776432    2233456889999999999


Q ss_pred             EEEEecCCEEEEEeccCCe
Q psy988           82 AVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~  100 (408)
                      +++|+..|.+.+||+.-..
T Consensus       314 ~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCceEEEEEeecCc
Confidence            9999999999999987443

>KOG1832|consensus

Probab=98.72  E-value=1.6e-08  Score=89.80  Aligned_cols=225  Identities=16%  Similarity=0.242  Sum_probs=145.3

Q ss_pred             eeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC
Q psy988           59 VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND  138 (408)
Q Consensus        59 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  138 (408)
                      .++.+..|....+|++|+.+.++|+.|+..|.|+++++.++.....        .+.|...|+.+.-+.+|..+++.+.-
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s--------~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES--------VNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc--------ccccccccccccccCCcceeeeeccc
Confidence            3456777889999999999999999999999999999998765333        24677899999999999988776442


Q ss_pred             -C-eEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccccc
Q psy988          139 -S-RIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  215 (408)
Q Consensus       139 -g-~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                       . ...+|++.. +.+...+..      ..++.|+.....-+.|.......+||+++.....+.        +....+.+
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf~e------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty--------lt~~~~~~ 1230 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDE------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY--------LTDTVTSS 1230 (1516)
T ss_pred             cCchHHHhccccccCccccccc------cceeehhhhHHHHHhcccccceEEEecccCcHHHHh--------cCcchhhh
Confidence             2 467899864 334444433      335677776555556666567899999875332110        00011111


Q ss_pred             ceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecccee
Q psy988          216 AVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS  295 (408)
Q Consensus       216 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  295 (408)
                      ..-++..                                   |+|+..+++   .||  .+||.+..+.+..|.....  
T Consensus      1231 y~~n~a~-----------------------------------FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-- 1268 (1516)
T KOG1832|consen 1231 YSNNLAH-----------------------------------FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-- 1268 (1516)
T ss_pred             hhccccc-----------------------------------cCCCcceEe---eCc--eeeeeccHHHHhhhhhhee--
Confidence            1113344                                   444444443   455  3899998877777664432  


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      . ..-.|+|+|.-++.-+     .|||+++-            +++.....-.  -..+.|+..|..|.+..
T Consensus      1269 ~-~~G~FHP~g~eVIINS-----EIwD~RTF------------~lLh~VP~Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1269 Y-GGGGFHPSGNEVIINS-----EIWDMRTF------------KLLHSVPSLD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             c-ccccccCCCceEEeec-----hhhhhHHH------------HHHhcCcccc--ceEEEeccCccchhhhh
Confidence            1 1337999999988755     58999875            3433332222  24577877666655544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.69  E-value=0.00015  Score=62.59  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             EEEEEcCCCeeeeE-EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE
Q psy988          274 IRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  352 (408)
Q Consensus       274 i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  352 (408)
                      -.+|+....++.+. +....-...+.+++++|+...++.|+.||+|.+||...+              +.....+.-..+
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------------~t~~~ka~~~P~  303 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--------------VTLLAKAEFIPT  303 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--------------eeeeeeecccce
Confidence            35666654443222 122233457889999999999999999999999998764              222333445578


Q ss_pred             EEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          353 CAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      .++|+|                +|.++++|+.-|.+.+||+.-..
T Consensus       304 ~iaWHp----------------~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  304 LIAWHP----------------DGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcC----------------CCcEEEEEcCCceEEEEEeecCc
Confidence            999999                99999999999999999986543

>KOG2066|consensus

Probab=98.68  E-value=1.5e-06  Score=76.76  Aligned_cols=143  Identities=15%  Similarity=0.153  Sum_probs=99.1

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC-----CCEEEEEecCCEEEEEeccCCeeeEEEEEe
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-----GKFAVVGSYDGRCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  108 (408)
                      +|.+++||+.||+|.|-.+.+.+...  .. ....++.+++++|+     .+.+++|+..| +.++.-.=........  
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~--~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~--  155 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEIT--QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV--  155 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccce--eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee--
Confidence            69999999999999999998877652  22 23567999999998     56799999888 7776533222111111  


Q ss_pred             eccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc----ccceEEEEecCCCEEEEeecCce
Q psy988          109 STRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV----SSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                          .....++|.++.|.  |++++-+..+| |++||..+.+.+..++.....    .....+.|.++. .|+.|-.| +
T Consensus       156 ----l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~  226 (846)
T KOG2066|consen  156 ----LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-S  226 (846)
T ss_pred             ----eecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-e
Confidence                12234699999996  77888887766 999999988776665443321    123356777655 46666544 6


Q ss_pred             EEEeeec
Q psy988          185 IYIWKTH  191 (408)
Q Consensus       185 i~i~d~~  191 (408)
                      |++..++
T Consensus       227 v~i~~I~  233 (846)
T KOG2066|consen  227 VKICSIK  233 (846)
T ss_pred             EEEEEEe
Confidence            8888886

>KOG3617|consensus

Probab=98.67  E-value=8.2e-07  Score=78.94  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      |+|.||- ++|++.+-..-.-.+++++|+| ..-.|+.|-.-|.+.+|...+.+..  .....|+.+|..+.||++|..+
T Consensus        41 GSVtIfa-dtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~h--tv~~th~a~i~~l~wS~~G~~l  116 (1416)
T KOG3617|consen   41 GSVTIFA-DTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETH--TVVETHPAPIQGLDWSHDGTVL  116 (1416)
T ss_pred             ceEEEEe-cCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceee--eeccCCCCCceeEEecCCCCeE
Confidence            4455552 4555554444444567899999 8888899988999999998877655  5667899999999999999999


Q ss_pred             EEEecCCEEEEEeccC
Q psy988           83 VVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~   98 (408)
                      +++..-|.+.+|..+.
T Consensus       117 ~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEcCCCceeEEEEeee
Confidence            9999999999998874

>KOG3621|consensus

Probab=98.64  E-value=2e-05  Score=69.00  Aligned_cols=124  Identities=15%  Similarity=0.209  Sum_probs=96.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |...|.--+++. .+++++.|+.-|.+++|+-..++... ....+-.+.+..+..+++..++|.|+..|.|.++-+....
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            666676667777 88999999999999999988777653 3333455667778889999999999999999999888744


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      ........  .....|...|++++|++++..+++|...|.|..-.+..
T Consensus       110 p~~~~~~t--~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVT--PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcceeec--cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            33332222  22334778999999999999999999999998877765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.63  E-value=2.4e-05  Score=66.80  Aligned_cols=266  Identities=15%  Similarity=0.114  Sum_probs=120.4

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC---Ce
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ---LK  100 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~  100 (408)
                      .|+.+.|.+ +..-|+.|...|.|.||.....+...    ......-....+.+-      ...++.-.+-|+..   ..
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~----~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYG----NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE----------------------S--------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCC----ccCCCcccCcccccc------cccCCCcceEEehhhCCcc
Confidence            588999999 66679999999999999986643321    000001111111110      00111122223222   11


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC------ccccccceEEEEec---
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG------YVNVSSQIKASFSH---  171 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~---  171 (408)
                      ....+....  -.....++|++++.+ |=.++++|.++|.+.|.|+|....+..-..      ......+.++.|..   
T Consensus        72 ~~~gf~P~~--l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~  148 (395)
T PF08596_consen   72 LKEGFLPLT--LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL  148 (395)
T ss_dssp             -SEEEEEEE--EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred             cccccCchh--heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence            111111111  111224689999987 566999999999999999987766554211      12233455666652   


Q ss_pred             --CC---CEEEEeecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEE-EeCCcceeeeecCCCCCCCcee
Q psy988          172 --DG---KYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAV-FAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       172 --~~---~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                        |+   -.+++|...|.+.+|.+.. ....+..      ........+..++..+. ++.+...-+.            
T Consensus       149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v------~~~~~~~~~~~~i~~I~~i~~~~G~~a~------------  210 (395)
T PF08596_consen  149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSV------QFAGATTNHDSPILSIIPINADTGESAL------------  210 (395)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEE------EEEEEE--SS----EEEEEETTT--B-B------------
T ss_pred             CCCcccceEEEEEeCCCCEEEEEEecCCCCceEE------EEeeccccCCCceEEEEEEECCCCCccc------------
Confidence              33   4688999999999998742 1111110      00011112333333332 2111110000            


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE-----cCCCCEEEEecCCceEE
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF-----SHDGKYIVSGSENQCIY  319 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~  319 (408)
                         ........+.-...-..+++...+..++++...+.+...+...  ....+..+++     ...+..|++-..+|.|+
T Consensus       211 ---At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~  285 (395)
T PF08596_consen  211 ---ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIR  285 (395)
T ss_dssp             ----BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEE
T ss_pred             ---CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEE
Confidence               0000000111111112234445567799999988776655442  2122333444     23566788888999999


Q ss_pred             Eeecccc
Q psy988          320 IWKTHHD  326 (408)
Q Consensus       320 iw~~~~~  326 (408)
                      +|.+..-
T Consensus       286 i~SLP~L  292 (395)
T PF08596_consen  286 IYSLPSL  292 (395)
T ss_dssp             EEETTT-
T ss_pred             EEECCCc
Confidence            9999865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1275|consensus

Probab=98.62  E-value=1.7e-06  Score=77.46  Aligned_cols=195  Identities=10%  Similarity=0.130  Sum_probs=130.3

Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      +..++.|+....+..+|+.+.+.........        +.+.-+..  +++.+.+|...|+|.+-|.++.+.+.++..|
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--------~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--------SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccC--------CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc
Confidence            4456667677777778877766554443322        13444443  4678888888888888888888888888887


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      .+..    .+|+-.|+.|++++..+  +.+.+                                                
T Consensus       217 s~si----SDfDv~GNlLitCG~S~--R~~~l------------------------------------------------  242 (1118)
T KOG1275|consen  217 SGSI----SDFDVQGNLLITCGYSM--RRYNL------------------------------------------------  242 (1118)
T ss_pred             ccce----eeeeccCCeEEEeeccc--ccccc------------------------------------------------
Confidence            7642    35666788888877543  22211                                                


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC-CCEEEEecCCce
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-GKYIVSGSENQC  317 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~  317 (408)
                                                    ..|.-|+|||++..+.+.-+.-+..+.   -+.|.|. ...+++++..|.
T Consensus       243 ------------------------------~~D~FvkVYDLRmmral~PI~~~~~P~---flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  243 ------------------------------AMDPFVKVYDLRMMRALSPIQFPYGPQ---FLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             ------------------------------cccchhhhhhhhhhhccCCcccccCch---hhhhcccccceEEEEecccc
Confidence                                          346679999999888776665554432   3567774 346788888999


Q ss_pred             EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          318 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ..+-|..+-..+       . .-..........+..+.+++                +++.+|.|..+|.|.+|.-.
T Consensus       290 ~q~vd~~~lsNP-------~-~~~~~v~p~~s~i~~fDiSs----------------n~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  290 FQFVDTATLSNP-------P-AGVKMVNPNGSGISAFDISS----------------NGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             eeeccccccCCC-------c-cceeEEccCCCcceeEEecC----------------CCceEEEecccCcEeeecCC
Confidence            999884432111       0 11111222344589999999                99999999999999999843

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.62  E-value=0.00012  Score=65.51  Aligned_cols=193  Identities=17%  Similarity=0.167  Sum_probs=108.3

Q ss_pred             CceEEEEeccCCeeEeEEEeCCc-------eE--EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc---ee
Q psy988            2 DKTVRLWHISRKECLCCFQHIDF-------VT--AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT---KL   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~-------v~--~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~   69 (408)
                      |+.|.-.|..+++.+-.+.-...       +.  .+...  ++..++.++.+|.|.-+|.++++..-......+.   ..
T Consensus        70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~  147 (488)
T cd00216          70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYT  147 (488)
T ss_pred             CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceE
Confidence            56677778888877766542211       00  01111  2257888888999999999999876333332221   00


Q ss_pred             eE-EEEEecCCCEEEEEe---------cCCEEEEEeccCCeeeEEEEEeeccc--ccc---------CC-CCe-EEEeeC
Q psy988           70 IT-AANFCENGKFAVVGS---------YDGRCIFYTTDQLKYHTQIHVRSTRG--KNA---------TG-RKI-SGIEPM  126 (408)
Q Consensus        70 v~-~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~---------~~-~~v-~~~~~~  126 (408)
                      +. ...+.  +..++.++         .+|.+..+|..+++............  ...         .. ..+ ...++.
T Consensus       148 i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d  225 (488)
T cd00216         148 MTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD  225 (488)
T ss_pred             ecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe
Confidence            11 11111  24455553         36889999999998776655421100  000         00 011 123444


Q ss_pred             CCCCeEEEeeCCC------------------eEEEEEccCcccceeecCccccc----cceEEEEe----cCCC---EEE
Q psy988          127 PGEDKILVTSNDS------------------RIRLYDLRDLNLSCKYKGYVNVS----SQIKASFS----HDGK---YIV  177 (408)
Q Consensus       127 ~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~---~l~  177 (408)
                      +.+..+++++.++                  .|.-+|+++++..-.++......    ......+.    -++.   .++
T Consensus       226 ~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~  305 (488)
T cd00216         226 PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV  305 (488)
T ss_pred             CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence            5567788886554                  79999999999877664321110    00000111    1333   577


Q ss_pred             EeecCceEEEeeeccceeeee
Q psy988          178 SGSENQCIYIWKTHHDYAKFS  198 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~  198 (408)
                      +++.+|.++.+|.+++.....
T Consensus       306 ~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         306 HAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             EECCCceEEEEECCCCcEeeE
Confidence            888899999999988765543

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.61  E-value=0.00022  Score=60.96  Aligned_cols=170  Identities=13%  Similarity=0.070  Sum_probs=93.4

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC-------C--------
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-------Q--------   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-------~--------   66 (408)
                      .+.+.|||+++++..........+....||| +|+.+|... ++.|.+++..++....+. ..+       -        
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHH
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEec-cccceeEEcCccceecccc
Confidence            3578899999987776665678899999999 899888885 589999998776443221 111       0        


Q ss_pred             -ceeeEEEEEecCCCEEEEEecC-CEEEEEecc---CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeE
Q psy988           67 -TKLITAANFCENGKFAVVGSYD-GRCIFYTTD---QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRI  141 (408)
Q Consensus        67 -~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  141 (408)
                       -+.-..+-|||||++|+....| ..+..+.+.   ....              .--.+..+.+-.-|..-.    .-.+
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------------~yp~~~~~~YPk~G~~np----~v~l  160 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------------QYPEVESIRYPKAGDPNP----RVSL  160 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------------SS-EEEEEE--BTTS-------EEEE
T ss_pred             ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------------cCCcccccccCCCCCcCC----ceEE
Confidence             1123568899999999887654 233333221   1100              000222333221121110    1246


Q ss_pred             EEEEccCcccceeecC---ccccccceEEEEecCCCEEEEeecC-----ceEEEeeecc
Q psy988          142 RLYDLRDLNLSCKYKG---YVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHH  192 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  192 (408)
                      .++|+.+++....-..   ......+..+.|.++++.|+..-.+     ..+.+.|..+
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t  219 (353)
T PF00930_consen  161 FVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST  219 (353)
T ss_dssp             EEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred             EEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence            6788887765322111   1233446788999999855443322     2455556544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.55  E-value=0.00012  Score=57.21  Aligned_cols=160  Identities=14%  Similarity=0.095  Sum_probs=95.5

Q ss_pred             CCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCc-EEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC--
Q psy988           12 RKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGK-LRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD--   88 (408)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--   88 (408)
                      .|+++....-...-..|+|+|.-..-++.+-.-|+ ..++|..+.+............-.-.=.|||||.+|+..-.|  
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd  136 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD  136 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence            46666666666666778999966666777766665 578898877654322111111112223599999999876544  


Q ss_pred             ---CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------------------CCeEEEEEcc
Q psy988           89 ---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------------------DSRIRLYDLR  147 (408)
Q Consensus        89 ---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~  147 (408)
                         |.|-|||.+..-       ........|.-....+.+.+||+.++.+..                  .-++.+.|..
T Consensus       137 ~~rGViGvYd~r~~f-------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a  209 (366)
T COG3490         137 PNRGVIGVYDAREGF-------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA  209 (366)
T ss_pred             CCCceEEEEeccccc-------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence               789999987432       112222334445677889999999888642                  1134455555


Q ss_pred             CcccceeecCc--cccccceEEEEecCCCEEEE
Q psy988          148 DLNLSCKYKGY--VNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       148 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~  178 (408)
                      +++++.+....  ....++..++..+||...+.
T Consensus       210 tG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg  242 (366)
T COG3490         210 TGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG  242 (366)
T ss_pred             ccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence            66555443222  33344556666666654443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.53  E-value=0.00025  Score=56.21  Aligned_cols=125  Identities=17%  Similarity=0.289  Sum_probs=71.1

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      -.+.+..++|+|+++.++++....+.|...+.+ |+.+....+.+ .+..-.+++..++.++++--.++.+.++++....
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            334599999999445566666777888888864 56654444554 3457888888888877776668999999884432


Q ss_pred             ee---EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988          101 YH---TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus       101 ~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      ..   .................+-.++|.|.++.|+++-+.....+|.+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence            11   111111111112334567888888888887777665555555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114|consensus

Probab=98.52  E-value=1.4e-05  Score=71.52  Aligned_cols=211  Identities=9%  Similarity=0.107  Sum_probs=127.3

Q ss_pred             eeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccceeeee
Q psy988          124 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHDYAKFS  198 (408)
Q Consensus       124 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~  198 (408)
                      +|++.+..++.|+.+|.|.+.+-. .+.+..++.+... .+..+....+..+|++.+.|+     .+++|+++.-.... 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~-  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN-  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC-
Confidence            457788899999999999888743 3333555555443 233333333446777776654     58999986421000 


Q ss_pred             ecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEE
Q psy988          199 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  278 (408)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  278 (408)
                           ...+          +......|.                  .......++.+++.+.+-+.+++|-.+|.|..+.
T Consensus       107 -----sP~c----------~~~~ri~~~------------------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  107 -----SPQC----------LYEHRIFTI------------------KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             -----Ccce----------eeeeeeecc------------------CCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence                 0000          000011110                  0012345667777777888899999999999986


Q ss_pred             cCCC--eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEe
Q psy988          279 LRDL--NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  356 (408)
Q Consensus       279 ~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  356 (408)
                      -+-.  +-.+.--.+.+..+|+.+.+-.+++.++-......|.+|.+....           .....+..|...++|..+
T Consensus       154 GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----------p~~~~ld~~G~~lnCss~  222 (933)
T KOG2114|consen  154 GDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----------PSLKVLDNNGISLNCSSF  222 (933)
T ss_pred             CcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-----------cceeeeccCCccceeeec
Confidence            3211  111223345567799999999999874333445679999988531           234556778889999999


Q ss_pred             cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          357 APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      ++                ....++.|+ +..+.+|+......
T Consensus       223 ~~----------------~t~qfIca~-~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  223 SD----------------GTYQFICAG-SEFLYFYDSDGRGP  247 (933)
T ss_pred             CC----------------CCccEEEec-CceEEEEcCCCcce
Confidence            97                333344444 34577777765443

>KOG4649|consensus

Probab=98.51  E-value=0.00022  Score=54.96  Aligned_cols=103  Identities=11%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccc
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKN  114 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  114 (408)
                      |++++.|...|.+++.+.++|...  ..+.....--......+++..+..++.|++.+..|..+...+...+...     
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~--w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-----  135 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQI--WNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-----  135 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhhe--eeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-----
Confidence            567889999999999999998654  2222211111223456789999999999999999998877655432211     


Q ss_pred             cCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988          115 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                         +...+-+..|....|+++...|.+.--..+
T Consensus       136 ---~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  136 ---GTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             ---ceeccceecCCCceEEEEeccceEEEEccC
Confidence               122223344534455555555555444433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=6.4e-05  Score=66.43  Aligned_cols=170  Identities=11%  Similarity=0.112  Sum_probs=111.1

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCC----cEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDG----KLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .+.+.+.|.++.+....+.-.+....+.++| +++++++.+.+.    ++..-+..+....  ..+..  ..+  -++.+
T Consensus       214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~--vvfni--~~i--ea~vk  286 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWV--VVFNI--ARI--EEAVK  286 (635)
T ss_pred             eEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceE--EEEch--HHH--HHhhh
Confidence            3567788888888877777666778889999 888888876432    2333322221111  01100  000  13345


Q ss_pred             CCCEEEEEecCCEEEEEeccC-----CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCccc
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQ-----LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNL  151 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~  151 (408)
                      +|++...  .++.|.+.|..+     .+....+..         ......+.++|||+++++++. +.++.++|+++.+.
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV---------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV---------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC---------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence            7887766  367899999887     333333222         236778999999999988755 88999999987553


Q ss_pred             ------------ceeecCccccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          152 ------------SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       152 ------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                                  ......   .......+|.++|+...+-.-|..|..||+..
T Consensus       356 ~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                        111111   12345678999998777888899999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.49  E-value=6e-05  Score=65.35  Aligned_cols=162  Identities=15%  Similarity=0.149  Sum_probs=88.1

Q ss_pred             ceEEEEeccCC------ee----EeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE
Q psy988            3 KTVRLWHISRK------EC----LCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT   71 (408)
Q Consensus         3 g~i~vwd~~~~------~~----~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~   71 (408)
                      ..|+..|+++.      +.    .+.++ ..-....+.++| ++++++.+ .||...|+........       ..+.-.
T Consensus         2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~r~k-------~~G~g~   72 (443)
T PF04053_consen    2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAWRNK-------AFGSGL   72 (443)
T ss_dssp             TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-T-TSSEEEEE-ETTEEEEEETTTTEEE-------EEEE-S
T ss_pred             CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECC-CCCEEEEE-cCCEEEEEEccCCccc-------ccCcee
Confidence            45777777655      11    23333 556689999999 99988885 4688888883222211       124456


Q ss_pred             EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc
Q psy988           72 AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL  151 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  151 (408)
                      ...|.+.++ +|+-...++|.++.--+......+...         ..+..+-.   |..|+..+.+ .|.+||+.+++.
T Consensus        73 ~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~---------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~  138 (443)
T PF04053_consen   73 SFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP---------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL  138 (443)
T ss_dssp             EEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S---------S-EEEEE----SSSEEEEETT-EEEEE-TTT--E
T ss_pred             EEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC---------cccceEEc---CcEEEEECCC-CEEEEEhhHcce
Confidence            678888555 666666888999632221111111111         12333332   7777777654 899999999998


Q ss_pred             ceeecCccccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          152 SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      ++.+...    .+..+.|++++++++..+.+ .+++++...
T Consensus       139 i~~i~v~----~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  139 IRRIDVS----AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             EEEESS-----E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eeEEecC----CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            8887653    25679999999999988765 677877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008|consensus

Probab=98.49  E-value=1.4e-07  Score=80.83  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=105.8

Q ss_pred             CCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC-CCEEEEEe----cCCEEEEEe
Q psy988           22 IDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN-GKFAVVGS----YDGRCIFYT   95 (408)
Q Consensus        22 ~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~----~dg~i~iw~   95 (408)
                      ...+.|+++.-. +..+++.|..+|.|.+-.+....-.......++....++++|++- .+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            455777776652 235788899999999988765443333466788899999999984 45566653    246799999


Q ss_pred             ccCCee--eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceeecCccccccceEEEEec-
Q psy988           96 TDQLKY--HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSH-  171 (408)
Q Consensus        96 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-  171 (408)
                      +.+.-.  ........     +.......++|..+.+.+++|.....+.++|++.... ...+..    ..+..+...| 
T Consensus       136 i~s~ltvPke~~~fs~-----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSS-----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPF  206 (783)
T ss_pred             cccccCCCcccccccc-----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCC
Confidence            987622  11111111     1223456888888888899998888999999984321 111111    1234467778 


Q ss_pred             CCCEEEEeecCceEEEeee
Q psy988          172 DGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~  190 (408)
                      .++++++-. ||.|.+||.
T Consensus       207 ~~nY~cs~~-dg~iAiwD~  224 (783)
T KOG1008|consen  207 SPNYFCSNS-DGDIAIWDT  224 (783)
T ss_pred             CCCceeccc-cCceeeccc
Confidence            677777665 899999994

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.43  E-value=0.00058  Score=59.40  Aligned_cols=226  Identities=14%  Similarity=0.093  Sum_probs=108.3

Q ss_pred             eecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeE
Q psy988           62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRI  141 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  141 (408)
                      .+.........+.++|+|+++++ +.||...++..........             +.-...+|.+ .+.+++-...+.|
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-------------G~g~~~vw~~-~n~yAv~~~~~~I   91 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-------------GSGLSFVWSS-RNRYAVLESSSTI   91 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-------------EE-SEEEE-T-SSEEEEE-TTS-E
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-------------CceeEEEEec-CccEEEEECCCeE
Confidence            33344445789999999999888 5688888888554433221             2345678888 4557777668889


Q ss_pred             EEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                      .++.--+.+....+.....   +..+ |.  |..|...+.+ .|.+||.+++...            +.+..  .+|..+
T Consensus        92 ~I~kn~~~~~~k~i~~~~~---~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i------------~~i~v--~~vk~V  150 (443)
T PF04053_consen   92 KIYKNFKNEVVKSIKLPFS---VEKI-FG--GNLLGVKSSD-FICFYDWETGKLI------------RRIDV--SAVKYV  150 (443)
T ss_dssp             EEEETTEE-TT-----SS----EEEE-E---SSSEEEEETT-EEEEE-TTT--EE------------EEESS---E-EEE
T ss_pred             EEEEcCccccceEEcCCcc---cceE-Ec--CcEEEEECCC-CEEEEEhhHccee------------eEEec--CCCcEE
Confidence            9974333333233333221   2222 22  7777776554 8999999764322            22211  124555


Q ss_pred             EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---------e--eeeEEee
Q psy988          222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---------N--LSCKYKG  290 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~--~~~~~~~  290 (408)
                      .|+++                                   +.+++..+.+ .+.+++.+..         -  ....+..
T Consensus       151 ~Ws~~-----------------------------------g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E  194 (443)
T PF04053_consen  151 IWSDD-----------------------------------GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE  194 (443)
T ss_dssp             EE-TT-----------------------------------SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred             EEECC-----------------------------------CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE
Confidence            55554                                   5555665544 5777765432         0  1222211


Q ss_pred             ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988          291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                        -...|.+.+|..| -++.+ +.. .++-  +..+             ....+..-..++.=+...|            
T Consensus       195 --~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~G-------------e~~~i~~ld~~~yllgy~~------------  242 (443)
T PF04053_consen  195 --ISERIKSGCWVED-CFIYT-TSN-HLKY--LVNG-------------ETGIIAHLDKPLYLLGYLP------------  242 (443)
T ss_dssp             --E-S--SEEEEETT-EEEEE--TT-EEEE--EETT-------------EEEEEEE-SS--EEEEEET------------
T ss_pred             --ecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcC-------------CcceEEEcCCceEEEEEEc------------
Confidence              1235677888766 33333 333 5554  3222             1222333345667777777            


Q ss_pred             CCCCcccEEEEEecCCeEEEEeCCC
Q psy988          371 KSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       371 ~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                          ..+.+.....|+.|..+.+..
T Consensus       243 ----~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  243 ----KENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ----TTTEEEEE-TT--EEEEE--H
T ss_pred             ----cCCEEEEEECCCCEEEEEECH
Confidence                567888888898888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1897|consensus

Probab=98.37  E-value=0.002  Score=59.34  Aligned_cols=339  Identities=15%  Similarity=0.080  Sum_probs=165.3

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC------CEEEEEecCCEEE
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG------KFAVVGSYDGRCI   92 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~   92 (408)
                      +.-.+.++....+- +...++.++.++.+...++..+.... ..-......|.|+.++|-|      ++++.|..+..+.
T Consensus       484 W~~p~~~ti~~~~~-n~sqVvvA~~~~~l~y~~i~~~~l~e-~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~  561 (1096)
T KOG1897|consen  484 WRPPGKITIGVVSA-NASQVVVAGGGLALFYLEIEDGGLRE-VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM  561 (1096)
T ss_pred             ccCCCceEEEEEee-cceEEEEecCccEEEEEEeeccceee-eeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence            33344455544444 45556666666777777776655321 1222335679999998742      3788888877665


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEc--cCcccceeecCccccccceEEEEe
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL--RDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      +.-..........   ...........|.-..+-.+..+|+++..||.+.-|-+  .++.....-+.+.+..++.--.|+
T Consensus       562 ~l~~~pd~~~~~~---~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~  638 (1096)
T KOG1897|consen  562 ILTFLPDLILITH---EQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFS  638 (1096)
T ss_pred             EEEECCCcceeee---eccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEe
Confidence            5443322211111   10111112234555566666889999999999877654  444433222223332333333455


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      ..++.-+.+..|.-..+|.-+ ++..+..+..+.......+.... .--+++....+...+...++........  -.-.
T Consensus       639 sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a-~~d~l~~~~~~~l~i~tid~iqkl~irt--vpl~  714 (1096)
T KOG1897|consen  639 SKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDA-YPDSLASANGGALTIGTIDEIQKLHIRT--VPLG  714 (1096)
T ss_pred             eCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhccccccc-CCceEEEecCCceEEEEecchhhcceee--ecCC
Confidence            544433333344444444332 11111111111111111111111 1112233333333333332222211111  1223


Q ss_pred             ceeeeeccCCCCCeEEEecC-----------C---CeEEEEEcCCCeeeeEEeec--cceeceeEEEEcCC-CCEEEEec
Q psy988          251 RKISGIEPMPGEDKILVTSN-----------D---SRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHD-GKYIVSGS  313 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~-----------d---~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~  313 (408)
                      ..+..+++.+....+.+.+.           .   ..++++|-++.+.....+..  .....+.++.|..| +.++++|.
T Consensus       715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT  794 (1096)
T KOG1897|consen  715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT  794 (1096)
T ss_pred             CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence            34455566554444443321           1   24778887777665544322  22334556678887 77888775


Q ss_pred             ----------CCceEEEeeccccCccccccccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          314 ----------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       314 ----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                                ..|.|.+|.+...            ..++....  -.+.+.++.--                 +|++||.
T Consensus       795 ~~v~Pde~ep~~GRIivfe~~e~------------~~L~~v~e~~v~Gav~aL~~f-----------------ngkllA~  845 (1096)
T KOG1897|consen  795 GLVYPDENEPVNGRIIVFEFEEL------------NSLELVAETVVKGAVYALVEF-----------------NGKLLAG  845 (1096)
T ss_pred             EeeccCCCCcccceEEEEEEecC------------Cceeeeeeeeeccceeehhhh-----------------CCeEEEe
Confidence                      2578888888762            12222221  23455555443                 5777766


Q ss_pred             EecCCeEEEEeCCCCC
Q psy988          382 ADFNGVIRVFLNKTKP  397 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~~  397 (408)
                      -  ...|++|+..+.+
T Consensus       846 I--n~~vrLye~t~~~  859 (1096)
T KOG1897|consen  846 I--NQSVRLYEWTTER  859 (1096)
T ss_pred             c--CcEEEEEEccccc
Confidence            5  4589999988774

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.34  E-value=0.0012  Score=55.72  Aligned_cols=176  Identities=19%  Similarity=0.254  Sum_probs=111.4

Q ss_pred             ceEEEEeccCCeeEeEEE--eCCceEEE---EEcCC---CCCEEEEEeC----------CCcEEEEecCCC-----Ccee
Q psy988            3 KTVRLWHISRKECLCCFQ--HIDFVTAI---CFHPR---DDRYFLSGSL----------DGKLRLWNIPDK-----KVAV   59 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~--h~~~v~~~---~~sp~---~~~~l~t~~~----------dg~i~iw~~~~~-----~~~~   59 (408)
                      ..|++.|..+.+.+..+.  ....+.++   .|..+   ...+|+.|..          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468999999999887776  33445544   44431   1577887754          288999999884     2222


Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND  138 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  138 (408)
                      . .-....++|++++-- ++. |+++ ..+.|.+|++...+ .........       ...+.++...  ++++++|...
T Consensus        82 i-~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~-------~~~i~sl~~~--~~~I~vgD~~  148 (321)
T PF03178_consen   82 I-HSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDS-------PFYITSLSVF--KNYILVGDAM  148 (321)
T ss_dssp             E-EEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-B-------SSSEEEEEEE--TTEEEEEESS
T ss_pred             E-EEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecc-------eEEEEEEecc--ccEEEEEEcc
Confidence            1 223346778888765 444 4444 45899999999887 333322211       1256666554  6699999888


Q ss_pred             CeEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          139 SRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       139 g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                      ..+.++..+. ...+..+........+.++.+-++++.+++++.+|.+.++...
T Consensus       149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            8888875543 2223333333334557788888666799999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=0.0018  Score=55.98  Aligned_cols=263  Identities=11%  Similarity=0.094  Sum_probs=161.1

Q ss_pred             EEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988            5 VRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV   83 (408)
Q Consensus         5 i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   83 (408)
                      +.+++..+.+....+.-......+...| ++..+ ++-.....+..-+.......  .....-......++.++.+..++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~n~~~--~~~~~g~~~p~~i~v~~~~~~vy   89 (381)
T COG3391          13 VSVINTGTNKVTAAISLGRGPGGVAVNP-DGTQVYVANSGSNDVSVIDATSNTVT--QSLSVGGVYPAGVAVNPAGNKVY   89 (381)
T ss_pred             eEEEeecccEEEEEeecCCCCceeEEcC-ccCEEEEEeecCceeeecccccceee--eeccCCCccccceeeCCCCCeEE
Confidence            5667777777777776444677788888 66433 33333334555444421111  11111113445677888887555


Q ss_pred             EEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCcccceeecCcc
Q psy988           84 VGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        84 ~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ... .++.|.+.|..+...........         ....++++|+++.+.++..   ++.+.+.|..+++.........
T Consensus        90 v~~~~~~~v~vid~~~~~~~~~~~vG~---------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~  160 (381)
T COG3391          90 VTTGDSNTVSVIDTATNTVLGSIPVGL---------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN  160 (381)
T ss_pred             EecCCCCeEEEEcCcccceeeEeeecc---------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence            544 45899999977665544443322         5677899999998888754   6899999999888777633222


Q ss_pred             ccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      .   ...++++|+|+.++... .++.|.+.|........               .....                     
T Consensus       161 ~---P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---------------~~~~~---------------------  201 (381)
T COG3391         161 T---PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---------------GSVGS---------------------  201 (381)
T ss_pred             C---cceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---------------ccccc---------------------
Confidence            1   26789999999777665 67899999865421110               00000                     


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecC---CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC-
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-  314 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  314 (408)
                             ..........+.++|++.++.+...   ++.+...|..++.....-...... ....+..+|+|+.+.+... 
T Consensus       202 -------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         202 -------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             -------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC
Confidence                   0011223344556666665555432   368999999887766552221122 3446799999999988744 


Q ss_pred             CceEEEeecccc
Q psy988          315 NQCIYIWKTHHD  326 (408)
Q Consensus       315 dg~i~iw~~~~~  326 (408)
                      .+.+.+-|..+.
T Consensus       274 ~~~V~vid~~~~  285 (381)
T COG3391         274 GGTVSVIDGATD  285 (381)
T ss_pred             CCeEEEEeCCCC
Confidence            478888887764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.29  E-value=0.00018  Score=62.23  Aligned_cols=190  Identities=22%  Similarity=0.229  Sum_probs=109.8

Q ss_pred             eecCCceeeEEEEEecCCCEEEEEec---C-CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-
Q psy988           62 EVEGQTKLITAANFCENGKFAVVGSY---D-GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-  136 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  136 (408)
                      .+..-...+..-+|+|+++.++..+.   . ..+.++++.+++........         +.-..-.|+|||++|+.+. 
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---------g~~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---------GNNGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---------CccCCccCCCCCCEEEEEEC
Confidence            44445566777889999987665432   2 46889999887765544321         2344568999999888774 


Q ss_pred             CCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cce--EEEeeeccceeeeeecccCCCcccccc
Q psy988          137 NDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQC--IYIWKTHHDYAKFSSVRRDRNDFWEGI  211 (408)
Q Consensus       137 ~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (408)
                      .||  .|+++|+..++..+ +......  -..-.|+|||++++..+. .|.  |.+++.+...                 
T Consensus       258 rdg~~~iy~~dl~~~~~~~-Lt~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-----------------  317 (425)
T COG0823         258 RDGSPDIYLMDLDGKNLPR-LTNGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-----------------  317 (425)
T ss_pred             CCCCccEEEEcCCCCccee-cccCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----------------
Confidence            455  46677887766433 3332222  124579999999887654 444  4444443221                 


Q ss_pred             ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CCe--EEEEEcCCCeeeeEE
Q psy988          212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DSR--IRLYDLRDLNLSCKY  288 (408)
Q Consensus       212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~  288 (408)
                            +..+.++..                         .-..-.++|||++|+..+. +|.  |.+.|+.++...+.+
T Consensus       318 ------~~riT~~~~-------------------------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         318 ------VTRLTFSGG-------------------------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             ------eeEeeccCC-------------------------CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence                  111111111                         0113456777777776553 343  677777665543333


Q ss_pred             eeccceeceeEEEEcCCCCEEEEecC
Q psy988          289 KGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                      ....   ......|.|+|+.+...+.
T Consensus       367 t~~~---~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         367 TSTY---LNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cccc---cCCCCCcCCCCceEEEecc
Confidence            3221   2224578889988775443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.26  E-value=0.0031  Score=56.84  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCce--ee-------EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK--LI-------TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~v-------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      +..++.++.++.|.-.|..+++.+-.........  ..       ..+++  .+..++.++.|+.+.-.|.++++.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            3456677778899999999987653222221111  00       01122  2346778888999999999999877655


Q ss_pred             EEeeccccccCCCCeEEEeeCC--CCCeEEEeeC------CCeEEEEEccCcccceeec
Q psy988          106 HVRSTRGKNATGRKISGIEPMP--GEDKILVTSN------DSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  156 (408)
                      .......    ...+.   -+|  .+..++++..      +|.|.-+|.++++.+-.+.
T Consensus       147 ~~~~~~~----~~~~t---ssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       147 KNGDYKA----GYTIT---AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccc----ccccc---CCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4321110    00111   111  1335555532      6899999999998776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1008|consensus

Probab=98.26  E-value=7.8e-07  Score=76.50  Aligned_cols=203  Identities=12%  Similarity=0.151  Sum_probs=121.4

Q ss_pred             eeeEEEEEecC--CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEe----eCCCe
Q psy988           68 KLITAANFCEN--GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVT----SNDSR  140 (408)
Q Consensus        68 ~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~----~~dg~  140 (408)
                      ..+.|+++.-+  ...++.|..+|.|.+-.++.....      ......++..+.++++|++- .+.|++|    -.|..
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            34666666543  346888999999999888764432      11112344568999999984 4566666    23678


Q ss_pred             EEEEEccCc--ccce--eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          141 IRLYDLRDL--NLSC--KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       141 i~i~d~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      +.|||+.++  .+..  .+.. .......+++|..+.+.+.+|.....+.++|++.....             ...-...
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-------------~~svnTk  196 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-------------VSSVNTK  196 (783)
T ss_pred             ccceecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-------------hhhhhhh
Confidence            999999876  2221  1222 11223446888888999999999889999998632110             0111111


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEE-cCCCe-eeeEEeeccc
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYD-LRDLN-LSCKYKGYVN  293 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~-~~~~~~~~~~  293 (408)
                      .+..+.                                   +.| .+.++++ ..||.|.+|| .++-+ ++..+....+
T Consensus       197 ~vqG~t-----------------------------------Vdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N  240 (783)
T KOG1008|consen  197 YVQGIT-----------------------------------VDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNEN  240 (783)
T ss_pred             hcccce-----------------------------------ecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCC
Confidence            223333                                   344 3445554 4599999999 33322 2222211111


Q ss_pred             --eeceeEEEEcCCCC-EEEEecC-CceEEEeecccc
Q psy988          294 --VSSQIKASFSHDGK-YIVSGSE-NQCIYIWKTHHD  326 (408)
Q Consensus       294 --~~~v~~~~~s~~~~-~l~~~~~-dg~i~iw~~~~~  326 (408)
                        ...+..++|+|... ++++... .++|+++++...
T Consensus       241 ~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  241 KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             CcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence              22477899999543 4555554 478999998754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.23  E-value=0.0019  Score=53.27  Aligned_cols=242  Identities=15%  Similarity=0.124  Sum_probs=122.8

Q ss_pred             CCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE---ee
Q psy988           34 DDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV---RS  109 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~  109 (408)
                      .++.|+.|..+| +.+++... ....  ...  +...|..+...++-+.|++-+ |+.+.++++...........   ..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~--~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPT--RIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccce--eEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            577899999888 99999832 2222  122  233399999999877777664 59999999887654432110   00


Q ss_pred             ---ccccccCCCCeEEEe--eCCCCCeEEEeeCCCeEEEEEccCcccc--eeecCccccccceEEEEecCCCEEEEeecC
Q psy988          110 ---TRGKNATGRKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       110 ---~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                         ..........+...+  -...+...++......|.+|........  ..++...-...+..++|.  ++.++.|..+
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence               000111112344443  1223334444444568999888753111  222222223446678887  5567777654


Q ss_pred             ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec------CCCC--CCCceeeecCCCceee
Q psy988          183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM------EPDK--SESTGYVLNATGRKIS  254 (408)
Q Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~i~  254 (408)
                       ...+.|+.++.......................++..+... ++++++...      +...  .......+.   ..+.
T Consensus       158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~---~~p~  232 (275)
T PF00780_consen  158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYDNIGVFVNKNGEPSRKSTIQWS---SAPQ  232 (275)
T ss_pred             -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEecceEEEEcCCCCcCcccEEEcC---Cchh
Confidence             47888887543322111000000000111112223333332 344444320      0001  111111121   2333


Q ss_pred             eeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988          255 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  291 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  291 (408)
                      ++++  ...+++.... +.|.||++.++++++.+...
T Consensus       233 ~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  233 SVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            4444  2346666555 55999999999998888753

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.23  E-value=0.0029  Score=55.69  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             eeEEEEEecCCCEEEEE-ecCC----EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----
Q psy988           69 LITAANFCENGKFAVVG-SYDG----RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----  138 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  138 (408)
                      .+....++|+|+++|.+ +..|    .++++|+++++.........         ....+.|.++++.|+....+     
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---------~~~~~~W~~d~~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---------KFSSVSWSDDGKGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---------ESEEEEECTTSSEEEEEECSTTTSS
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---------ccceEEEeCCCCEEEEEEeCccccc
Confidence            44567899999998865 3333    69999999987654332111         12338999998888776432     


Q ss_pred             ------CeEEEEEccCcccc--eeecCccccccceEEEEecCCCEEEEeec---C-ceEEEeeeccc
Q psy988          139 ------SRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSE---N-QCIYIWKTHHD  193 (408)
Q Consensus       139 ------g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~  193 (408)
                            ..|+.|.+.+....  ..+...........+..++++++|+....   + ..+++.++...
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                  23778888766543  33444443332456888999999876543   2 45778887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.22  E-value=0.0029  Score=55.05  Aligned_cols=51  Identities=14%  Similarity=0.148  Sum_probs=36.3

Q ss_pred             cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           46 KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        46 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .|.||+....... ...+..  +.+.++.|+.+.. |+....||.++++|+....
T Consensus        62 ~I~iys~sG~ll~-~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSSGKLLS-SIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCCCCEeE-EEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce
Confidence            4889987655432 233333  7899999988654 5666799999999987544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.21  E-value=0.0023  Score=53.51  Aligned_cols=246  Identities=15%  Similarity=0.054  Sum_probs=107.9

Q ss_pred             eccCCeeEeEEEeC------CceEEEEEcCCCCCEEEEEeC-C--CcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            9 HISRKECLCCFQHI------DFVTAICFHPRDDRYFLSGSL-D--GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         9 d~~~~~~~~~~~h~------~~v~~~~~sp~~~~~l~t~~~-d--g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      |..+|..+..+.+.      ..-+.=+|.+ +|+.|+.++. |  ..+.+.|+.+++...+....+  .......++|++
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~-dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~   92 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTD-DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDD   92 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-T-TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTS
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCC-CCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCC
Confidence            66777777776522      2233346777 7766665554 4  457777888887764333221  223345677888


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEee--CCCCCeEEEee---------------------
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP--MPGEDKILVTS---------------------  136 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~---------------------  136 (408)
                      +.++-......++-.|+++.+.........        ..+-...|  +.++..++-.-                     
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYEVPD--------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE--T--------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEECCc--------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            888766666789999999877544333222        12222333  33444433221                     


Q ss_pred             -CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccceeeeeecccCCCccccc
Q psy988          137 -NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       137 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                       -...|.-.|+.+++....+...   ..+..+.|+|....+++=+..|     .-|||-+++.......+.+        
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~~~---~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--------  233 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFEDT---DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--------  233 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEEES---S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---------
T ss_pred             CCCceEEEEECCCCceeEEEecC---ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--------
Confidence             0123555566766654444322   2244578888655555443333     2367776654332221110        


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      - .....+.-=-|.|+|..+....                              ..-++.+..|.-+|..+++.......
T Consensus       234 ~-~~~e~~gHEfw~~DG~~i~y~~------------------------------~~~~~~~~~i~~~d~~t~~~~~~~~~  282 (386)
T PF14583_consen  234 R-MEGESVGHEFWVPDGSTIWYDS------------------------------YTPGGQDFWIAGYDPDTGERRRLMEM  282 (386)
T ss_dssp             ---TTEEEEEEEE-TTSS-EEEEE------------------------------EETTT--EEEEEE-TTT--EEEEEEE
T ss_pred             C-CCCcccccccccCCCCEEEEEe------------------------------ecCCCCceEEEeeCCCCCCceEEEeC
Confidence            0 1123344446777777664210                              00123345577777777765432222


Q ss_pred             ccceeceeEEEEcCCCCEEEE
Q psy988          291 YVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~~l~~  311 (408)
                      .    ......-++||++++-
T Consensus       283 p----~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  283 P----WCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             -----SEEEEEE-TTSSEEEE
T ss_pred             C----ceeeeEEcCCCCEEEe
Confidence            1    2335666788888764

>KOG3621|consensus

Probab=98.20  E-value=1.1e-05  Score=70.46  Aligned_cols=119  Identities=14%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                      +.--+++..+++++.|+.-|.+++|+-..++....-... ....+..++.|++..++|+|+..|.|.++-++...+... 
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~-  113 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL-  113 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc-
Confidence            333455667889999999999999998776654433322 333556678899999999999999999999987533211 


Q ss_pred             cccCccccceee-eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          333 VRRDRNDFWEGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       333 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                            ..+... ..|...|++++|++                ++..+.+|..-|.|..-.+.+
T Consensus       114 ------~~~t~~d~~~~~rVTal~Ws~----------------~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 ------DYVTPCDKSHKCRVTALEWSK----------------NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ------eeeccccccCCceEEEEEecc----------------cccEEeecCCCceEEEEEech
Confidence                  111111 23788999999999                999999999999999988887

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.16  E-value=0.0028  Score=52.36  Aligned_cols=230  Identities=10%  Similarity=0.015  Sum_probs=124.4

Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988           28 ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  107 (408)
                      ..|.|..+.++.+--..+.|.-|+..+++..   .+. +...+.++..-..+..|+++..  -+.+++.++........ 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~-  102 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR---VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA-  102 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE---EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEec-
Confidence            3567733335555556788999998877644   222 2233444444444555555432  35666665444322111 


Q ss_pred             eeccccccCCCCeEEEeeCCCCCeEEEeeC-----------CCeEEEEEccCcccceeecCccccccceEEEEecCCCEE
Q psy988          108 RSTRGKNATGRKISGIEPMPGEDKILVTSN-----------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus       108 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      ...  ........+.....|+|.+-+....           -|.|+.+|. .+.....+..+.  ...+.++||||++.|
T Consensus       103 ~~~--~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~--~~~NGla~SpDg~tl  177 (307)
T COG3386         103 EPE--DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL--TIPNGLAFSPDGKTL  177 (307)
T ss_pred             ccc--CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE--EecCceEECCCCCEE
Confidence            111  1111246777888898876555422           133444454 344444444422  225579999999988


Q ss_pred             EEeecC-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          177 VSGSEN-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       177 ~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      +.+... +.|.-|++....                ...... ...+                       ......+..-.
T Consensus       178 y~aDT~~~~i~r~~~d~~~----------------g~~~~~-~~~~-----------------------~~~~~~G~PDG  217 (307)
T COG3386         178 YVADTPANRIHRYDLDPAT----------------GPIGGR-RGFV-----------------------DFDEEPGLPDG  217 (307)
T ss_pred             EEEeCCCCeEEEEecCccc----------------CccCCc-ceEE-----------------------EccCCCCCCCc
Confidence            887654 677777664200                000000 0000                       11122333445


Q ss_pred             eccCCCCCeEEEecCCC-eEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEe
Q psy988          256 IEPMPGEDKILVTSNDS-RIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSG  312 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~  312 (408)
                      ++...+|.+.+++..+| .|.+|+.. ++++..+..+..  .+++++|- |+.+.|++.
T Consensus       218 ~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~--~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         218 MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK--RPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC--CCccceEeCCCcCEEEEE
Confidence            56666777775544443 89999988 888888876543  56677774 344555443

>KOG1897|consensus

Probab=98.16  E-value=0.0062  Score=56.37  Aligned_cols=324  Identities=12%  Similarity=0.066  Sum_probs=165.0

Q ss_pred             eCCceEEEEEcCC--CCC---EEEEEeCCCcEEEEec-CCCCceeeeeec--CCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           21 HIDFVTAICFHPR--DDR---YFLSGSLDGKLRLWNI-PDKKVAVWNEVE--GQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        21 h~~~v~~~~~sp~--~~~---~l~t~~~dg~i~iw~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      -...|.|+.++|.  +.+   +++.|..+..+.+--. .+........+.  .-+..|....|-.|..+|+++..||.+.
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~  608 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL  608 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence            4577999999983  333   7888888766555443 333322212122  2345566667777789999999999998


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      -+-++.......-..+.    .-...++.--.|+..++.-+.+..|.-..+|.-+. +....--.......+  +.|+.+
T Consensus       609 ~fv~d~~tg~lsd~Kk~----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~kev~~~--c~f~s~  681 (1096)
T KOG1897|consen  609 YFVLDINTGQLSDRKKV----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSLKEVNHM--CPFNSD  681 (1096)
T ss_pred             EEEEEcccceEcccccc----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccchHHhhhh--cccccc
Confidence            77665433221111111    11123555556666666555565666666666542 322211110000001  122221


Q ss_pred             --CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC----------CCCCC
Q psy988          173 --GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME----------PDKSE  240 (408)
Q Consensus       173 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~  240 (408)
                        ...++.+. .+.+.+..+..-+....          +++ .-....+.+++.+....+.+...          .....
T Consensus       682 a~~d~l~~~~-~~~l~i~tid~iqkl~i----------rtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~  749 (1096)
T KOG1897|consen  682 AYPDSLASAN-GGALTIGTIDEIQKLHI----------RTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEV  749 (1096)
T ss_pred             cCCceEEEec-CCceEEEEecchhhcce----------eee-cCCCChhheEecccceEEEEEecccccchhhcCCcceE
Confidence              22344443 34566665543211110          110 01112223333332221111100          01111


Q ss_pred             CceeeecC--------C-------CceeeeeccCCC-CCeEEEec----------CCCeEEEEEcCCCeeeeEEeeccce
Q psy988          241 STGYVLNA--------T-------GRKISGIEPMPG-EDKILVTS----------NDSRIRLYDLRDLNLSCKYKGYVNV  294 (408)
Q Consensus       241 ~~~~~~~~--------~-------~~~i~~~~~~~~-~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~  294 (408)
                      ....++..        |       ...+.+..|..| +.++++|+          ..|.|.+|....++.+.....+.-.
T Consensus       750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~  829 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK  829 (1096)
T ss_pred             EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence            11111111        1       123444557777 77777775          2488999988874444444333333


Q ss_pred             eceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988          295 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  374 (408)
Q Consensus       295 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~  374 (408)
                      +.+.++.. -+|++||.-  ...|++|+..+.            +.++.-..|..++..+...-                
T Consensus       830 Gav~aL~~-fngkllA~I--n~~vrLye~t~~------------~eLr~e~~~~~~~~aL~l~v----------------  878 (1096)
T KOG1897|consen  830 GAVYALVE-FNGKLLAGI--NQSVRLYEWTTE------------RELRIECNISNPIIALDLQV----------------  878 (1096)
T ss_pred             cceeehhh-hCCeEEEec--CcEEEEEEcccc------------ceehhhhcccCCeEEEEEEe----------------
Confidence            34444322 267777754  557999999875            34455556777888888877                


Q ss_pred             cccEEEEEecCCeEEEEeCC
Q psy988          375 TGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       375 ~~~~l~s~~~dg~v~iw~~~  394 (408)
                      .|..++.|..=+++.+-..+
T Consensus       879 ~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  879 KGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             cCcEEEEeeccceEEEEEEe
Confidence            77788888776666655443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.15  E-value=0.00057  Score=62.99  Aligned_cols=140  Identities=17%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             eCCCeEEEEEccCcccceeecCccccccceEEEEecC-------CCEEEEeecCceEEEeeeccceeeeeecccCCCccc
Q psy988          136 SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW  208 (408)
Q Consensus       136 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (408)
                      .....|+-.|++.|+.+..+..+.... +.  .+.|+       ...-+.|-.+..+..||.+-...+....      ..
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~------~~  571 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIP-VV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS------QS  571 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcc-ee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeec------cc
Confidence            346789999999999999888765432 33  34443       2345677778889999987432110000      00


Q ss_pred             cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE
Q psy988          209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  288 (408)
Q Consensus       209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  288 (408)
                      ..+                                    .......|++-+.+ .+||+|+.+|.||+||--..+....+
T Consensus       572 k~Y------------------------------------~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~l  614 (794)
T PF08553_consen  572 KQY------------------------------------SSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTAL  614 (794)
T ss_pred             ccc------------------------------------ccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcC
Confidence            000                                    11122333333333 35889999999999994332222233


Q ss_pred             eeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      ++.  ..+|+.+..+.||++|++.+ +..+.+++..
T Consensus       615 p~l--G~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  615 PGL--GDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCC--CCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            333  35899999999999988765 5577888764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.13  E-value=0.00087  Score=56.63  Aligned_cols=132  Identities=18%  Similarity=0.238  Sum_probs=85.8

Q ss_pred             ceEEEEeccCC-----ee--EeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEE
Q psy988            3 KTVRLWHISRK-----EC--LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         3 g~i~vwd~~~~-----~~--~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~   74 (408)
                      |.|.++++...     +.  +......++|++++--  ++. |+.+. .+.|.+|++...+ ......... ...+.++.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDS-PFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-B-SSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecc-eEEEEEEe
Confidence            88999999884     22  3334488999999876  344 44443 3899999999888 543333322 22455555


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCee-eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKY-HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      .  .+++++.|.....+.++..+.... ..... ..     .....+.++.+.++++.++++..+|.+.++...
T Consensus       137 ~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va-~d-----~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  137 V--FKNYILVGDAMKSVSLLRYDEENNKLILVA-RD-----YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E--ETTEEEEEESSSSEEEEEEETTTE-EEEEE-EE-----SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             c--cccEEEEEEcccCEEEEEEEccCCEEEEEE-ec-----CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            4  466999999888888886554222 22111 11     112368888888666799999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.00014  Score=62.92  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=100.8

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-eCCCc--EEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-SLDGK--LRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-~~dg~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .+.++|+++++........+.-...+|+| ||+.|+.+ ..||.  |.+.|+.++...   .+..-.+.-..-.|+|||+
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~~~Ps~spdG~  294 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGINTSPSWSPDGS  294 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEEEcCCCCcce---ecccCCccccCccCCCCCC
Confidence            48889999988888877777777889999 77766654 44665  666677776643   3443333344778999999


Q ss_pred             EEEEEecC-C--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCe--EEEEEccCccccee
Q psy988           81 FAVVGSYD-G--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSR--IRLYDLRDLNLSCK  154 (408)
Q Consensus        81 ~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~  154 (408)
                      .++..+.. |  .|.+.+.+.... .......        +.-..-.|+|+|++++..+. +|.  |.+.|+.++...+.
T Consensus       295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~  365 (425)
T COG0823         295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI  365 (425)
T ss_pred             EEEEEeCCCCCcceEEECCCCCce-eEeeccC--------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence            98876554 4  455666665543 1111111        11126678999999988764 344  66667766554333


Q ss_pred             ecCccccccceEEEEecCCCEEEEeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      +.....   ...-.+.++++.++..+.
T Consensus       366 lt~~~~---~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         366 LTSTYL---NESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cccccc---CCCCCcCCCCceEEEecc
Confidence            332222   112467778877665543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.09  E-value=0.00078  Score=57.65  Aligned_cols=189  Identities=12%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             CCCCCeEEEe---------eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceee
Q psy988          126 MPGEDKILVT---------SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       126 ~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (408)
                      |||+++++..         +..+.+.++|+++++.......   ........|+|+|+.++... ++.|++.+..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence            4677776663         2246799999998765443333   23355789999999998885 578999988665322


Q ss_pred             eeecccCC-Cccccccc-----cc-cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc-----eeeeeccCCCCCe
Q psy988          197 FSSVRRDR-NDFWEGIK-----AH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR-----KISGIEPMPGEDK  264 (408)
Q Consensus       197 ~~~~~~~~-~~~~~~~~-----~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~  264 (408)
                      .  +..+. ........     .. -..-..+.|+||+++++...-+...............     .+..+.+-.-   
T Consensus        77 ~--lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~---  151 (353)
T PF00930_consen   77 Q--LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA---  151 (353)
T ss_dssp             E--SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT---
T ss_pred             E--eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC---
Confidence            1  11111 00000000     00 1123568899999999876555444433333322111     2333333221   


Q ss_pred             EEEecCCC--eEEEEEcCCCeeeeEEee---ccceeceeEEEEcCCCCEEEEe--cCC---ceEEEeecccc
Q psy988          265 ILVTSNDS--RIRLYDLRDLNLSCKYKG---YVNVSSQIKASFSHDGKYIVSG--SEN---QCIYIWKTHHD  326 (408)
Q Consensus       265 l~~~~~d~--~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~--~~d---g~i~iw~~~~~  326 (408)
                         |..+.  .+.|+|+.+++....-..   ......+..+.|+++++.|+..  +.+   ..+.+.|..++
T Consensus       152 ---G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg  220 (353)
T PF00930_consen  152 ---GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG  220 (353)
T ss_dssp             ---TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred             ---CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence               22222  466789988776422211   2334578899999999944432  222   24666676654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0024  Score=55.18  Aligned_cols=183  Identities=13%  Similarity=0.107  Sum_probs=124.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ++.|.+.|..+.+......-......++++| +++.+..+..   ++++.+.|..+......  ...-..+ ..+++.|+
T Consensus        95 ~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG~~P-~~~a~~p~  170 (381)
T COG3391          95 SNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT--IPVGNTP-TGVAVDPD  170 (381)
T ss_pred             CCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE--EecCCCc-ceEEECCC
Confidence            4678888888888888777555788999999 6655655544   68888888888877643  2222233 88999999


Q ss_pred             CCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---CeEEEEEccCccccee
Q psy988           79 GKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---SRIRLYDLRDLNLSCK  154 (408)
Q Consensus        79 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~  154 (408)
                      |+.++... .++.+.+.|........ ...   ............+.+.|++.++.+....   +.+...|..++.....
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCCcceec-ccc---ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            99777665 67899999977654432 110   0011112355678899999988776443   5899999988776654


Q ss_pred             ecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccc
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHD  193 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  193 (408)
                      -...... ....+..+|+|+++.+... .+.+.+-|..+.
T Consensus       247 ~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         247 DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            2222221 3456889999999888744 477888887653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.05  E-value=0.0061  Score=52.32  Aligned_cols=98  Identities=10%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC---Cchh-hhhccCCCC
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP---CPEL-IIAQMEPDK  371 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~-~~~~~~~~~  371 (408)
                      .+.+++.+|++++.|+...=|.|.++|+..+            ..++.++|-.+.  .+.|-.   .+.. .........
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~------------~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~  374 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARG------------IVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKS  374 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCC------------hhhhhhccCccc--eEEEEEeecccccccccccccCC
Confidence            4668999999999999888899999999987            455555554432  122211   0000 000000000


Q ss_pred             CCCccc-EEEEEecCCeEEEEeCCCCCCccccccccC
Q psy988          372 SESTGY-VLVSADFNGVIRVFLNKTKPKHSSLPVSAL  407 (408)
Q Consensus       372 ~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~s~~  407 (408)
                      ...... +++-+-.-|.|.||.++.++.+..+.++..
T Consensus       375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~  411 (415)
T PF14655_consen  375 SSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVGKG  411 (415)
T ss_pred             CCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence            000112 344566789999999999999998887653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.03  E-value=0.0046  Score=53.19  Aligned_cols=170  Identities=16%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC------CceeeEEEEEec-----CC---CE
Q psy988           17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG------QTKLITAANFCE-----NG---KF   81 (408)
Q Consensus        17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~   81 (408)
                      ..+. ..++|++++.|  |=-++|.|..+|.+.|.|++....+....+..      ....++++.|.-     |+   -.
T Consensus        80 ~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            3344 67999999998  56689999999999999997776654433433      345688888862     22   46


Q ss_pred             EEEEecCCEEEEEeccC-CeeeEEEEEeeccccccCCCCeEEEe-eCCC--------------------CCeEEEeeCCC
Q psy988           82 AVVGSYDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGRKISGIE-PMPG--------------------EDKILVTSNDS  139 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--------------------~~~l~~~~~dg  139 (408)
                      +++|...|.+.+|.+.- .............  ..+.+++..+. ++.+                    -+.+++...+.
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            88999999999998752 1111111111111  12233444433 2111                    12244445567


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEE-----ecCCCEEEEeecCceEEEeeecc
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASF-----SHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      .++++...+.+...+....  ......+.+     ...+..|++-..+|.+++|.+..
T Consensus       236 ~irv~~~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             EEEEE-TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             ceEEEeCCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            8999999877765544321  111223344     23566788888999999999854

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.96  E-value=3.8e-05  Score=41.15  Aligned_cols=38  Identities=39%  Similarity=0.756  Sum_probs=32.7

Q ss_pred             CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy988           13 KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWN   51 (408)
Q Consensus        13 ~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~   51 (408)
                      ++++..+. |...|.++.|+| ++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            34555665 899999999999 889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.95  E-value=0.0082  Score=50.39  Aligned_cols=276  Identities=13%  Similarity=0.075  Sum_probs=117.7

Q ss_pred             ceEEEEeccCCeeEeEEEeCC-ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe--cCC
Q psy988            3 KTVRLWHISRKECLCCFQHID-FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC--ENG   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~-~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~   79 (408)
                      ..+.+.|+++++..+...+.+ ......++| +.+.++-......++--|+++.+...+..+.  ...+-...|.  .++
T Consensus        60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~  136 (386)
T PF14583_consen   60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDC  136 (386)
T ss_dssp             -EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTS
T ss_pred             cceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCc
Confidence            346777899999888887442 233567778 6677665555678888999998765433333  3344334553  345


Q ss_pred             CEEEEEec----------------------CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC
Q psy988           80 KFAVVGSY----------------------DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN  137 (408)
Q Consensus        80 ~~l~~~~~----------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  137 (408)
                      ..++-.-.                      ...|.-.|+.+++.......         ...+..+.|+|....+++=+.
T Consensus       137 t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~---------~~wlgH~~fsP~dp~li~fCH  207 (386)
T PF14583_consen  137 TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED---------TDWLGHVQFSPTDPTLIMFCH  207 (386)
T ss_dssp             SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE---------SS-EEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec---------CccccCcccCCCCCCEEEEec
Confidence            55433211                      12344445555543332221         235677889996665554322


Q ss_pred             ----CC-eEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeec-----CceEEEeeeccceeeeeecccCCCc
Q psy988          138 ----DS-RIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-----NQCIYIWKTHHDYAKFSSVRRDRND  206 (408)
Q Consensus       138 ----dg-~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~  206 (408)
                          +. .-|||-+++ +.....+..+.....+..=-|.|||..|..-+.     +..|.-+|+.++....         
T Consensus       208 EGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~---------  278 (386)
T PF14583_consen  208 EGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR---------  278 (386)
T ss_dssp             -S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE---------
T ss_pred             cCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE---------
Confidence                22 135665543 223333333333333444568999987765322     3356666665532211         


Q ss_pred             cccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee
Q psy988          207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC  286 (408)
Q Consensus       207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  286 (408)
                          + .......-+..+++++.++.-..+...               .++ .+++. .+  -.+-.|+++++..++...
T Consensus       279 ----~-~~~p~~~H~~ss~Dg~L~vGDG~d~p~---------------~v~-~~~~~-~~--~~~p~i~~~~~~~~~~~~  334 (386)
T PF14583_consen  279 ----L-MEMPWCSHFMSSPDGKLFVGDGGDAPV---------------DVA-DAGGY-KI--ENDPWIYLFDVEAGRFRK  334 (386)
T ss_dssp             ----E-EEE-SEEEEEE-TTSSEEEEEE--------------------------------------EEEEEETTTTEEEE
T ss_pred             ----E-EeCCceeeeEEcCCCCEEEecCCCCCc---------------ccc-ccccc-ee--cCCcEEEEeccccCceee
Confidence                0 011123345556677666532211000               000 00000 00  123467777777665432


Q ss_pred             EEeecc---------ceeceeEEEEcCCCCEEE-EecCCceEEEeecc
Q psy988          287 KYKGYV---------NVSSQIKASFSHDGKYIV-SGSENQCIYIWKTH  324 (408)
Q Consensus       287 ~~~~~~---------~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~  324 (408)
                      .. .|.         ....=....|+|||++++ .+...|...||-++
T Consensus       335 l~-~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  335 LA-RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EE-E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ee-eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            21 111         000112579999999876 45567776666543

>KOG2444|consensus

Probab=97.95  E-value=1e-05  Score=60.92  Aligned_cols=107  Identities=12%  Similarity=0.075  Sum_probs=67.0

Q ss_pred             CCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceecee-EEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccc
Q psy988          262 EDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQI-KASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND  339 (408)
Q Consensus       262 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  339 (408)
                      +..+++|+.+|.|.+|...-. .....+.....  .+. -+.--.++.+..++..||.|+.|++.-.            +
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~------------k  135 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN------------K  135 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEEeccCCceeeeccccC------------c
Confidence            455888999999999987621 11111111111  121 1222235568889999999999998765            4


Q ss_pred             cceeeeeec-cceEEEEecCCchhhhhccCCCCCCCcccEEEEE--ecCCeEEEEeCCCCCC
Q psy988          340 FWEGIKAHN-AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA--DFNGVIRVFLNKTKPK  398 (408)
Q Consensus       340 ~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~v~iw~~~~~~~  398 (408)
                      .+.....|. .++..+..+.                .+++|+.+  +.|..++.|++..-..
T Consensus       136 ~~g~~g~h~~~~~e~~ivv~----------------sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  136 VLGYVGQHNFESGEELIVVG----------------SDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             eeeeeccccCCCcceeEEec----------------CCceEEeeccccchhhhhcchhhhhc
Confidence            444445555 4555555555                56777777  7788888888875543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.94  E-value=0.0092  Score=50.61  Aligned_cols=171  Identities=9%  Similarity=0.133  Sum_probs=77.1

Q ss_pred             CeeEeEEE--eC-CceEEEEEcC----------CCCCEEEEEe-CCCcEEEEecCCCCc--eeeeeecC---Cc----ee
Q psy988           13 KECLCCFQ--HI-DFVTAICFHP----------RDDRYFLSGS-LDGKLRLWNIPDKKV--AVWNEVEG---QT----KL   69 (408)
Q Consensus        13 ~~~~~~~~--h~-~~v~~~~~sp----------~~~~~l~t~~-~dg~i~iw~~~~~~~--~~~~~~~~---~~----~~   69 (408)
                      ++.++.+.  +. +.....-|+.          .+.++|+..+ .++.|+|.|+.+...  ...+.+..   +.    ..
T Consensus        52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~  131 (461)
T PF05694_consen   52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR  131 (461)
T ss_dssp             TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred             ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence            35566554  32 4555555541          1456777766 578999999985332  22222221   11    12


Q ss_pred             eEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-------
Q psy988           70 ITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-------  136 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------  136 (408)
                      ...+..-|+|+.++++-.      -|.+.+.|-++.+.........     .....-..+-|.|..+.++++.       
T Consensus       132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~-----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~  206 (461)
T PF05694_consen  132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDR-----GPQPFGYDFWYQPRHNVMISSEWGAPSMF  206 (461)
T ss_dssp             EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB------TT------EEEETTTTEEEE-B---HHHH
T ss_pred             CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCC-----CCCCCCCCeEEcCCCCEEEEeccCChhhc
Confidence            223334478888887533      2578888888766544332211     1122445677788777777763       


Q ss_pred             -------------CCCeEEEEEccCcccceeecCccccccceEEEEec--CCCEEEEe-ecCceEEEe
Q psy988          137 -------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH--DGKYIVSG-SENQCIYIW  188 (408)
Q Consensus       137 -------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-~~dg~i~i~  188 (408)
                                   ....+.+||+.+.+.++++........++.+.|..  +..+=+++ .-..+|..|
T Consensus       207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~  274 (461)
T PF05694_consen  207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF  274 (461)
T ss_dssp             TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred             ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence                         23579999999999998887654444455666654  44443333 234445444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.94  E-value=0.0049  Score=57.16  Aligned_cols=147  Identities=19%  Similarity=0.220  Sum_probs=93.1

Q ss_pred             CCCEEEEE-eCCCcEEEEecCCCCceeeeeecCCcee-eEEEEEecC-------CCEEEEEecCCEEEEEeccCCeeeEE
Q psy988           34 DDRYFLSG-SLDGKLRLWNIPDKKVAVWNEVEGQTKL-ITAANFCEN-------GKFAVVGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        34 ~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      +.++|+.- .....|+-.|++.|+++  .....|... |..+  .|+       ....+.|-.+..+..||.+-....  
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV--~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k--  565 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVV--EEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK--  565 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEE--EEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCc--
Confidence            33444433 34578999999999987  566655543 4444  343       234566777889999998854311  


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCce
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                      . ...............|++-+.+| +|++|+.+|.||+||--..+....+.+..  .+|..+..+.||+++++.+. ..
T Consensus       566 ~-v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGkwilaTc~-ty  640 (794)
T PF08553_consen  566 L-VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGKWILATCK-TY  640 (794)
T ss_pred             e-eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCcEEEEeec-ce
Confidence            0 11111111233467778776654 89999999999999954322222333333  45889999999999888765 46


Q ss_pred             EEEeeec
Q psy988          185 IYIWKTH  191 (408)
Q Consensus       185 i~i~d~~  191 (408)
                      +.+++..
T Consensus       641 LlLi~t~  647 (794)
T PF08553_consen  641 LLLIDTL  647 (794)
T ss_pred             EEEEEEe
Confidence            7777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.94  E-value=2.6e-05  Score=41.87  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=32.5

Q ss_pred             cceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          340 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       340 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      ....+..|...|.++.|++                +++++++++.||.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~----------------~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSP----------------DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECC----------------CCCEEEEecCCCeEEEcC
Confidence            4455677889999999999                788999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.92  E-value=0.0067  Score=48.28  Aligned_cols=182  Identities=14%  Similarity=0.137  Sum_probs=94.2

Q ss_pred             ceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--c--eeee--eec---CCceeeE
Q psy988            3 KTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK--V--AVWN--EVE---GQTKLIT   71 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~--~--~~~~--~~~---~~~~~v~   71 (408)
                      +.|...+. +|+.++.+.  -.+..-.|++.. ++.++++--.++.+.++++....  .  ....  .+.   .+...+-
T Consensus        44 ~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E  121 (248)
T PF06977_consen   44 GEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE  121 (248)
T ss_dssp             TEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E
T ss_pred             CEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE
Confidence            45666665 467777776  335688888886 77666666568999999984422  1  1001  111   2445689


Q ss_pred             EEEEecCCCEEEEEecCCEEEEEeccC---CeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEEEEEcc
Q psy988           72 AANFCENGKFAVVGSYDGRCIFYTTDQ---LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLR  147 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~  147 (408)
                      .++|.+.++.|+.+-...-..++.+..   .....................+.++.++|.... ++....+..|..+| .
T Consensus       122 Gla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~  200 (248)
T PF06977_consen  122 GLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-R  200 (248)
T ss_dssp             EEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--T
T ss_pred             EEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-C
Confidence            999999988888887777777777764   211111111111112223346889999997554 45556678888888 5


Q ss_pred             CcccceeecCccc-------cccceEEEEecCCCEEEEeecCceEEEe
Q psy988          148 DLNLSCKYKGYVN-------VSSQIKASFSHDGKYIVSGSENQCIYIW  188 (408)
Q Consensus       148 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~i~  188 (408)
                      +|+.+..+.-...       ....-.++|.++|+..+ .++-+..++|
T Consensus       201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            5665554332221       12244689999986444 4455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640|consensus

Probab=97.92  E-value=6.8e-05  Score=64.96  Aligned_cols=95  Identities=14%  Similarity=0.069  Sum_probs=73.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE-EEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT-AANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      -.-.|.-+.|+| .-.++|++..+|.|.+..+.-.+ .  ..+..|...++ +++|.|||+.|+.|-.||+|++.|++++
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qR-l--wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQR-L--WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEeccce-e--EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            445688899999 89999999999999999987333 2  46665666677 9999999999999999999999999988


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeC
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPM  126 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~  126 (408)
                      ........       .....|.++.|.
T Consensus        95 ~~l~~~~~-------s~e~~is~~~w~  114 (665)
T KOG4640|consen   95 GRLVSFLF-------SVETDISKGIWD  114 (665)
T ss_pred             Cceecccc-------ccccchheeecc
Confidence            76554311       112356667775

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=0.0024  Score=50.24  Aligned_cols=235  Identities=11%  Similarity=0.026  Sum_probs=126.7

Q ss_pred             CeEEEeeCCCCC-eEEEeeCCCe-EEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeec
Q psy988          119 KISGIEPMPGED-KILVTSNDSR-IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTH  191 (408)
Q Consensus       119 ~v~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  191 (408)
                      .-..++++|... -++.+-.-|+ ..++|....+....+.........-.-.|+|||.+|++.-.|     |.|-+||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            445678888554 3455544444 678899888777666544333222234799999999887543     689999987


Q ss_pred             cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC--CeEEEec
Q psy988          192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE--DKILVTS  269 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~  269 (408)
                      ....           .+-.+..|.-.-..+.+.+||+.++.......                   .+|+-  ..|=.-+
T Consensus       149 ~~fq-----------rvgE~~t~GiGpHev~lm~DGrtlvvanGGIe-------------------thpdfgR~~lNlds  198 (366)
T COG3490         149 EGFQ-----------RVGEFSTHGIGPHEVTLMADGRTLVVANGGIE-------------------THPDFGRTELNLDS  198 (366)
T ss_pred             cccc-----------eecccccCCcCcceeEEecCCcEEEEeCCcee-------------------cccccCccccchhh
Confidence            5432           23445566666667888888888765422111                   11110  0011123


Q ss_pred             CCCeEEEEEcCCCeeeeEEeec--cceeceeEEEEcCCCCEEEEecCCce----EEEeeccccCccccccccCcccccee
Q psy988          270 NDSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSENQC----IYIWKTHHDYAKFSSVRRDRNDFWEG  343 (408)
Q Consensus       270 ~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~----i~iw~~~~~~~~~~~~~~~~~~~~~~  343 (408)
                      ..-++.+.|..+|+++.+..-.  .....+..++..+||..++.+-..|-    --+--......++..+.-    ....
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~----pee~  274 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL----PEEQ  274 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCC----CHHH
Confidence            4455667776777766543322  34446777888888877765433221    000000111111100000    0011


Q ss_pred             eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          344 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       344 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      ......-|-+++.+.+               ++-..+|+-.-+..-+||..++.....-
T Consensus       275 ~~~~anYigsiA~n~~---------------~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         275 TAAFANYIGSIAANRR---------------DGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             HHHHHhhhhheeeccc---------------CCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            1123345667777762               4444445555566778999988765443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.90  E-value=0.0017  Score=43.55  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=64.0

Q ss_pred             eEEEEEec---C-CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEE
Q psy988           70 ITAANFCE---N-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  145 (408)
Q Consensus        70 v~~~~~~~---~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  145 (408)
                      |+++++..   + .+.|++|+.|..|++|+-+..  ......         ...|..+.-... ..++.+..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            56666654   2 257999999999999986542  222211         236777777664 6799999999999997


Q ss_pred             ccCcccceeecCccccccceEEEEe---cCC-CEEEEeecCceEEE
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFS---HDG-KYIVSGSENQCIYI  187 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~l~~~~~dg~i~i  187 (408)
                      -.  +.+...+....   +.++.+.   .|| ..|++|-.+|.|-+
T Consensus        70 ~~--~RlWRiKSK~~---~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   70 RS--QRLWRIKSKNQ---VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             Cc--ceeeeeccCCC---eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            63  22333333222   4444332   233 35888888887753

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.90  E-value=0.0019  Score=43.26  Aligned_cols=101  Identities=16%  Similarity=0.245  Sum_probs=63.8

Q ss_pred             eEEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           25 VTAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        25 v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      |++|++..-   +.+.|++|+.|..|++|+-+  +..  ..+.. ...|+++.-... ..++.+..+|+|-+|+-.....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~--~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIV--AEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEE--EEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee
Confidence            667776652   34789999999999999844  222  33333 445777766655 5688889999999997643222


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCC---CC-CeEEEeeCCCeEE
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMP---GE-DKILVTSNDSRIR  142 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~  142 (408)
                      ...           ....+.++.+..   +| ..|++|-.+|.|-
T Consensus        76 RiK-----------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIK-----------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eec-----------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            111           112455555443   22 2688887788764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.88  E-value=0.013  Score=50.34  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC----------------CCE
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD----------------GKY  308 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~----------------~~~  308 (408)
                      .+......+.+++.+|++++.++...=|.|.++|+.++..++.+++......-.--...+.                ..+
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            3445667889999999999999988889999999999998888887654211000011111                112


Q ss_pred             E-EEecCCceEEEeecccc
Q psy988          309 I-VSGSENQCIYIWKTHHD  326 (408)
Q Consensus       309 l-~~~~~dg~i~iw~~~~~  326 (408)
                      | +-+-.-|.|.||.++.+
T Consensus       382 LvIyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQG  400 (415)
T ss_pred             EEEEeccCCeEEEEecCCC
Confidence            3 33566788999988765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.87  E-value=0.011  Score=48.91  Aligned_cols=66  Identities=27%  Similarity=0.370  Sum_probs=44.5

Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      ..++.|+.|+.+| +.+++............         ...|..+...|+-+.|++-+ |+.++++++.......
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~---------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK---------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS   70 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee---------cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence            3578899999998 89998832222221111         12488888888777776665 4999999987654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640|consensus

Probab=97.86  E-value=7.9e-05  Score=64.56  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             CceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceece-eEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ-IKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      ...+..+.|+|.-..+|++..+|.+.++.+. .+.+.+++.+..  .+ .+++|.|||+.||+|-.||+|++-|+..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~--~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE--NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC--ccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            3456677888888889999999999999988 666677765444  34 499999999999999999999999999873

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.84  E-value=0.017  Score=50.44  Aligned_cols=51  Identities=10%  Similarity=0.180  Sum_probs=36.3

Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                      .|.+|+.. |+.+..+.-..  ..+..+.|+.+. .|++...||.+++||+....
T Consensus        62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCC-CCEeEEEEECC--CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence            58888875 55555544333  458889998865 56667789999999986443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.84  E-value=0.022  Score=51.53  Aligned_cols=191  Identities=17%  Similarity=0.123  Sum_probs=110.3

Q ss_pred             CceEEEEeccCCeeEeEEEeCC--ceEE----------EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce-
Q psy988            2 DKTVRLWHISRKECLCCFQHID--FVTA----------ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK-   68 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~--~v~~----------~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~-   68 (408)
                      ++.|+-.|.++|+.+-.+....  .+..          +++.   +..++.++.|+.+.-.|.++++..-......+.. 
T Consensus        78 ~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~  154 (527)
T TIGR03075        78 YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG  154 (527)
T ss_pred             CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEeeccccccccc
Confidence            4567777888888877665321  1111          2222   3457778889999999999998763222222211 


Q ss_pred             -eeEEEEEecCCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeeccc------------cc-----------cCCC
Q psy988           69 -LITAANFCENGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRG------------KN-----------ATGR  118 (408)
Q Consensus        69 -~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~------------~~-----------~~~~  118 (408)
                       .+++--.--++ .++.+.      .+|.|.-+|.++++............            ..           ....
T Consensus       155 ~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~  233 (527)
T TIGR03075       155 YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGG  233 (527)
T ss_pred             ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCC
Confidence             12111111144 445543      26899999999998776654332110            00           0011


Q ss_pred             Ce-EEEeeCCCCCeEEEeeCC-----C-----------eEEEEEccCcccceeecCccccc-------cceEEEEecCCC
Q psy988          119 KI-SGIEPMPGEDKILVTSND-----S-----------RIRLYDLRDLNLSCKYKGYVNVS-------SQIKASFSHDGK  174 (408)
Q Consensus       119 ~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  174 (408)
                      .+ ..+.+.|..+.++.+..+     +           .|.-.|+++++..-.++...+..       ...-+.+..+|+
T Consensus       234 ~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~  313 (527)
T TIGR03075       234 ATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGK  313 (527)
T ss_pred             CccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCc
Confidence            11 234666666677766421     2           67778999999877766533221       111123334665


Q ss_pred             ---EEEEeecCceEEEeeeccceee
Q psy988          175 ---YIVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       175 ---~l~~~~~dg~i~i~d~~~~~~~  196 (408)
                         .++.+..+|.++++|.++++..
T Consensus       314 ~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       314 PRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEEEEeCCCceEEEEECCCCcee
Confidence               6778999999999999988654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.73  E-value=0.024  Score=48.89  Aligned_cols=155  Identities=14%  Similarity=0.147  Sum_probs=89.9

Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCceeeee--ecCCceeeEEEEEec-----CCCEEEEEecCCEEEEEeccCCeee--
Q psy988           32 PRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE--VEGQTKLITAANFCE-----NGKFAVVGSYDGRCIFYTTDQLKYH--  102 (408)
Q Consensus        32 p~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~--  102 (408)
                      +++...+++||.+|.++||+...+.......  -..-..+|..+..-+     +...||+ -.-..+.+|.+......  
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            3356789999999999999986654321111  112235677666532     2234444 45678888887322111  


Q ss_pred             --EEEEEeeccccccCCCCeEEEeeCC----C-CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988          103 --TQIHVRSTRGKNATGRKISGIEPMP----G-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus       103 --~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                        ....+.....+.- ......++.-|    . ...+.+-+.||.+.+|+-+.......+....-+.   .++|.+.-..
T Consensus       113 ~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~Y~~~tDs  188 (418)
T PF14727_consen  113 HGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLCYCPRTDS  188 (418)
T ss_pred             cCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeEEeecCCE
Confidence              0011111111100 01122222222    2 3567777999999999987665555555433333   3788998889


Q ss_pred             EEEeecCceEEEeeec
Q psy988          176 IVSGSENQCIYIWKTH  191 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~  191 (408)
                      |++++.+..+.-|..+
T Consensus       189 fvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEEecCceeEEEecHH
Confidence            9999998899998764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.64  E-value=0.022  Score=51.93  Aligned_cols=127  Identities=15%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeeccccccCC
Q psy988           44 DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGKNATG  117 (408)
Q Consensus        44 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  117 (408)
                      +|.+.-.+  .+.........+....+...+++|+|+.++...      .|..-.+|-...+....... .        .
T Consensus       328 ~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~--------g  396 (591)
T PRK13616        328 DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-E--------G  396 (591)
T ss_pred             CCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-c--------C
Confidence            56665443  333222122223334678999999999887765      24433444332222111111 0        1


Q ss_pred             CCeEEEeeCCCCCeEEEeeCC------------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceE
Q psy988          118 RKISGIEPMPGEDKILVTSND------------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  185 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  185 (408)
                      .....-.|+|+|+.+++....            +.+.+.+++.+....     .....+..+.|+|||..++... +|.|
T Consensus       397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v  470 (591)
T PRK13616        397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKV  470 (591)
T ss_pred             CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence            136677899998877766432            334444444433322     1123477899999999988765 4666


Q ss_pred             EE
Q psy988          186 YI  187 (408)
Q Consensus       186 ~i  187 (408)
                      ++
T Consensus       471 ~V  472 (591)
T PRK13616        471 YL  472 (591)
T ss_pred             EE
Confidence            66

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.63  E-value=0.03  Score=47.39  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeCC-------
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSND-------  138 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d-------  138 (408)
                      ..++|+|.|||+.+++ ...|.|++++ ..+.......... ............++++|+   ..+|++....       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            3578999999876664 6699999999 3333312211111 122333457899999994   3455544331       


Q ss_pred             --CeEEEEEccCc-------ccc-eeecC-ccccccceEEEEecCCCEEEEeecCc
Q psy988          139 --SRIRLYDLRDL-------NLS-CKYKG-YVNVSSQIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       139 --g~i~i~d~~~~-------~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg  183 (408)
                        ..|.-|.....       +.+ ..+.. .........+.|.|||.+.++.+..+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence              23444444332       111 11111 01122234689999997666655444

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.023  Score=45.37  Aligned_cols=170  Identities=12%  Similarity=0.142  Sum_probs=110.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      -...|.++.|+| +.+.|++......-.||=...|+.+....+.+. .....+.+..+|++.++--.++.+.++.++...
T Consensus        84 ~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          84 ETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            344599999999 777788877777777777777887755556653 335677888899988888888999999887664


Q ss_pred             eeEEEEEe--eccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee---ecCccc-----cccceEEEEe
Q psy988          101 YHTQIHVR--STRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK---YKGYVN-----VSSQIKASFS  170 (408)
Q Consensus       101 ~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~-----~~~~~~~~~~  170 (408)
                      ........  ..............++|.|.+..|+++-+-.-+.||..........   ...+..     ...+.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            33332221  1111111145788999999999999998888888887763321110   111111     1123456677


Q ss_pred             cC-CCEEEEeecCceEEEeeecc
Q psy988          171 HD-GKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       171 ~~-~~~l~~~~~dg~i~i~d~~~  192 (408)
                      +. +..++-+.+++.+.-.|...
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC
Confidence            64 45556666677777777654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.56  E-value=0.01  Score=54.03  Aligned_cols=159  Identities=12%  Similarity=0.090  Sum_probs=86.3

Q ss_pred             CceEEEEEcCCCCCEEEEEe------CCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCE-EEEE
Q psy988           23 DFVTAICFHPRDDRYFLSGS------LDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR-CIFY   94 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~------~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iw   94 (408)
                      ..+.+.+++| +++.+|..-      .|+.-.||-... +...  ....+.  ....-.|+|+|+.+++...... +++.
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--QVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcce--eeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            4678899999 888777655      244444443322 2222  122332  3788899999998888754322 3333


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE---EEccCcccceeec-----CccccccceE
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL---YDLRDLNLSCKYK-----GYVNVSSQIK  166 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~-----~~~~~~~~~~  166 (408)
                      +......................+.|..+.|+|||.+++... ++.|++   -....+.  ..+.     .......+..
T Consensus       425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCcccc
Confidence            322211111111111000002245799999999999988876 477777   3433443  1221     1111112467


Q ss_pred             EEEecCCCEEEEeecCceEEEeee
Q psy988          167 ASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      +.|..++.. +++..++.-.+|.+
T Consensus       502 l~W~~~~~L-~V~~~~~~~~v~~v  524 (591)
T PRK13616        502 LDWRTGDSL-VVGRSDPEHPVWYV  524 (591)
T ss_pred             ceEecCCEE-EEEecCCCCceEEE
Confidence            889998884 45555554555554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.54  E-value=0.041  Score=46.58  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeec--cceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                      .+.+++..-..+.|....+.....+......  .....+..+++.|||.+.++-+.+|.|+
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4566777666778888888755333222221  1222678999999999888877788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=97.53  E-value=0.0087  Score=54.56  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=38.7

Q ss_pred             CCCEEEEEeCC------CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC-----EEEEEeccCCee
Q psy988           34 DDRYFLSGSLD------GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG-----RCIFYTTDQLKY  101 (408)
Q Consensus        34 ~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~  101 (408)
                      ++.+++.||.+      ..+..||..+........+.........+  .-+|+..+.|+.++     .+..||..+...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            67777888754      34778888777544322222211112222  23677777887654     478888887654

>KOG4441|consensus

Probab=97.50  E-value=0.031  Score=51.04  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             CCCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEE
Q psy988           78 NGKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYD  145 (408)
Q Consensus        78 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d  145 (408)
                      .+..++.|+.+      ..+..+|..+...........       ...-.+++.. ++...++|+.+      ..+..||
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-------~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD  355 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-------PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYD  355 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-------ccccccEEEE-CCEEEEEccccCCCcccceEEEec
Confidence            45566777766      367788887764433222221       1123334443 35677778777      3577888


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeecc
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHH  192 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  192 (408)
                      ..+.+-...-.-....  ...-.-.-+|...++|+.||     .+..||..+
T Consensus       356 ~~~~~W~~~a~M~~~R--~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  356 PRTNQWTPVAPMNTKR--SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             CCCCceeccCCccCcc--ccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence            8877643321111111  11111233777888898887     366676654

>PHA02713 hypothetical protein; Provisional

Probab=97.49  E-value=0.013  Score=53.47  Aligned_cols=23  Identities=9%  Similarity=0.082  Sum_probs=19.3

Q ss_pred             cccEEEEEecCC--eEEEEeCCCCC
Q psy988          375 TGYVLVSADFNG--VIRVFLNKTKP  397 (408)
Q Consensus       375 ~~~~l~s~~~dg--~v~iw~~~~~~  397 (408)
                      +|++.+.||.||  .+-.||+.+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            688999999998  78888887765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.35  E-value=0.00088  Score=37.31  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          348 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       348 ~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      ...|..++|+|                ...+||.+..||.|.++++ +++.
T Consensus        11 ~~~v~~~~w~P----------------~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP----------------TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC----------------CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45699999999                8999999999999999999 5544

>KOG4441|consensus

Probab=97.34  E-value=0.032  Score=50.90  Aligned_cols=175  Identities=13%  Similarity=0.137  Sum_probs=97.3

Q ss_pred             eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCceeeeeecCCceeeEEEEE
Q psy988            4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~   75 (408)
                      .+..+|..+++-.....  +...-.+++..  ++.+.++||.|      .++..||...++......+........... 
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-  378 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-  378 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-
Confidence            56777877775444333  44445566666  57889999998      357788888877554333333322222222 


Q ss_pred             ecCCCEEEEEecCC-----EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEE
Q psy988           76 CENGKFAVVGSYDG-----RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLY  144 (408)
Q Consensus        76 ~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~  144 (408)
                       -+|...++|+.||     ++..||..+.+.........      .......+.+  ++...++|+.+      .++..|
T Consensus       379 -l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~------~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~Y  449 (571)
T KOG4441|consen  379 -LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT------RRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECY  449 (571)
T ss_pred             -ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc------ceeeeEEEEE--CCEEEEEcCcCCCccccceEEEE
Confidence             2788888999886     46677777665432221111      0011222222  46666777644      357888


Q ss_pred             EccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeecc
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHH  192 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  192 (408)
                      |..+++-...-......... . .-.-++...+.|+.|+     .+..||..+
T Consensus       450 DP~t~~W~~~~~M~~~R~~~-g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  450 DPETNTWTLIAPMNTRRSGF-G-VAVLNGKIYVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             cCCCCceeecCCcccccccc-e-EEEECCEEEEECCccCCCccceEEEEcCCC
Confidence            88876643322221111111 1 2233677778888776     256666654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.30  E-value=0.09  Score=44.93  Aligned_cols=145  Identities=14%  Similarity=0.190  Sum_probs=71.9

Q ss_pred             eEEEEeccCCeeEeEEEe----CCceEEEEEcCCCCCEEEEEeC--------------------CCcEEEEecCCCCcee
Q psy988            4 TVRLWHISRKECLCCFQH----IDFVTAICFHPRDDRYFLSGSL--------------------DGKLRLWNIPDKKVAV   59 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h----~~~v~~~~~sp~~~~~l~t~~~--------------------dg~i~iw~~~~~~~~~   59 (408)
                      -+.+.|-++.+.......    ..--+.+-|.| ..+.++|...                    -.++.+||+.+.+.+.
T Consensus       158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q  236 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ  236 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred             cEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence            455666666666665542    22345677888 7888887642                    2579999999998875


Q ss_pred             eeeecCCceeeEEEEEecC--CCE-EEEEecCCEEEEEec-cCCeeeEEEEEeecc----cc---------ccCCCCeEE
Q psy988           60 WNEVEGQTKLITAANFCEN--GKF-AVVGSYDGRCIFYTT-DQLKYHTQIHVRSTR----GK---------NATGRKISG  122 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~--~~~-l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~----~~---------~~~~~~v~~  122 (408)
                      ...+.........+.|..+  ..+ ++.+....+|..|-- +.++...........    ..         .....-|+.
T Consensus       237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            5555554556778888654  443 333334445554433 444332222111110    00         111346899


Q ss_pred             EeeCCCCCeEEEeeC-CCeEEEEEccCc
Q psy988          123 IEPMPGEDKILVTSN-DSRIRLYDLRDL  149 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~  149 (408)
                      |..+.|.++|.+++. .|.|+.||+...
T Consensus       317 I~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            999999999988866 899999999763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.29  E-value=0.068  Score=43.27  Aligned_cols=112  Identities=11%  Similarity=-0.056  Sum_probs=66.9

Q ss_pred             eeEEEEEecCCCEEEEEe---cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEE
Q psy988           69 LITAANFCENGKFAVVGS---YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  145 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  145 (408)
                      .+.+.+++++++.++...   ....+.++......  ....         ....+..-.|++++...++...+...+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---------~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---------TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---------cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence            688999999999887766   33455555544322  1111         113677778999976666655556666663


Q ss_pred             -ccCccccee-ecCccccccceEEEEecCCCEEEEee---cCceEEEeeec
Q psy988          146 -LRDLNLSCK-YKGYVNVSSQIKASFSHDGKYIVSGS---ENQCIYIWKTH  191 (408)
Q Consensus       146 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~  191 (408)
                       ..++..... .........|..+.++|||..++...   .++.|++--+.
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence             333332221 22111111588999999999987765   24667766553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.28  E-value=0.11  Score=45.80  Aligned_cols=117  Identities=15%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCEEEEE-eCCC----cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC----------
Q psy988           25 VTAICFHPRDDRYFLSG-SLDG----KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG----------   89 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------   89 (408)
                      +....+|| +++++|.+ +..|    .++++|+++++... ..+..  .....+.|.++++.|+....+.          
T Consensus       126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC-Ccccc--cccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            34678999 88888755 3334    49999999996553 22221  1223499999988877665433          


Q ss_pred             -EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---C-CeEEEEEccCc
Q psy988           90 -RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---D-SRIRLYDLRDL  149 (408)
Q Consensus        90 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~  149 (408)
                       .|..|.+.+..............    ......+..++++++++....   + ..+.+.|+..+
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~----~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDE----PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTC----TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             cEEEEEECCCChHhCeeEEeecCC----CcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence             47788887765443222222111    112567888999999876532   3 46888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.27  E-value=0.0015  Score=36.38  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP   53 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~   53 (408)
                      ....|.+++|+| ..++||.+..+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            456799999999 99999999999999999983

>KOG2395|consensus

Probab=97.27  E-value=0.011  Score=50.99  Aligned_cols=145  Identities=20%  Similarity=0.250  Sum_probs=90.7

Q ss_pred             EEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE-------EEEEecCCEEEEEeccCCeeeEEEEEeec
Q psy988           38 FLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF-------AVVGSYDGRCIFYTTDQLKYHTQIHVRST  110 (408)
Q Consensus        38 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  110 (408)
                      |.++.....++-.|++.|+++  .....+.. |.-+.+.|+.+.       -+.|-.+..|.-||.+-.... .+.....
T Consensus       349 l~~~~~~~~l~klDIE~GKIV--eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~  424 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIV--EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS  424 (644)
T ss_pred             eeCCCCcCcceeeecccceee--eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec
Confidence            344555567888888999877  45665555 777778776432       345667888999998733221 1111110


Q ss_pred             cccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeee
Q psy988          111 RGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                       ..........|.+-.. ..++++|+.+|.|++||--..+....+++..  ..|..+..+.+|++|++.+. ..+.+.++
T Consensus       425 -kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  425 -KQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             -cccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence             0111223456666554 4589999999999999973333333344443  34778899999999887765 45666665


Q ss_pred             c
Q psy988          191 H  191 (408)
Q Consensus       191 ~  191 (408)
                      .
T Consensus       500 ~  500 (644)
T KOG2395|consen  500 L  500 (644)
T ss_pred             e
Confidence            3

>KOG2079|consensus

Probab=97.26  E-value=0.00065  Score=63.00  Aligned_cols=105  Identities=19%  Similarity=0.288  Sum_probs=74.6

Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      .+..++.|+..|.+-..|+... +-....+.....+|++++|+.+|+.++.|-.+|.|.+||+..+            +.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------------k~  164 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------------KI  164 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC------------cc
Confidence            3456788899999999987743 2222333444568999999999999999999999999999986            56


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      ++.+..|..+.+++-+.-..             .++..+.++..-|.  +|.+
T Consensus       165 l~~i~e~~ap~t~vi~v~~t-------------~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  165 LKVITEHGAPVTGVIFVGRT-------------SQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeeecCCccceEEEEEEe-------------CCCcEEEEccCCCc--eEEE
Confidence            66777666665555443210             04557778877776  5654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.24  E-value=0.07  Score=42.53  Aligned_cols=167  Identities=11%  Similarity=0.024  Sum_probs=97.7

Q ss_pred             eEEEEeccCCeeEeEEEeCCce--EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            4 TVRLWHISRKECLCCFQHIDFV--TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v--~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      .|+.+|+.+++.+....-....  -.++..  ++++..-.-.++...+||..+-+........+   .=..++  .+++.
T Consensus        69 ~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~---EGWGLt--~dg~~  141 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG---EGWGLT--SDGKR  141 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-SS---S--EEE--ECSSC
T ss_pred             EEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecCC---cceEEE--cCCCE
Confidence            6889999999888776633332  234444  34444455568999999998866553333333   233444  57888


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc---
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY---  158 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  158 (408)
                      |+.......+.++|..+.+....+.+......   -..++.+.+- +|...+=.-....|...|..+|+....+...   
T Consensus       142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p---v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~  217 (264)
T PF05096_consen  142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP---VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLR  217 (264)
T ss_dssp             EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHH
T ss_pred             EEEECCccceEEECCcccceEEEEEEEECCEE---CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhh
Confidence            88887788999999998887776655432221   2356677776 3443333444567888888888876543210   


Q ss_pred             ----------cccccceEEEEecCCCEEEEeec
Q psy988          159 ----------VNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       159 ----------~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                                ....-...+++.|..+.|+..+.
T Consensus       218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             HHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             hcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence                      11223557999998777666553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.091  Score=43.63  Aligned_cols=95  Identities=16%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             ceeeeeccCCCCCeEEEe-cCCCeEEEEEcCC--Cee---eeEEeeccceeceeEEEEcCCCCEEEEecCCc-eEEEeec
Q psy988          251 RKISGIEPMPGEDKILVT-SNDSRIRLYDLRD--LNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-CIYIWKT  323 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~  323 (408)
                      ...+.++||||++.++.+ +..+.|.-|++..  +..   ...+.........-.++...+|.+.+++-.+| .|.+|+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            345678888888877776 4458888887762  111   11111111222344678888888886555554 8999998


Q ss_pred             cccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      + +            +++..+.-....+++++|--
T Consensus       243 d-G------------~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         243 D-G------------KLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             C-C------------cEEEEEECCCCCCccceEeC
Confidence            8 4            45666665557788888853

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.20  E-value=0.085  Score=42.72  Aligned_cols=104  Identities=12%  Similarity=-0.066  Sum_probs=57.7

Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEE-cCCCeeee-EEeeccceeceeEEEEcCCCCEEEEec---CCceEEEeecccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYD-LRDLNLSC-KYKGYVNVSSQIKASFSHDGKYIVSGS---ENQCIYIWKTHHD  326 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~  326 (408)
                      .+....|++++...+....+...+++. ..+++... ..........|..+.+||||..+|...   .++.|.+--+...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            344556666766666666666666663 33333222 222211111789999999999888654   3577887766543


Q ss_pred             CccccccccCccccceeeeeeccceEEEEecC
Q psy988          327 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      ...   .+......+.........+.+++|.+
T Consensus       147 ~~g---~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  147 GDG---VPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCC---CcceeccceEecccccCcceeeeecC
Confidence            211   00001112222223356789999999

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079|consensus

Probab=97.17  E-value=0.0027  Score=59.17  Aligned_cols=104  Identities=9%  Similarity=0.118  Sum_probs=76.1

Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      .+..++.|+..|.+...|+.+.-       ..........++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL-------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL-------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc-------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            45678889999999988887641       11111223356999999999999999999999999999999888877765


Q ss_pred             cccc-ccceEEEEecCCCEEEEeecCceEEEeee
Q psy988          158 YVNV-SSQIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       158 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      +..+ ..+..+.+..++..++++...|.  +|.+
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4433 23445566667777888877775  5654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.11  E-value=0.18  Score=44.70  Aligned_cols=158  Identities=11%  Similarity=0.092  Sum_probs=88.8

Q ss_pred             CceEEEEEcCCCCCEEEEEe--CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC----CCEEEEEecCCEEEEEec
Q psy988           23 DFVTAICFHPRDDRYFLSGS--LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN----GKFAVVGSYDGRCIFYTT   96 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~   96 (408)
                      .+|..++|.. +.+.++|.-  .+|++++=|         ....+.-..|..+.|.|-    ...|++......|.+|.+
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            5688899984 444455542  234433322         122334456899999985    335666678889999987


Q ss_pred             cCCe--eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988           97 DQLK--YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus        97 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      ....  .......+.........---.++.|+|....|++-+....-.+++++.........- .....|.|.+|.+||+
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ  168 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCC
Confidence            6211  111111111100011111245688999988887766544445566654332222111 2234588999999999


Q ss_pred             EEEEeec-CceEEEeeec
Q psy988          175 YIVSGSE-NQCIYIWKTH  191 (408)
Q Consensus       175 ~l~~~~~-dg~i~i~d~~  191 (408)
                      +|+++-. .=.-++||-.
T Consensus       169 RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEEeCCeEEEEEecCc
Confidence            9876633 3356888854

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.03  E-value=0.19  Score=43.50  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             CceEEEEEcCCCCCEEEEEe-----------CCC-cEEEEecCC--CCceeeeeecCCceeeEEEEEecCCCEEEEEecC
Q psy988           23 DFVTAICFHPRDDRYFLSGS-----------LDG-KLRLWNIPD--KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD   88 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~-----------~dg-~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   88 (408)
                      .....|+|.+ +|+++++-.           ..+ .|.+++-.+  ++......+.........+++.++|  |++++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            4567899999 888776642           223 677776543  3332223333334456889999888  4444444


Q ss_pred             CEEEEEeccCCee---eEEEEEeecccc-ccCCCCeEEEeeCCCCCeEEEeeCC-------------------CeEEEEE
Q psy988           89 GRCIFYTTDQLKY---HTQIHVRSTRGK-NATGRKISGIEPMPGEDKILVTSND-------------------SRIRLYD  145 (408)
Q Consensus        89 g~i~iw~~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~i~d  145 (408)
                      ...++.+.+....   ............ ..+......+.|.|+|...++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            3333445432211   011111111111 1122357789999998766654421                   4455566


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ..+++....-.+.   .....++|+++|+.+++-.
T Consensus       171 pdg~~~e~~a~G~---rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       171 PDGGKLRVVAHGF---QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCeEEEEecCc---CCCccceECCCCCEEEEcc
Confidence            6554432222222   2345689999988766543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.15  Score=40.99  Aligned_cols=138  Identities=10%  Similarity=0.075  Sum_probs=88.1

Q ss_pred             EEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC
Q psy988           47 LRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM  126 (408)
Q Consensus        47 i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  126 (408)
                      ..+|..+-......+.+.+-...+.++.|+|+.+.|++......-.++=...++....+.+....       ....+.+.
T Consensus        65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyi  137 (316)
T COG3204          65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYI  137 (316)
T ss_pred             hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEe
Confidence            55555443322222334555666999999999999999888887777776777766665544322       34456676


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCccccee-------ecCccc-cccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          127 PGEDKILVTSNDSRIRLYDLRDLNLSCK-------YKGYVN-VSSQIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       127 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                      .++.+.++--.++.+.++.+........       +..... ....-.++|+|.+..|+.+-+..-+.||...
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            6666666656688888887765422111       111111 1224468999999888888877777777764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.93  E-value=0.067  Score=48.57  Aligned_cols=115  Identities=10%  Similarity=0.147  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe--cCCCEEEEEecCCEEEEEeccCC--
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC--ENGKFAVVGSYDGRCIFYTTDQL--   99 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~--   99 (408)
                      ...-+.-|. -++..++-+...++.|||...+.......+ ...+.|..+.|.  |+|+.+++.+....|.++.-...  
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344444554 454444444446799999998876543444 456789999995  68999999999999999864211  


Q ss_pred             -------eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988          100 -------KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus       100 -------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                             .....+...   ...  ..+|.+..|.++|..++.++  +.+.|+|-.
T Consensus       109 ~~~~p~w~~i~~i~i~---~~T--~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDIS---SHT--PHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEee---cCC--CCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence                   111222221   122  24788999999886555544  478888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395|consensus

Probab=96.89  E-value=0.04  Score=47.69  Aligned_cols=133  Identities=18%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCC-------EEEEEeCCCcEEEEecCCCCceeeeeecCC----ceeeEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDR-------YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ----TKLITA   72 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~-------~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~v~~   72 (408)
                      .++=.|++.|+.+........|.-+.+.| +.+       --+.|-.|..|.-||.+-.....+...++|    .....|
T Consensus       357 ~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc  435 (644)
T KOG2395|consen  357 KLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC  435 (644)
T ss_pred             cceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence            35567889999999999555588888888 432       123455678899999864332111222232    233455


Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      .+-..+| ++++|+.+|.|++||--....        .....+.+.+|..+..+.+|+.++..+. ..+.+.++.
T Consensus       436 ~aTT~sG-~IvvgS~~GdIRLYdri~~~A--------KTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~  500 (644)
T KOG2395|consen  436 FATTESG-YIVVGSLKGDIRLYDRIGRRA--------KTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL  500 (644)
T ss_pred             eeecCCc-eEEEeecCCcEEeehhhhhhh--------hhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence            5554454 799999999999999732221        1122345578999999999998877664 577777764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.86  E-value=0.21  Score=41.33  Aligned_cols=118  Identities=15%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      .+.......+..+..+++|++++++.......-||--...-...-..  ....+.++.|+|++.+.+.+ ..|.|++=+.
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            34455567788899999999999987777667777432111111111  23478899999998887755 7888888773


Q ss_pred             cccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeE
Q psy988          324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVI  388 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  388 (408)
                      ......+.       +.+..+..-.-.+..++|.+                ++...|+|+ .|.+
T Consensus       215 ~~~~~~w~-------~~~~~~~~~~~~~ld~a~~~----------------~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  215 PDDGETWS-------EPIIPIKTNGYGILDLAYRP----------------PNEIWAVGG-SGTL  255 (302)
T ss_dssp             TTEEEEE----------B-TTSS--S-EEEEEESS----------------SS-EEEEES-TT-E
T ss_pred             CCCccccc-------cccCCcccCceeeEEEEecC----------------CCCEEEEeC-CccE
Confidence            22211111       11111112233478999998                777777666 4443

>KOG4499|consensus

Probab=96.79  E-value=0.16  Score=39.20  Aligned_cols=222  Identities=10%  Similarity=0.014  Sum_probs=111.7

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC---CEEEEEecCCEEEEEeccCCeeeEEEEEeec
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG---KFAVVGSYDGRCIFYTTDQLKYHTQIHVRST  110 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  110 (408)
                      .+.++..--..|.|.-||....+... ..+.+..  ..++.+--.+   .+.+.++..-.|.-||-..............
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~r-a~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev  102 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYR-AKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEV  102 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEE-EEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeecccc
Confidence            34455555556788889988765542 2333322  3333332222   2233333333344466332221111111111


Q ss_pred             cccccCCCCeEEEeeCCCCCeEEEeeC----------CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe-
Q psy988          111 RGKNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-  179 (408)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  179 (408)
                      .... ...+.+.-..+|+|++ +.|..          .|.++.|-+.. + +..+......  ...++|+.+.+.+... 
T Consensus       103 ~~d~-kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~I--sNgl~Wd~d~K~fY~iD  176 (310)
T KOG4499|consen  103 QPDR-KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGI--SNGLAWDSDAKKFYYID  176 (310)
T ss_pred             CchH-HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCC-C-ceeeehhccC--CccccccccCcEEEEEc
Confidence            1111 1346677788999988 44422          24455554431 1 1111111111  2357888887776654 


Q ss_pred             ecCceEEEee--eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          180 SENQCIYIWK--THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       180 ~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +.+-.|.-||  ..++...                 ....+..+.-+.                     .......-.++
T Consensus       177 sln~~V~a~dyd~~tG~~s-----------------nr~~i~dlrk~~---------------------~~e~~~PDGm~  218 (310)
T KOG4499|consen  177 SLNYEVDAYDYDCPTGDLS-----------------NRKVIFDLRKSQ---------------------PFESLEPDGMT  218 (310)
T ss_pred             cCceEEeeeecCCCccccc-----------------CcceeEEeccCC---------------------CcCCCCCCcce
Confidence            4456776677  4333211                 001111111000                     00111122334


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~  304 (408)
                      +..+|.+.++.-..++|...|..+|+.+.++.-...  .++++||--
T Consensus       219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~--qitsccFgG  263 (310)
T KOG4499|consen  219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP--QITSCCFGG  263 (310)
T ss_pred             EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC--ceEEEEecC
Confidence            455778888888889999999999999999887655  788999954

>KOG4499|consensus

Probab=96.72  E-value=0.19  Score=38.91  Aligned_cols=137  Identities=12%  Similarity=0.053  Sum_probs=76.9

Q ss_pred             eeeEEEEEecCCCEEEEEecC---------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eC
Q psy988           68 KLITAANFCENGKFAVVGSYD---------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SN  137 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  137 (408)
                      ...+.-..+|+|++++-.-.|         |.++.|-....-....          ..-.--+.++|+.+.+.+... +.
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~----------~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW----------NCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee----------hhccCCccccccccCcEEEEEccC
Confidence            445566678999984422222         4455554332111100          111234568888887777666 55


Q ss_pred             CCeEEEEE--ccCcccc-----eeecCc--cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccc
Q psy988          138 DSRIRLYD--LRDLNLS-----CKYKGY--VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW  208 (408)
Q Consensus       138 dg~i~i~d--~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (408)
                      +-+|.-||  ..++...     ..++..  ......-.++...+|+..++.-..++|..+|..+++..            
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L------------  246 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL------------  246 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE------------
Confidence            66787777  5554432     112111  01111223566678888888888889999998776443            


Q ss_pred             cccccccceEEEEEEeCC
Q psy988          209 EGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       209 ~~~~~~~~~v~~~~~~~~  226 (408)
                      ..+.-....+++.+|-..
T Consensus       247 ~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  247 LEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEEcCCCceEEEEecCC
Confidence            344445667888887644

>PHA03098 kelch-like protein; Provisional

Probab=96.66  E-value=0.12  Score=47.46  Aligned_cols=176  Identities=9%  Similarity=0.011  Sum_probs=84.2

Q ss_pred             eEEEEeccCCeeEeEEE-e-CCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            4 TVRLWHISRKECLCCFQ-H-IDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h-~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      .+..||..+.+-...-. . ...-.+++. - ++.+++.||.+     ..+..||..+++......+....... +++ .
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~  387 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-N  387 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-E
Confidence            45667766655433221 1 111112222 2 67778888765     35778888776654322222111111 111 2


Q ss_pred             cCCCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--------CeEE
Q psy988           77 ENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--------SRIR  142 (408)
Q Consensus        77 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~  142 (408)
                      -+++..+.|+.+      ..+..||..+.+......   .....   .. .++.. .++..++.|+.+        ..+.
T Consensus       388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r---~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~  459 (534)
T PHA03098        388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISH---YG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVE  459 (534)
T ss_pred             ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccc---cC-ceEEE-ECCEEEEECCccCCCCCcccceEE
Confidence            356666777632      467888888765432211   11000   01 11222 245556666542        2388


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  193 (408)
                      +||..+++-...-......... ++ ...+++.++.|+.+     ..+.+||..+.
T Consensus       460 ~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        460 SYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            8998876543221111111111 12 22367777777654     36777877643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.65  E-value=0.25  Score=39.49  Aligned_cols=167  Identities=14%  Similarity=0.131  Sum_probs=95.6

Q ss_pred             eeEeEEEeCCc--eEEEEEcCCCCCEEEEEeCCC--cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC
Q psy988           14 ECLCCFQHIDF--VTAICFHPRDDRYFLSGSLDG--KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG   89 (408)
Q Consensus        14 ~~~~~~~h~~~--v~~~~~sp~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   89 (408)
                      +.+..+.|...  ...+.|.. ++.++-+.+.-|  .|+.+|+.+++......+... ---..+... +++...-.-.++
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~-~d~l~qLTWk~~  110 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITIL-GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEE-TTEEEEEESSSS
T ss_pred             EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEE-CCEEEEEEecCC
Confidence            34555556544  46688866 788888887766  699999999987754555432 112223333 233333445678


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc---cceE
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS---SQIK  166 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~  166 (408)
                      ...+||..+.+....+...         +.=..++  .+++.|+.+.....|+++|..+.+....+.-.....   .+..
T Consensus       111 ~~f~yd~~tl~~~~~~~y~---------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE  179 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFPYP---------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE  179 (264)
T ss_dssp             EEEEEETTTTEEEEEEE-S---------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred             eEEEEccccceEEEEEecC---------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence            9999999998877665432         1334444  467788888777899999998877666554332222   2334


Q ss_pred             EEEecCCCEEEEeecCceEEEeeecccee
Q psy988          167 ASFSHDGKYIVSGSENQCIYIWKTHHDYA  195 (408)
Q Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  195 (408)
                      +.+- +|...|=.-....|...|..++..
T Consensus       180 LE~i-~G~IyANVW~td~I~~Idp~tG~V  207 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQTDRIVRIDPETGKV  207 (264)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred             EEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence            4554 454444333444566666665543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.63  E-value=0.06  Score=47.42  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=75.2

Q ss_pred             eCCceEEEEEcCC---CCCEEEEEeCCCcEEEEecCC-----CCceeeeeecC---CceeeEEEEEecCCCEEEEEecCC
Q psy988           21 HIDFVTAICFHPR---DDRYFLSGSLDGKLRLWNIPD-----KKVAVWNEVEG---QTKLITAANFCENGKFAVVGSYDG   89 (408)
Q Consensus        21 h~~~v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg   89 (408)
                      .-+.|..+.|.|-   +-..|++......|.+|.+..     .+....+...-   ..---..+.|+|....|++-....
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            3355899999983   232445555678999999863     22221111110   011124567999998888877666


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccC
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRD  148 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  148 (408)
                      .-.++++..........+       ...+.|.|.+|.+||++|+++ +..=.-++||-..
T Consensus       135 vSV~~sV~~d~srVkaDi-------~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADI-------KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eeEeeeeeeCCceEEEec-------cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            656666665443333322       224689999999999999887 4444678888654

>KOG2444|consensus

Probab=96.56  E-value=0.012  Score=44.97  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=42.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceee-EEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      .+..++.|+.+|.|.+|+........ .....-...| +.+.--.++.+..+++.+|.|+.|++.-.+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~-d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHS-DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHH-HhhhcccccceeccccccccceeEEeccCCceeeeccccCce
Confidence            34568889999999999986322211 1111112222 2222234566889999999999999876553

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.55  E-value=0.013  Score=31.57  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=27.3

Q ss_pred             CceEEEEEcCCCC--CEEEEEeCCCcEEEEecCC
Q psy988           23 DFVTAICFHPRDD--RYFLSGSLDGKLRLWNIPD   54 (408)
Q Consensus        23 ~~v~~~~~sp~~~--~~l~t~~~dg~i~iw~~~~   54 (408)
                      +.|.++.|+|..+  ++|+.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998555  6888888889999999985

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=96.35  E-value=0.37  Score=44.30  Aligned_cols=147  Identities=11%  Similarity=0.076  Sum_probs=71.2

Q ss_pred             CCCEEEEEeCCC------cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCeee
Q psy988           34 DDRYFLSGSLDG------KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLKYH  102 (408)
Q Consensus        34 ~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~  102 (408)
                      ++.+++.||.++      .+..||..+.+......+.........+  .-++...+.|+.+     ..+..||..+....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            566777776542      5778888777654322222122222222  2367777777765     35677887766543


Q ss_pred             EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEEccCcccceeecCccccccceEEEEecCCCEE
Q psy988          103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      ......   ...   ... +++. -++...+.|+.+      ..+..||+.+.+-...-........  ..+...+++.+
T Consensus       372 ~~~~lp---~~r---~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~iy  441 (534)
T PHA03098        372 EEPPLI---FPR---YNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIYHDGKIY  441 (534)
T ss_pred             eCCCcC---cCC---ccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEEECCEEE
Confidence            211111   100   111 1122 245666666631      4588899877553322111111111  12233356666


Q ss_pred             EEeecCc--------eEEEeeecc
Q psy988          177 VSGSENQ--------CIYIWKTHH  192 (408)
Q Consensus       177 ~~~~~dg--------~i~i~d~~~  192 (408)
                      +.|+.++        .+.+||..+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCC
Confidence            6665431        266666654

>KOG3630|consensus

Probab=96.20  E-value=0.097  Score=49.86  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceee
Q psy988          265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  344 (408)
Q Consensus       265 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  344 (408)
                      .++...|+.|++..+........-  ..-....++++|+|.|+.++.|-..|++.-|...-....  .+..+   .  ..
T Consensus       171 ~av~l~dlsl~V~~~~~~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~--~ip~P---p--~~  241 (1405)
T KOG3630|consen  171 SAVDLSDLSLRVKSTKQLAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS--EIPEP---P--VE  241 (1405)
T ss_pred             hhhhccccchhhhhhhhhhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeecccceee--cccCC---C--cC
Confidence            455677888888776533222111  112336789999999999999999999998876532100  00000   0  01


Q ss_pred             eeeccceEEEEecC
Q psy988          345 KAHNAVVTCAVFAP  358 (408)
Q Consensus       345 ~~h~~~v~~~~~~~  358 (408)
                        ....|.++.|-.
T Consensus       242 --e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  242 --ENYRVLSVTWLS  253 (1405)
T ss_pred             --CCcceeEEEEec
Confidence              146789999976

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.12  E-value=0.38  Score=41.89  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=43.5

Q ss_pred             CCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          262 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       262 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      ..++++++..|.|++||.-..+....+++...  .|..+..+.+|+++++.+. ..+.+-|+.-
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence            46799999999999999654333333444333  6777888999999887654 4777777654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.12  E-value=0.6  Score=43.23  Aligned_cols=113  Identities=16%  Similarity=0.200  Sum_probs=72.9

Q ss_pred             CCCCeEEEecCCCeEEEEEcCC-------C----ee-------eeEEeeccceeceeEEEEc--CCCCEEEEecCCceEE
Q psy988          260 PGEDKILVTSNDSRIRLYDLRD-------L----NL-------SCKYKGYVNVSSQIKASFS--HDGKYIVSGSENQCIY  319 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~-------~----~~-------~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~  319 (408)
                      -+...|+.+..||.|.+|.+++       .    +.       ...+... -...+..++++  ...++||+++....|.
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence            3567788899999999997632       1    00       0011111 12367788888  7888999999989999


Q ss_pred             EeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEecCCeEEEEeC
Q psy988          320 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSADFNGVIRVFLN  393 (408)
Q Consensus       320 iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iw~~  393 (408)
                      ||-+.....+....         .-..|...|-+++|-++..           .+.|. .|++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~---------~s~~~~hNIP~VSFl~~~~-----------d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHV---------PSHQHSHNIPNVSFLDDDL-----------DPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccc---------cccccccCCCeeEeecCCC-----------CCccceEEEEEeccCcEEEEEE
Confidence            88876532221110         0112666799999988422           00232 7888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.03  E-value=0.39  Score=45.10  Aligned_cols=89  Identities=9%  Similarity=0.096  Sum_probs=54.1

Q ss_pred             eceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccc--cCccccce-------eeeeeccceEEEEecCCchhhhh
Q psy988          295 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR--RDRNDFWE-------GIKAHNAVVTCAVFAPCPELIIA  365 (408)
Q Consensus       295 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~~  365 (408)
                      ..|..+.++|+|++||..+..| |.|-.+...-.......  +....+..       ....+...|..+.|+|.+.    
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~----  159 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE----  159 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC----
Confidence            4677899999999999888765 44444432100000000  00000000       0113446789999999422    


Q ss_pred             ccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          366 QMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       366 ~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                               ++..|+.-..|+++|+||+...+
T Consensus       160 ---------~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  160 ---------SDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             ---------CCCeEEEEecCCEEEEEecCCCC
Confidence                     56788888889999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=96.03  E-value=0.68  Score=41.76  Aligned_cols=144  Identities=8%  Similarity=0.008  Sum_probs=69.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC--CEEEEEeccCCeeeEEEE
Q psy988           34 DDRYFLSGSLDG-----KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD--GRCIFYTTDQLKYHTQIH  106 (408)
Q Consensus        34 ~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~  106 (408)
                      ++.+++.||.++     .+..||..++.......+.........+  .-++...+.|+.+  ..+..||..+.....   
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~---  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVN---  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEE---
Confidence            566777787643     4677888776554333332222122222  2467777777754  357777766544321   


Q ss_pred             EeeccccccCCCCeEEEeeCCCCCeEEEeeCC---CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988          107 VRSTRGKNATGRKISGIEPMPGEDKILVTSND---SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  183 (408)
                      ........   .....+..  ++...+.|+.+   ..+..||.++.+-...-........  ..+..-+++..+.|   |
T Consensus       346 ~~~l~~~r---~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G  415 (480)
T PHA02790        346 MPSLLKPR---CNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVG---R  415 (480)
T ss_pred             CCCCCCCC---cccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEEC---C
Confidence            11111110   11112222  46666666654   3477888876543321111111111  12223456655666   3


Q ss_pred             eEEEeeecc
Q psy988          184 CIYIWKTHH  192 (408)
Q Consensus       184 ~i~i~d~~~  192 (408)
                      .+.+||.++
T Consensus       416 ~~e~ydp~~  424 (480)
T PHA02790        416 NAEFYCESS  424 (480)
T ss_pred             ceEEecCCC
Confidence            466777654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.95  E-value=0.87  Score=38.63  Aligned_cols=114  Identities=14%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCc------EEEEecCCC-----Ccee--eeeecCCce--------eeEEEEEecCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGK------LRLWNIPDK-----KVAV--WNEVEGQTK--------LITAANFCENG   79 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~------i~iw~~~~~-----~~~~--~~~~~~~~~--------~v~~~~~~~~~   79 (408)
                      .-+.+..+.+.| ++..+++.+.+|.      +...++...     ....  ...+....+        ...+|++.++|
T Consensus        18 ~~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             ccCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            346788999997 5556777777787      666665431     1110  011111111        34478887888


Q ss_pred             CEEEEEecC------CEEEEEeccCCeeeEEEEEeecc-------ccccCCCCeEEEeeCCCCCeEEEee
Q psy988           80 KFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTR-------GKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        80 ~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                      .++++.-.+      ..|..++.+ +.....+......       .........-+++++|+++.|+++.
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            888877667      788888876 4444433222211       2223456789999999999777763

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.89  E-value=0.76  Score=37.44  Aligned_cols=229  Identities=9%  Similarity=0.072  Sum_probs=115.8

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCC-----eeeEEEEEeeccccccCCCCeEEEeeCCCCC------------
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQL-----KYHTQIHVRSTRGKNATGRKISGIEPMPGED------------  130 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------  130 (408)
                      ..-..|+++|.+.+-++....+...+||....     .......+..... .......+.+.|+....            
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-LAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-CCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            34578999999988888888899999998711     1111111111111 11223567777764322            


Q ss_pred             eEEEeeCCCeEEEEEccCccc-----ceeecCccccccceEEEEec--CCCEEEEee-cCceEEEeeeccceeeeeeccc
Q psy988          131 KILVTSNDSRIRLYDLRDLNL-----SCKYKGYVNVSSQIKASFSH--DGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRR  202 (408)
Q Consensus       131 ~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  202 (408)
                      .++.+++||+|.-|...-...     ...+........-..+++..  .+.+|+.+. ..++|.+||-.-......    
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~----  177 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP----  177 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC----
Confidence            367788999999998532221     11121111111112344433  355666554 467888887542111000    


Q ss_pred             CCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC
Q psy988          203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  282 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  282 (408)
                        .    .+.   .+-.-.-+.|-+-..+                ...-.|+-..-.++.+.=+.+..-|.|-+||+. +
T Consensus       178 --g----~F~---DP~iPagyAPFnIqni----------------g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G  231 (336)
T TIGR03118       178 --G----SFI---DPALPAGYAPFNVQNL----------------GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-G  231 (336)
T ss_pred             --C----Ccc---CCCCCCCCCCcceEEE----------------CCeEEEEEEecCCcccccccCCCcceEEEEcCC-C
Confidence              0    000   0000001111100000                000011111112222223445666899999976 7


Q ss_pred             eeeeEEeeccceeceeEEEEcC------CCCEEEEecCCceEEEeeccccC
Q psy988          283 NLSCKYKGYVNVSSQIKASFSH------DGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       283 ~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      ++++++...........++..|      .|.+|+---.||+|..||..++.
T Consensus       232 ~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       232 QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence            7887775433333445566654      45666665669999999998763

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.89  E-value=0.85  Score=42.30  Aligned_cols=154  Identities=10%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceee----eee----------------cCCceeeEEEEEe--cCCCEEEEEecCCEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVW----NEV----------------EGQTKLITAANFC--ENGKFAVVGSYDGRCI   92 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~----~~~----------------~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~   92 (408)
                      .++|+.|. .+.|.||+...-...+.    ..+                ......|+.+...  -+...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666665 58999999865332110    000                0011234444443  2456789999999999


Q ss_pred             EEeccCCe----e----eEE----EEEeeccccccCCCCeEEEeeC--CCCCeEEEeeCCCeEEEEEccCcc-cceeecC
Q psy988           93 FYTTDQLK----Y----HTQ----IHVRSTRGKNATGRKISGIEPM--PGEDKILVTSNDSRIRLYDLRDLN-LSCKYKG  157 (408)
Q Consensus        93 iw~~~~~~----~----~~~----~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~  157 (408)
                      +|.++.-.    .    ...    ..... .-.........+++++  ...+.+|++++...|.||-..... .......
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P-~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKP-FFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCC-CeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            99764211    0    000    00000 0111223478889998  778888888888888887654421 1111112


Q ss_pred             ccccccceEEEEecCC---C---EEEEeecCceEEEeee
Q psy988          158 YVNVSSQIKASFSHDG---K---YIVSGSENQCIYIWKT  190 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~---~---~l~~~~~dg~i~i~d~  190 (408)
                      +.....|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            3344557788887643   2   7888889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630|consensus

Probab=95.85  E-value=0.22  Score=47.66  Aligned_cols=154  Identities=12%  Similarity=0.044  Sum_probs=90.7

Q ss_pred             eeEEEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEe---eccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEE
Q psy988           69 LITAANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVR---STRGKNATGRKISGIEPMPGED-KILVTSNDSRIR  142 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  142 (408)
                      ++..+...+|+...++..  .+-.|..||+++..........   .............++.|+|.-. ..++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455555567766544433  3347889998865433211111   1111122234567788888543 455667789998


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      +..+........  ...-....++++|+|.|+.+++|-..|++.-|...-.... ...+.+        ......|.++.
T Consensus       182 V~~~~~~~~~v~--s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp--------~~e~yrvl~v~  250 (1405)
T KOG3630|consen  182 VKSTKQLAQNVT--SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPP--------VEENYRVLSVT  250 (1405)
T ss_pred             hhhhhhhhhhhc--ccCcccceeeEEeccccceeeEecCCCeEEEeecccceee-cccCCC--------cCCCcceeEEE
Confidence            887654322211  1122244778999999999999999999998875432111 111100        01156788999


Q ss_pred             EeCCcceeeee
Q psy988          223 FAPCPELIIAQ  233 (408)
Q Consensus       223 ~~~~~~~~~~~  233 (408)
                      |-....++++.
T Consensus       251 Wl~t~eflvvy  261 (1405)
T KOG3630|consen  251 WLSTQEFLVVY  261 (1405)
T ss_pred             EecceeEEEEe
Confidence            98888877764

>KOG2280|consensus

Probab=95.80  E-value=1.6  Score=40.31  Aligned_cols=40  Identities=10%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      ..+..+.+||+.++|+.-...|.|.+-+.+..+....+..
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            4556677888888888889999999999887777777663

>PRK13684 Ycf48-like protein; Provisional

Probab=95.76  E-value=1.1  Score=38.21  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEE-EecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRL-WNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~i-w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .+.+.++.+.| ++.+++++. .|.+.. ++-......  .....-...+.++.+.++++.++++ ..|.+++=..+.+.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~--~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWT--PHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEE--EeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            35688899999 777665554 465543 221111122  1222345678999999998876665 56766543333332


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC-ccccccceEEEEecCCCEEEEe
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      .-.......    ......+..+.+.+++. +++++.+|.+.. ....++.-..... .........+.|..+++.++ .
T Consensus       247 sW~~~~~~~----~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~  319 (334)
T PRK13684        247 SWSKPIIPE----ITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L  319 (334)
T ss_pred             ccccccCCc----cccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence            211111100    00113577888988765 455556676553 4444443322221 11112355666666666555 4


Q ss_pred             ecCceEEEeee
Q psy988          180 SENQCIYIWKT  190 (408)
Q Consensus       180 ~~dg~i~i~d~  190 (408)
                      +..|.|.-|+-
T Consensus       320 G~~G~il~~~~  330 (334)
T PRK13684        320 GQRGVLLRYVG  330 (334)
T ss_pred             CCCceEEEecC
Confidence            56788877753

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.72  E-value=0.35  Score=44.19  Aligned_cols=67  Identities=15%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             EeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEE--ecCCCEEEEeecCceEEEeee
Q psy988          123 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--SHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      +.-+.-++..++-+....+.|||.+.+.......- .....|..+.|  .|+++.+++.+....|.+|.-
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            33344344444445556899999998774433221 22334666666  568899998889999999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.70  E-value=1.3  Score=38.68  Aligned_cols=137  Identities=14%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             CCceEEEEeccCCe-----eEeEEEeCCceEEEEEcC---C-CCCEEEEEeCCCcEEEEecCCC-------Cceeeeeec
Q psy988            1 MDKTVRLWHISRKE-----CLCCFQHIDFVTAICFHP---R-DDRYFLSGSLDGKLRLWNIPDK-------KVAVWNEVE   64 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~-----~~~~~~h~~~v~~~~~sp---~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~   64 (408)
                      +.|.++||+.....     .+.+.+-+.+|..++.-+   . +...||. -.-..+.||.+...       .........
T Consensus        45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~y  123 (418)
T PF14727_consen   45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIY  123 (418)
T ss_pred             cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEE
Confidence            47899999986544     444455788999887542   1 2234444 45678888887321       111222333


Q ss_pred             CCce--eeEEEEEec----C-CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC
Q psy988           65 GQTK--LITAANFCE----N-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN  137 (408)
Q Consensus        65 ~~~~--~v~~~~~~~----~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  137 (408)
                      .|.-  ....+..-|    . -.++++-+.||.+.+++-+.......+..      .-   -...+.|.+..+.|++++.
T Consensus       124 eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~l---lPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  124 EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------FL---LPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------CC---CCcCeEEeecCCEEEEecC
Confidence            3322  222222222    2 36788899999999999776543222221      11   2233567788889999998


Q ss_pred             CCeEEEEEcc
Q psy988          138 DSRIRLYDLR  147 (408)
Q Consensus       138 dg~i~i~d~~  147 (408)
                      +..+.-|...
T Consensus       195 s~~l~~Yky~  204 (418)
T PF14727_consen  195 SWTLECYKYQ  204 (418)
T ss_pred             ceeEEEecHH
Confidence            8888888753

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.69  E-value=1.4  Score=38.93  Aligned_cols=62  Identities=10%  Similarity=0.058  Sum_probs=37.9

Q ss_pred             ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC
Q psy988           67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE  129 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  129 (408)
                      -.....|+|.|||++|++--..|.|++++..+........+..... .........++++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCc
Confidence            3456889999999877665446999999865543222111111110 1124578999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.62  E-value=1.1  Score=37.25  Aligned_cols=276  Identities=14%  Similarity=0.142  Sum_probs=111.6

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC---ceeeEEEEEecCCCEEEEEecCCEEEEEecc
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ---TKLITAANFCENGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~   97 (408)
                      -...+.+|.|.. ...-+++|. .+.| +-..+.++-=........   .-...++.|..+ ..++ ++..+. .+...+
T Consensus        15 t~~~l~dV~F~d-~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVD-PNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESS-SS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESS
T ss_pred             CCCceEEEEEec-CCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecC
Confidence            456899999985 555555554 4543 222233321100111111   224667777543 3344 445553 333444


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-cccceeecCccccccceEEEEecCCCEE
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      .++.-........     ..+....+....++ ....++..|.|  |.... ++.=.... ......+..+..+++|+++
T Consensus        89 gG~tW~~v~l~~~-----lpgs~~~i~~l~~~-~~~l~~~~G~i--y~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~v  159 (302)
T PF14870_consen   89 GGKTWERVPLSSK-----LPGSPFGITALGDG-SAELAGDRGAI--YRTTDGGKTWQAVV-SETSGSINDITRSSDGRYV  159 (302)
T ss_dssp             TTSS-EE----TT------SS-EEEEEEEETT-EEEEEETT--E--EEESSTTSSEEEEE--S----EEEEEE-TTS-EE
T ss_pred             CCCCcEEeecCCC-----CCCCeeEEEEcCCC-cEEEEcCCCcE--EEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEE
Confidence            4443333221110     01122333333333 33333444543  33322 22211111 1222446677788999988


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCcccccc-ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      +++..-....-||....             .+... ......+..+.|.|+                             
T Consensus       160 avs~~G~~~~s~~~G~~-------------~w~~~~r~~~~riq~~gf~~~-----------------------------  197 (302)
T PF14870_consen  160 AVSSRGNFYSSWDPGQT-------------TWQPHNRNSSRRIQSMGFSPD-----------------------------  197 (302)
T ss_dssp             EEETTSSEEEEE-TT-S-------------S-EEEE--SSS-EEEEEE-TT-----------------------------
T ss_pred             EEECcccEEEEecCCCc-------------cceEEccCccceehhceecCC-----------------------------
Confidence            88865545556664211             11111 112334555555554                             


Q ss_pred             eccCCCCCeEEEecCCCeEEEEEc-CCCeeeeE--EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDL-RDLNLSCK--YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                            +...++ ...|.|+.=+. ...+.-..  .........+..++|.+++...|+|+.. .+. ...+.+      
T Consensus       198 ------~~lw~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~DgG------  262 (302)
T PF14870_consen  198 ------GNLWML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VSTDGG------  262 (302)
T ss_dssp             ------S-EEEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EE-EESSTT------
T ss_pred             ------CCEEEE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEE-EeCCCC------
Confidence                  444343 37777777662 22222111  1111223347889999998888877644 332 233333      


Q ss_pred             cccCccccceeee---eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988          333 VRRDRNDFWEGIK---AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF  391 (408)
Q Consensus       333 ~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw  391 (408)
                            +..+..+   .-....+.+.|.+                +.+-++. +.||.|--|
T Consensus       263 ------ktW~~~~~~~~~~~n~~~i~f~~----------------~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  263 ------KTWQKDRVGENVPSNLYRIVFVN----------------PDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             ------SS-EE-GGGTTSSS---EEEEEE----------------TTEEEEE--STTEEEEE
T ss_pred             ------ccceECccccCCCCceEEEEEcC----------------CCceEEE-CCCcEEEEe
Confidence                  2222221   2234578888876                4444544 468887655

>PHA02790 Kelch-like protein; Provisional

Probab=95.54  E-value=0.83  Score=41.22  Aligned_cols=144  Identities=13%  Similarity=0.113  Sum_probs=71.2

Q ss_pred             CCCEEEEEeCC--CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC---EEEEEeccCCeeeEEEEEe
Q psy988           34 DDRYFLSGSLD--GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG---RCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        34 ~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~  108 (408)
                      ++.+.+.||.+  ..+..||..+++......+.........+  .-+|+..+.|+.++   .+..||.++........  
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--  393 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--  393 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--
Confidence            67777888764  35788887766554323332211111222  23677777777553   46678877665432111  


Q ss_pred             eccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----c
Q psy988          109 STRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----Q  183 (408)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g  183 (408)
                       .....   .....+.  -++...+.|   |.+.+||.++.+-...-......... .+ ..-+++..+.|+.+     .
T Consensus       394 -m~~~r---~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~  462 (480)
T PHA02790        394 -TYYPH---YKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYID  462 (480)
T ss_pred             -CCCcc---ccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccc
Confidence             11110   1111122  234444444   35778898776543221111111111 12 23367777777754     3


Q ss_pred             eEEEeeecc
Q psy988          184 CIYIWKTHH  192 (408)
Q Consensus       184 ~i~i~d~~~  192 (408)
                      .+..||..+
T Consensus       463 ~ve~Yd~~~  471 (480)
T PHA02790        463 TIEVYNNRT  471 (480)
T ss_pred             eEEEEECCC
Confidence            466677654

>PRK10115 protease 2; Provisional

Probab=95.51  E-value=2.3  Score=40.33  Aligned_cols=112  Identities=4%  Similarity=-0.038  Sum_probs=66.5

Q ss_pred             eeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----
Q psy988           68 KLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----  138 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  138 (408)
                      -.+..+.++|+|++|+.+...     -.|++.|+.++.......       .   ..-..++|.+|++.|+.+..+    
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------~---~~~~~~~w~~D~~~~~y~~~~~~~~  196 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------D---NVEPSFVWANDSWTFYYVRKHPVTL  196 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------c---CcceEEEEeeCCCEEEEEEecCCCC
Confidence            457778899999988876433     367788887654211100       0   111458999999888776442    


Q ss_pred             --CeEEEEEccCc--ccceeecCccccccceEEEEecCCCEEEEeec---CceEEEeee
Q psy988          139 --SRIRLYDLRDL--NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKT  190 (408)
Q Consensus       139 --g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~  190 (408)
                        ..|+.+++.++  +....+........ .....+.++++++..+.   ++.+.+++.
T Consensus       197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        197 LPYQVWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCEEEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence              36778888877  33333443222211 23334558887665543   357888885

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.51  E-value=1.1  Score=38.85  Aligned_cols=18  Identities=17%  Similarity=0.147  Sum_probs=13.3

Q ss_pred             ceeEEEEcCCCCEEEEec
Q psy988          296 SQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~  313 (408)
                      ....++|.|||++.++-+
T Consensus       125 ~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             cccCceECCCCCEEEecc
Confidence            456789999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.57  Score=35.70  Aligned_cols=110  Identities=9%  Similarity=-0.029  Sum_probs=63.6

Q ss_pred             ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-
Q psy988          268 TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-  346 (408)
Q Consensus       268 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-  346 (408)
                      .-.+|.-..||.++.+.+..+.-...   -.  ....|++-|+.++....++.-|..+-....        ....+..+ 
T Consensus       107 Tw~egvaf~~d~~t~~~lg~~~y~Ge---GW--gLt~d~~~LimsdGsatL~frdP~tfa~~~--------~v~VT~~g~  173 (262)
T COG3823         107 TWKEGVAFKYDADTLEELGRFSYEGE---GW--GLTSDDKNLIMSDGSATLQFRDPKTFAELD--------TVQVTDDGV  173 (262)
T ss_pred             EeccceeEEEChHHhhhhcccccCCc---ce--eeecCCcceEeeCCceEEEecCHHHhhhcc--------eEEEEECCe
Confidence            36778888999998888777654322   12  333466667776666677777665531110        01111111 


Q ss_pred             eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccccccC
Q psy988          347 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVSAL  407 (408)
Q Consensus       347 h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~s~~  407 (408)
                      .-..++.+.|-                 ||.+.|-.=.+..|..-+..+++..+.+.+|+|
T Consensus       174 pv~~LNELE~V-----------------dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L  217 (262)
T COG3823         174 PVSKLNELEWV-----------------DGELYANVWQTTRIARIDPDSGRVVAWIDLSGL  217 (262)
T ss_pred             ecccccceeee-----------------ccEEEEeeeeecceEEEcCCCCcEEEEEEccCC
Confidence            11234556665                 566666666666666667777777776666654

>KOG1916|consensus

Probab=95.46  E-value=0.011  Score=54.30  Aligned_cols=105  Identities=17%  Similarity=0.157  Sum_probs=71.2

Q ss_pred             CeEEEEEcC--CCeeeeEEeec---cceeceeEEEEcC---CCCEEEEecCCceEEEeeccccCccccccccCcccccee
Q psy988          272 SRIRLYDLR--DLNLSCKYKGY---VNVSSQIKASFSH---DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  343 (408)
Q Consensus       272 ~~i~i~d~~--~~~~~~~~~~~---~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  343 (408)
                      |.+.|||+.  .|+....+..+   .....+.-+.|.|   +.-++..+-.++.|++...+..             ....
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-------------~~~l  219 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-------------LRSL  219 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH-------------HHHH
Confidence            667888865  34443333221   1112333445544   6678888888999998888764             3344


Q ss_pred             eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          344 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       344 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      +++|...+..++|-..|-.++.+     .|+||..+|.+..||.+++|.+.
T Consensus       220 ~rsHs~~~~d~a~~~~g~~~l~~-----lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  220 FRSHSQRVTDMAFFAEGVLKLAS-----LSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             HHhcCCCcccHHHHhhchhhhee-----eCCCCcEEEEeecCCccceeeee
Confidence            66799888888887665555554     45599999999999999999764

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.45  E-value=1.5  Score=38.39  Aligned_cols=146  Identities=17%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             CCCEEE-EEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC--------CEEEEEecCCEEEEEeccCCe-eeE
Q psy988           34 DDRYFL-SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG--------KFAVVGSYDGRCIFYTTDQLK-YHT  103 (408)
Q Consensus        34 ~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~iw~~~~~~-~~~  103 (408)
                      +..+|. .|+....++-.|++.|+++  ....-|...  -+.|.|+.        +.|+ |-.+..|.-.|.+-.. .+.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvv--eeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVV--EEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CcceEEecCCCcccceeeecccceee--eEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence            444444 3444556777777778776  455555543  56677643        2344 4344444444443222 111


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  183 (408)
                      .........    .....+..-. ...++++++..|.|++||--..+....+.+...  .+..+..+.+|+++++.+.. 
T Consensus       553 v~esKdY~t----Kn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-  624 (776)
T COG5167         553 VVESKDYKT----KNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-  624 (776)
T ss_pred             eeeehhccc----cccccccccc-cCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-
Confidence            111111111    1122232222 356999999999999999754444444444333  36678889999998887764 


Q ss_pred             eEEEeeecc
Q psy988          184 CIYIWKTHH  192 (408)
Q Consensus       184 ~i~i~d~~~  192 (408)
                      .+.+-|+.-
T Consensus       625 yllL~d~~i  633 (776)
T COG5167         625 YLLLTDVPI  633 (776)
T ss_pred             eEEEEeccc
Confidence            677777653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.37  E-value=1.2  Score=36.89  Aligned_cols=169  Identities=10%  Similarity=0.137  Sum_probs=83.6

Q ss_pred             eEEEEeccCCeeEeEEEe-------CCceEEEEEcCCCC----CEE-EEEeCCCcEEEEecCCCCceeeeeecCC-----
Q psy988            4 TVRLWHISRKECLCCFQH-------IDFVTAICFHPRDD----RYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQ-----   66 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h-------~~~v~~~~~sp~~~----~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~-----   66 (408)
                      +|.+||+.+++.++.+.-       ...+..+.+...++    .++ ++=+..+-|.++|+.+++.-  +.+..+     
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~--Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW--RVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE--EEETCGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE--EEecCCcceec
Confidence            688999999999888861       34567777765222    233 33333468999999887643  111111     


Q ss_pred             --------------ceeeEEEEEec---CCCEEEEEecCCEEEEEeccCCeeeEEEEEeec-----cccccC-CCCeEEE
Q psy988           67 --------------TKLITAANFCE---NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST-----RGKNAT-GRKISGI  123 (408)
Q Consensus        67 --------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~-~~~v~~~  123 (408)
                                    ...+..++.+|   +++.|+-....+ -++|.+.+............     ....+. ......+
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence                          11245555544   455555444332 22332221100000000000     000000 1355678


Q ss_pred             eeCCCCCeEEEeeCCCeEEEEEccCc----ccceeecCccccccceEEEEec--CCCE
Q psy988          124 EPMPGEDKILVTSNDSRIRLYDLRDL----NLSCKYKGYVNVSSQIKASFSH--DGKY  175 (408)
Q Consensus       124 ~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~  175 (408)
                      +..++|..+++--..+.|..|+..+.    +.............+..+.+.+  +|..
T Consensus       192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred             EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence            88888888888888899999998752    1111122222234455666666  5543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.27  E-value=0.1  Score=28.17  Aligned_cols=32  Identities=25%  Similarity=0.534  Sum_probs=26.3

Q ss_pred             cceEEEEecCCchhhhhccCCCCCCCcc--cEEEEEecCCeEEEEeCCC
Q psy988          349 AVVTCAVFAPCPELIIAQMEPDKSESTG--YVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       349 ~~v~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~s~~~dg~v~iw~~~~  395 (408)
                      +.|.++.|+|.               .+  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~---------------~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPE---------------PGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCC---------------CCcccEEEEEccCCeEEEEEccc
Confidence            46889999983               33  5888888889999999994

It contains a characteristic DLL sequence motif.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=1.3  Score=35.87  Aligned_cols=162  Identities=13%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             EeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEe
Q psy988           16 LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        16 ~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~   95 (408)
                      +..+.-.+-+..+.++   +++...+..+.-++|.|+.+.........-.-.+.-.+  |.-.|++...+..|.-+.+.|
T Consensus        80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivd  154 (370)
T COG5276          80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVD  154 (370)
T ss_pred             EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEE
Confidence            3334466777888886   45677777778899999987654421222111222333  344688888888777788899


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc-cceEEEEecCCC
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS-SQIKASFSHDGK  174 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  174 (408)
                      +.+.......-.....     ...-..++.+  |++-..+..|+-+.+.|+...... .+.++.+.. .+.++..+++-.
T Consensus       155 vsdpssP~lagrya~~-----~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g~g~~sv~vsdnr~  226 (370)
T COG5276         155 VSDPSSPQLAGRYALP-----GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTGPGTYSVSVSDNRA  226 (370)
T ss_pred             CCCCCCceeeeeeccC-----CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC-eEEEEEecCCceEEEEecCCee
Confidence            8876543322211111     1122445554  778888888999999999765433 333333333 455555555544


Q ss_pred             EEEEeecCceEEEeeecc
Q psy988          175 YIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~  192 (408)
                      +++..  +--+.+-|...
T Consensus       227 y~vvy--~egvlivd~s~  242 (370)
T COG5276         227 YLVVY--DEGVLIVDVSG  242 (370)
T ss_pred             EEEEc--ccceEEEecCC
Confidence            44443  23355556544

>KOG2377|consensus

Probab=95.14  E-value=1.3  Score=38.23  Aligned_cols=134  Identities=10%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce--eecC
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC--KYKG  157 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~  157 (408)
                      +..+.+...|.+.=|.+.............     ...++|.++.|++|++.+++--.+.+|.+++....+...  ..+.
T Consensus        34 NkqlfavrSggatgvvvkgpndDVpiSfdm-----~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c  108 (657)
T KOG2377|consen   34 NKQLFAVRSGGATGVVVKGPNDDVPISFDM-----DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC  108 (657)
T ss_pred             cceEEEEecCCeeEEEEeCCCCCCCceeee-----cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence            333344445556666555443222211111     223589999999999999999999999999884333222  2233


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      ......+...+|+.. .-++.....| +.+|.....           ...++..+.++..|.-..|.++-+.++
T Consensus       109 k~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe-----------krslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  109 KTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE-----------KRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             ccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh-----------hhhhhhhhhcccCccEEEEccccceEe
Confidence            333444778888876 4455554444 677765432           233455667777788788887766554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.11  E-value=0.72  Score=36.75  Aligned_cols=148  Identities=11%  Similarity=0.134  Sum_probs=73.0

Q ss_pred             EEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC-C--CcEEEEecCC----CCceeeeeecCCceeeEEEEEecC
Q psy988            7 LWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL-D--GKLRLWNIPD----KKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         7 vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~-d--g~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      +||+.+++.....- ..-...+=.+-| ||++|.+|+. +  ..+++++...    .........-.....--....-+|
T Consensus        50 ~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   50 EYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            56665554432211 222222234567 8999999876 2  4588888654    111100011122233344445689


Q ss_pred             CCEEEEEecCC-EEEEEeccCC-eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988           79 GKFAVVGSYDG-RCIFYTTDQL-KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        79 ~~~l~~~~~dg-~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      |+.|+.|+... +..+|.-... ...................--.-+...|+|+.|+.+..+  -.+||..+.+.++.+.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence            99999888774 3444443221 111111110000000111122345667899999888765  4456887776655554


Q ss_pred             C
Q psy988          157 G  157 (408)
Q Consensus       157 ~  157 (408)
                      .
T Consensus       207 ~  207 (243)
T PF07250_consen  207 D  207 (243)
T ss_pred             C
Confidence            3

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.04  E-value=1.2  Score=34.36  Aligned_cols=50  Identities=24%  Similarity=0.567  Sum_probs=35.1

Q ss_pred             CeEEEeeCCCeEEEEEccCc--ccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988          130 DKILVTSNDSRIRLYDLRDL--NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       130 ~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                      +.|+.+...+.|.+|++.+.  +....+..-   ..+..+.++..|+||++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEee
Confidence            55655566788999999833  333444433   447789999999999997543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.95  E-value=3.4  Score=39.12  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=54.2

Q ss_pred             ceeeEEEEEecCCCEEEEEecCCEEEEEeccC----------Ceee-E--EEEEeeccccccCCCCeEEEeeCCC---CC
Q psy988           67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQ----------LKYH-T--QIHVRSTRGKNATGRKISGIEPMPG---ED  130 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~-~--~~~~~~~~~~~~~~~~v~~~~~~~~---~~  130 (408)
                      .-.|..+.++|+|++++..+..|. .|-.+..          ++.. .  ...+............|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            346889999999999998888664 3333321          1111 1  1111111112234457999999996   57


Q ss_pred             eEEEeeCCCeEEEEEccCcc
Q psy988          131 KILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus       131 ~l~~~~~dg~i~i~d~~~~~  150 (408)
                      .|++-+.|+.+|+||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89999999999999997533

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=1.3  Score=33.93  Aligned_cols=125  Identities=10%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             eEeEEEeCCce--EEEEEcCCCCCEEEEEeCC--CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCC
Q psy988           15 CLCCFQHIDFV--TAICFHPRDDRYFLSGSLD--GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDG   89 (408)
Q Consensus        15 ~~~~~~h~~~v--~~~~~sp~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg   89 (408)
                      .++++.|...-  ..+.+.  ++.++.+.+.-  ..|++||+.+++......+..  ..+..=-...-|+++.. .-.+|
T Consensus        36 vi~~yphDs~sfTQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~eg  111 (262)
T COG3823          36 VIRTYPHDSTSFTQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEG  111 (262)
T ss_pred             EEEeccCchhhhhcceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccc
Confidence            34444454332  234443  56777777653  469999999998775555542  11211111112333322 23577


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  154 (408)
                      .-..+|.++.+........         +.=..+  ..++..|+.+.....++.-|.++.....+
T Consensus       112 vaf~~d~~t~~~lg~~~y~---------GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~  165 (262)
T COG3823         112 VAFKYDADTLEELGRFSYE---------GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDT  165 (262)
T ss_pred             eeEEEChHHhhhhcccccC---------Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcce
Confidence            8888888877655443321         122333  33566677776666788777776544433

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.91  E-value=1.8  Score=35.83  Aligned_cols=66  Identities=8%  Similarity=0.031  Sum_probs=41.3

Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-----CeEEEe-eCCCeEEEEEccCcccceeecC
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-----DKILVT-SNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      .|.+||+.+.+......+......  ..+.+..+.+....     .+.+.+ ...+.|.++|+.+++..+.+..
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~  106 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN  106 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred             EEEEEECCCCcEEEEEECChHHcc--cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence            677888888887666665543332  34577888776632     244444 3346899999998876555443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.83  E-value=3.9  Score=39.15  Aligned_cols=122  Identities=13%  Similarity=0.113  Sum_probs=67.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCce------eeEEEEEe----------------cCCCEEEEEecCCEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK------LITAANFC----------------ENGKFAVVGSYDGRCI   92 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~------~v~~~~~~----------------~~~~~l~~~~~dg~i~   92 (408)
                      +..|+.++.++.|.-.|..+++.+-.........      ....+.+.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            3456777778888888888887542211111100      11223332                1345788889999999


Q ss_pred             EEeccCCeeeEEEEEeec----cccccCCCCeEEEeeCC--CCCeEEEeeC----------CCeEEEEEccCcccceeec
Q psy988           93 FYTTDQLKYHTQIHVRST----RGKNATGRKISGIEPMP--GEDKILVTSN----------DSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~  156 (408)
                      -.|.++++....+.....    .........-..+.-.|  .+..+++++.          +|.|+-+|.++++.+-.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999999887654321100    00000000000011111  1456666642          5889999999999887664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.82  E-value=1.4  Score=34.02  Aligned_cols=112  Identities=10%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---C---EEEEE-eccCC---eeeEEE
Q psy988           36 RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---G---RCIFY-TTDQL---KYHTQI  105 (408)
Q Consensus        36 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-~~~~~---~~~~~~  105 (408)
                      +.|+.+...+.|.+|++..........+..- +.|..+.++..|++|++--.+   .   .+|+| +.+..   +.....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4454445567899999996655554555543 789999999999999986443   2   55654 22211   111110


Q ss_pred             EEee--cc-------------ccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988          106 HVRS--TR-------------GKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  149 (408)
Q Consensus       106 ~~~~--~~-------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  149 (408)
                      ....  ..             -.-+...++.+++..|-...|++|+. +.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence            0000  00             00112346777888886667777765 57888887643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.82  E-value=1.7  Score=34.89  Aligned_cols=189  Identities=12%  Similarity=0.018  Sum_probs=111.9

Q ss_pred             eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988           70 ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  149 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  149 (408)
                      -..++-.|||..-+++...+.|--.|..+++......        +.......+..-||+..-++=+.. .|.-.|.++.
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL--------g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~  134 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL--------GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL  134 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEec--------CCCCCCceEEECCCCCeeEecCcc-eeEEecCccc
Confidence            4556677888888888878888888887776433221        122345667777887765554333 4555666555


Q ss_pred             ccce-eecCccccccceEEEEecCCCEEEEeecC---------ceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          150 NLSC-KYKGYVNVSSQIKASFSHDGKYIVSGSEN---------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       150 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +... .+.............|.+.|+.-+++...         +.|++|+.                             
T Consensus       135 evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa-----------------------------  185 (353)
T COG4257         135 EVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA-----------------------------  185 (353)
T ss_pred             ceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc-----------------------------
Confidence            4322 22222233345567889999877776421         12223322                             


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-eecee
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQI  298 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~  298 (408)
                                                  ..+.....|+..|||..-++.-.+..|-..|..++... .+..... .....
T Consensus       186 ----------------------------PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsR  236 (353)
T COG4257         186 ----------------------------PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSR  236 (353)
T ss_pred             ----------------------------CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcc-eecCCCccccccc
Confidence                                        12234456677777777777667777777777766322 2222211 22334


Q ss_pred             EEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          299 KASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       299 ~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      .+--+|.|+.-++-...+.+..+|-..
T Consensus       237 riwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         237 RIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ccccCccCcEEEeccCCceeeEeCccc
Confidence            556677888888877778888887665

>KOG1983|consensus

Probab=94.74  E-value=3.3  Score=40.97  Aligned_cols=31  Identities=19%  Similarity=0.520  Sum_probs=26.5

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCC
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD   54 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~   54 (408)
                      .....++|+| ...++|.+...|.|+++-...
T Consensus        36 ~~~~~~afD~-~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDP-TQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeecc-ccceEEEEEecccEEEecccc
Confidence            4567789999 899999999999999997544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.69  E-value=4.2  Score=38.92  Aligned_cols=194  Identities=9%  Similarity=0.025  Sum_probs=108.6

Q ss_pred             CceEEEEeccCCeeEeEEEeCCce---------EEEEEcC---------------CCCCEEEEEeCCCcEEEEecCCCCc
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFV---------TAICFHP---------------RDDRYFLSGSLDGKLRLWNIPDKKV   57 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v---------~~~~~sp---------------~~~~~l~t~~~dg~i~iw~~~~~~~   57 (408)
                      ++.|.-.|..+|+.+-.+.....+         ..+.+..               .++..++.++.|+.+.-.|.++|+.
T Consensus       203 ~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~  282 (764)
T TIGR03074       203 HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKL  282 (764)
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCE
Confidence            456667788888888777633222         1222321               0344788888999999999998876


Q ss_pred             eeeeeecCCceee-------------EEEEEec--CCCEEEEEec----------CCEEEEEeccCCeeeEEEEEeeccc
Q psy988           58 AVWNEVEGQTKLI-------------TAANFCE--NGKFAVVGSY----------DGRCIFYTTDQLKYHTQIHVRSTRG  112 (408)
Q Consensus        58 ~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~  112 (408)
                      .-  .+.. .+.|             ..+.-.|  .+..+++++.          +|.|+-+|.++++............
T Consensus       283 ~W--~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~  359 (764)
T TIGR03074       283 CE--DFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDP  359 (764)
T ss_pred             EE--EecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCc
Confidence            52  2211 1111             0011111  1345566643          6899999999999877665321110


Q ss_pred             cc---------cCCCCe-EEEeeCCCCCeEEEee------------------CCCeEEEEEccCcccceeecCcccc---
Q psy988          113 KN---------ATGRKI-SGIEPMPGEDKILVTS------------------NDSRIRLYDLRDLNLSCKYKGYVNV---  161 (408)
Q Consensus       113 ~~---------~~~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~~~~---  161 (408)
                      ..         .....+ ..+++.+....++.+.                  ..+.|.-.|+++++..-.++...+.   
T Consensus       360 ~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD  439 (764)
T TIGR03074       360 TAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWD  439 (764)
T ss_pred             ccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCcccc
Confidence            00         000111 2344555444444421                  1345777788888887766542221   


Q ss_pred             ----ccceEEEEec-CCC---EEEEeecCceEEEeeeccceeeee
Q psy988          162 ----SSQIKASFSH-DGK---YIVSGSENQCIYIWKTHHDYAKFS  198 (408)
Q Consensus       162 ----~~~~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~  198 (408)
                          ....-+.+.. +|+   .++.++.+|.++++|.++++....
T Consensus       440 ~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       440 MDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             ccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence                1111122333 553   688999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.33  E-value=0.38  Score=37.90  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=48.7

Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEE-EEeecccc-----ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQI-HVRSTRGK-----NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      +..++++|++.+.+|.+++||+.+.+..... .+...-..     ......|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457889999999999999999987754332 11111100     02345778888887776665544 47788887654


Q ss_pred             c
Q psy988          149 L  149 (408)
Q Consensus       149 ~  149 (408)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.22  E-value=2.6  Score=34.53  Aligned_cols=120  Identities=13%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-----CCceeeeeecC-----CceeeEEEEEecCCC------------E
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-----KKVAVWNEVEG-----QTKLITAANFCENGK------------F   81 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~   81 (408)
                      .-+.|+|+| .+.+-++....+...+||...     -.......+..     .....+.+.|+....            .
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            357899999 888888877789999999861     11111122221     124567777764322            3


Q ss_pred             EEEEecCCEEEEEeccCCee---eEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEe-eCCCeEEEEEccC
Q psy988           82 AVVGSYDGRCIFYTTDQLKY---HTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVT-SNDSRIRLYDLRD  148 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~  148 (408)
                      ++.+++||+|.-|...-...   ........  .  .....-..+++..  .+.+|+.+ -..++|.++|-.-
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~--s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDA--S--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEcc--C--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            67788999999998543222   11111110  0  0112234455543  35667666 4478899998653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2280|consensus

Probab=94.14  E-value=2.6  Score=38.95  Aligned_cols=149  Identities=13%  Similarity=0.225  Sum_probs=83.7

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee-eeecCCceeeEEEEEecCCCE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW-NEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      .|+|+++. |+.+..+- ..+.+..+.|+.  ...|++...+|++.+|++-....... .-.......|..+.|..+|-.
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            47788874 55555443 333889999996  45577788999999999865443321 011222334555555555543


Q ss_pred             EEEEecCCEEEEE-eccC-----------------------CeeeEEEEEeec-----------------cccccCCCCe
Q psy988           82 AVVGSYDGRCIFY-TTDQ-----------------------LKYHTQIHVRST-----------------RGKNATGRKI  120 (408)
Q Consensus        82 l~~~~~dg~i~iw-~~~~-----------------------~~~~~~~~~~~~-----------------~~~~~~~~~v  120 (408)
                      +++.  +|.+.+- +.+.                       ............                 .......+.+
T Consensus       142 vlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~  219 (829)
T KOG2280|consen  142 VLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV  219 (829)
T ss_pred             EEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence            3333  3333322 1111                       000000000000                 0001112467


Q ss_pred             EEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988          121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus       121 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ..+..+|+.++|+.=...|.|.+-+....+....+..
T Consensus       220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  220 VKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             EEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            7788999999999889999999998887776666653

>KOG1898|consensus

Probab=94.08  E-value=6.1  Score=38.29  Aligned_cols=175  Identities=11%  Similarity=0.116  Sum_probs=100.3

Q ss_pred             eEEEEeccCCeeEeEEEeCCc-----eEEEEEcCCCCC-EEEEEeC-----------CCcEEEEecCC-CCceeeeeecC
Q psy988            4 TVRLWHISRKECLCCFQHIDF-----VTAICFHPRDDR-YFLSGSL-----------DGKLRLWNIPD-KKVAVWNEVEG   65 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~-----v~~~~~sp~~~~-~l~t~~~-----------dg~i~iw~~~~-~~~~~~~~~~~   65 (408)
                      .|++.|..+++.+..+.|...     |.++.|+..+.. ++++|..           +|.++.|++-. ++...+..-..
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            488999999999888875543     677777763333 4444432           34466666533 22111111111


Q ss_pred             CceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE-
Q psy988           66 QTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY-  144 (408)
Q Consensus        66 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-  144 (408)
                      -.+.|.  +..|...++++| ....+++|++...+.........      ....|..+.+.  +.++++|...-.+.++ 
T Consensus       934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~------~p~~Is~iqt~--~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF------IPNRISSIQTY--GARIVVGDIQESVHFVR 1002 (1205)
T ss_pred             CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc------CceEEEEEeec--ceEEEEeeccceEEEEE
Confidence            223343  445666666665 45689999998776544433322      12367777764  6788888765555554 


Q ss_pred             -EccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          145 -DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       145 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                       +.+..+ +..+....-+..+.++.+ -|-..++.+..-|.+.+..+.
T Consensus      1003 y~~~~n~-l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1003 YRREDNQ-LIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EecCCCe-EEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence             443333 334444333334444433 355568888888888777664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.81  E-value=0.39  Score=37.83  Aligned_cols=77  Identities=16%  Similarity=0.315  Sum_probs=50.7

Q ss_pred             EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceee----eeeccceEEEEecCCchhhhhccCCCCCCCcc
Q psy988          301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  376 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~  376 (408)
                      .+..++.+|++-+.+|.+++||+.+.+.....+.-  ...+..-    ......|..+.++.                +|
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si--~pll~~~~~~~~~~~~~i~~~~lt~----------------~G   78 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSI--APLLNSSPVSDKSSSPNITSCSLTS----------------NG   78 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccH--HHHhcccccccCCCCCcEEEEEEcC----------------CC
Confidence            35567899999999999999999987654432110  0111100    03556788888887                77


Q ss_pred             cEEEEEecCCeEEEEeCCCC
Q psy988          377 YVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       377 ~~l~s~~~dg~v~iw~~~~~  396 (408)
                      .-|++-+ +|..+.|+..-+
T Consensus        79 ~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   79 VPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CEEEEEe-CCCEEEeccccc
Confidence            7777665 577888876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.71  E-value=4.3  Score=35.24  Aligned_cols=159  Identities=8%  Similarity=0.034  Sum_probs=83.3

Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccC-CCcccc----ccccccceEEEEEEeCCcce---eeeecC
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD-RNDFWE----GIKAHNAVVTCAVFAPCPEL---IIAQME  235 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~v~~~~~~~~~~~---~~~~~~  235 (408)
                      +..+-..|||+.++.-+. ..+.++++.+..........+ .+....    .+.--.+...-+..++||-.   +-+...
T Consensus       223 v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~  301 (733)
T COG4590         223 VSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRD  301 (733)
T ss_pred             hHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecC
Confidence            455778999999887655 578888876533222111111 111000    11112233444455555421   111111


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  315 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  315 (408)
                      ..........++.....+..+.-..+.+-+++-...|++.++.....+.+..-... .  .+.-+++||++.++++- ..
T Consensus       302 ~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~--~~~~~~~Sp~~~~Ll~e-~~  377 (733)
T COG4590         302 GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q--APQLVAMSPNQAYLLSE-DQ  377 (733)
T ss_pred             CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c--CcceeeeCcccchheee-cC
Confidence            11112222223333444555555555666777788888888765544333222211 1  33457999999999875 35


Q ss_pred             ceEEEeeccccC
Q psy988          316 QCIYIWKTHHDY  327 (408)
Q Consensus       316 g~i~iw~~~~~~  327 (408)
                      |.|+++.+++..
T Consensus       378 gki~~~~l~Nr~  389 (733)
T COG4590         378 GKIRLAQLENRN  389 (733)
T ss_pred             CceEEEEecCCC
Confidence            789999988753

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.51  E-value=2  Score=38.13  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=24.8

Q ss_pred             CeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988          119 KISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      .|..++..+..+.+++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            488999988889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.49  E-value=4.8  Score=35.16  Aligned_cols=141  Identities=9%  Similarity=0.020  Sum_probs=79.6

Q ss_pred             EEEEEEeCCcceeeeecCCC------CCCCc-eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee-----e
Q psy988          218 VTCAVFAPCPELIIAQMEPD------KSEST-GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-----S  285 (408)
Q Consensus       218 v~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~  285 (408)
                      ...+...+++..+++.....      ..... ..........+..+.+.+++..++++ .+|.+.. ....++.     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            45566778888777654332      11111 23334456678899999999988776 4454433 3333431     1


Q ss_pred             eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceee---eeeccceEEEEecCCchh
Q psy988          286 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI---KAHNAVVTCAVFAPCPEL  362 (408)
Q Consensus       286 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~  362 (408)
                      ...........+..+.|.+++..+++| ..|.+.... ..+            +.....   ..-....+.+.|.+    
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G------------~tW~~~~~~~~~~~~ly~v~f~~----  380 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG------------KSWKRDKGADNIAANLYSVKFFD----  380 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC------------cceeEccccCCCCcceeEEEEcC----
Confidence            222221122357888999888877766 567665553 222            122221   12234577899987    


Q ss_pred             hhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988          363 IIAQMEPDKSESTGYVLVSADFNGVIRVF  391 (408)
Q Consensus       363 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iw  391 (408)
                                  +++.+++| .+|.|.-|
T Consensus       381 ------------~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        381 ------------DKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             ------------CCceEEEe-CCcEEEEe
Confidence                        56556555 58877655

>KOG4460|consensus

Probab=93.25  E-value=2.5  Score=37.29  Aligned_cols=90  Identities=10%  Similarity=0.048  Sum_probs=49.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEee-----ccc----cCccccccccCccccceeeeeeccceEEEEecCCchhhhhc
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWK-----THH----DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  366 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~-----~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  366 (408)
                      .|..+..++.|..++-.+.+|.+.++=     -..    ++.............+. .....-.+..++|+|+.-     
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss~~ltl~Qa~WHP~S~-----  178 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSSTSLTLKQAAWHPSSI-----  178 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccCCceeeeeccccCCcc-----
Confidence            456788899999999999898665542     111    10000000000000000 001122456788888411     


Q ss_pred             cCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          367 MEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       367 ~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                              ....|..-..|..||+|++...+..
T Consensus       179 --------~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  179 --------LDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             --------CCceEEEEecCcEEEEEecCCcchh
Confidence                    1346666677999999999877654

>KOG1916|consensus

Probab=93.25  E-value=0.091  Score=48.76  Aligned_cols=124  Identities=11%  Similarity=0.114  Sum_probs=71.3

Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE-----------EEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK-----------ASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~-----------~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      -++..++..+-.++.+++........ ..+.+|..  .++.           -..||||..+|.+..||.+++|.+.-. 
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~--~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~-  267 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQ--RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT-  267 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH-HHHHhcCC--CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee-
Confidence            34556677778888888877664322 22333322  2222           247999999999999999999987532 


Q ss_pred             ccccccccCccccceeeeeecc-ceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCCCCCCc
Q psy988          328 AKFSSVRRDRNDFWEGIKAHNA-VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNKTKPKH  399 (408)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~  399 (408)
                            ......++..++.|.+ +-.|.-++. ...+....+      .-.++++++ ....+++|.-...++.
T Consensus       268 ------g~~~~rclhewkphd~~p~vC~lc~~-~~~~~v~i~------~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  268 ------GKIVHRCLHEWKPHDKHPRVCWLCHK-QEILVVSIG------KWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ------ccccHhhhhccCCCCCCCceeeeecc-ccccCCccc------eeEEEEecccCCcceeEeeccchhhh
Confidence                  1122256667777773 322222322 111111111      123445544 4567999988777665

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.12  E-value=2.2  Score=30.13  Aligned_cols=94  Identities=11%  Similarity=0.057  Sum_probs=60.8

Q ss_pred             ceEEEEeccC--------CeeEeEEEeCCceEEEEEcC----CCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceee
Q psy988            3 KTVRLWHISR--------KECLCCFQHIDFVTAICFHP----RDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLI   70 (408)
Q Consensus         3 g~i~vwd~~~--------~~~~~~~~h~~~v~~~~~sp----~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v   70 (408)
                      |+|.|++...        ...+..+.-...|++++-.|    ++.+.|+.|+. ..+..||+....-...+.+.   ..|
T Consensus        20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~---DGv   95 (136)
T PF14781_consen   20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVP---DGV   95 (136)
T ss_pred             CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhhCc---cce
Confidence            6788888763        34567777788899986544    14567777765 68999999987766444443   446


Q ss_pred             EEEEEe---cCCCEEEEEecCCEEEEEeccCCe
Q psy988           71 TAANFC---ENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        71 ~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .++.+-   ....-++..+.+..|.-||.+..+
T Consensus        96 n~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   96 NAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             eEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            666553   222335555556677777766554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.09  E-value=5  Score=34.15  Aligned_cols=60  Identities=22%  Similarity=0.294  Sum_probs=39.6

Q ss_pred             eeeeeccCCCCCeEEEecCC------CeEEEEEcCCCeeeeEEe-------------eccceeceeEEEEcCCCCEEEEe
Q psy988          252 KISGIEPMPGEDKILVTSND------SRIRLYDLRDLNLSCKYK-------------GYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                      ...+|++.+++.++++.-.+      ..|+.++.. |+....+.             ........-.++++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            44566666777777776666      788888876 66554442             11223346689999999966654

>KOG4460|consensus

Probab=92.98  E-value=3.4  Score=36.51  Aligned_cols=97  Identities=11%  Similarity=0.124  Sum_probs=58.2

Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  243 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
                      +..+..++.|..++..+.+|.+.++=.+.            .-.-..+......|.|-.+.-+.+.+.            
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~r------------wG~~s~~eDgk~~v~CRt~~i~~~~ft------------  161 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKR------------WGKNSEFEDGKSTVNCRTTPVAERFFT------------  161 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhh------------cCccceecCCCceEEEEeecccceeec------------
Confidence            44566788999999888888554432110            000112233334455555544433331            


Q ss_pred             eeecCCCceeeeeccCCCC---CeEEEecCCCeEEEEEcCCCeeeeE
Q psy988          244 YVLNATGRKISGIEPMPGE---DKILVTSNDSRIRLYDLRDLNLSCK  287 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~  287 (408)
                         ....-.+...+|+|+.   ..+..-+.|..||+||+.....+..
T Consensus       162 ---ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  162 ---SSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             ---cCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence               1233456778898875   6777788999999999987655433

>KOG1900|consensus

Probab=92.85  E-value=1.5  Score=43.07  Aligned_cols=144  Identities=15%  Similarity=0.245  Sum_probs=85.3

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEE--------cCCCCCEEEEEeCCCcEEEEecCCCCc----e---eeeeec
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICF--------HPRDDRYFLSGSLDGKLRLWNIPDKKV----A---VWNEVE   64 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~--------sp~~~~~l~t~~~dg~i~iw~~~~~~~----~---~~~~~~   64 (408)
                      .|+.+.+|+.+++.....++ -...|..+..        -| .=++++.-+.--.|.++-+.-.+.    .   ....+.
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            48999999999977777775 5555666653        23 223344444446677765532211    1   001222


Q ss_pred             CCceeeEEEEEecCCCEEEEEecCCEEEEEecc--CCe--eeE---EE---------EEeecccc-ccCCCCeEEEeeCC
Q psy988           65 GQTKLITAANFCENGKFAVVGSYDGRCIFYTTD--QLK--YHT---QI---------HVRSTRGK-NATGRKISGIEPMP  127 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~--~~~---~~---------~~~~~~~~-~~~~~~v~~~~~~~  127 (408)
                      ...-.|.++....+|+.+++| .||  .+|.+.  ...  ...   ..         ..+..... ..+..+|..+....
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            335678899877788866665 566  444432  110  000   00         00111111 24566899999988


Q ss_pred             CCCeEEEeeCCCeEEEEEccC
Q psy988          128 GEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus       128 ~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      ..+.+.+-++.|.|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            777888889999999999976

>KOG2247|consensus

Probab=92.81  E-value=0.014  Score=49.79  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=83.8

Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      .......|-+.+.-++.++.+..+..||-......                         ..+|.+              
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-------------------------e~n~tg--------------   75 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-------------------------ELNPTG--------------   75 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhcceec-------------------------ccCCch--------------
Confidence            34555778888877888888888888886432110                         011111              


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI  320 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  320 (408)
                                ....++|..++..++ .+-..+.+.+||+.+..-...-.+..+...  =+.|++.+..++.+...|.+.|
T Consensus        76 ----------~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~vi  143 (615)
T KOG2247|consen   76 ----------KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVI  143 (615)
T ss_pred             ----------hHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhccCCccccccccccceEE
Confidence                      112233444444333 356778899999976432211111111111  2689999999999999999999


Q ss_pred             eeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      ++..+.            +.......|..++++++|.+
T Consensus       144 ynhgts------------R~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen  144 YNHGTS------------RRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             Eeccch------------hhhhhhcccccceeEEEecc
Confidence            998875            33333444889999999998

>PRK10115 protease 2; Provisional

Probab=92.56  E-value=9.9  Score=36.27  Aligned_cols=71  Identities=10%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             CeEEEeeCCCCCeEEEeeC-----CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC------ceEEE
Q psy988          119 KISGIEPMPGEDKILVTSN-----DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN------QCIYI  187 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i  187 (408)
                      .+..+.++|++++|+.+..     .-.|++.|+.++..+......   .. ..++|.+|++.|+....+      ..|+.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            4677889999998887632     235888999887643222111   11 348999999877665442      35777


Q ss_pred             eeeccc
Q psy988          188 WKTHHD  193 (408)
Q Consensus       188 ~d~~~~  193 (408)
                      +++.++
T Consensus       204 h~lgt~  209 (686)
T PRK10115        204 HTIGTP  209 (686)
T ss_pred             EECCCC
Confidence            777665

>KOG2377|consensus

Probab=92.56  E-value=3.5  Score=35.77  Aligned_cols=136  Identities=11%  Similarity=-0.007  Sum_probs=76.7

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCc-eeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKV-AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG  112 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  112 (408)
                      |.+..+.+-..|.+.=|.+..... .+...-....++|.++.|++|.+.+|+--.+.+|.+++....+......    ..
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~----~~  107 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT----QE  107 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH----HH
Confidence            333444444556677777654321 1112233456699999999999999999999999999885433221111    11


Q ss_pred             cccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEecCCCEEE
Q psy988          113 KNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      .......|.+..|+.+ .-++.....| +.+|-....+ .++..+.+.  ..+.-..|.++.+.++
T Consensus       108 ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~--~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  108 CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN--LNVNWYMYCPETAVIL  169 (657)
T ss_pred             hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc--cCccEEEEccccceEe
Confidence            1222335888999865 4455554433 5555443221 222222222  2355567777776543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=92.40  E-value=8  Score=34.80  Aligned_cols=154  Identities=16%  Similarity=0.083  Sum_probs=80.6

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      -..+|.++.+.- .+ .+..|+.|| +..||..+++..... ......+|..+.-+-.|+ |..|+.+| +.+.+.++.+
T Consensus       163 ~d~~V~aLv~D~-~g-~lWvgT~dG-L~~fd~~~gkalql~-s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~  236 (671)
T COG3292         163 KDTPVVALVFDA-NG-RLWVGTPDG-LSYFDAGRGKALQLA-SPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWR  236 (671)
T ss_pred             cCccceeeeeec-cC-cEEEecCCc-ceEEccccceEEEcC-CCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcc
Confidence            456788888886 55 477777776 666777777655311 112225566665555554 67777776 6666665522


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      .....       ..-..+.|..+.-..+ ..+..|++.|-.+.--.+.+-.....+.+.....+.++....+|. +-+++
T Consensus       237 ~sn~~-------~~lp~~~I~ll~qD~q-G~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t  307 (671)
T COG3292         237 ASNWG-------PMLPSGNILLLVQDAQ-GELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGT  307 (671)
T ss_pred             ccccC-------CCCcchheeeeecccC-CCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-Eeeec
Confidence            11110       0011123444433332 356667766644332222222222333444445556666666765 66666


Q ss_pred             cCceEEEee
Q psy988          181 ENQCIYIWK  189 (408)
Q Consensus       181 ~dg~i~i~d  189 (408)
                      .+|.+++-+
T Consensus       308 ~~giv~~~~  316 (671)
T COG3292         308 YGGIVRYLT  316 (671)
T ss_pred             cCceEEEec
Confidence            666555543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.30  E-value=2.5  Score=31.94  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=28.0

Q ss_pred             ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          350 VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       350 ~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      .|.+++|||.|-      +    ...+.+||+...+|.|.||.....
T Consensus        87 ~vv~~aWSP~Gl------~----~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGL------G----PNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCC------C----CCCceEEEEEcCCCeEEEEecCCC
Confidence            788999999431      1    113568999999999999997753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.61  E-value=0.93  Score=39.01  Aligned_cols=166  Identities=11%  Similarity=0.118  Sum_probs=94.8

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce----eeE-EEEEecCCCEEEEEecCCEEEEE-
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK----LIT-AANFCENGKFAVVGSYDGRCIFY-   94 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~iw-   94 (408)
                      -...|..+-..| |++.|..-+. .++.++++.+......+......+    .|+ .+..-..|.-++.++.||-|.-| 
T Consensus       219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            456778888999 9998887665 689999987765432211211111    122 22223456678888999988877 


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      |++..........+   ..+-...++..+.-..+.+-+++-+..|++.++.....+.+..-....   .+.-+++||.+.
T Consensus       297 dvr~~~~p~l~h~R---~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~---~~~~~~~Sp~~~  370 (733)
T COG4590         297 DVRRDGQPHLNHIR---NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ---APQLVAMSPNQA  370 (733)
T ss_pred             eeecCCCCcceeee---ccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc---CcceeeeCcccc
Confidence            44433221111111   111112234444333344556677788888887655443322211111   233478999999


Q ss_pred             EEEEeecCceEEEeeecccee
Q psy988          175 YIVSGSENQCIYIWKTHHDYA  195 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~  195 (408)
                      ++++- +.|.++++.+++..+
T Consensus       371 ~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         371 YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             hheee-cCCceEEEEecCCCC
Confidence            88875 457799998876543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.49  E-value=14  Score=35.81  Aligned_cols=168  Identities=11%  Similarity=0.050  Sum_probs=96.4

Q ss_pred             eCCceEEEEEc---CC---CCCEEEEEeCCCcEEEEecCCCCc-------------eeeeeecC---CceeeEEEEEec-
Q psy988           21 HIDFVTAICFH---PR---DDRYFLSGSLDGKLRLWNIPDKKV-------------AVWNEVEG---QTKLITAANFCE-   77 (408)
Q Consensus        21 h~~~v~~~~~s---p~---~~~~l~t~~~dg~i~iw~~~~~~~-------------~~~~~~~~---~~~~v~~~~~~~-   77 (408)
                      -..+|..|+|.   ..   ...+|++= ....+.|+...-.+.             .++..+..   ...+...++|+| 
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            56788888888   21   22455544 446677777221111             11112221   234677899998 


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeec---cccc----cCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST---RGKN----ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +...||.....|...||++..............   .+.-    .....-..+.|.++.+.|++++. ..+.++|+++..
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~  235 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW  235 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence            456899999999999999932211111111111   0100    01133457889888888888876 578999998776


Q ss_pred             cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeecc
Q psy988          151 LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  192 (408)
                      ....+........+..+.-++.  +..|+..  ...|...+...
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             ccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            5332333334455777777776  2333332  25677777765

These proteins are found in fungi.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.38  E-value=3.8  Score=28.98  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=59.5

Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-----CCCeEEEeeCCCeEEEEEcc
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-----GEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~  147 (408)
                      -.|......|++++.-|.|.|.+............ ...........|++++--+     +...|+.|+. ..+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~-~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQD-SDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCcccccccccc-CceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            34555556788888889999998764432111000 0000001123566665433     3445666665 679999998


Q ss_pred             CcccceeecCccccccceEEEE---ec-CCCEEEEeecCceEEEeeec
Q psy988          148 DLNLSCKYKGYVNVSSQIKASF---SH-DGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~l~~~~~dg~i~i~d~~  191 (408)
                      ...-+.....+.+   +.++.+   .. +...+++| .+..|.-||.+
T Consensus        82 ~N~d~Fyke~~DG---vn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~  125 (136)
T PF14781_consen   82 NNSDLFYKEVPDG---VNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE  125 (136)
T ss_pred             cCchhhhhhCccc---eeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence            7665443332222   444444   22 23344444 45667777754

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.30  E-value=9.5  Score=33.40  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEE-EecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRL-WNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~i-w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  103 (408)
                      ...+..++ ++.+++.+.. |.+.. ||-.......  .-......+..+.|.+++..++++ ..|.+.. ....++...
T Consensus       241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~--~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQP--HNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE  314 (398)
T ss_pred             eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEE--ecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence            34455666 6766666543 54433 3321111121  122234568899999998877665 5666444 333332110


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-CccccccceEEEEecCCCEEEEeecC
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                      ......... ......+..+.|.+++. +++++..|.+.... ..++.-.... ...-......+.|.++++-+++| .+
T Consensus       315 ~~~f~~~~~-~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~  390 (398)
T PLN00033        315 DFDFEEADI-KSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND  390 (398)
T ss_pred             ccceeeccc-CCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence            000111000 01113588888887665 45555667666553 3333322222 11112335577777766655554 67


Q ss_pred             ceEEEe
Q psy988          183 QCIYIW  188 (408)
Q Consensus       183 g~i~i~  188 (408)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            776544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.24  E-value=1.5  Score=40.43  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             cCCCEEEEEecCCEEEEEeccC----CeeeEEEEEeec------cc--------cccCCCCeEEEeeCC----CCCeEEE
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQ----LKYHTQIHVRST------RG--------KNATGRKISGIEPMP----GEDKILV  134 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~------~~--------~~~~~~~v~~~~~~~----~~~~l~~  134 (408)
                      ++...++.+..||.+.......    +...........      .+        ..........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4677888888999998887764    111111111111      00        111223455666666    6788999


Q ss_pred             eeCCCeEEEEEccCcccceee
Q psy988          135 TSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus       135 ~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      .+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.13  E-value=8.9  Score=32.77  Aligned_cols=148  Identities=15%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             cceEEEEEEeCCcceeeeecCC-------CCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE
Q psy988          215 NAVVTCAVFAPCPELIIAQMEP-------DKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK  287 (408)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  287 (408)
                      ...+..+.+.|++.++++....       .....-..........+..+.+.++++.++++ ..|.+++=..+.++.-..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            4567888888988776554211       11111222333455678899999999887765 456654323344433222


Q ss_pred             Eeec--cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee---eeccceEEEEecCCchh
Q psy988          288 YKGY--VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK---AHNAVVTCAVFAPCPEL  362 (408)
Q Consensus       288 ~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~  362 (408)
                      ...+  .....+..+.+.|+++.+++| .+|.+.. ....+            +......   .-....+.+.|..    
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G------------~tW~~~~~~~~~~~~~~~~~~~~----  312 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGG------------KTWEKDPVGEEVPSNFYKIVFLD----  312 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCC------------CCCeECCcCCCCCcceEEEEEeC----
Confidence            1111  112346778999988766655 5665543 33333            1222221   1123577788776    


Q ss_pred             hhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          363 IIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       363 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                  +++.++ .+..|.|--|+-.
T Consensus       313 ------------~~~~~~-~G~~G~il~~~~~  331 (334)
T PRK13684        313 ------------PEKGFV-LGQRGVLLRYVGS  331 (334)
T ss_pred             ------------CCceEE-ECCCceEEEecCC
Confidence                        555555 4568888877643

>KOG2247|consensus

Probab=91.08  E-value=0.058  Score=46.33  Aligned_cols=149  Identities=7%  Similarity=0.050  Sum_probs=93.1

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCCEEEEEeccCCe
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDGRCIFYTTDQLK  100 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~  100 (408)
                      -.......|-| .+.-++.++.+-.+..||-......   . ...++....++|..++..++. +-..+.+.+|++.+..
T Consensus        34 lv~pi~~~w~~-e~~nlavaca~tiv~~YD~agq~~l---e-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   34 LVGPIIHRWRP-EGHNLAVACANTIVIYYDKAGQVIL---E-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             ccccceeeEec-CCCceehhhhhhHHHhhhhhcceec---c-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence            33444556778 4444777778888999986543322   1 123455677888888776554 4556899999997643


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      ..+...      ...  ..-.-+.|++....++.+...|.+.+++..+.+.....-.|..  .+.++++.+.+.. +.++
T Consensus       109 tqqLE~------gg~--~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R--Rgtq~av~lEd~v-il~d  177 (615)
T KOG2247|consen  109 TQQLES------GGT--SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR--RGTQIAVTLEDYV-ILCD  177 (615)
T ss_pred             HHHHhc------cCc--chHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc--ceeEEEeccccee-eecC
Confidence            211110      001  1122267888888899998899999999887665544433443  3677888887754 4444


Q ss_pred             cCceEE
Q psy988          181 ENQCIY  186 (408)
Q Consensus       181 ~dg~i~  186 (408)
                      .|..+.
T Consensus       178 cd~~L~  183 (615)
T KOG2247|consen  178 CDNTLS  183 (615)
T ss_pred             cHHHHH
Confidence            444433

>PLN02193 nitrile-specifier protein

Probab=90.98  E-value=12  Score=33.91  Aligned_cols=112  Identities=10%  Similarity=0.061  Sum_probs=55.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCCCceeeeeec--CCceeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCee
Q psy988           34 DDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVE--GQTKLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLKY  101 (408)
Q Consensus        34 ~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~  101 (408)
                      ++.+++.|+.+     ..+..+|+.+.+........  .....-.++ ..-+++..+.|+.+     ..+..||+.+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            56677777765     35788888876654322221  011111112 22356666666654     3466777776554


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----CeEEEEEccCccc
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----SRIRLYDLRDLNL  151 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  151 (408)
                      .....   .............+.+  +++.++.++.+    ..+.+||+.+.+-
T Consensus       307 ~~~~~---~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        307 FHCST---PGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EeCCC---CCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEE
Confidence            32111   0000000111111222  46666666644    4688999987654

>KOG1900|consensus

Probab=90.97  E-value=9.3  Score=38.13  Aligned_cols=166  Identities=13%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEE--------ecCCCEEEEEecCCEE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANF--------CENGKFAVVGSYDGRC   91 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i   91 (408)
                      .|...=..|-+-|.=++.-+|  .|+.+.+|+.+++...  ..+.+-...|..+..        .|.=++++....--.|
T Consensus        76 ~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~--~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei  151 (1311)
T KOG1900|consen   76 SNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNEL--AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEI  151 (1311)
T ss_pred             cCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcc--ccccchhhhheeeeeecCCCCcchhhhheeEEecccceE
Confidence            344444556566634444444  4789999999985543  345555555665554        2333445554455566


Q ss_pred             EEEeccCCeeeEEEEEee-ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc----Cc---c-c-----------
Q psy988           92 IFYTTDQLKYHTQIHVRS-TRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR----DL---N-L-----------  151 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~---~-~-----------  151 (408)
                      .++-+.-.+......... .......+..|.|+....+|+.+++| .||.  +|.+.    .+   + +           
T Consensus       152 ~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls  228 (1311)
T KOG1900|consen  152 VILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLS  228 (1311)
T ss_pred             EEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHH
Confidence            666543222111100000 00011123478889877677655555 5554  44331    10   0 0           


Q ss_pred             --cee-ecCc-cccccceEEEEecCCCEEEEeecCceEEEeeecc
Q psy988          152 --SCK-YKGY-VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       152 --~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                        +.. ++-. .....+..+.....-+.+++-++.|.|..||+..
T Consensus       229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence              000 0111 2233577788887778899999999999999965

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.47  E-value=1.7  Score=23.27  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=23.2

Q ss_pred             CCCCeEEEe-cCCCeEEEEEcCCCeeeeEEee
Q psy988          260 PGEDKILVT-SNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       260 ~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      |++++|+++ ..+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            456656554 4678999999998888777765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.99  E-value=3.4  Score=38.19  Aligned_cols=72  Identities=11%  Similarity=0.075  Sum_probs=43.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCC----CCceeeeee---------c-----------CCceeeEEEEEec----CCCEEEEE
Q psy988           34 DDRYFLSGSLDGKLRLWNIPD----KKVAVWNEV---------E-----------GQTKLITAANFCE----NGKFAVVG   85 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~---------~-----------~~~~~v~~~~~~~----~~~~l~~~   85 (408)
                      +...++.+..||.+.......    +........         .           .....+..++.+.    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            556678888899888877664    111100000         0           1123455566655    77899999


Q ss_pred             ecCCEEEEEeccCCeeeEEE
Q psy988           86 SYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        86 ~~dg~i~iw~~~~~~~~~~~  105 (408)
                      +.|+.+++||+.+++.....
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999885444

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.89  E-value=20  Score=34.75  Aligned_cols=184  Identities=12%  Similarity=0.086  Sum_probs=0.0

Q ss_pred             ceEEEEeccCCeeEeEEE---------eCCceEEEEEc-CCCCCEEEEEeCC---CcEEEEec-----------CCCCce
Q psy988            3 KTVRLWHISRKECLCCFQ---------HIDFVTAICFH-PRDDRYFLSGSLD---GKLRLWNI-----------PDKKVA   58 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~---------h~~~v~~~~~s-p~~~~~l~t~~~d---g~i~iw~~-----------~~~~~~   58 (408)
                      |.|++|-.+.........         -.+.|+..++. .++|+.++.+..+   +.|++|.+           +.....
T Consensus        72 G~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~P  151 (753)
T PF11635_consen   72 GLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLP  151 (753)
T ss_pred             CeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCC


Q ss_pred             eeeeecCCce--------------------eeEEEEEec-------CCCEEEEEecCC----EEEEEeccCCeeeEEEEE
Q psy988           59 VWNEVEGQTK--------------------LITAANFCE-------NGKFAVVGSYDG----RCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        59 ~~~~~~~~~~--------------------~v~~~~~~~-------~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~  107 (408)
                      .......+..                    .++.+.|-+       ....+++.+..+    .|.-|.+...........
T Consensus       152 Sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F  231 (753)
T PF11635_consen  152 SLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAF  231 (753)
T ss_pred             eEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhh


Q ss_pred             eeccccccCC------------------CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee----cCccccccce
Q psy988          108 RSTRGKNATG------------------RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY----KGYVNVSSQI  165 (408)
Q Consensus       108 ~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~  165 (408)
                      ..........                  +.|.++....-+..++.+..||+|.++|..+.+.+...    ..........
T Consensus       232 ~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~  311 (753)
T PF11635_consen  232 QQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLF  311 (753)
T ss_pred             hhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccc


Q ss_pred             E-------------EEEecCCCEEEEeecCceEE
Q psy988          166 K-------------ASFSHDGKYIVSGSENQCIY  186 (408)
Q Consensus       166 ~-------------~~~~~~~~~l~~~~~dg~i~  186 (408)
                      .             ++|||.+.-++.-..+|.+.
T Consensus       312 ~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  312 QAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             ccccccccCCCCceEEECcccceEEEEecCCCce

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.49  E-value=10  Score=31.00  Aligned_cols=140  Identities=11%  Similarity=0.071  Sum_probs=81.3

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      -+..+.++  +++...+..+.-++|.|+.+............      .+.-.++..  .|++..++..+.-+.+.|+.+
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt------~gyaygv~v--sGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT------DGYAYGVYV--SGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC------CceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence            34555554  45677777888899999988765444332221      123344444  488998888777788889876


Q ss_pred             cccce---eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          149 LNLSC---KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       149 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      .+...   ++......  ...++.  .|++-+.+..|+-+.+.|+.......-          ..-..-...+.++..++
T Consensus       158 pssP~lagrya~~~~d--~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvl----------i~~~n~g~g~~sv~vsd  223 (370)
T COG5276         158 PSSPQLAGRYALPGGD--THDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVL----------IGSYNTGPGTYSVSVSD  223 (370)
T ss_pred             CCCceeeeeeccCCCC--ceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeE----------EEEEecCCceEEEEecC
Confidence            54322   22222111  112333  477788888899999999875432211          11111122566777777


Q ss_pred             Ccceeee
Q psy988          226 CPELIIA  232 (408)
Q Consensus       226 ~~~~~~~  232 (408)
                      +--+++.
T Consensus       224 nr~y~vv  230 (370)
T COG5276         224 NRAYLVV  230 (370)
T ss_pred             CeeEEEE
Confidence            6666543

>KOG1983|consensus

Probab=89.24  E-value=13  Score=37.06  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=27.6

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .....++|+|.-+.++.++..|.|.++-....+
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceE
Confidence            356678899999999999999999999766544

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.86  E-value=15  Score=31.82  Aligned_cols=111  Identities=16%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             eEEEecCCCeEEEEEcC---CC----eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccC
Q psy988          264 KILVTSNDSRIRLYDLR---DL----NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD  336 (408)
Q Consensus       264 ~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  336 (408)
                      +.++...+|.+..|.+.   .+    ++++.|....   .+-.|.......+|+.+-++--|.-|+.+....       .
T Consensus       173 ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s---Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~-------~  242 (381)
T PF02333_consen  173 YAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS---QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG-------N  242 (381)
T ss_dssp             EEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS----EEEEEEETTTTEEEEEETTTEEEEEESSCCC--------S
T ss_pred             EEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC---cceEEEEecccCCEEEecCccEEEEEecCCCCC-------C
Confidence            34556778888888764   23    3556665432   456788888888999998887666666653211       1


Q ss_pred             ccccceeee--eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          337 RNDFWEGIK--AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       337 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      ....+....  .....|..++.-....            ..|-+|+|.-.+++..||+....
T Consensus       243 ~~~~v~~~~g~~l~aDvEGlaly~~~~------------g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  243 DRTLVASADGDGLVADVEGLALYYGSD------------GKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             --EEEEEBSSSSB-S-EEEEEEEE-CC------------C-EEEEEEEGGGTEEEEEESSTT
T ss_pred             cceeeecccccccccCccceEEEecCC------------CCeEEEEEcCCCCeEEEEecCCC
Confidence            112222221  2345677777753110            03445666666889999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.85  E-value=5.6  Score=32.77  Aligned_cols=92  Identities=15%  Similarity=0.238  Sum_probs=57.2

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEe------CCCcEEEEecCCCCceeeee-e-cCCceeeEEEE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGS------LDGKLRLWNIPDKKVAVWNE-V-EGQTKLITAAN   74 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~-~-~~~~~~v~~~~   74 (408)
                      .|++||..+.+-...-. -.+.|++|.|.. +.++++.|.      ....+..||.++........ . ..-.++|..+.
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            48899988777655544 678899999986 677777764      34568899998876542111 1 12346788877


Q ss_pred             Eec-CCC-EEEEEe-cCC--EEEEEec
Q psy988           75 FCE-NGK-FAVVGS-YDG--RCIFYTT   96 (408)
Q Consensus        75 ~~~-~~~-~l~~~~-~dg--~i~iw~~   96 (408)
                      +.. |+. +.+.|. .+|  .|..||-
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcC
Confidence            743 333 333433 233  4555543

>PLN02153 epithiospecifier protein

Probab=88.63  E-value=15  Score=31.59  Aligned_cols=68  Identities=9%  Similarity=0.159  Sum_probs=36.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCCCceeeeeecC---CceeeEEEEEecCCCEEEEEecC-----------CEEEEE
Q psy988           34 DDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVEG---QTKLITAANFCENGKFAVVGSYD-----------GRCIFY   94 (408)
Q Consensus        34 ~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw   94 (408)
                      ++.+++.|+.+     ..+.+||..+.+......+..   ........+..-+++..+.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            56677777753     357788887765543222210   01111111222356666666643           246778


Q ss_pred             eccCCee
Q psy988           95 TTDQLKY  101 (408)
Q Consensus        95 ~~~~~~~  101 (408)
                      |..+...
T Consensus       165 d~~~~~W  171 (341)
T PLN02153        165 NIADGKW  171 (341)
T ss_pred             ECCCCeE
Confidence            8877654

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=88.45  E-value=11  Score=38.92  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |...++.+.-+| ++..+=.  .|+.++.||.......+  .-......+..+.-.-||+..+ =+.+ .  +-|+....
T Consensus       361 H~A~LTgv~~~~-~ge~lRl--Hd~~LY~~d~~~~~Wk~--~~~~~d~~~S~Ls~qgdG~lYA-k~~~-~--l~nLSs~~  431 (1774)
T PF11725_consen  361 HIAHLTGVHTDP-DGEQLRL--HDDRLYQFDPNTARWKP--PPDKSDTPFSSLSRQGDGKLYA-KDDD-T--LVNLSSGQ  431 (1774)
T ss_pred             HHHHhhccccCC-CCCeEEe--ecCceeeeccccceecC--CCCcccchhhhhcccCCCceEe-cCCC-c--eeecCCCC
Confidence            666677777777 6665543  46888888877664431  1111233455555555555443 1111 1  22332222


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEEEEEccCcc------cceeecCccccccceEEEEecCC
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLN------LSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      ..           ......+.+...++++.. ++++.....+.+|++....      ....+....+.....++.++++ 
T Consensus       432 ~~-----------~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d-  499 (1774)
T PF11725_consen  432 MS-----------EAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND-  499 (1774)
T ss_pred             cc-----------hhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC-
Confidence            11           111135677778888887 4555555567999886531      1112222223334556777665 


Q ss_pred             CEEEEeecCceEEEeeecc
Q psy988          174 KYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~  192 (408)
                       .|+++..+|.++.=++..
T Consensus       500 -rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  500 -RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             -eEEEEeCCCCEEeccccc
Confidence             688999999998887754

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.41  E-value=16  Score=31.85  Aligned_cols=192  Identities=8%  Similarity=0.028  Sum_probs=0.0

Q ss_pred             ceEEEEeccCCeeEeEEE--eCCceEEEEEc-CCCCCEEEEEeCC-----------------------------------
Q psy988            3 KTVRLWHISRKECLCCFQ--HIDFVTAICFH-PRDDRYFLSGSLD-----------------------------------   44 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~--h~~~v~~~~~s-p~~~~~l~t~~~d-----------------------------------   44 (408)
                      ..+..||+.+.+-...-.  ....-...+.. - ++++++.|+.+                                   
T Consensus       106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~-~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~  184 (376)
T PRK14131        106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLH-NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED  184 (376)
T ss_pred             ccEEEEeCCCCEEEeCCCCCCCcccceEEEEee-CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh


Q ss_pred             ----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----CEEEEE----eccCCeeeEEEEEeeccc
Q psy988           45 ----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----GRCIFY----TTDQLKYHTQIHVRSTRG  112 (408)
Q Consensus        45 ----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw----~~~~~~~~~~~~~~~~~~  112 (408)
                          ..+.+||..+........+......-.++... +++..+.|+.+    .+..+|    |.++.+..........+.
T Consensus       185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~  263 (376)
T PRK14131        185 YFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG  263 (376)
T ss_pred             cCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc


Q ss_pred             cccCCCCeEEEeeCCCCCeEEEeeCC----------------------CeEEEEEccCcccceeecCccccccceEEEEe
Q psy988          113 KNATGRKISGIEPMPGEDKILVTSND----------------------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      ...+.......+...+++.++.|+.+                      ..+.+||+++.+-...-..+...  ....+..
T Consensus       264 ~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~~av~  341 (376)
T PRK14131        264 GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYGVSVS  341 (376)
T ss_pred             CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cceEEEE


Q ss_pred             cCCCEEEEeecCc------eEEEeeeccceeeee
Q psy988          171 HDGKYIVSGSENQ------CIYIWKTHHDYAKFS  198 (408)
Q Consensus       171 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~  198 (408)
                      -+++.+++|+...      .|..++.+.+....+
T Consensus       342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~~  375 (376)
T PRK14131        342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTVE  375 (376)
T ss_pred             eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEEe

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.10  E-value=19  Score=32.12  Aligned_cols=30  Identities=7%  Similarity=0.266  Sum_probs=24.7

Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                      +..+...+..+.+++...+|.|.+|++..+
T Consensus       192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            777888888899999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.96  E-value=14  Score=30.53  Aligned_cols=96  Identities=11%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR  118 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  118 (408)
                      ..|++||..+.+..  ..-.+-.+.|+++.|..+.+.++.|.      ....+..||..+..........    .....+
T Consensus        16 ~~lC~yd~~~~qW~--~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~----s~~ipg   89 (281)
T PF12768_consen   16 PGLCLYDTDNSQWS--SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS----SNSIPG   89 (281)
T ss_pred             CEEEEEECCCCEee--cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc----cccCCC
Confidence            46999999888766  34445678999999987777777664      3457888998876532211100    012235


Q ss_pred             CeEEEeeCC-CCCeEE-Eee-CC--CeEEEEEc
Q psy988          119 KISGIEPMP-GEDKIL-VTS-ND--SRIRLYDL  146 (408)
Q Consensus       119 ~v~~~~~~~-~~~~l~-~~~-~d--g~i~i~d~  146 (408)
                      ++..+.+.. ++..+. .|. .+  ..|..||=
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence            777777643 333344 332 22  34555553

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.86  E-value=2.8  Score=22.36  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=23.0

Q ss_pred             CCCCeEEEee-CCCeEEEEEccCcccceeecC
Q psy988          127 PGEDKILVTS-NDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus       127 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677777765 478999999988877666554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.66  E-value=2.6  Score=22.19  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEE
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFY   94 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw   94 (408)
                      +..+......-....|+|||+.|+-++..   |...||
T Consensus         1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.37  E-value=7.2  Score=29.48  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             CCeEEEeeCCCC------CeEEEeeCCCeEEEEEccC
Q psy988          118 RKISGIEPMPGE------DKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus       118 ~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~  148 (408)
                      ..+..++|+|.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943      3567778899999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.34  E-value=11  Score=30.34  Aligned_cols=141  Identities=8%  Similarity=0.110  Sum_probs=72.1

Q ss_pred             EEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEE
Q psy988           47 LRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI  123 (408)
Q Consensus        47 i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  123 (408)
                      -.+||+.+++...... . ...-..+-.+.+||++|.+|+..   ..+++++..+......  .......-.....-...
T Consensus        48 s~~yD~~tn~~rpl~v-~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~--w~e~~~~m~~~RWYpT~  123 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV-Q-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCD--WTESPNDMQSGRWYPTA  123 (243)
T ss_pred             EEEEecCCCcEEeccC-C-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCC--ceECcccccCCCccccc
Confidence            4579998887654221 1 22223344577899999988753   3577777544000000  00000000111233445


Q ss_pred             eeCCCCCeEEEeeCCC-eEEEEEccCc-ccceee--cC----ccccccceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988          124 EPMPGEDKILVTSNDS-RIRLYDLRDL-NLSCKY--KG----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       124 ~~~~~~~~l~~~~~dg-~i~i~d~~~~-~~~~~~--~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                      ...|||+.|+.|+... ...+|..+.. .....+  ..    ......-..+...|+|+.|+.+..+.  .+||..+.
T Consensus       124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n  199 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN  199 (243)
T ss_pred             eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence            5568999999998764 3445544221 111111  10    01111122456789999998887654  45566554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4659|consensus

Probab=87.02  E-value=37  Score=34.42  Aligned_cols=16  Identities=31%  Similarity=0.436  Sum_probs=11.5

Q ss_pred             ceeEEEEcCCCCEEEE
Q psy988          296 SQIKASFSHDGKYIVS  311 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~  311 (408)
                      .+.+++.+|||...++
T Consensus       663 sp~alaVsPdg~v~IA  678 (1899)
T KOG4659|consen  663 SPYALAVSPDGDVIIA  678 (1899)
T ss_pred             CcceEEECCCCcEEEe
Confidence            4567788888876665

>KOG1898|consensus

Probab=86.65  E-value=34  Score=33.65  Aligned_cols=109  Identities=18%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             eccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccccc
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR  335 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  335 (408)
                      .++.|...++++ +....+++||+...++++......-+..|+.+++  .+..+++|...-.|.++..+...        
T Consensus       939 ~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~-------- 1007 (1205)
T KOG1898|consen  939 GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED-------- 1007 (1205)
T ss_pred             eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC--------
Confidence            345565556655 4456899999998887776654433445666665  56788888877777766554432        


Q ss_pred             Cccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          336 DRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       336 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                         ..+..+..  -...|+++.+-                 |-..+|.|..=|.+.+-.++.
T Consensus      1008 ---n~l~~fadD~~pR~Vt~~~~l-----------------D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1008 ---NQLIVFADDPVPRHVTALELL-----------------DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             ---CeEEEEeCCCccceeeEEEEe-----------------cCCceeeccccCcEEEEECCC
Confidence               12222221  12346666665                 445677777777777776654

>KOG3616|consensus

Probab=86.45  E-value=1.9  Score=39.89  Aligned_cols=78  Identities=26%  Similarity=0.388  Sum_probs=51.1

Q ss_pred             eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      .+-+..+....++++.-+| .++-++.+..||.|++|+........+..   ...+-..+.|...|  |++...|..+.-
T Consensus         6 ~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~---~~~p~~nlv~tnhg--l~~~tsdrr~la   79 (1636)
T KOG3616|consen    6 DCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICE---EAKPKENLVFTNHG--LVTATSDRRALA   79 (1636)
T ss_pred             cccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhh---hcCCccceeeeccc--eEEEeccchhhe
Confidence            3334444566788999999 99999999999999999987654421111   12233344555444  566666777777


Q ss_pred             Eecc
Q psy988           94 YTTD   97 (408)
Q Consensus        94 w~~~   97 (408)
                      |.-+
T Consensus        80 ~~~d   83 (1636)
T KOG3616|consen   80 WKED   83 (1636)
T ss_pred             eecc
Confidence            7544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.92  E-value=23  Score=30.89  Aligned_cols=111  Identities=17%  Similarity=0.205  Sum_probs=63.3

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccC
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT  116 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  116 (408)
                      .+..+..+|.|.-.|.+++..+-...+......+..-.+..+|+ ++.++.+|.+..+|..+++......... .     
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-----  142 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-----  142 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-----
Confidence            45556778888888888877441111111122333333334666 7888889989999998777665554332 0     


Q ss_pred             CCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988          117 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus       117 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                       ..+..-..- ....++..+.++.+.-.|..+++..-...
T Consensus       143 -~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         143 -PYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             -eEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEe
Confidence             011111111 12344444467888888888887655543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=85.44  E-value=18  Score=29.38  Aligned_cols=247  Identities=9%  Similarity=0.006  Sum_probs=133.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ....-..++-.| ||..-+++...+.|--.|..+++...  .-.+.......+..-|||..-++-+.. -|.-.|-++.+
T Consensus        60 ~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~--ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e  135 (353)
T COG4257          60 NGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVET--YPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE  135 (353)
T ss_pred             CCCCccccccCC-CCceEEecCccccceecCCCCCceEE--EecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc
Confidence            334556777888 88888888888888888888888763  223334445666777887765553333 44445554443


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      .. .+.+.    ............|.+.|+.-+++.. |.---.|..+ ..+..+..... .....++..|+|..-++.-
T Consensus       136 vt-~f~lp----~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG-~gpyGi~atpdGsvwyasl  207 (353)
T COG4257         136 VT-RFPLP----LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQG-GGPYGICATPDGSVWYASL  207 (353)
T ss_pred             eE-Eeecc----cccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCC-CCCcceEECCCCcEEEEec
Confidence            21 22221    1222346778889999988887743 2111112221 11222322222 2245688899998877766


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .+..|-..|...+......                        .|+.                     ....-..+-.+|
T Consensus       208 agnaiaridp~~~~aev~p------------------------~P~~---------------------~~~gsRriwsdp  242 (353)
T COG4257         208 AGNAIARIDPFAGHAEVVP------------------------QPNA---------------------LKAGSRRIWSDP  242 (353)
T ss_pred             cccceEEcccccCCcceec------------------------CCCc---------------------ccccccccccCc
Confidence            6677777766443111100                        0110                     011122233455


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      .++.-++....+.+..||-.+.. -.+++.......-.++.....++.-.+--..|.|.-+|-++
T Consensus       243 ig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         243 IGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             cCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence            56666666677778888766543 33333222222334556666666555544556666666654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.42  E-value=22  Score=30.25  Aligned_cols=109  Identities=7%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCCCc----eeeeeecCCceeeEEEEEecCCCEEEEEec-----CCEEEEEeccCC
Q psy988           34 DDRYFLSGSLD-----GKLRLWNIPDKKV----AVWNEVEGQTKLITAANFCENGKFAVVGSY-----DGRCIFYTTDQL   99 (408)
Q Consensus        34 ~~~~l~t~~~d-----g~i~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~   99 (408)
                      ++.+++.|+.+     ..+..+|+.+...    .....+....... +++ .-+++..+.|+.     ...+..||..+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEE-EECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45667777754     3566777766553    1111111111111 111 235666666664     246788888766


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC----eEEEEEccCccc
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS----RIRLYDLRDLNL  151 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~  151 (408)
                      +.....   ......    .....+...+++..+.|+.++    .+..||+++.+-
T Consensus       150 ~W~~~~---~~p~~~----r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELP---DFPGEP----RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECC---CCCCCC----CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            543221   111000    111111223466667776543    356888877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1896|consensus

Probab=85.20  E-value=25  Score=35.08  Aligned_cols=133  Identities=14%  Similarity=0.167  Sum_probs=75.1

Q ss_pred             ceEEEEecc-----CCee-----EeEE---EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCCce
Q psy988            3 KTVRLWHIS-----RKEC-----LCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTK   68 (408)
Q Consensus         3 g~i~vwd~~-----~~~~-----~~~~---~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~   68 (408)
                      |.+.|+|+-     .+++     ++.+   +.++.|.+++=-  +|. |+++. ..+|.||+++. ........+.   -
T Consensus      1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~~-GqKI~v~~l~r~~~ligVaFiD---~ 1137 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSSQ-GQKIIVRKLDRDSELIGVAFID---L 1137 (1366)
T ss_pred             ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEcc-CcEEEEEEeccCCcceeeEEec---c
Confidence            678888873     2322     2222   277889888765  464 55554 36899999944 4443322221   2


Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC--eEEEeeCCCeEEEEEc
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED--KILVTSNDSRIRLYDL  146 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~  146 (408)
                      ++.-....--+++|+.|.--..|.+.-.+..-.......+...     .-.+.++.|.-+|.  .++++..++.|++|-.
T Consensus      1138 ~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~-----~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1138 PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE-----PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCc-----hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            2333333334567777776677776655543322222211111     12577788877766  4567788898888754


Q ss_pred             c
Q psy988          147 R  147 (408)
Q Consensus       147 ~  147 (408)
                      .
T Consensus      1213 ~ 1213 (1366)
T KOG1896|consen 1213 A 1213 (1366)
T ss_pred             C
Confidence            3

>PLN02153 epithiospecifier protein

Probab=84.51  E-value=25  Score=30.18  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             CCCEEEEEeCC-------CcEEEEecCCCCceeeeeecCCce----eeEEEEEecCCCEEEEEecC-----CEEEEEecc
Q psy988           34 DDRYFLSGSLD-------GKLRLWNIPDKKVAVWNEVEGQTK----LITAANFCENGKFAVVGSYD-----GRCIFYTTD   97 (408)
Q Consensus        34 ~~~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~   97 (408)
                      ++.+++.|+.+       ..+.+||+.+.+............    ....+.  -+++.++.|+.+     ..+.+||..
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA--VGTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE--ECCEEEEECCCCCCCccCcEEEEECC
Confidence            45677777753       357888887765442221111111    111222  256666777653     357788887


Q ss_pred             CCee
Q psy988           98 QLKY  101 (408)
Q Consensus        98 ~~~~  101 (408)
                      +.+.
T Consensus       110 t~~W  113 (341)
T PLN02153        110 KNEW  113 (341)
T ss_pred             CCEE
Confidence            6654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	408
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-07
2h9l_A	329	Wdr5delta23 Length = 329		3e-14
2h9l_A	329	Wdr5delta23 Length = 329		5e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		3e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		3e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-04

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 91  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 147
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 199
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 260 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 307
Query: 238 KS 239
           K+
Sbjct: 308 KT 309

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 73
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 74  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 131
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 132 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 240 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 287
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 288 ISTACHPTENIIASAALENDKT 309

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 159
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 211
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 272 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 319
Query: 238 KS 239
           K+
Sbjct: 320 KT 321

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 85
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 86  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 143
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 144 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 299
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 300 ISTACHPTENIIASAALENDKT 321

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 92  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 148
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 200
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 261 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 238 KS 239
           K+
Sbjct: 309 KT 310

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 74
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 132
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 133 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 288
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 289 ISTACHPTENIIASAALENDKT 310

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 166
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 218
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 279 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 326
Query: 238 KS 239
           K+
Sbjct: 327 KT 328

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 92
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 93  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 150
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 151 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 306
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 307 ISTACHPTENIIASAALENDKT 328

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 87  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 143
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 195
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 256 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 303
Query: 238 KS 239
           K+
Sbjct: 304 KT 305

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 69
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 70  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 127
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 128 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 283
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 284 ISTACHPTENIIASAALENDKT 305

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 164
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 216
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 277 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 324
Query: 238 KS 239
           K+
Sbjct: 325 KT 326

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 90
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 148
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 149 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 304
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 305 ISTACHPTENIIASAALENDKT 326

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 92  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 148
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 200
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 261 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 238 KS 239
           K+
Sbjct: 309 KT 310

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 74
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 132
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 133 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 288
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 289 ISTACHPTENIIASAALENDKT 310

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 86  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 142
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 194
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 255 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 238 KS 239
           K+
Sbjct: 303 KT 304

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 68
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 126
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 127 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 282
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 283 ISTACHPTENIIASAALENDKT 304

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 86  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 142
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 194
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 255 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 238 KS 239
           K+
Sbjct: 303 KT 304

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 68
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 126
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 127 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 282
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 283 ISTACHPTENIIASAALENDKT 304

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 82  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 138
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 190
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 251 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 298
Query: 238 KS 239
           K+
Sbjct: 299 KT 300

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 64
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 65  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 122
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 123 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 278
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 279 ISTACHPTENIIASAALENDKT 300

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 145
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 258 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
           K+
Sbjct: 306 KT 307

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 130 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 145
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 258 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
           K+
Sbjct: 306 KT 307

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 130 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 85  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 141
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 193
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 254 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 301
Query: 238 KS 239
           K+
Sbjct: 302 KT 303

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 67
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 68  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 125
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 126 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 281
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 282 ISTACHPTENIIASAALENDKT 303

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 92  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 148
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 200
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 261 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 238 KS 239
           K+
Sbjct: 309 KT 310

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 74
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 132
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 133 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 288
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 289 ISTACHPTENIIASAALENDKT 310

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++   K    
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCL-- 145
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 258 GSEDNLVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
           K+
Sbjct: 306 KT 307

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW    D      ++         + AH+  V+   F     LI++        
Sbjct: 130 FDESVRIW----DVKTGKCLKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++  K     
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV--KTGMCL 145
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 258 GSEDNMVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
           K+
Sbjct: 306 KT 307

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 124/322 (38%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW                    + + AH+  V+   F     LI++        
Sbjct: 130 FDESVRIWDVKTGMCL------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 2   DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           DKT+++W +S  +CL   + H ++V    F+P+ +   +SGS D  +R+W++  K     
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV--KTGMCL 145
Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRC-IFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             +   +  ++A +F  +G   V  SYDG C I+ T       T I        +     
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------DDDNPP 197
Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS 178
           +S ++  P    IL  + D+ ++L+D         Y G+ N    I A+FS   GK+IVS
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII-AQMEPD 237
           GSE+  +YIW                 +  + ++ H  VV      P   +I  A +E D
Sbjct: 258 GSEDNMVYIWNLQ------------TKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 238 KS 239
           K+
Sbjct: 306 KT 307

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 124/322 (38%), Gaps = 48/322 (14%)
Query: 63  VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK--I 120
           + G TK +++  F  NG++    S D     +     K+   I          +G K  I
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------SGHKLGI 71
Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
           S +      + ++  S+D  ++++D+         KG+ N       +F+     IVSGS
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGS 129
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ------- 233
            ++ + IW                    + + AH+  V+   F     LI++        
Sbjct: 130 FDESVRIWDVKTGMCL------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 234 -MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
             +    +    +++     +S ++  P    IL  + D+ ++L+D         Y G+ 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 293 NVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 351
           N    I A+FS   GK+IVSGSE+  +YIW                 +  + ++ H  VV
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ------------TKEIVQKLQGHTDVV 285
Query: 352 TCAVFAPCPELII-AQMEPDKS 372
                 P   +I  A +E DK+
Sbjct: 286 ISTACHPTENIIASAALENDKT 307

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 165/382 (43%), Gaps = 62/382 (16%)
Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
           DKTV+LW+ + +       H   V  + F P D +   S S D  ++LWN   +   +  
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN---RNGQLLQ 297
Query: 62  EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS 121
            + G +  +    F  +G+  +  + D + +     +L      H+++  G +++   + 
Sbjct: 298 TLTGHSSSVWGVAFSPDGQ-TIASASDDKTV-----KLWNRNGQHLQTLTGHSSS---VW 348
Query: 122 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVSGS 180
           G+   P    I   S+D  ++L++ R+  L     G+   SS ++  +FS DG+ I S S
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH---SSSVRGVAFSPDGQTIASAS 404
Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239
           +++ + +W              +RN    + +  H++ V    F+P  +  IA    DK+
Sbjct: 405 DDKTVKLW--------------NRNGQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKT 449
Query: 240 ----ESTGYVLNA-TGRKIS--GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV 292
                  G +L   TG   S  G+   P    I   S+D  ++L++ R+  L     G+ 
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH- 507
Query: 293 NVSSQIKA-SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAV 350
             SS ++  +FS DG+ I S S+++ + +W              +RN    + +  H++ 
Sbjct: 508 --SSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTGHSSS 551
Query: 351 VTCAVFAPCPELIIAQMEPDKS 372
           V    F+P  +  IA    DK+
Sbjct: 552 VWGVAFSPDGQ-TIASASSDKT 572

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 42/214 (19%)
Query: 168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-DFWEGIKAHNAVVTCAVFAPC 226
           +FS DG+ I S S+++ + +W              +RN    + +  H++ V    F+P 
Sbjct: 23  AFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 227 PELIIAQMEPDKS----ESTGYVLNA-TGRKIS--GIEPMPGEDKILVTSNDSRIRLYDL 279
            +  IA    DK+       G +L   TG   S  G+   P    I   S+D  ++L++ 
Sbjct: 69  GQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 126
Query: 280 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN- 338
           R+  L     G+   SS    +FS DG+ I S S+++ + +W              +RN 
Sbjct: 127 RNGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNG 170
Query: 339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 372
              + +  H++ V    F+P  +  IA    DK+
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKT 203

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 38/267 (14%)
Query: 70  ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129
           +   +F     + +   Y GR   +      Y TQ+ VRS +    T   +   + +  +
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQ---VTETPVRAGKFIARK 67
Query: 130 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIW 188
           + I+V S+D RIR+++    N   K   +      I++   H  K Y++SGS++  + +W
Sbjct: 68  NWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------ES 241
              +++A             +  + H   V C  F P      A    D++       +S
Sbjct: 125 NWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 242 TGYVLNATG--RKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSS 296
           T      TG  R ++ ++  P+P +  ++  S+D  I+++D +  +     +G++ NVS 
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 297 QIKASFSHDGKYIVSGSENQCIYIWKT 323
              A F      I+SGSE+  + IW +
Sbjct: 234 ---AVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 38/267 (14%)
Query: 70  ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129
           +   +F     + +   Y GR   +      Y TQ+ VRS +    T   +   + +  +
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQ---VTETPVRAGKFIARK 67
Query: 130 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIW 188
           + I+V S+D RIR+++    N   K   +      I++   H  K Y++SGS++  + +W
Sbjct: 68  NWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------ES 241
              +++A             +  + H   V C  F P      A    D++       +S
Sbjct: 125 NWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 242 TGYVLNATG--RKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSS 296
           T      TG  R ++ ++  P+P +  ++  S+D  I+++D +  +     +G++ NVS 
Sbjct: 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 297 QIKASFSHDGKYIVSGSENQCIYIWKT 323
              A F      I+SGSE+  + IW +
Sbjct: 234 ---AVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 44/270 (16%)
Query: 70  ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE 129
           +   +F     + +   Y GR   +      Y TQ+ VRS +    T   +   + +  +
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQ---VTETPVRAGKFIARK 67
Query: 130 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIW 188
           + I+V S+D RIR+++    N   K   +      I++   H  K Y++SGS++  + +W
Sbjct: 68  NWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP---------CPELII-----AQM 234
              +++A             +  + H   V C  F P         C +  +      Q 
Sbjct: 125 NWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-N 293
            P+ + +TG      G       P+P +  ++  S+D  I+++D +  +     +G++ N
Sbjct: 174 TPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 294 VSSQIKASFSHDGKYIVSGSENQCIYIWKT 323
           VS    A F      I+SGSE+  + IW +
Sbjct: 231 VSF---AVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 38/250 (15%)
Query: 87  YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL 146
           Y GR   +      Y TQ+ VRS +    T   +   + +  ++ I+V S+D RIR+++ 
Sbjct: 33  YSGRVEIW-----NYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84
Query: 147 RDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRN 205
              N   K   +      I++   H  K Y++SGS++  + +W   +++A          
Sbjct: 85  ---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---------- 131
Query: 206 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------ESTGYVLNATG--RKISGI 256
              +  + H   V C  F P      A    D++       +ST      TG  R ++ +
Sbjct: 132 -LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 257 E--PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIVSGS 313
           +  P+P +  ++  S+D  I+++D +  +     +G++ NVS    A F      I+SGS
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGS 247
Query: 314 ENQCIYIWKT 323
           E+  + IW +
Sbjct: 248 EDGTLKIWNS 257

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 116/301 (38%), Gaps = 42/301 (13%)
Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
           H   VT + FHP      +S S D  +++W+           ++G T  +   +F  +GK
Sbjct: 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGK 163
Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
                S D      T     +     +R+  G +     +S +  MP  D I+  S D  
Sbjct: 164 LLASCSAD-----MTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKT 215
Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 200
           I++++++       + G+      ++ +   DG  I S S +Q + +W       K    
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAE-- 271
Query: 201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260
                     ++ H  VV C  +AP             SE+TG     +G+      P P
Sbjct: 272 ----------LREHRHVVECISWAP------ESSYSSISEATGSETKKSGK------PGP 309
Query: 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320
               +L  S D  I+++D+          G+ N    +   F   GK+I+S ++++ + +
Sbjct: 310 F---LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFILSCADDKTLRV 364
Query: 321 W 321
           W
Sbjct: 365 W 365

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD----KKV 57
           D+TVR+W +   +C       D VT +   P D +Y  +GSLD  +R+W+       +++
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 58  AVWNEV-EGQTKLITAANFCENGKFAVVGSYD 88
              NE   G    + +  F  +G+  V GS D
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 24  FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV 83
           ++ ++CF P D ++  +G+ D  +R+W+I ++K+ +   ++G  + I + ++  +G   V
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLV 181
Query: 84  VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIR 142
            GS D     +     +    + +            ++ +   PG+ K I   S D  +R
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIED---------GVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 143 LYD-----LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH 192
           ++D     L +   S    G  +  S     F+ DG+ +VSGS ++ + +W   +
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 2   DKTVRLWHISRKEC------LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
           DKT+ +W ++R E            H  FV+ +     D ++ LSGS DG LRLW++   
Sbjct: 37  DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTG 95
Query: 56  KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL-KYHTQIHVRSTRGKN 114
                    G TK + +  F  + +  V GS D     + T  + KY  Q    S     
Sbjct: 96  TTT--RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS----- 148
Query: 115 ATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
                +S +   P     ++ S   D  +++++L +  L   + G+    + +  + S D
Sbjct: 149 ---EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--TVSPD 203
Query: 173 GKYIVSGSENQCIYIW 188
           G    SG ++    +W
Sbjct: 204 GSLCASGGKDGQAMLW 219

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 2   DKTVRLWHISRKEC------LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
           DKT+ +W ++R E            H  FV+ +     D ++ LSGS DG LRLW++   
Sbjct: 60  DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI-SSDGQFALSGSWDGTLRLWDLTTG 118
Query: 56  KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL-KYHTQIHVRSTRGKN 114
                    G TK + +  F  + +  V GS D     + T  + KY  Q    S     
Sbjct: 119 TTT--RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS----- 171
Query: 115 ATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
                +S +   P     ++ S   D  +++++L +  L   + G+    + +  + S D
Sbjct: 172 ---EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--TVSPD 226
Query: 173 GKYIVSGSENQCIYIW 188
           G    SG ++    +W
Sbjct: 227 GSLCASGGKDGQAMLW 242

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 2   DKTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP------- 53
           D ++RLW++   +C   F  H   V ++ F P D+R  +SG  D  LR+WN+        
Sbjct: 88  DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 54  ----------------------------DKKVAVWN--------EVEGQTKLITAANFCE 77
                                       D  V VW+        +++G T  +T+     
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Query: 78  NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN 137
           +G        DG    +   + +  +++         A G  I+ I   P     +  + 
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSEM---------AAGAPINQICFSPNR-YWMCAAT 256
Query: 138 DSRIRLYDLRD----LNLSCKYKGYVNVSSQ-IKASFSHDGKYIVSGSENQCIYIW 188
           +  IR++DL +    + L+ +++G   +  + +  ++S DG  + SG  +  I +W
Sbjct: 257 EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 50/310 (16%)
Query: 26  TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG 85
           T + + P  DR+    S       + +PD+++      EG +  ++      NG FAV  
Sbjct: 39  TLLSWGPNPDRHSSECS-------YGLPDRRL------EGHSAFVSDVALSNNGNFAVSA 85
Query: 86  SYDGRCIFYT--TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL 143
           S+D     +     Q +Y    H           + +  +   P   +I+    D+ +R+
Sbjct: 86  SWDHSLRLWNLQNGQCQYKFLGHT----------KDVLSVAFSPDNRQIVSGGRDNALRV 135
Query: 144 YDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR 202
           ++++   +    +G + +  S ++ S S D   IVSG  +  + +W    D A    V  
Sbjct: 136 WNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW----DLATGRLVTD 191
Query: 203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP------DKSESTGYVLNATGRKISGI 256
                   +K H   VT    +P   L  +  +       D ++       A G  I+ I
Sbjct: 192 --------LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQI 243
Query: 257 EPMPGEDKILVTSNDSRIRLYDLRD----LNLSCKYKGYVNVSSQ-IKASFSHDGKYIVS 311
              P     +  + +  IR++DL +    + L+ +++G   +  + +  ++S DG  + S
Sbjct: 244 CFSPNR-YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYS 302
Query: 312 GSENQCIYIW 321
           G  +  I +W
Sbjct: 303 GYTDNVIRVW 312

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 140/380 (36%), Gaps = 67/380 (17%)
Query: 5    VRLWHI-SRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV 63
            V LW+I SR +   C  H+ +V  + F P D   FL+ S D  +R+W    KKV      
Sbjct: 871  VELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET--KKV------ 921
Query: 64   EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI 123
                        C+N   A+V   +   +F   + +     + V + RG      K   I
Sbjct: 922  ------------CKNS--AIVLKQEIDVVFQENETMV----LAVDNIRGLQLIAGKTGQI 963
Query: 124  EPMPGE-----------DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
            + +P             + +     D  I++ +L +  +     G+      I+  F+ D
Sbjct: 964  DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ--FTAD 1021
Query: 173  GKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231
            GK ++S SE+  I +W     DY    + +    DF     +     +         +I 
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1081
Query: 232  AQMEPDKSESTGYVLN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290
             ++E D +   G VL+ A     +       +    + S D    L++L+  N      G
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN------G 1135
Query: 291  YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH-----HDYAKFSSVRRDRNDFWEGIK 345
             V  S     +FS DG  + +G +N  I IW        H  A  S          EG  
Sbjct: 1136 CVRCS-----AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS--------VEEGTA 1182
Query: 346  AHNAVVTCAVFAPCPELIIA 365
             H   VT   F+P  + +++
Sbjct: 1183 THGGWVTDVCFSPDSKTLVS 1202

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 140/380 (36%), Gaps = 67/380 (17%)
Query: 5    VRLWHI-SRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV 63
            V LW+I SR +   C  H+ +V  + F P D   FL+ S D  +R+W    KKV      
Sbjct: 864  VELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET--KKV------ 914
Query: 64   EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI 123
                        C+N   A+V   +   +F   + +     + V + RG      K   I
Sbjct: 915  ------------CKNS--AIVLKQEIDVVFQENETMV----LAVDNIRGLQLIAGKTGQI 956
Query: 124  EPMPGE-----------DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD 172
            + +P             + +     D  I++ +L +  +     G+      I+  F+ D
Sbjct: 957  DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ--FTAD 1014
Query: 173  GKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII 231
            GK ++S SE+  I +W     DY    + +    DF     +     +         +I 
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074
Query: 232  AQMEPDKSESTGYVLN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290
             ++E D +   G VL+ A     +       +    + S D    L++L+  N      G
Sbjct: 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN------G 1128
Query: 291  YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH-----HDYAKFSSVRRDRNDFWEGIK 345
             V  S     +FS DG  + +G +N  I IW        H  A  S          EG  
Sbjct: 1129 CVRCS-----AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS--------VEEGTA 1175
Query: 346  AHNAVVTCAVFAPCPELIIA 365
             H   VT   F+P  + +++
Sbjct: 1176 THGGWVTDVCFSPDSKTLVS 1195

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
           H + +  + FHPRD    LS S D  LRLWNI  D  VA++  VEG    + +A++
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 205

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
           H + +  + FHPRD    LS S D  LRLWNI  D  VA++  VEG    + +A++
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 168

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
           H + +  + FHPRD    LS S D  LRLWNI  D  VA++  VEG    + +A++
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 168

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
           H + +  + FHPRD    LS S D  LRLWNI  D  VA++  VEG    + +A++
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKVAVWNEVEGQTKLITAANF 75
           H + +  + FHPRD    LS S D  LRLWNI  D  VA++  VEG    + +A++
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 164

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 16/194 (8%)
Query: 2   DKTVRLWHISRKECLCCFQ------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
           DK++ LW +++ +            H  FV  +     D ++ LSGS DG+LRLW++   
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAAG 462
Query: 56  KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT-DQLKYHTQIHVRSTRGKN 114
                    G TK + +  F  + +  V  S D     + T  + KY         R   
Sbjct: 463 VST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520
Query: 115 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 174
           +  R      P   +  I+  S D  +++++L +  L     G+    S +  + S DG 
Sbjct: 521 SCVR----FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV--AVSPDGS 574
Query: 175 YIVSGSENQCIYIW 188
              SG ++  + +W
Sbjct: 575 LCASGGKDGVVLLW 588

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 42/190 (22%)
Query: 133 LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI-KASFSHDGKYIVSGSENQCIYIWKTH 191
           + +S D  +RL+DLR       YK +V   S++   +FS D + I+S    + I +W   
Sbjct: 92  ISSSWDKTLRLWDLR---TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
Query: 192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR 251
            +  KFSS  ++ +  W         V+C  ++P                    +  +  
Sbjct: 149 GE-CKFSSAEKENHSDW---------VSCVRYSP--------------------IMKSAN 178
Query: 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311
           K+    P            D R+++++    N   +Y    + S+    S S +GKYI +
Sbjct: 179 KVQPFAPY-----FASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 312 GSENQCIYIW 321
           G +++ + IW
Sbjct: 231 GGKDKKLLIW 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.92
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.84
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.81
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.78
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.76
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.75
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.72
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.61
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.58
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.5
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.46
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.26
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.24
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.24
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.22
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.18
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.17
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.13
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.09
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.09
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.08
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.07
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.07
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.05
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.04
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.01
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.83
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.68
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.67
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.64
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.6
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.45
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.42
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.32
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.24
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.1
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.03
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.02
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.0
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.96
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.92
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.74
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.69
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.66
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.65
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.6
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.55
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.32
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.29
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.24
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.16
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.12
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.1
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.96
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.93
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.89
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.87
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.86
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.67
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.57
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.54
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.42
3ott_A	758	Two-component system sensor histidine kinase; beta	96.16
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.03
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.33
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.32
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.21
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.91
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	94.14
3ott_A	758	Two-component system sensor histidine kinase; beta	94.03
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.68
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.54
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.02
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.41
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.15
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.87
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.66
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.73
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.66
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	82.57
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	82.46
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	80.39

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.2e-53  Score=384.67  Aligned_cols=357  Identities=16%  Similarity=0.234  Sum_probs=273.4

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee------------------
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE------------------   62 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------------------   62 (408)
                      +++|+|||+.+++....+. |.+.|++++|+| ++++||+|+.||+|+|||+.+++......                  
T Consensus        38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~  116 (611)
T 1nr0_A           38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  116 (611)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCEEEEecCCCcccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence            4689999999888888886 999999999999 99999999999999999986543222122                  


Q ss_pred             --------------------------ecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988           63 --------------------------VEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA  115 (408)
Q Consensus        63 --------------------------~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  115 (408)
                                                +.+|...|.+++|+|++. .|++++.|++|++||..+.+....        ..+
T Consensus       117 ~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------l~~  188 (611)
T 1nr0_A          117 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------FGE  188 (611)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------ECC
T ss_pred             EEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------ecc
Confidence                                      345566666777777665 477888888888888776543322        235


Q ss_pred             CCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-------CccccccceEEEEecCCCEEEEeecCceEEEe
Q psy988          116 TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-------GYVNVSSQIKASFSHDGKYIVSGSENQCIYIW  188 (408)
Q Consensus       116 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  188 (408)
                      |...|.+++|+|++++|++++.|+.|++||+.+++....+.       +|.  ..+.+++|+|++++|++++.|++|++|
T Consensus       189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~--~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS--GSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS--SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC--CCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            67899999999999999999999999999999988777663       343  458899999999999999999999999


Q ss_pred             eeccceeeeeeccc-------------------------------CCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          189 KTHHDYAKFSSVRR-------------------------------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       189 d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |++++.........                               ........+.+|...|.+++|+|+++++++...+.
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            99876543221100                               01123345568999999999999999988754322


Q ss_pred             C-------CCCc-------------------------------eeeec--------------------------------
Q psy988          238 K-------SEST-------------------------------GYVLN--------------------------------  247 (408)
Q Consensus       238 ~-------~~~~-------------------------------~~~~~--------------------------------  247 (408)
                      .       ....                               ..++.                                
T Consensus       347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  426 (611)
T 1nr0_A          347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA  426 (611)
T ss_dssp             CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred             cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence            1       0000                               00000                                


Q ss_pred             -------------------CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE-EeeccceeceeEEEEcCCCC
Q psy988          248 -------------------ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       248 -------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~  307 (408)
                                         .+...+.+++|+|++++|++|+.|++|++||+.+++.... ..+|  ...|.+++|+|||+
T Consensus       427 ~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h--~~~v~~v~fspdg~  504 (611)
T 1nr0_A          427 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH--PAEITSVAFSNNGA  504 (611)
T ss_dssp             EEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC--SSCEEEEEECTTSS
T ss_pred             EEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCC--CCceEEEEECCCCC
Confidence                               0224467899999999999999999999999987654321 1344  44899999999999


Q ss_pred             EEEEecCCceEEEeeccccCccccccccCccccce--eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988          308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE--GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                      +|++++.|+.|++|++.+..           +++.  .+.+|...|.+++|+|                ||++||+|+.|
T Consensus       505 ~las~s~d~~v~~w~~~~~~-----------~~~~~~~~~~H~~~V~~v~fsp----------------dg~~lasgs~D  557 (611)
T 1nr0_A          505 FLVATDQSRKVIPYSVANNF-----------ELAHTNSWTFHTAKVACVSWSP----------------DNVRLATGSLD  557 (611)
T ss_dssp             EEEEEETTSCEEEEEGGGTT-----------EESCCCCCCCCSSCEEEEEECT----------------TSSEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEcCCCC-----------ceeeeeeeeecccceeEEEECC----------------CCCEEEEEECC
Confidence            99999999999999998621           2222  2345999999999999                99999999999


Q ss_pred             CeEEEEeCCCCCC
Q psy988          386 GVIRVFLNKTKPK  398 (408)
Q Consensus       386 g~v~iw~~~~~~~  398 (408)
                      ++|++|++.++..
T Consensus       558 ~~v~lW~~~~~~~  570 (611)
T 1nr0_A          558 NSVIVWNMNKPSD  570 (611)
T ss_dssp             SCEEEEETTCTTS
T ss_pred             CcEEEEECCCccc
Confidence            9999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.7e-53  Score=365.40  Aligned_cols=306  Identities=20%  Similarity=0.304  Sum_probs=261.6

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      .+|.++|++++|+| ++.+|++|+.||+|++||+.+++..  ..+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus       105 ~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          105 SGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             ECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             cccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE--EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            34999999999999 9999999999999999999998876  68999999999999999999999999999999999988


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .+....        ..+|...|.+++|+|++++|++++.|+.|++||++++.++..+.+|...  +.++.++|++++|++
T Consensus       182 ~~~~~~--------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          182 FECIRT--------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--VRMVRPNQDGTLIAS  251 (410)
T ss_dssp             SCEEEC--------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECTTSSEEEE
T ss_pred             CceeEE--------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc--EEEEEECCCCCEEEE
Confidence            654322        2356679999999999999999999999999999999988888877654  778999999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      ++.|+.|++||+.++.            ....+..|...|.+++|+|++.+........               ......
T Consensus       252 ~s~D~~v~vwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~  304 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKE------------CKAELREHRHVVECISWAPESSYSSISEATG---------------SETKKS  304 (410)
T ss_dssp             EETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCS---------------CC----
T ss_pred             EcCCCeEEEEECCCCc------------eeeEecCCCceEEEEEEcCcccccchhhhcc---------------cccccc
Confidence            9999999999997643            3345678889999999999876542211100               011122


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      .+.+.+|++|+.|+.|++||+++++++..+.+|..  .|.+++|+|+|++|++|+.||.|++||+.++            
T Consensus       305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------------  370 (410)
T 1vyh_C          305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK------------  370 (410)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS------------
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------
Confidence            34578999999999999999999999999988765  7899999999999999999999999999876            


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      +++..+.+|...|++++|+|                ++.+|++|+.||+|++|+++
T Consensus       371 ~~~~~~~~h~~~v~~l~~~~----------------~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          371 RCMKTLNAHEHFVTSLDFHK----------------TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCCEEEECCSSCEEEEEECS----------------SSSCEEEEETTSEEEEEC--
T ss_pred             ceEEEEcCCCCcEEEEEEcC----------------CCCEEEEEeCCCcEEEEeCC
Confidence            56778899999999999999                89999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.8e-52  Score=347.15  Aligned_cols=287  Identities=17%  Similarity=0.277  Sum_probs=247.2

Q ss_pred             eCCceEEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEecc
Q psy988           21 HIDFVTAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        21 h~~~v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~   97 (408)
                      |.+.|++++|+|.   ++.+|+||+.|++|++|++..+.......+.+|...|.+++|++++.++++++.|++|++||+.
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~  110 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE  110 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            9999999999982   3679999999999999999887765556789999999999999999999999999999999999


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      +++....+.        .+...+.+++|+|++++|++++.+|.|++||+++++....+..+..  .+.+++|+|++++|+
T Consensus       111 ~~~~~~~~~--------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~la  180 (321)
T 3ow8_A          111 NGKQIKSID--------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPDGKYLA  180 (321)
T ss_dssp             TTEEEEEEE--------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTTSSEEE
T ss_pred             CCCEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCCCCEEE
Confidence            887655443        2345788999999999999999999999999999888777766544  478899999999999


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +++.||.|++||++++..            +..+.                                   .|...|.+++
T Consensus       181 sg~~dg~i~iwd~~~~~~------------~~~~~-----------------------------------~h~~~v~~l~  213 (321)
T 3ow8_A          181 SGAIDGIINIFDIATGKL------------LHTLE-----------------------------------GHAMPIRSLT  213 (321)
T ss_dssp             EEETTSCEEEEETTTTEE------------EEEEC-----------------------------------CCSSCCCEEE
T ss_pred             EEcCCCeEEEEECCCCcE------------EEEEc-----------------------------------ccCCceeEEE
Confidence            999999999999875422            12222                                   3445566666


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  337 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  337 (408)
                      |+|++++|++++.|+.|++||+++++....+.+|..  .|.+++|+|++++|++++.|+.|++||+.++           
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-----------  280 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-----------  280 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT-----------
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----------
Confidence            777778889999999999999999999988888765  7899999999999999999999999999886           


Q ss_pred             cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                       +++..+.+|...|.+++|+|                ++++|++++.||.|++||.+
T Consensus       281 -~~~~~~~~h~~~v~~v~~s~----------------~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 -TCVHTFFDHQDQVWGVKYNG----------------NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             -EEEEEECCCSSCEEEEEECT----------------TSSEEEEEETTCCEEEEECC
T ss_pred             -EEEEEEcCCCCcEEEEEECC----------------CCCEEEEEeCCCeEEEEeCC
Confidence             67778889999999999999                99999999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-51  Score=377.05  Aligned_cols=358  Identities=15%  Similarity=0.181  Sum_probs=280.6

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-------CCceeeEE
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-------GQTKLITA   72 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~v~~   72 (408)
                      .|++|++||..+++++..+. |.+.|++++|+| ++++|++|+.|++|++||+.+++..  ..+.       +|...|.+
T Consensus       168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~--~~~~~~~~~~~~h~~~V~~  244 (611)
T 1nr0_A          168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKT--GVFEDDSLKNVAHSGSVFG  244 (611)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--EECBCTTSSSCSSSSCEEE
T ss_pred             CCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEe--eeeccccccccccCCCEEE
Confidence            38999999999999988887 999999999999 9999999999999999999888765  3442       79999999


Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEe-----------------------------------eccccccCC
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVR-----------------------------------STRGKNATG  117 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~  117 (408)
                      ++|+|+|++|++++.|++|++||+.+++....+...                                   ......+|.
T Consensus       245 v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~  324 (611)
T 1nr0_A          245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN  324 (611)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence            999999999999999999999999987765443211                                   001124677


Q ss_pred             CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee-cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceee
Q psy988          118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (408)
                      ..|.+++|+|++++|++++.|+.|++||+.+++....+ ..|  ...+.+++|++++ .+++++.|+.+++|+.......
T Consensus       325 ~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h--~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~  401 (611)
T 1nr0_A          325 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH--ATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVD  401 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC--SSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSC
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC--cceEEEEEECCCC-cEEEEEcCCceEEeecCCcccc
Confidence            89999999999999999999999999999988766554 233  3457889999766 6889999999999997653211


Q ss_pred             ee--------------ecccCC---------------CccccccccccceEEEEEEeCCcceeeeecCCCCC-------C
Q psy988          197 FS--------------SVRRDR---------------NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-------E  240 (408)
Q Consensus       197 ~~--------------~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~  240 (408)
                      ..              ....+.               ...+..+ .+...+.+++|+|++++++++..+...       .
T Consensus       402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~  480 (611)
T 1nr0_A          402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA  480 (611)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred             ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC
Confidence            00              000000               0001111 245678899999999999887655321       1


Q ss_pred             Cc-eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC-CeeeeE--EeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          241 ST-GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCK--YKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       241 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                      .. ......|...|.+++|+|++++|++++.|++|++||+.+ +++...  +..|.  ..|.+++|+|||++||+|+.|+
T Consensus       481 ~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~--~~V~~v~fspdg~~lasgs~D~  558 (611)
T 1nr0_A          481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT--AKVACVSWSPDNVRLATGSLDN  558 (611)
T ss_dssp             EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecc--cceeEEEECCCCCEEEEEECCC
Confidence            10 111246888999999999999999999999999999987 555443  22244  4899999999999999999999


Q ss_pred             eEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      +|++|++..+..          ..+..+.+| ...|.+++|+|                +++ |++++.||+|++|+++
T Consensus       559 ~v~lW~~~~~~~----------~~~~~~~~h~~~~v~~v~fs~----------------d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          559 SVIVWNMNKPSD----------HPIIIKGAHAMSSVNSVIWLN----------------ETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             CEEEEETTCTTS----------CCEEETTSSTTSCEEEEEEEE----------------TTE-EEEEETTSCEEEEECC
T ss_pred             cEEEEECCCccc----------ccchhhccCcccCeeEEEEcC----------------CCE-EEEecCCCCEEEEecc
Confidence            999999987521          112456689 89999999999                888 9999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.7e-51  Score=370.09  Aligned_cols=329  Identities=22%  Similarity=0.393  Sum_probs=283.0

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |+.|++||.. ++.+..+. |...|.+++|+| ++++|++++.|+.|++|+... +..  ..+.+|...|.+++|+|+++
T Consensus       242 d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~-~~~--~~~~~h~~~v~~~~~~~~~~  316 (577)
T 2ymu_A          242 DKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG-QLL--QTLTGHSSSVWGVAFSPDGQ  316 (577)
T ss_dssp             TSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-CEE--EEECCCSSCEEEEEECTTSS
T ss_pred             CCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCC-cEE--EEEecCCCCeEEEEECCCCC
Confidence            7899999975 55566665 999999999999 999999999999999999754 333  57889999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      +|++++.|+.|++||........         ...|...+.+++|+|+++.+++++.|+.|++||. +++.+..+..|..
T Consensus       317 ~l~t~~~d~~i~~w~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~  386 (577)
T 2ymu_A          317 TIASASDDKTVKLWNRNGQHLQT---------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  386 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEE---------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS
T ss_pred             EEEEEeCCCeEEEEeCCCCeeEE---------EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC
Confidence            99999999999999987654211         1245678999999999999999999999999996 4666777776654


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC--
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK--  238 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--  238 (408)
                        .+.+++|+|++++|++++.|+.|++||...             ..+..+..|...|.+++|+|+++++++...+..  
T Consensus       387 --~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          387 --SVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             --CEEEEEECTTSSCEEEEETTSEEEEECTTC-------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             --CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence              488999999999999999999999999532             334556789999999999999999987654432  


Q ss_pred             ----CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          239 ----SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       239 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                          .......+..|...|.+++|+|++++|++++.|+.|++||. +++++..+.+|..  .|++++|+|+|++|++++.
T Consensus       452 ~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             EEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEET
T ss_pred             EEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC--CEEEEEEcCCCCEEEEEEC
Confidence                33445566788999999999999999999999999999995 6788888888765  7899999999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      ||.|++||...             +++..+.+|.+.|++++|+|                ||++|+|++.||+|++||
T Consensus       529 dg~v~lwd~~~-------------~~~~~~~~h~~~v~~~~fs~----------------dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          529 DKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSP----------------DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSEEEEECTTS-------------CEEEEEECCSSCEEEEEECT----------------TSSCEEEEETTSCEEEEC
T ss_pred             cCEEEEEeCCC-------------CEEEEEcCCCCCEEEEEEcC----------------CCCEEEEEeCCCEEEEeC
Confidence            99999999643             56778899999999999999                999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-50  Score=343.65  Aligned_cols=294  Identities=18%  Similarity=0.355  Sum_probs=247.9

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      +....+. |.+.|++++|+| ++++|++|+.||+|++||+.+++..  ..+..|...|.+++|+|++++|++++.|+.++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE--EEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcc--eEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            3445554 999999999999 9999999999999999999988766  67888999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +|++.+........    ....+|...|.++.|++++ .+++++.|+.|++||+++++....+.+|...  +.+++|+|+
T Consensus       123 iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~  195 (340)
T 1got_B          123 IYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPD  195 (340)
T ss_dssp             EEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTT
T ss_pred             EEECccCCCcceeE----EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCc--eEEEEECCC
Confidence            99998754321111    1123566789999999866 5899999999999999999988888877654  889999999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      +++|++|+.|+.|++||++++..            ...+.                                   .|...
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~~~~------------~~~~~-----------------------------------~h~~~  228 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVREGMC------------RQTFT-----------------------------------GHESD  228 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSE------------EEEEC-----------------------------------CCSSC
T ss_pred             CCEEEEEeCCCcEEEEECCCCee------------EEEEc-----------------------------------CCcCC
Confidence            99999999999999999865321            12223                                   34455


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                      |.+++|+|++++|++++.|++|++||+++++.+..+........+.+++|+|+|++|++|+.||.|++||+.+.      
T Consensus       229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------  302 (340)
T 1got_B          229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------  302 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC------
Confidence            66666666777889999999999999999888777765444457899999999999999999999999999876      


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                            +.+..+.+|.+.|.+++|+|                +|++|+||+.||.|++||
T Consensus       303 ------~~~~~~~~h~~~v~~~~~s~----------------dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 ------DRAGVLAGHDNRVSCLGVTD----------------DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEEECCSSCEEEEEECT----------------TSSCEEEEETTSCEEEEC
T ss_pred             ------cEeeEeecCCCcEEEEEEcC----------------CCCEEEEEcCCccEEecC
Confidence                  56677889999999999999                999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-51  Score=353.58  Aligned_cols=317  Identities=17%  Similarity=0.322  Sum_probs=255.6

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      .+..|+..+..+.+.+. |.+.|++++|+| ++++|++|+.||+|+|||+.+++..  ..+..|...|.+++|+|+|++|
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l  123 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSV  123 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEE
T ss_pred             cccccccceeEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCCEE
Confidence            34567777888888887 999999999999 9999999999999999999988766  6888999999999999999999


Q ss_pred             EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceeecC---c
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKG---Y  158 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~  158 (408)
                      ++++.|+.+++|++.+...... .........+|.+.+.++.|.|++ ..|++++.|+.|++||+++++.+..+..   .
T Consensus       124 as~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~  202 (380)
T 3iz6_a          124 ACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS  202 (380)
T ss_dssp             EECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred             EEeeCCCcEEEEECCCCccccC-CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence            9999999999999875321100 011112235677889999999974 5799999999999999999987766622   1


Q ss_pred             cccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          159 VNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      .+...+.++++++ ++++|++|+.|+.|++||++...           ..+..+.                         
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-----------~~~~~~~-------------------------  246 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-----------RAVRTYH-------------------------  246 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----------CCCEEEC-------------------------
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----------cceEEEC-------------------------
Confidence            2234578889977 88999999999999999986321           1122223                         


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-----eeceeEEEEcCCCCEEEEe
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-----VSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~  312 (408)
                                .|...|.+++|+|++++|++++.|++|++||+++++.+..+..+..     ...+.+++|+|+|++|++|
T Consensus       247 ----------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  316 (380)
T 3iz6_a          247 ----------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG  316 (380)
T ss_dssp             ----------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred             ----------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE
Confidence                      4555666666777778889999999999999999998888765432     1247899999999999999


Q ss_pred             cCCceEEEeeccccCccccccccCccccceee----eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeE
Q psy988          313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVI  388 (408)
Q Consensus       313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  388 (408)
                      +.||.|++||+..+            +.+..+    .+|.+.|++++|+|                +|++|+||+.||+|
T Consensus       317 ~~dg~i~vwd~~~~------------~~~~~~~~~~~~h~~~v~~l~~s~----------------dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          317 YSNGDCYVWDTLLA------------EMVLNLGTLQNSHEGRISCLGLSS----------------DGSALCTGSWDKNL  368 (380)
T ss_dssp             CTTSCEEEEETTTC------------CEEEEECCSCSSCCCCCCEEEECS----------------SSSEEEEECTTSCE
T ss_pred             ECCCCEEEEECCCC------------ceEEEEecccCCCCCceEEEEECC----------------CCCEEEEeeCCCCE
Confidence            99999999998775            233333    57999999999999                99999999999999


Q ss_pred             EEEeCCCCCC
Q psy988          389 RVFLNKTKPK  398 (408)
Q Consensus       389 ~iw~~~~~~~  398 (408)
                      ++|++...++
T Consensus       369 ~iW~~~~~~~  378 (380)
T 3iz6_a          369 KIWAFSGHRK  378 (380)
T ss_dssp             EEEECCSSSS
T ss_pred             EEEecCCCcc
Confidence            9999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.3e-50  Score=339.05  Aligned_cols=310  Identities=15%  Similarity=0.162  Sum_probs=230.0

Q ss_pred             EEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC---------CceeeeeecCCceeeEEEEEe
Q psy988            6 RLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK---------KVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         6 ~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      +.|++....+.   .|...|.+++|+| ||++|++++ |+++++||....         ..........+...|.+++|+
T Consensus        17 r~w~~~~~~~~---~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s   91 (344)
T 4gqb_B           17 REWNLPPNAPA---CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV   91 (344)
T ss_dssp             ------CCSCS---SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred             cccCCCCCCcc---cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence            56666544332   2778899999999 999999887 678888873210         000111223355679999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      |++ .|++++.||+|++||+++++........    ..+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus        92 ~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~  166 (344)
T 4gqb_B           92 GER-GILVASDSGAVELWELDENETLIVSKFC----KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR  166 (344)
T ss_dssp             TTT-EEEEEETTSEEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCC-eEEEEECCCEEEEEeccCCCceeEeecc----ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            985 6889999999999999988765443322    13567899999999999999999999999999999999999998


Q ss_pred             CccccccceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          157 GYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      +|...  +.+++|++++. +|++++.|+.|++||++++.....          .....+...                  
T Consensus       167 ~h~~~--V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----------~~~~~~~~~------------------  216 (344)
T 4gqb_B          167 AHAAQ--VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----------IGCSAPGYL------------------  216 (344)
T ss_dssp             CCSSC--EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE----------CC----CCC------------------
T ss_pred             CcCCc--eEEEEecCCCCCceeeeccccccccccccccceeee----------eecceeecc------------------
Confidence            87755  88999999885 688999999999999976432211          001122223                  


Q ss_pred             CCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC-CEEEEec
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGS  313 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~  313 (408)
                                       +.+++|+| ++++|++|+.|+.|++||+++++++..+.+|..  .|.+++|+|++ ++|++|+
T Consensus       217 -----------------~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          217 -----------------PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             -----------------EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEE
T ss_pred             -----------------ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEe
Confidence                             44455555 345678899999999999999999999998766  88999999998 5899999


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc-cEEEEEecCCeEEEEe
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLVSADFNGVIRVFL  392 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iw~  392 (408)
                      .|++|+|||+.++            + +..+.+|.+.|++++|+|                ++ .+|+|++.||+|++|+
T Consensus       278 ~D~~i~vwd~~~~------------~-~~~~~~H~~~V~~v~~sp----------------~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          278 EDCSLAVLDSSLS------------E-LFRSQAHRDFVRDATWSP----------------LNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             TTSCEEEECTTCC------------E-EEEECCCSSCEEEEEECS----------------SSTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCC------------c-EEEEcCCCCCEEEEEEeC----------------CCCeEEEEEcCCCeEEEEE
Confidence            9999999999875            2 345788999999999999                65 4788999999999999


Q ss_pred             CCCCCCccccc
Q psy988          393 NKTKPKHSSLP  403 (408)
Q Consensus       393 ~~~~~~~~~~~  403 (408)
                      +++.+....-|
T Consensus       329 v~~~~~~~p~p  339 (344)
T 4gqb_B          329 VPTEPLPAPGP  339 (344)
T ss_dssp             CCC--------
T ss_pred             CCCCCCCCCCC
Confidence            98876544433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.7e-50  Score=340.63  Aligned_cols=296  Identities=19%  Similarity=0.296  Sum_probs=245.3

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      ....+. |.+.|++++|+| ++++|++|+.||+|++||..+++..  ..+..|...|.+++|+|+|.+|++++.|+.+++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKE--HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--EEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcc--eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            445555 999999999999 9999999999999999999888766  577788899999999999999999999999999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec--
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH--  171 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  171 (408)
                      |++........  .........|...|.++.|+|++..|++++.|+.|++||+++++.+..+.+|...  +.+++++|  
T Consensus       133 ~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~--v~~~~~~~~~  208 (354)
T 2pbi_B          133 YPLTFDKNENM--AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD--VLCLDLAPSE  208 (354)
T ss_dssp             EECCCCTTCCS--GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECCCS
T ss_pred             EEEeccccccc--cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--eEEEEEEeCC
Confidence            99864321000  0000111246679999999999999999999999999999999998888887654  66777776  


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      ++++|++|+.||.|++||++++.            ....+..                                   |..
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~------------~~~~~~~-----------------------------------h~~  241 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQ------------CVQAFET-----------------------------------HES  241 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCC------------EEEEECC-----------------------------------CSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc------------EEEEecC-----------------------------------CCC
Confidence            57899999999999999987532            1222333                                   444


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  331 (408)
                      .|.+++|+|++.+|++++.|++|++||++.++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++     
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-----  316 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-----  316 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----
T ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-----
Confidence            555566666677789999999999999999888777766554456789999999999999999999999999876     


Q ss_pred             ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                             ..+..+.+|.+.|++++|+|                +|++|++|+.||+|++|+
T Consensus       317 -------~~~~~l~~h~~~v~~l~~sp----------------dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 -------SRVSILFGHENRVSTLRVSP----------------DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -------SEEEEECCCSSCEEEEEECT----------------TSSCEEEEETTSEEEEEC
T ss_pred             -------ceEEEEECCCCcEEEEEECC----------------CCCEEEEEcCCCCEEecC
Confidence                   55677889999999999999                999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.7e-49  Score=327.06  Aligned_cols=293  Identities=20%  Similarity=0.314  Sum_probs=241.7

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      ..+++. |.+.|++++|+| ++++|++++.||+|++||+.++...  ..+..|..+|.+++|+|++++|++|+.|+.|++
T Consensus         5 ~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcee--EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            345555 999999999999 9999999999999999999988765  688899999999999999999999999999999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEec-
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSH-  171 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-  171 (408)
                      ||+.+++....+.        .|...|.+++|+|++++|++++.|+.|++||++++. ....+.+|...  +.+++|+| 
T Consensus        82 wd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~--v~~v~~~p~  151 (304)
T 2ynn_A           82 FNYNTGEKVVDFE--------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPK  151 (304)
T ss_dssp             EETTTCCEEEEEE--------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC--EEEEEECTT
T ss_pred             EECCCCcEEEEEe--------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc--EEEEEECCC
Confidence            9999887654432        466799999999999999999999999999998774 44556666544  88999999 


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCc
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGR  251 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (408)
                      ++..|++|+.|+.|++||++......           .....+...+..+.++|                          
T Consensus       152 ~~~~l~sgs~D~~v~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~~~--------------------------  194 (304)
T 2ynn_A          152 DPSTFASGCLDRTVKVWSLGQSTPNF-----------TLTTGQERGVNYVDYYP--------------------------  194 (304)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSSCSE-----------EEECCCTTCEEEEEECC--------------------------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccc-----------eeccCCcCcEEEEEEEE--------------------------
Confidence            67899999999999999986532111           11112223344444333                          


Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccc
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  331 (408)
                             .+++.+|++++.|++|++||+++++++..+.+|..  .+.+++|+|++++|++|+.||.|++||+.+.     
T Consensus       195 -------~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-----  260 (304)
T 2ynn_A          195 -------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-----  260 (304)
T ss_dssp             -------STTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-----
T ss_pred             -------cCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----
Confidence                   23677899999999999999999999999998866  7889999999999999999999999999886     


Q ss_pred             ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc--EEEEEecCCeEEEEeCCC
Q psy988          332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY--VLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s~~~dg~v~iw~~~~  395 (408)
                             +++..+..|...+.+++|+|                ++.  ++++|+.| .+.+|++..
T Consensus       261 -------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          261 -------KVEKTLNVGLERSWCIATHP----------------TGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             -------CEEEEECCSSSSEEEEEECT----------------TCGGGCEEEEETT-EEEEEECC-
T ss_pred             -------ceeeeccCCCccEEEEEECC----------------CCCceEEEEecCC-ceEEEEecc
Confidence                   67778888999999999999                543  57777655 577887765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-49  Score=334.60  Aligned_cols=316  Identities=11%  Similarity=0.197  Sum_probs=237.4

Q ss_pred             eeEeEEE-eCC-ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeee-eecCCceeeEEEEEecCCCEEEEEecCCE
Q psy988           14 ECLCCFQ-HID-FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN-EVEGQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        14 ~~~~~~~-h~~-~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      +++..+. |.+ .|++++|+| ++++||+|+.|++|+|||+.++...... ...+|...|.+++|+|++++|++++.|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            4556665 887 999999999 9999999999999999999887644222 34689999999999999999999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc---ceeecCccccccceEE
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKA  167 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~  167 (408)
                      +++|++.........      ...+|...|.+++|+|++++|++++.|+.|++||++++..   ...+..|..  .+.++
T Consensus        85 v~iw~~~~~~~~~~~------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~  156 (345)
T 3fm0_A           85 TCIWKKNQDDFECVT------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHV  156 (345)
T ss_dssp             EEEEEECCC-EEEEE------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--CEEEE
T ss_pred             EEEEEccCCCeEEEE------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--CeEEE
Confidence            999998876432211      1235678999999999999999999999999999987643   344555544  48899


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      +|+|++++|++++.|+.|++||.+.+...          ....+                                   .
T Consensus       157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~----------~~~~~-----------------------------------~  191 (345)
T 3fm0_A          157 VWHPSQELLASASYDDTVKLYREEEDDWV----------CCATL-----------------------------------E  191 (345)
T ss_dssp             EECSSSSCEEEEETTSCEEEEEEETTEEE----------EEEEE-----------------------------------C
T ss_pred             EECCCCCEEEEEeCCCcEEEEEecCCCEE----------EEEEe-----------------------------------c
Confidence            99999999999999999999998643211          01112                                   2


Q ss_pred             CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---------------eeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          248 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---------------NLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                      .|...|.+++|+|++++|++++.|++|++||....               +++..+.+. +...|.+++|+|++.+|+++
T Consensus       192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~  270 (345)
T 3fm0_A          192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF-HSRTIYDIAWCQLTGALATA  270 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS-CSSCEEEEEECTTTCCEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC-CCCcEEEEEEecCCCEEEEE
Confidence            45556666677777888899999999999996322               223333331 23478999999999999999


Q ss_pred             cCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc-cEEEEEecCCeEEEE
Q psy988          313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLVSADFNGVIRVF  391 (408)
Q Consensus       313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iw  391 (408)
                      +.|+.|++|+.........   ...........+|...|++++|+|                ++ .+||||+.||+|++|
T Consensus       271 ~~d~~i~vw~~~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~~p----------------~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          271 CGDDAIRVFQEDPNSDPQQ---PTFSLTAHLHQAHSQDVNCVAWNP----------------KEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             ETTSCEEEEEECTTSCTTS---CCEEEEEEETTSSSSCEEEEEECS----------------SSTTEEEEEETTSCEEEE
T ss_pred             eCCCeEEEEEeCCCCCcce---eeEEEEeeecccccCcEeEeEEeC----------------CCceEEEEcCCCCcEEEE
Confidence            9999999999876432110   000011122357999999999999                66 599999999999999


Q ss_pred             eCCCCCCccccc
Q psy988          392 LNKTKPKHSSLP  403 (408)
Q Consensus       392 ~~~~~~~~~~~~  403 (408)
                      ++.+++.....|
T Consensus       332 ~~~~~~~~~~~~  343 (345)
T 3fm0_A          332 KYQRPEGLHHHH  343 (345)
T ss_dssp             EECC--------
T ss_pred             EecCCCCccccc
Confidence            999988765554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.7e-50  Score=339.85  Aligned_cols=309  Identities=11%  Similarity=0.143  Sum_probs=229.0

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC------CCcEEEEecCCCCce--eeeeecCCceeeEEEEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL------DGKLRLWNIPDKKVA--VWNEVEGQTKLITAANF   75 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~------dg~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~   75 (408)
                      ....|++....+   ..|...|++++||| ||++||+|+.      |+.|++|+..++...  ......+|...|.+++|
T Consensus        27 ~~~~w~~p~~~p---~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~  102 (357)
T 4g56_B           27 KGSAWGRPVTAP---ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW  102 (357)
T ss_dssp             ----------------CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE
T ss_pred             cccccCCCCCCc---ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE
Confidence            345565543222   23999999999999 9999999997      778999998776532  12344568889999999


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      +|++. +++++.||+|++||+.+++.......    ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       103 s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~----~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          103 VSEKG-ILVASDSGAVELWEILEKESLLVNKF----AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             ETTTE-EEEEETTSCEEEC--------CCCCE----EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cCCCC-EEEEECCCEEEEeeccccceeEEEee----ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            99986 55678899999999987654322111    12356789999999999999999999999999999999999888


Q ss_pred             cCccccccceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          156 KGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      ..|...  +.+++|++++. ++++++.||.|++||++++.....          .....+...+.+++|+|++       
T Consensus       178 ~~h~~~--v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~----------~~~~~~~~~v~~v~~sp~~-------  238 (357)
T 4g56_B          178 NAHSSE--VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR----------IDFCASDTIPTSVTWHPEK-------  238 (357)
T ss_dssp             CCCSSC--EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB----------CCCTTCCSCEEEEEECTTS-------
T ss_pred             cCCCCC--EEEEEEccCCCceeeeeccCCceEEEECCCCceeee----------eeeccccccccchhhhhcc-------
Confidence            887654  78999999875 788999999999999976432110          1122333444555554443       


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC-CEEEEec
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGS  313 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~  313 (408)
                                                 +.+|++|+.|+.|++||+++++++..+.++..  .|.+++|+|++ ++||+|+
T Consensus       239 ---------------------------~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          239 ---------------------------DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             ---------------------------TTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEE
T ss_pred             ---------------------------cceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEe
Confidence                                       34578899999999999999999999988766  78999999987 5899999


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      .|++|+|||++++            +++. ..+|.+.|++++|+|.               ++++|+|++.||+|++|++
T Consensus       290 ~D~~i~iwd~~~~------------~~~~-~~~H~~~V~~vafsP~---------------d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          290 EDCTVAVLDADFS------------EVFR-DLSHRDFVTGVAWSPL---------------DHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             TTSCEEEECTTSC------------EEEE-ECCCSSCEEEEEECSS---------------STTEEEEEETTSCEEEEEC
T ss_pred             CCCEEEEEECCCC------------cEeE-ECCCCCCEEEEEEeCC---------------CCCEEEEEcCCCeEEEEEC
Confidence            9999999999876            3333 4479999999999984               6889999999999999999


Q ss_pred             CCCC
Q psy988          394 KTKP  397 (408)
Q Consensus       394 ~~~~  397 (408)
                      ++..
T Consensus       342 ~~~~  345 (357)
T 4g56_B          342 PSEG  345 (357)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            7654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-48  Score=355.75  Aligned_cols=335  Identities=21%  Similarity=0.373  Sum_probs=282.3

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ||.|++||.. ++.+..+. |...|.+++|+| ++++|++++.|+.|++|+... +..  ..+.+|...|.+++|+|+++
T Consensus       201 d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~i~~w~~~~-~~~--~~~~~~~~~v~~v~~~~d~~  275 (577)
T 2ymu_A          201 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG-QLL--QTLTGHSSSVNGVAFRPDGQ  275 (577)
T ss_dssp             TSEEEEECTT-SCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTS-CEE--EEECCCSSCEEEEEECTTSS
T ss_pred             CCEEEEEeCC-CcEEEEEecCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCC-CEE--EEEecCCCCEEEEEEcCCCC
Confidence            7899999964 56666665 999999999999 999999999999999999654 333  57889999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      +|++++.|+.|++|+..... ...        ...|...|.+++|+|+++.+++++.|+.|++||+... .+..+..+..
T Consensus       276 ~l~~~~~d~~i~~w~~~~~~-~~~--------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~  345 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNGQL-LQT--------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSS  345 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCE-EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSS
T ss_pred             EEEEEeCCCEEEEEeCCCcE-EEE--------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCC
Confidence            99999999999999975432 111        1346679999999999999999999999999998654 3455555544


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC--
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK--  238 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--  238 (408)
                        .+.+++|+|++++|++++.||.|++||...             ..+..+..|...|.+++|+|+++++++...+..  
T Consensus       346 --~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          346 --SVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             --CEEEEEECTTSSEEEEEETTSEEEEEETTC-------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             --CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-------------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence              478899999999999999999999999642             334556788999999999999999987654422  


Q ss_pred             ----CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          239 ----SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       239 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                          .......+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|..  .+.+++|+|++++|++++.
T Consensus       411 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS--CEEEEEECTTSCEEEEEET
T ss_pred             EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeC
Confidence                33445566788999999999999999999999999999996 4677778877765  7899999999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      |+.|++|+...             +++..+.+|...|++++|+|                +|++||+++.||.|++||..
T Consensus       488 d~~i~iw~~~~-------------~~~~~~~~h~~~v~~l~~s~----------------dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          488 DKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAFSP----------------DGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TSEEEEEETTS-------------CEEEEEECCSSCEEEEEECT----------------TSSCEEEEETTSEEEEECTT
T ss_pred             CCEEEEEcCCC-------------CEEEEEeCCCCCEEEEEEcC----------------CCCEEEEEECcCEEEEEeCC
Confidence            99999999643             56778899999999999999                99999999999999999964


Q ss_pred             CCCCc
Q psy988          395 TKPKH  399 (408)
Q Consensus       395 ~~~~~  399 (408)
                       ++..
T Consensus       539 -~~~~  542 (577)
T 2ymu_A          539 -GQLL  542 (577)
T ss_dssp             -SCEE
T ss_pred             -CCEE
Confidence             4433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-47  Score=322.11  Aligned_cols=294  Identities=22%  Similarity=0.349  Sum_probs=248.5

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      .....+. |.+.|++++|+| ++++|++|+.||.|++|++.+++..  ..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccc--hhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            3344444 999999999999 9999999999999999999988766  67889999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +||+++.+....+.        .|...|.+++|+|++++|++++.|+.|++||+++++....+..+...  +.+++|+|+
T Consensus        91 vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~  160 (312)
T 4ery_A           91 IWDVSSGKCLKTLK--------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRD  160 (312)
T ss_dssp             EEETTTCCEEEEEE--------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTT
T ss_pred             EEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCC
Confidence            99999877554432        45678999999999999999999999999999999888888776544  788999999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      +++|++++.||.|++||++++.....            +                                  ...+...
T Consensus       161 ~~~l~~~~~d~~i~~wd~~~~~~~~~------------~----------------------------------~~~~~~~  194 (312)
T 4ery_A          161 GSLIVSSSYDGLCRIWDTASGQCLKT------------L----------------------------------IDDDNPP  194 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEE------------E----------------------------------CCSSCCC
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeE------------E----------------------------------eccCCCc
Confidence            99999999999999999875422110            0                                  0123345


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEecCCceEEEeeccccCcccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~  331 (408)
                      +..++|+|++++|++++.|+.|++||+++++.+..+.++..........++ +++++|++|+.||.|++||+.++     
T Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-----  269 (312)
T 4ery_A          195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----  269 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-----
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-----
Confidence            666777778888899999999999999999999998887654333334444 67899999999999999999886     


Q ss_pred             ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe--cCCeEEEEeCC
Q psy988          332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD--FNGVIRVFLNK  394 (408)
Q Consensus       332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~v~iw~~~  394 (408)
                             +.+..+.+|...|.+++|+|                ++++|++++  .|+.|++|+..
T Consensus       270 -------~~~~~~~~h~~~v~~~~~~p----------------~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          270 -------EIVQKLQGHTDVVISTACHP----------------TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             -------CEEEEECCCSSCEEEEEECS----------------SSSEEEEEECTTTCCEEEEECC
T ss_pred             -------hhhhhhhccCCcEEEEeecC----------------cCCceEEEEccCCccEEEecCC
Confidence                   57778899999999999999                899999987  69999999964

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-47  Score=329.50  Aligned_cols=313  Identities=18%  Similarity=0.313  Sum_probs=245.0

Q ss_pred             EEEEeccCCe-----eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc------------
Q psy988            5 VRLWHISRKE-----CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT------------   67 (408)
Q Consensus         5 i~vwd~~~~~-----~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~------------   67 (408)
                      ..+|+....+     +...++|.+.|.+++|+| ++++||+|+ ++.+++|++.+++..  ..+..|.            
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~--~~l~~~~~~~~~~~~~~~~  117 (393)
T 1erj_A           42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTS  117 (393)
T ss_dssp             EEEECTTSCCCEEEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEE--EEECC--------------
T ss_pred             EEEECCCCCcccCceeEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEE--EEecCcccccccccccccc
Confidence            3466655433     234557999999999999 999999986 689999999988765  3444332            


Q ss_pred             ------eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeE
Q psy988           68 ------KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRI  141 (408)
Q Consensus        68 ------~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  141 (408)
                            ..|.+++|+|+|++|++++.|+.|++||+.+.+....+        .+|...|.+++|+|++++|++++.|+.|
T Consensus       118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~l~s~s~d~~v  189 (393)
T 1erj_A          118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSGSGDRTV  189 (393)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--------ccCCCCEEEEEEcCCCCEEEEecCCCcE
Confidence                  24999999999999999999999999999987654332        3566799999999999999999999999


Q ss_pred             EEEEccCcccceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      ++||+++++....+..+   ..+.+++++| ++++|++++.|+.|++||++++.....            +..       
T Consensus       190 ~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~------------~~~-------  247 (393)
T 1erj_A          190 RIWDLRTGQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------------LDS-------  247 (393)
T ss_dssp             EEEETTTTEEEEEEECS---SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE------------EC--------
T ss_pred             EEEECCCCeeEEEEEcC---CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe------------ecc-------
Confidence            99999998877666543   3377899999 899999999999999999876432111            000       


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe------------eeeEE
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN------------LSCKY  288 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~  288 (408)
                                           .......|...|.+++|+|++++|++++.|+.|++||+++..            +...+
T Consensus       248 ---------------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~  306 (393)
T 1erj_A          248 ---------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY  306 (393)
T ss_dssp             --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred             ---------------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence                                 000112456677777788888889999999999999997642            34455


Q ss_pred             eeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988          289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                      .+|..  .+.+++|+|++++|++|+.|+.|++||+.++            +.+..+.+|...|.+++|++..        
T Consensus       307 ~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~------------~~~~~l~~h~~~v~~v~~~~~~--------  364 (393)
T 1erj_A          307 IGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSG------------NPLLMLQGHRNSVISVAVANGS--------  364 (393)
T ss_dssp             ECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECSSC--------
T ss_pred             ecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------eEEEEECCCCCCEEEEEecCCc--------
Confidence            55544  7889999999999999999999999999886            5677889999999999998721        


Q ss_pred             CCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          369 PDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                        .+++++++|+||+.||+|++|++...
T Consensus       365 --~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          365 --SLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             --TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             --CcCCCCCEEEEECCCCcEEECccccc
Confidence              23347899999999999999998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.4e-47  Score=319.49  Aligned_cols=300  Identities=15%  Similarity=0.232  Sum_probs=237.0

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---eeeeeecCCceeeEEEEEecCCCEEEEEecCCE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---AVWNEVEGQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      +...+. |.+.|++++|+|.++++|++|+.|++|++|++.....   .....+.+|...|.+++|+|++++|++++.|++
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            334454 9999999999994458999999999999999875432   234678899999999999999999999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      |++||+.+++....+.        +|...|.+++|+|++.+|++++.|+.|++||++. +.+..+.+|...  +.++.+.
T Consensus        89 v~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~--v~~~~~~  157 (319)
T 3frx_A           89 LRLWDVATGETYQRFV--------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDW--VSQVRVV  157 (319)
T ss_dssp             EEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSC--EEEEEEC
T ss_pred             EEEEECCCCCeeEEEc--------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCc--EEEEEEc
Confidence            9999999987654432        5667999999999999999999999999999974 555666666543  7788888


Q ss_pred             cC------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          171 HD------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       171 ~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      |.      +..|++++.|+.|++||+++...            ...+.                                
T Consensus       158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------~~~~~--------------------------------  193 (319)
T 3frx_A          158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQI------------EADFI--------------------------------  193 (319)
T ss_dssp             CC------CCEEEEEETTSCEEEEETTTTEE------------EEEEC--------------------------------
T ss_pred             cCCCCCCCccEEEEEeCCCEEEEEECCcchh------------heeec--------------------------------
Confidence            84      45899999999999999865321            11222                                


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                         .|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+   ..+.+++|+|++.+|++++.+ .+++|++.
T Consensus       194 ---~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          194 ---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             ---CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             ---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence               34455666666677778899999999999999999988888753   368899999999999988755 59999987


Q ss_pred             ccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          325 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      ........    ..........|...+.+++|+|                ||++|++|+.||.|++|++.++
T Consensus       267 ~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp----------------dg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          267 PQYLVDDL----RPEFAGYSKAAEPHAVSLAWSA----------------DGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TEEEEEEE----CCCCTTCCGGGCCCEEEEEECT----------------TSSEEEEEETTSCEEEEEEEEC
T ss_pred             cCeeeecc----CccccccccCcCcceeEEEECC----------------CCCEEEEeecCceEEEEEEeec
Confidence            64211100    0011111234667899999999                9999999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6e-47  Score=321.67  Aligned_cols=307  Identities=17%  Similarity=0.245  Sum_probs=231.8

Q ss_pred             eEeEEE-eCCceEEEEE-----cCCCCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeEEEEEecCCCEEE
Q psy988           15 CLCCFQ-HIDFVTAICF-----HPRDDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLITAANFCENGKFAV   83 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~-----sp~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~   83 (408)
                      +...+. |.+.|++++|     +|.++++|++|+.|++|++||+.+.+.     .....+.+|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            344555 9999999999     654789999999999999999976431     23357889999999999999999999


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS  163 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  163 (408)
                      +++.|++|++||+++++....+.        +|...|.+++|+|++++|++++.|+.|++||+.............+...
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFV--------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW  164 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEE--------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEc--------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence            99999999999999887544332        4667999999999999999999999999999974332222222233345


Q ss_pred             ceEEEEecCC----------CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988          164 QIKASFSHDG----------KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  233 (408)
Q Consensus       164 ~~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  233 (408)
                      +.+++|+|++          .+|++++.||.|++||....             ....+.                     
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~---------------------  210 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-------------IRYTFK---------------------  210 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE-------------EEEEEE---------------------
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc-------------eeEEEc---------------------
Confidence            7889999987          78999999999999994311             111222                     


Q ss_pred             cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-eeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                    .|...|.+++|+|++++|++++.|+.|++||+... .....+. +.  ..+.+++|+|++++++++
T Consensus       211 --------------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~--~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          211 --------------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AG--STINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             --------------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CS--SCEEEEEECSSSCEEEEE
T ss_pred             --------------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CC--CcEEEEEECCCCCEEEEE
Confidence                          34455666666777788899999999999999543 3433332 22  368899999999988765


Q ss_pred             cCCceEEEeeccccCcccc-ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988          313 SENQCIYIWKTHHDYAKFS-SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF  391 (408)
Q Consensus       313 ~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw  391 (408)
                       .|+.|++|++.+...... ..............+|...|.+++|+|                +|++|++|+.||.|++|
T Consensus       274 -~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----------------~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          274 -TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA----------------LGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             -ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS----------------SSCCEEEEETTSEEEEE
T ss_pred             -CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC----------------CCCeEEEecCCceEEEE
Confidence             577899999987532210 001000011122347888999999999                99999999999999999


Q ss_pred             eCCCCC
Q psy988          392 LNKTKP  397 (408)
Q Consensus       392 ~~~~~~  397 (408)
                      ++.++.
T Consensus       337 ~~~~g~  342 (343)
T 2xzm_R          337 SFETSA  342 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            987653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-46  Score=330.47  Aligned_cols=349  Identities=12%  Similarity=0.116  Sum_probs=268.4

Q ss_pred             eEEEEeccCCeeEeE-EEeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEec----CCCCce----eeeeecC--------
Q psy988            4 TVRLWHISRKECLCC-FQHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNI----PDKKVA----VWNEVEG--------   65 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~-~~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~----~~~~~~----~~~~~~~--------   65 (408)
                      .+.+|+++....... ..|.+.|++++|+| +++ +||+|+.||.|++|++    .+++..    ....+..        
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS  104 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence            356788766554433 34889999999999 888 9999999999999999    777620    0122332        


Q ss_pred             --CceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEE
Q psy988           66 --QTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRL  143 (408)
Q Consensus        66 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  143 (408)
                        |...|.+++|+|++++|++++.||.|++||. +++....+        ..|...|.+++|+|++++|++++.|+.|++
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVL--------NFHRAPIVSVKWNKDGTHIISMDVENVTIL  175 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE--------CCCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeeec--------cCCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence              6789999999999999999999999999994 33332222        245679999999999999999999999999


Q ss_pred             EEccCcccceeecCcccccc-------------ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccc
Q psy988          144 YDLRDLNLSCKYKGYVNVSS-------------QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       144 ~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      ||+++++....+..+.....             +.+++|++++ .+++++.+|.|++||+.++            .....
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~------------~~~~~  242 (425)
T 1r5m_A          176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK------------TPTGK  242 (425)
T ss_dssp             EETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS------------SCSEE
T ss_pred             EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC------------ceeee
Confidence            99999988877766544311             6678899875 5888999999999999753            33345


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCC-------CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPD-------KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  283 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  283 (408)
                      +..|...+.+++|+|+++++++...+.       ........+..+...+.+++|+|++ ++++++.|+.|++||+++++
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence            667889999999999999888765443       2344455667788999999999999 99999999999999999999


Q ss_pred             eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc--------ccCccccceeeeeecc--ceEE
Q psy988          284 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV--------RRDRNDFWEGIKAHNA--VVTC  353 (408)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~--~v~~  353 (408)
                      .+..+..+..  .+.+++|+|++++|++++.||.|++|++.+........        .....+.+..+.+|..  .|++
T Consensus       322 ~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  399 (425)
T 1r5m_A          322 LLALSIVDGV--PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD  399 (425)
T ss_dssp             EEEEEECTTC--CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred             EeEecccCCc--cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence            9988887655  78899999999999999999999999998763111100        0001126677888876  9999


Q ss_pred             EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ++|+|                ++++|++++.||.|++|+++
T Consensus       400 ~~~s~----------------~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          400 LSWNC----------------AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEECT----------------TSSEEEEEESSSCCEEEECC
T ss_pred             EEccC----------------CCceEEEEecCceEEEEeec
Confidence            99999                99999999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-46  Score=317.51  Aligned_cols=311  Identities=12%  Similarity=0.175  Sum_probs=222.7

Q ss_pred             cCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-cC-CceeeEEEEEecCCCEEEEEec
Q psy988           11 SRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-EG-QTKLITAANFCENGKFAVVGSY   87 (408)
Q Consensus        11 ~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~   87 (408)
                      .+.+++..+. |.+.|++++|+| +  +||+|+.|++|++|++..+.......+ .+ |...|.+++|+|++++|++++.
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             cccccceeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            3456677776 999999999998 5  999999999999999987654433445 44 9999999999999999999999


Q ss_pred             CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc----ccceeecCcccccc
Q psy988           88 DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL----NLSCKYKGYVNVSS  163 (408)
Q Consensus        88 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~  163 (408)
                      |++|++|+++...... ..........+|...|.+++|+|++++|++++.|+.|++||++..    +.+..+.+|..  .
T Consensus        79 D~~v~iw~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~  155 (330)
T 2hes_X           79 DSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--D  155 (330)
T ss_dssp             TSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--C
T ss_pred             CCcEEEEEcccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--c
Confidence            9999999986432100 000011112356789999999999999999999999999999532    34455666654  4


Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  243 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
                      +.+++|+|++++|++++.|+.|++||...+..          .++..+.+|...|.+++|+|++.               
T Consensus       156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~---------------  210 (330)
T 2hes_X          156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDW----------ECVAVLNGHEGTVWSSDFDKTEG---------------  210 (330)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------EEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCe----------eEEEEccCCCCcEEEEEecCCCC---------------
Confidence            88999999999999999999999999854311          12233445555555555554321               


Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--------eeeeEEeeccceeceeEEEEcCCCCEEEEecCC
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--------NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  315 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  315 (408)
                                        +..|++++.|++|++||+..+        .....+.. .+...|.+++|++++ +|++++.|
T Consensus       211 ------------------~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~d  270 (330)
T 2hes_X          211 ------------------VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGAD  270 (330)
T ss_dssp             ------------------SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETT
T ss_pred             ------------------eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCC
Confidence                              456899999999999998754        22333332 133478999999765 89999999


Q ss_pred             ceEEEeeccccCccccccccCccccceeeeeecc-ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA-VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      |.|++|+..++...         .......+|.. .|.+++|+|..              ++++||+|+.||+|++|++.
T Consensus       271 g~v~iw~~~~~~~~---------~~~~~~~~h~~~~v~~v~~~~~~--------------~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          271 GVLAVYEEVDGEWK---------VFAKRALCHGVYEINVVKWLELN--------------GKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             SCEEEEEEETTEEE---------EEEEESCTTTTSCEEEEEEC-------------------CCEEEEETTSEEEEEEC-
T ss_pred             CEEEEEEcCCCceE---------EEeccccccccceEEEEEEecCC--------------CceEEEEecCCCcEEEEEec
Confidence            99999998754110         11122356776 89999999821              36799999999999999987


Q ss_pred             C
Q psy988          395 T  395 (408)
Q Consensus       395 ~  395 (408)
                      .
T Consensus       328 ~  328 (330)
T 2hes_X          328 K  328 (330)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-46  Score=352.38  Aligned_cols=374  Identities=13%  Similarity=0.137  Sum_probs=268.2

Q ss_pred             CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .||+|+|||..+.+....+.|...|.+++|+|  +++|++++.|++|++||+.+++..  ..+. |...|++++|+|+++
T Consensus        37 ~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~--~~~~-~~~~V~~v~~sp~g~  111 (902)
T 2oaj_A           37 VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVL--TTVF-VPGKITSIDTDASLD  111 (902)
T ss_dssp             TTSEEEEECSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEE--EEEE-CSSCEEEEECCTTCS
T ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEE--EEEc-CCCCEEEEEECCCCC
Confidence            38999999999988887777999999999999  559999999999999999998766  4444 667899999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeec----cccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceee
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRST----RGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      +|++|+.||.|++||+++.+.. .......    .....|.+.|.+++|+|+ +..+++++.||.| +||+++++....+
T Consensus       112 ~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~  189 (902)
T 2oaj_A          112 WMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF  189 (902)
T ss_dssp             EEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE
Confidence            9999999999999999987653 2211110    223567789999999996 4688999999999 9999998887777


Q ss_pred             cCcc----------------ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeee-eccc-CCCccccc-cc---c
Q psy988          156 KGYV----------------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS-SVRR-DRNDFWEG-IK---A  213 (408)
Q Consensus       156 ~~~~----------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-~~~~~~~~-~~---~  213 (408)
                      ..+.                +...+.+++|+|+|++|++++.||.|++||++++..... .... ........ ..   .
T Consensus       190 ~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~  269 (902)
T 2oaj_A          190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSST  269 (902)
T ss_dssp             CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred             ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence            6541                124588999999999999999999999999987654321 0000 00000000 00   1


Q ss_pred             ccceEEEEEEe----CCcce-eeeecCCCCC-------------------------------------------------
Q psy988          214 HNAVVTCAVFA----PCPEL-IIAQMEPDKS-------------------------------------------------  239 (408)
Q Consensus       214 ~~~~v~~~~~~----~~~~~-~~~~~~~~~~-------------------------------------------------  239 (408)
                      +...|.+++|+    |++.. ++++..+...                                                 
T Consensus       270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  349 (902)
T 2oaj_A          270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL  349 (902)
T ss_dssp             CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred             ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence            34467777774    33322 2222111000                                                 


Q ss_pred             ------------C-----------Cceee---------------------------------------------------
Q psy988          240 ------------E-----------STGYV---------------------------------------------------  245 (408)
Q Consensus       240 ------------~-----------~~~~~---------------------------------------------------  245 (408)
                                  .           .....                                                   
T Consensus       350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~  429 (902)
T 2oaj_A          350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY  429 (902)
T ss_dssp             ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred             ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence                        0           00000                                                   


Q ss_pred             -ecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeee--eEEee-------ccceeceeEEEEcCCCCEEEEecCC
Q psy988          246 -LNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKG-------YVNVSSQIKASFSHDGKYIVSGSEN  315 (408)
Q Consensus       246 -~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~d  315 (408)
                       +.++...+..++|+|++++|++|+.|++|++||+.++...  ..+..       ..+...|.+++|+|||++||+|+.|
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence             0111223344677899999999999999999999887432  11210       0233479999999999999999999


Q ss_pred             ceEEEeeccccCcccc-------c---------cc-----------------cCccccceeeeeeccceEEEEecCCchh
Q psy988          316 QCIYIWKTHHDYAKFS-------S---------VR-----------------RDRNDFWEGIKAHNAVVTCAVFAPCPEL  362 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~-------~---------~~-----------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~  362 (408)
                      |+|+||++.++.....       .         +.                 +...+++..+.+|.+.|++++|+|    
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp----  585 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN----  585 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB----
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC----
Confidence            9999999987631000       0         00                 000134667888999999999999    


Q ss_pred             hhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          363 IIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       363 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                                  || +||+|+.||+|++||+.++..
T Consensus       586 ------------dG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          586 ------------IG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             ------------TS-EEEEEETTSEEEEEETTTTEE
T ss_pred             ------------Cc-EEEEEeCCCcEEEEECCCCeE
Confidence                        99 999999999999999877543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.4e-46  Score=366.86  Aligned_cols=367  Identities=18%  Similarity=0.292  Sum_probs=294.6

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      .||+|+|||+.+++++..+. |...|.+++|+|+ ++.++++|+.||.|++||+.+++..  ..+.+|...|.+++|+|+
T Consensus       677 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~h~~~v~~~~~sp~  754 (1249)
T 3sfz_A          677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCRFSPD  754 (1249)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE--EEECCCSSCEEEEEECSS
T ss_pred             CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh--heecCCCCCEEEEEEecC
Confidence            38999999999999999987 9999999999993 3458999999999999999998866  688899999999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeec-----------------------------------------------c
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST-----------------------------------------------R  111 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------------------------------------------~  111 (408)
                      ++++++++.||.|++||+.+.+..........                                               .
T Consensus       755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~  834 (1249)
T 3sfz_A          755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE  834 (1249)
T ss_dssp             TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred             CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence            99999999999999999988765444321110                                               0


Q ss_pred             ccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          112 GKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                      ....|...+.+++|+|+++.+++++.+|.|++||+.++.....+.+|...  +.+++|+|++++|++++.||.|++||+.
T Consensus       835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~--v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW--VHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc--eEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            01256778999999999999999999999999999999888888877654  8899999999999999999999999975


Q ss_pred             cceeee-------------------------------------------------------------------eecccCC
Q psy988          192 HDYAKF-------------------------------------------------------------------SSVRRDR  204 (408)
Q Consensus       192 ~~~~~~-------------------------------------------------------------------~~~~~~~  204 (408)
                      ......                                                                   .......
T Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~  992 (1249)
T 3sfz_A          913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN  992 (1249)
T ss_dssp             HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred             ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence            321000                                                                   0000011


Q ss_pred             CccccccccccceEEEEEEeCCcceeeeecCCCC------CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEE
Q psy988          205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  278 (408)
Q Consensus       205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  278 (408)
                      ......+.+|...|.+++|+|++++++++..+..      ..........+...+.+++++|++ .+++++.|+.|++||
T Consensus       993 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A          993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEE
T ss_pred             CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEE
Confidence            2233445567777888888888887776654332      111222344667778888888855 466777888888888


Q ss_pred             cCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          279 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      +.+++....+.+|..  .+.+++|+|++++|++++.||.|++||+.++            ..+..+.+|.+.|++++|+|
T Consensus      1072 ~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~------------~~~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQG--TVLSCAISSDATKFSSTSADKTAKIWSFDLL------------SPLHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp             TTTTCCCEEEECCSS--CCCCEEECSSSSSCEEECCSSCCCEECSSSS------------SCSBCCCCCSSCEEEEEECS
T ss_pred             CCCCceeEEEcccCC--cEEEEEECCCCCEEEEEcCCCcEEEEECCCc------------ceeeeeccCCCcEEEEEECC
Confidence            888888888877665  7889999999999999999999999999876            56677889999999999999


Q ss_pred             CchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          359 CPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       359 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                                      +|++|++++.||.|++||+.+++....+
T Consensus      1138 ----------------dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1138 ----------------DGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp             ----------------SSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred             ----------------CCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence                            9999999999999999999998866544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-47  Score=334.33  Aligned_cols=330  Identities=9%  Similarity=0.137  Sum_probs=256.5

Q ss_pred             CceEEEEeccCCe---eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC--CceeeeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISRKE---CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK--KVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~~~---~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      |+.|+|||+.+++   ++..+.|...|++++|+| ++++|++++.||.|++|++.+.  .......+.+|...|.+++|+
T Consensus        44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~  122 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN  122 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred             CCeEEEEEccCCCCCcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence            7899999999875   556667999999999999 9999999999999999999872  112336788999999999999


Q ss_pred             cC-CCEEEEEecCCEEEEEeccCCeeeEE-EEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccce
Q psy988           77 EN-GKFAVVGSYDGRCIFYTTDQLKYHTQ-IHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        77 ~~-~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      |+ +++|++++.||.|++||+.+.+.... ...........|...|.+++|+|+ +..|++++.||.|++||+++++...
T Consensus       123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence            98 89999999999999999988751000 001111223456779999999998 7889999999999999999998887


Q ss_pred             eecCccc----cccceEEEEecCC-CEEEEeecCc---eEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEe
Q psy988          154 KYKGYVN----VSSQIKASFSHDG-KYIVSGSENQ---CIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFA  224 (408)
Q Consensus       154 ~~~~~~~----~~~~~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~  224 (408)
                      .+..+..    ...+.+++|+|++ .++++++.|+   .|++||+++..           .....+. .|...+.     
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~v~-----  266 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----------TPLQTLNQGHQKGIL-----  266 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----------SCSBCCCSCCSSCEE-----
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----------CCcEEeecCccCcee-----
Confidence            7766531    3558899999997 6899999998   99999997531           1222333 4444444     


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  303 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s  303 (408)
                                                    +++|+| ++++|++++.|+.|++||+++++.+..+..|..  .+.+++|+
T Consensus       267 ------------------------------~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s  314 (416)
T 2pm9_A          267 ------------------------------SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFA  314 (416)
T ss_dssp             ------------------------------EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEEC
T ss_pred             ------------------------------EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEEC
Confidence                                          455555 566789999999999999999999999988765  78899999


Q ss_pred             CCC-CEEEEecCCceEEEeeccccCccccccc-----cCccc------------------cceeeeeeccceEEEEecCC
Q psy988          304 HDG-KYIVSGSENQCIYIWKTHHDYAKFSSVR-----RDRND------------------FWEGIKAHNAVVTCAVFAPC  359 (408)
Q Consensus       304 ~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~------------------~~~~~~~h~~~v~~~~~~~~  359 (408)
                      |++ ++|++++.||.|++|++...........     .....                  .+.....|..++.+++|+| 
T Consensus       315 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  393 (416)
T 2pm9_A          315 PEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-  393 (416)
T ss_dssp             TTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-
T ss_pred             CCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-
Confidence            999 8999999999999999987653322100     00000                  0011122667788999999 


Q ss_pred             chhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          360 PELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       360 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                                     +|++|++++.||.|+||++.+.
T Consensus       394 ---------------dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          394 ---------------GGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ---------------TTEEECBCTTSSCBCCBCCCCC
T ss_pred             ---------------CCeEEEEeCCCCeEEEEEeccC
Confidence                           9999999999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-46  Score=352.53  Aligned_cols=372  Identities=11%  Similarity=0.066  Sum_probs=264.5

Q ss_pred             CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee---------eeecCCceeeE
Q psy988            1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW---------NEVEGQTKLIT   71 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~---------~~~~~~~~~v~   71 (408)
                      .|++|+|||+.+++++..+.|.+.|++++|+| ++++|++|+.||.|++||+.+++....         ..+.+|...|.
T Consensus        77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence            38999999999999999999999999999999 999999999999999999998765321         23467999999


Q ss_pred             EEEEecC-CCEEEEEecCCEEEEEeccCCeeeEEEEEeec----------cccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           72 AANFCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST----------RGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        72 ~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      +++|+|+ +..+++++.||.| +||+++.+....+.....          .....|...|.+++|+|++.+|++++.||.
T Consensus       156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence            9999996 5789999999999 999998876544332100          011234568999999999999999999999


Q ss_pred             EEEEEccCccccee--ec---Ccc-----------ccccceEEEEec----CC-CEEEEeecC-----ceEEEeeeccc-
Q psy988          141 IRLYDLRDLNLSCK--YK---GYV-----------NVSSQIKASFSH----DG-KYIVSGSEN-----QCIYIWKTHHD-  193 (408)
Q Consensus       141 i~i~d~~~~~~~~~--~~---~~~-----------~~~~~~~~~~~~----~~-~~l~~~~~d-----g~i~i~d~~~~-  193 (408)
                      |++||+++++++..  +.   .+.           ....+.+++|++    ++ ..|++|+.+     ..+.+|++... 
T Consensus       235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~  314 (902)
T 2oaj_A          235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP  314 (902)
T ss_dssp             EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence            99999998876543  21   121           123477888854    33 456666554     26777763200 


Q ss_pred             -------------------eeeee---------e--cc---------c-------------------CCCccc-------
Q psy988          194 -------------------YAKFS---------S--VR---------R-------------------DRNDFW-------  208 (408)
Q Consensus       194 -------------------~~~~~---------~--~~---------~-------------------~~~~~~-------  208 (408)
                                         .....         .  ..         .                   ..+...       
T Consensus       315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~  394 (902)
T 2oaj_A          315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP  394 (902)
T ss_dssp             CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC
T ss_pred             CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC
Confidence                               00000         0  00         0                   000000       


Q ss_pred             ----------------------------------cccccccceEEEEEEeCCcceeeeecCCCC-------CCCce--ee
Q psy988          209 ----------------------------------EGIKAHNAVVTCAVFAPCPELIIAQMEPDK-------SESTG--YV  245 (408)
Q Consensus       209 ----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~  245 (408)
                                                        ..+.+|...+.+++|+|+++.++++..+..       .....  ..
T Consensus       395 ~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~  474 (902)
T 2oaj_A          395 QNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS  474 (902)
T ss_dssp             GGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred             CcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence                                              011223333344556788888887644432       11100  11


Q ss_pred             e---------cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---------------------------------
Q psy988          246 L---------NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN---------------------------------  283 (408)
Q Consensus       246 ~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------------  283 (408)
                      +         ..|...|.+++|+|++++||+|+.||+|+|||+.+++                                 
T Consensus       475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (902)
T 2oaj_A          475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR  554 (902)
T ss_dssp             EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred             EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence            1         1677899999999999999999999999999997652                                 


Q ss_pred             ------------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee-eeccc
Q psy988          284 ------------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAV  350 (408)
Q Consensus       284 ------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~  350 (408)
                                  ++..+.+|..  .|++++||||| +||+|+.|++|++||+.+......       ..+..+. +|.+.
T Consensus       555 ~~~~~~~~~g~~~~~~l~~h~~--~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~-------~~~~~~~~gh~~~  624 (902)
T 2oaj_A          555 DRAPTGVRQGFMPSTAVHANKG--KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM-------ENIREISGAQSAC  624 (902)
T ss_dssp             GGCCTTCSEEEEEEEEECCCSC--SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE-------EEGGGTCSSCCCC
T ss_pred             ccCCCCCCCccceeEEEEcCCC--cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE-------eehhHhccccccc
Confidence                        3455666544  89999999999 999999999999999876421100       0113344 89999


Q ss_pred             eEEEEec-----CCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC---CCCC
Q psy988          351 VTCAVFA-----PCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN---KTKP  397 (408)
Q Consensus       351 v~~~~~~-----~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~---~~~~  397 (408)
                      |++++|+     |||.             ++++|++|+.||+|++|++   .+++
T Consensus       625 V~sv~Fs~~~~~~Dg~-------------~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          625 VTCIEFVIMEYGDDGY-------------SSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEEEEEEEECTTSSS-------------EEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             eEEEEEEEEecCCCCC-------------cceEEEEEecCCcEEEEEEecCCCCc
Confidence            9999999     8321             3589999999999999999   5555

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=309.48  Aligned_cols=262  Identities=17%  Similarity=0.280  Sum_probs=225.3

Q ss_pred             CCceEEEEeccCCeeEe--EEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLC--CFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~--~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .|++|+|||+.+++...  .+. |...|.+++|+| ++.++++++.|++|++||+.+++..  ..+..|...+.+++|+|
T Consensus        56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~~~~~~~~~~~~sp  132 (321)
T 3ow8_A           56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQI--KSIDAGPVDAWTLAFSP  132 (321)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE--EEEECCTTCCCCEEECT
T ss_pred             CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEE--EEEeCCCccEEEEEECC
Confidence            48999999998876543  344 999999999999 9999999999999999999998766  67788888999999999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ++++|++++.||.|++|++++.+......        .+...+.+++|+|++++|++++.||.|++||+++++.+..+.+
T Consensus       133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~  204 (321)
T 3ow8_A          133 DSQYLATGTHVGKVNIFGVESGKKEYSLD--------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG  204 (321)
T ss_dssp             TSSEEEEECTTSEEEEEETTTCSEEEEEE--------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCceeEEec--------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence            99999999999999999999877644332        3446899999999999999999999999999999998888887


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |...  +.+++|+|++++|++++.|+.|++||++...            ....+.                         
T Consensus       205 h~~~--v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~-------------------------  245 (321)
T 3ow8_A          205 HAMP--IRSLTFSPDSQLLVTASDDGYIKIYDVQHAN------------LAGTLS-------------------------  245 (321)
T ss_dssp             CSSC--CCEEEECTTSCEEEEECTTSCEEEEETTTCC------------EEEEEC-------------------------
T ss_pred             cCCc--eeEEEEcCCCCEEEEEcCCCeEEEEECCCcc------------eeEEEc-------------------------
Confidence            7654  7789999999999999999999999986532            112233                         


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                .|...|.+++|+|++++|++++.|++|++||+++++++..+.+|..  .|.+++|+|++++|++++.||.
T Consensus       246 ----------~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          246 ----------GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             ----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCC
T ss_pred             ----------CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCe
Confidence                      3445556666666777789999999999999999999999988765  7899999999999999999999


Q ss_pred             EEEeecc
Q psy988          318 IYIWKTH  324 (408)
Q Consensus       318 i~iw~~~  324 (408)
                      |++||..
T Consensus       314 i~vwd~p  320 (321)
T 3ow8_A          314 IHIYDCP  320 (321)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.2e-46  Score=322.62  Aligned_cols=261  Identities=18%  Similarity=0.339  Sum_probs=227.2

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|+|||+.+++....+. |.+.|++++|+| ++++|++|+.|++|++||+.+++..  ..+.+|...|.+++|+|++
T Consensus       128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~  204 (410)
T 1vyh_C          128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNG  204 (410)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSS
T ss_pred             CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCC
Confidence            38999999999999998887 999999999999 9999999999999999999888765  6889999999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ++|++++.|++|++||++++.....+.        .|...|.++.++|++.+|++++.|+.|++||+++++....+..|.
T Consensus       205 ~~l~s~s~D~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~  276 (410)
T 1vyh_C          205 DHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR  276 (410)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence            999999999999999999887654432        456789999999999999999999999999999998888887776


Q ss_pred             ccccceEEEEecC--------------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          160 NVSSQIKASFSHD--------------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       160 ~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      ..  +.+++|+|+                    +.+|++|+.|+.|++||++++..            +..+.+|     
T Consensus       277 ~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~------------~~~~~~h-----  337 (410)
T 1vyh_C          277 HV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC------------LMTLVGH-----  337 (410)
T ss_dssp             SC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE------------EEEEECC-----
T ss_pred             ce--EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce------------EEEEECC-----
Confidence            54  778999986                    67899999999999999975422            2223334     


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                                                    ...|.+++|+|++++|++++.|+.|++||+.+++++..+.+|..  .|.+
T Consensus       338 ------------------------------~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~  385 (410)
T 1vyh_C          338 ------------------------------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS  385 (410)
T ss_dssp             ------------------------------SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred             ------------------------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEE
Confidence                                          44455555666677789999999999999999999999988766  7999


Q ss_pred             EEEcCCCCEEEEecCCceEEEeec
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      ++|+|++.+|++|+.||.|++|++
T Consensus       386 l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7e-46  Score=366.10  Aligned_cols=364  Identities=18%  Similarity=0.241  Sum_probs=287.8

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--C
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--N   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~   78 (408)
                      ||+|+|||+.+++.+..+. |.+.|.+++|+| ++++|++++.||.|++||+.+++..  ..+.+|...|.+++|+|  +
T Consensus       636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceE--EEEcCCCCcEEEEEEecCCC
Confidence            8999999999999999887 999999999999 9999999999999999999998876  68889999999999999  5


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      +.++++++.||.|++||+.+++.....        .+|...|.+++|+|+++.+++++.||.|++||+++++....+...
T Consensus       713 ~~~l~sg~~d~~v~vwd~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  784 (1249)
T 3sfz_A          713 HLLLATGSNDFFLKLWDLNQKECRNTM--------FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK  784 (1249)
T ss_dssp             CCEEEEEETTSCEEEEETTSSSEEEEE--------CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred             ceEEEEEeCCCeEEEEECCCcchhhee--------cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence            568999999999999999988754433        246679999999999999999999999999999876544332110


Q ss_pred             -----------------------------------------------------cccccceEEEEecCCCEEEEeecCceE
Q psy988          159 -----------------------------------------------------VNVSSQIKASFSHDGKYIVSGSENQCI  185 (408)
Q Consensus       159 -----------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i  185 (408)
                                                                           .+...+.+++|+|+++++++++.||.|
T Consensus       785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v  864 (1249)
T 3sfz_A          785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV  864 (1249)
T ss_dssp             CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCE
T ss_pred             ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence                                                                 122346677888888888888888888


Q ss_pred             EEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC------------------------
Q psy988          186 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES------------------------  241 (408)
Q Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------------------------  241 (408)
                      ++||+.++.            ....+.+|...|.+++|+|+++.+++...+.....                        
T Consensus       865 ~vwd~~~~~------------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  932 (1249)
T 3sfz_A          865 ELWNIDSRL------------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE  932 (1249)
T ss_dssp             EEEETTTTE------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred             EEEEcCCCc------------eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence            888886543            33556789999999999999999887754432100                        


Q ss_pred             --------------------ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEE
Q psy988          242 --------------------TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       242 --------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  301 (408)
                                          ...........+.+++++|+++++++|+.+|.|++||+.+++....+.+|..  .|.+++
T Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~--~v~~l~ 1010 (1249)
T 3sfz_A          933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK--AVRHIQ 1010 (1249)
T ss_dssp             TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS--CCCCEE
T ss_pred             CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC--ceEEEE
Confidence                                0001112345689999999999999999999999999999998888887765  788999


Q ss_pred             EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC-----------
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD-----------  370 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-----------  370 (408)
                      |+|+|++|++++.||.|++|++.++..             ..+.+|...|.+++|+|++.+++.+....           
T Consensus      1011 ~s~dg~~l~s~~~dg~i~vwd~~~~~~-------------~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1011 FTADGKTLISSSEDSVIQVWNWQTGDY-------------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             ECSSSSCEEEECSSSBEEEEETTTTEE-------------ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCce-------------EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence            999999999999999999999987522             12334555566666665444332221110           


Q ss_pred             --------------CCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          371 --------------KSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       371 --------------~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                                    ++++++++|++++.||.|++|++.+++....+.
T Consensus      1078 ~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred             eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence                          345599999999999999999998877655543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.9e-45  Score=316.80  Aligned_cols=303  Identities=17%  Similarity=0.179  Sum_probs=241.6

Q ss_pred             EeccCCeeEeEEE-eCCceEEEEEcCCCC-CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEE
Q psy988            8 WHISRKECLCCFQ-HIDFVTAICFHPRDD-RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVV   84 (408)
Q Consensus         8 wd~~~~~~~~~~~-h~~~v~~~~~sp~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~   84 (408)
                      |++.+.+....+. |.+.|++++|+| ++ ++|++|+.||.|++||+.+++........+|...|.+++|+| ++++|++
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  136 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFV  136 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence            4455667777776 999999999999 77 999999999999999999888775444557999999999999 7899999


Q ss_pred             EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccc
Q psy988           85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ  164 (408)
Q Consensus        85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  164 (408)
                      ++.|+.|++||+.+...      ........+...|.+++|+|++++|++++.|+.|++||+ +++....+..|..  .+
T Consensus       137 ~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~--~v  207 (383)
T 3ei3_B          137 SSIRGATTLRDFSGSVI------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA--KV  207 (383)
T ss_dssp             EETTTEEEEEETTSCEE------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS--CE
T ss_pred             EeCCCEEEEEECCCCce------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC--cE
Confidence            99999999999986332      122223345578999999999999999999999999999 4666777776654  48


Q ss_pred             eEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988          165 IKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  243 (408)
Q Consensus       165 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
                      .+++|+|+++ +|++++.|+.|++||+++....        ......+                                
T Consensus       208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~--------------------------------  247 (383)
T 3ei3_B          208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--------NSYIAEM--------------------------------  247 (383)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------TCEEEEE--------------------------------
T ss_pred             EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------cceEEEe--------------------------------
Confidence            8999999999 8999999999999999752110        0011111                                


Q ss_pred             eeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce---------------eceeEEEEcCCCC
Q psy988          244 YVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---------------SSQIKASFSHDGK  307 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------~~v~~~~~s~~~~  307 (408)
                          .+...|.+++|+| ++++|++++.|+.|++||+++++....+..+...               ..+..++|+|+++
T Consensus       248 ----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~  323 (383)
T 3ei3_B          248 ----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ  323 (383)
T ss_dssp             ----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred             ----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence                3445666677777 7788899999999999999998887777755321               2344567777777


Q ss_pred             EEEEecCCceEEEeeccccCccccccccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988          308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                      +  +|+.||.|++||+.++            +.+..+.+  |...+..++|+|                ++++|++|+ |
T Consensus       324 ~--s~s~d~~i~iwd~~~~------------~~~~~l~~~~~~~~~~~~~~s~----------------~g~~l~s~s-d  372 (383)
T 3ei3_B          324 L--LLNDKRTIDIYDANSG------------GLVHQLRDPNAAGIISLNKFSP----------------TGDVLASGM-G  372 (383)
T ss_dssp             T--CTTCCCCEEEEETTTC------------CEEEEECBTTBCSCCCEEEECT----------------TSSEEEEEE-T
T ss_pred             c--ccCCCCeEEEEecCCC------------ceeeeecCCCCCceEEEEEEec----------------CccEEEEec-C
Confidence            7  7889999999999887            55666766  567788889999                999999997 9


Q ss_pred             CeEEEEeCCC
Q psy988          386 GVIRVFLNKT  395 (408)
Q Consensus       386 g~v~iw~~~~  395 (408)
                      |.|++|++++
T Consensus       373 ~~i~iw~~~~  382 (383)
T 3ei3_B          373 FNILIWNRED  382 (383)
T ss_dssp             TEEEEEECC-
T ss_pred             CcEEEEecCC
Confidence            9999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-44  Score=308.12  Aligned_cols=305  Identities=15%  Similarity=0.219  Sum_probs=232.6

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---eeeeeecCCceeeEEEEEecCCCEEEEEecCC
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---AVWNEVEGQTKLITAANFCENGKFAVVGSYDG   89 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   89 (408)
                      ++..++. |.+.|++|+|+|+++++||||+.||+|+|||+.+.+.   .....+.+|...|.+++|+|++++|++++.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            4445565 9999999999995578999999999999999987553   23467889999999999999999999999999


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce-eecCccccccceEEE
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC-KYKGYVNVSSQIKAS  168 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~  168 (408)
                      .|++|+...........        .+...+..+.++++++.|++++.|+.+++||+....... ....+.  ..+..++
T Consensus       109 ~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~--~~v~~~~  178 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFV--------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS--EWVSCVR  178 (340)
T ss_dssp             EEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCS--SCEEEEE
T ss_pred             cceEEeecccceeeeec--------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecccc--CcccceE
Confidence            99999999876554433        233578889999999999999999999999987654332 223333  4466778


Q ss_pred             EecCC--CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeee
Q psy988          169 FSHDG--KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL  246 (408)
Q Consensus       169 ~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
                      |++++  .++++++.|+.|++||+++...            ...+.+                                 
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~------------~~~~~~---------------------------------  213 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANCKL------------KTNHIG---------------------------------  213 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTTEE------------EEEECC---------------------------------
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCCce------------eeEecC---------------------------------
Confidence            87754  5688999999999999875422            122333                                 


Q ss_pred             cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          247 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                        |...|.+++|+|++++|++++.|+.|++||+++.+.+..+..+   ..+.+++|+|++.++ +++.|+.|++||++..
T Consensus       214 --h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          214 --HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALCFSPNRYWL-CAATGPSIKIWDLEGK  287 (340)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCEEEEEECSSSSEE-EEEETTEEEEEETTTT
T ss_pred             --CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceEEeeecCCCCcee-eccCCCEEEEEECCCC
Confidence              4445555666666777899999999999999999988887754   367899999987655 4557999999999865


Q ss_pred             CccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          327 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      ......   ..........+|...|++++|+|                +|++|++|+.||.|+|||+.+|++
T Consensus       288 ~~~~~~---~~~~~~~~~~~h~~~v~~l~~s~----------------dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          288 IIVDEL---KQEVISTSSKAEPPQCTSLAWSA----------------DGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             EEEEEE---CCC-------CCCCCEEEEEECT----------------TSSEEEEEETTSCEEEEEEEC---
T ss_pred             eEEEec---cccceeeeccCCCCCEEEEEECC----------------CCCEEEEEeCCCEEEEEeCCCcCC
Confidence            321110   01112233457899999999999                999999999999999999998863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-44  Score=310.90  Aligned_cols=293  Identities=17%  Similarity=0.253  Sum_probs=246.4

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +|.+.|++++|+| ++++|++++.||.|++||+.+++..  ..+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus        30 ~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           30 GHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             CCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            4999999999999 9999999999999999999988766  688899999999999999999999999999999999988


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCcccc-----------eeecCcccccc
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLS-----------CKYKGYVNVSS  163 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-----------~~~~~~~~~~~  163 (408)
                      +......         +...+.+++|+|+++.+++++.+     +.|++||++.....           ..+..+.....
T Consensus       107 ~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          107 QCVATWK---------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             CEEEEEE---------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             cEEEEee---------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            7655443         34589999999999999999998     99999999876532           22333333336


Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCce
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  243 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
                      +.+++|+|++++|++++.||.|++||+++..           .....+.                               
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-------------------------------  215 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSID-------------------------------  215 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEE-------------------------------
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEe-------------------------------
Confidence            8899999999999999999999999986521           1112222                               


Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc-------
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-------  316 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------  316 (408)
                          .+...|.+++|+|++++|++++.|+.|++||+++++....+..   ...+..++|+|+++++++++.++       
T Consensus       216 ----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  288 (369)
T 3zwl_B          216 ----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTT  288 (369)
T ss_dssp             ----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECCC-------
T ss_pred             ----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEE
Confidence                3444566666667777889999999999999999998888773   34688999999999999999888       


Q ss_pred             -------eEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEE
Q psy988          317 -------CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR  389 (408)
Q Consensus       317 -------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  389 (408)
                             .+++||..++            +.+..+.+|...|++++|+|                ++++|++++.||.|+
T Consensus       289 ~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~~~~l~s~~~dg~v~  340 (369)
T 3zwl_B          289 SANEGKFEARFYHKIFE------------EEIGRVQGHFGPLNTVAISP----------------QGTSYASGGEDGFIR  340 (369)
T ss_dssp             ------CEEEEEETTTC------------CEEEEEECCSSCEEEEEECT----------------TSSEEEEEETTSEEE
T ss_pred             ecCCCcceeEEEecCCC------------cchhheecccCcEEEEEECC----------------CCCEEEEEcCCCeEE
Confidence                   8999999876            56778889999999999999                999999999999999


Q ss_pred             EEeCCCCCCccc
Q psy988          390 VFLNKTKPKHSS  401 (408)
Q Consensus       390 iw~~~~~~~~~~  401 (408)
                      +|++..+.....
T Consensus       341 iw~~~~~~~~~~  352 (369)
T 3zwl_B          341 LHHFEKSYFDFK  352 (369)
T ss_dssp             EEEECHHHHTCC
T ss_pred             EEECccccchhH
Confidence            999987654333

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-44  Score=332.60  Aligned_cols=351  Identities=15%  Similarity=0.159  Sum_probs=273.3

Q ss_pred             CceEEEEeccCCeeEeEEE-eCC---ceEEEEEcCCC-CCEEEEEeCCCcEEEEecCCCCceeeeee-c---CCceeeEE
Q psy988            2 DKTVRLWHISRKECLCCFQ-HID---FVTAICFHPRD-DRYFLSGSLDGKLRLWNIPDKKVAVWNEV-E---GQTKLITA   72 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~---~v~~~~~sp~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~---~~~~~v~~   72 (408)
                      |+.|++||+.+++.+..+. |.+   .|.+++|+| + +++|++++.||.|++||+.+++..  ..+ .   .|...|.+
T Consensus       182 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~v~~  258 (615)
T 1pgu_A          182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFL--KYIEDDQEPVQGGIFA  258 (615)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEE--EECCBTTBCCCSCEEE
T ss_pred             CCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEe--EEecccccccCCceEE
Confidence            7999999999999999887 988   999999999 8 999999999999999999988866  455 5   89999999


Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      ++|+ ++++|++++.||.|++||+++.+.........    ......+.++.|. +++.+++++.+|.|++||+++++..
T Consensus       259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence            9999 99999999999999999999887655544221    1223467888885 8999999999999999999988877


Q ss_pred             eeecCcccc-------------------------------ccceEEEEecCCCEEEEeecCceEEEeeeccceeee----
Q psy988          153 CKYKGYVNV-------------------------------SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF----  197 (408)
Q Consensus       153 ~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----  197 (408)
                      ..+..|...                               ..+.+++| ++++.|++++.|+.+++||+.......    
T Consensus       333 ~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  411 (615)
T 1pgu_A          333 KTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKV  411 (615)
T ss_dssp             EEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred             EEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence            777665432                               22334444 335667777777777777765432100    


Q ss_pred             ------------------eecccCCCccccccccccceEEEEEEeCCcceeeeecC-CCC-------CCCce-eeecCCC
Q psy988          198 ------------------SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME-PDK-------SESTG-YVLNATG  250 (408)
Q Consensus       198 ------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~-------~~~~~-~~~~~~~  250 (408)
                                        ..........+..+ .+...+.+++|+  ++.+++... +..       ..... ..+..+.
T Consensus       412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  488 (615)
T 1pgu_A          412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR  488 (615)
T ss_dssp             EEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred             EEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCcc
Confidence                              00000011112222 256677788887  666666554 322       01111 4456788


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee-ccceeceeEEEEcC----------CCCEEEEecCCceEE
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSH----------DGKYIVSGSENQCIY  319 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~  319 (408)
                      ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+ |..  .+.+++|+|          ++++|++++.||.|+
T Consensus       489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS--KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  566 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS--CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCC--ceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence            8999999999999999999999999999999999887766 544  899999999          999999999999999


Q ss_pred             EeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          320 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       320 iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      +|++.++.           +.+..+.+|...|++++|+|                +++ |++++.||.|++|++.+
T Consensus       567 iw~~~~~~-----------~~~~~~~~h~~~v~~l~~s~----------------~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          567 IYSVKRPM-----------KIIKALNAHKDGVNNLLWET----------------PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEESSCTT-----------CCEEETTSSTTCEEEEEEEE----------------TTE-EEEEETTSCEEEEEEC-
T ss_pred             EEECCCCc-----------eechhhhcCccceEEEEEcC----------------CCC-eEEecCCceEEEEeeec
Confidence            99998752           35666788999999999999                899 99999999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-44  Score=305.24  Aligned_cols=263  Identities=17%  Similarity=0.299  Sum_probs=225.9

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--ceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK--VAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .||+|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.|++|++.+..  ......+.+|...|.++.|++
T Consensus        75 ~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  153 (340)
T 1got_B           75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD  153 (340)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred             CCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence            38999999999999998887 999999999999 99999999999999999998754  233467889999999999998


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ++. +++++.|+.|++||+++++....+        .+|...|.+++|+|+++++++++.|+.|++||+++++....+.+
T Consensus       154 ~~~-l~s~s~d~~i~~wd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          154 DNQ-IVTSSGDTTCALWDIETGQQTTTF--------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             TTE-EEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             CCc-EEEEECCCcEEEEECCCCcEEEEE--------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence            875 889999999999999988754433        24667999999999999999999999999999999998888887


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |...  +.+++|+|++++|++++.||.|++||++.+.....            +. +                       
T Consensus       225 h~~~--v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~------------~~-~-----------------------  266 (340)
T 1got_B          225 HESD--INAICFFPNGNAFATGSDDATCRLFDLRADQELMT------------YS-H-----------------------  266 (340)
T ss_dssp             CSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------EC-C-----------------------
T ss_pred             CcCC--EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE------------Ec-c-----------------------
Confidence            7654  88999999999999999999999999975432110            00 0                       


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                               ..+...|.+++|+|++++|++|+.|+.|++||+.+++....+.+|..  .|.+++|+|+|++|++|+.||.
T Consensus       267 ---------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          267 ---------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             ---------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred             ---------CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCcc
Confidence                     01223567777888888899999999999999999999999988766  8899999999999999999999


Q ss_pred             EEEee
Q psy988          318 IYIWK  322 (408)
Q Consensus       318 i~iw~  322 (408)
                      |++||
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.4e-45  Score=320.95  Aligned_cols=297  Identities=15%  Similarity=0.188  Sum_probs=230.4

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccC
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      .|...|++|+|+|.++++||+|+.||.|+|||+.+++......+.+|.+.|++++|+| ++++|++++.||+|++||+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            3899999999999777899999999999999999887665567789999999999998 689999999999999999987


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC-EEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIV  177 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  177 (408)
                      ......      .....+...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+|..  .+.+++|+|++. +|+
T Consensus       197 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~--~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          197 NILRVF------ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKK--KVTHVALNPCCDWFLA  267 (435)
T ss_dssp             CEEEEE------ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSS--CEEEEEECTTCSSEEE
T ss_pred             CceeEE------eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccc--eEEeeeecCCCceEEE
Confidence            543221      12223345688999999999999999999999999974 45566666654  488999999886 678


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +++.|+.|++||+++.....         .+                                   .....|...|.+++
T Consensus       268 s~s~d~~v~iwd~~~~~~~~---------~~-----------------------------------~~~~~h~~~v~~~~  303 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKA---------SF-----------------------------------LYSLPHRHPVNAAC  303 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSS---------CC-----------------------------------SBCCBCSSCEEECC
T ss_pred             EecCcceeeEEecccccccc---------eE-----------------------------------EEeeecccccccee
Confidence            89999999999986532110         00                                   11124566777888


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce----eceeEEEEcCCCCEEEEec------------CCceEEEe
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV----SSQIKASFSHDGKYIVSGS------------ENQCIYIW  321 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~------------~dg~i~iw  321 (408)
                      |+|++++|++++.|+.|++||+.+++....+..|...    ..+..+.|+|++.+++++.            .++.|++|
T Consensus       304 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw  383 (435)
T 4e54_B          304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF  383 (435)
T ss_dssp             BCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred             ECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence            8888899999999999999999999887777655431    1234456777777766653            34579999


Q ss_pred             eccccCccccccccCccccceee-eeeccceEEE-EecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          322 KTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCA-VFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      |..++            +.+..+ .+|...|.++ +|+|                +|++|++|+ |+.|+||++++++.
T Consensus       384 d~~~g------------~~~~~l~~~~~~~v~s~~~fsp----------------dg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          384 DGNSG------------KMMCQLYDPESSGISSLNEFNP----------------MGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CSSSC------------CEEEEECCSSCCCCCCEEEECT----------------TSSCEEEEC-SSEEEECCCC----
T ss_pred             ECCCC------------cEEEEEeCCCCCcEEEEEEECC----------------CCCEEEEEc-CCcEEEEECCcCee
Confidence            99887            444444 4678888887 6999                999999876 88999999998864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.3e-45  Score=315.36  Aligned_cols=309  Identities=11%  Similarity=0.082  Sum_probs=239.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----ceeeeeecCCceeeEEEEEecC----C---CEEEEEecCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK----VAVWNEVEGQTKLITAANFCEN----G---KFAVVGSYDG   89 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~dg   89 (408)
                      |.+.|++++|+|   ++|++|+.||.|++|++.+++    ......+.+|...|.+++|+|+    +   ++|++++.||
T Consensus        15 h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg   91 (397)
T 1sq9_A           15 HDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   91 (397)
T ss_dssp             SSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             hhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence            999999999987   689999999999999999887    2223678899999999999999    9   9999999999


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccC--CCCeEEEeeC----CCCCe-EEEeeCCCeEEEEEccC------cccce---
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNAT--GRKISGIEPM----PGEDK-ILVTSNDSRIRLYDLRD------LNLSC---  153 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------~~~~~---  153 (408)
                      .|++|++.+.+............+..+  ...|.+++|+    |+++. |++++.||.|++||+++      ++.+.   
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence            999999987664211112222222222  4789999999    99999 99999999999999998      76666   


Q ss_pred             --eecC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          154 --KYKG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       154 --~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                        .+..     ..+...+.+++|+|++ +|++++.||.|++||+++....            ..+..             
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~------------~~~~~-------------  225 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL------------YNFES-------------  225 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE------------EEEEC-------------
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee------------EEEec-------------
Confidence              5543     3334558899999999 9999999999999999753221            11222             


Q ss_pred             cceeeeecCCCCCCCceeeecCC---CceeeeeccCCCCCeEEEecCC---CeEEEEEcCCCeeeeEEee----------
Q psy988          227 PELIIAQMEPDKSESTGYVLNAT---GRKISGIEPMPGEDKILVTSND---SRIRLYDLRDLNLSCKYKG----------  290 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~----------  290 (408)
                                         ...|   ...+.+++|+|++++|++++.|   +.|++||+++++.+..+..          
T Consensus       226 -------------------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T 1sq9_A          226 -------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG  286 (397)
T ss_dssp             -------------------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred             -------------------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence                               0013   4556666777777888999999   9999999999999988887          


Q ss_pred             ---ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee------ee--------------
Q psy988          291 ---YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK------AH--------------  347 (408)
Q Consensus       291 ---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~------~h--------------  347 (408)
                         |..  .+.+++|+|++++|++++.||.|++||+.++            +.+..+.      +|              
T Consensus       287 ~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  352 (397)
T 1sq9_A          287 EFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSL  352 (397)
T ss_dssp             CBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             ccccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC------------ceeEEEecccCcccchhhhhccccccccc
Confidence               544  8899999999999999999999999999876            4555566      66              


Q ss_pred             -ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          348 -NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       348 -~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                       ...|++++|+|++++++....      ++++|++++.||.|++|++.+++
T Consensus       353 ~~~~v~~~~~~~~g~~~~~~~~------~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          353 AEPGVFDVKFLKKGWRSGMGAD------LNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SSCCEEEEEEECTTTSBSTTCT------TSCEEEEEETTTEEEEEEEEC--
T ss_pred             cCCceeEEEecccccccccccc------ccceEEEecCCCcEEEEEcCCCC
Confidence             899999999994322222110      22799999999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-45  Score=319.46  Aligned_cols=325  Identities=14%  Similarity=0.187  Sum_probs=243.9

Q ss_pred             EEeccCCeeEeEE-E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC---CCceeeeeecCCceeeEEEEEecCCCE
Q psy988            7 LWHISRKECLCCF-Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD---KKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         7 vwd~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      .|+ .+++++..+ . |.+.|++++|+|.++++|++|+.||+|++||+.+   +..........|...|.+++|+|++++
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE
Confidence            466 356777777 4 8999999999996688999999999999999976   432211122258999999999999999


Q ss_pred             EEEEecCCEEEEEecc---CCeeeEEEEEeecccc--cc--CCCCeEEEe--eCCCCCeEEEeeCCCeEEEEEccCcccc
Q psy988           82 AVVGSYDGRCIFYTTD---QLKYHTQIHVRSTRGK--NA--TGRKISGIE--PMPGEDKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~--~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      |++++.||.|++||++   .++.............  ..  +...+.++.  +++++..|++++.|+.|++||+++++.+
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL  205 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence            9999999999999995   3333222221111110  11  455777777  6688999999999999999999999998


Q ss_pred             eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEeCCcceee
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~  231 (408)
                      ..+..+.+...+.+++|+|++++|++++.||.|++||++++...            ..+. .|...|.+++++|      
T Consensus       206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~v~~~~~~~------  267 (437)
T 3gre_A          206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI------------RSWSFGDHAPITHVEVCQ------  267 (437)
T ss_dssp             EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------------EEEBCTTCEEEEEEEECT------
T ss_pred             EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE------------EEEecCCCCceEEEEecc------
Confidence            88887444456899999999999999999999999999764322            2222 4455666666554      


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-------------------
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-------------------  292 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------  292 (408)
                                               .|+|++.+|++++.|+.|++||+++++.+..+.++.                   
T Consensus       268 -------------------------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (437)
T 3gre_A          268 -------------------------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN  322 (437)
T ss_dssp             -------------------------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred             -------------------------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence                                     356778889999999999999999999888887553                   


Q ss_pred             -----ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccc-------------------------cCccccce
Q psy988          293 -----NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVR-------------------------RDRNDFWE  342 (408)
Q Consensus       293 -----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------------------~~~~~~~~  342 (408)
                           +...|.+++|+ ++++|++|+.||.|++||+.++........                         ........
T Consensus       323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (437)
T 3gre_A          323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD  401 (437)
T ss_dssp             CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred             ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence                 33457889999 779999999999999999988743322111                         00011112


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCc--ccEEEEEecCCeEEEEe
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST--GYVLVSADFNGVIRVFL  392 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~v~iw~  392 (408)
                      ....|...|++++|++                +  +.+|++|+.||.|+||+
T Consensus       402 ~~~~h~~~I~~i~~~~----------------~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          402 DSLYHHDIINSISTCE----------------VDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -----CCCEEEEEEEE----------------SSSSEEEEEEETTSCEEEEC
T ss_pred             cccccccceeeEeeec----------------cCCceEEEEEcCCceEEEeC
Confidence            2334899999999998                5  78999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=304.83  Aligned_cols=253  Identities=17%  Similarity=0.175  Sum_probs=203.2

Q ss_pred             eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee--eeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           15 CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW--NEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        15 ~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      ......|...|.+++|+| ++ .|++|+.||+|+|||+.+++....  ..+.+|...|++++|+|+|++|++|+.|++|+
T Consensus        75 ~~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~  152 (344)
T 4gqb_B           75 CSAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK  152 (344)
T ss_dssp             CSEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            344556889999999999 64 688999999999999998875532  24568999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      +||+++++....+        .+|...|.+++|+|++. .|++++.|+.|++||+++++....+........+.+++|+|
T Consensus       153 iwd~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          153 VWDLAQQVVLSSY--------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             EEETTTTEEEEEE--------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred             EEECCCCcEEEEE--------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecC
Confidence            9999988765433        25678999999999885 67889999999999999999888776655556678899998


Q ss_pred             C-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          172 D-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       172 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      + +++|++|+.||.|++||++++            ..+..+.+|...|.+++|+|++.                      
T Consensus       225 ~~~~~l~sg~~dg~v~~wd~~~~------------~~~~~~~~h~~~v~~v~fsp~g~----------------------  270 (344)
T 4gqb_B          225 QQSEVFVFGDENGTVSLVDTKST------------SCVLSSAVHSQCVTGLVFSPHSV----------------------  270 (344)
T ss_dssp             SCTTEEEEEETTSEEEEEESCC--------------CCEEEECCSSCEEEEEECSSSS----------------------
T ss_pred             CCCcceEEeccCCcEEEEECCCC------------cEEEEEcCCCCCEEEEEEccCCC----------------------
Confidence            5 567889999999999999754            23344556666666666665543                      


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC-EEEEecCCceEEEeecccc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~  326 (408)
                                  ++|++++.|++|+|||++++++. .+.+|..  .|.+++|+|+++ +|++|+.||+|++|++.+.
T Consensus       271 ------------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~--~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          271 ------------PFLASLSEDCSLAVLDSSLSELF-RSQAHRD--FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ------------CCEEEEETTSCEEEECTTCCEEE-EECCCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             ------------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCC--CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence                        34789999999999999988765 4566655  899999999986 5678999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.2e-44  Score=315.32  Aligned_cols=316  Identities=12%  Similarity=0.123  Sum_probs=247.2

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      ||.|++||+.+++....+.....+....|+| ++++|++|+.||.|++||+.+++..  ..+.+|...|.+++|+|++++
T Consensus        77 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~  153 (420)
T 3vl1_A           77 DGHDFLFNTIIRDGSKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEA  153 (420)
T ss_dssp             TTEEEEEECCSEETTTTSCSCCEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEE--EETTSSSSCEEEEEECTTSSE
T ss_pred             CCcEEEEEecccceeeEEecCCceEEEEEec-CCCEEEEEECCCCEEEEeCCCccee--eecccccCccEEEEECCCCCE
Confidence            7899999999888777766445566667899 9999999999999999999987765  567899999999999999999


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc-
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-  160 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  160 (408)
                      |++++.|+.|++||+.+.+....+.        .|...|.+++|+|+++.|++++.|+.|++||+++++....+..+.. 
T Consensus       154 l~s~s~d~~i~iwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  225 (420)
T 3vl1_A          154 LISSSQDMQLKIWSVKDGSNPRTLI--------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP  225 (420)
T ss_dssp             EEEEETTSEEEEEETTTCCCCEEEE--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred             EEEEeCCCeEEEEeCCCCcCceEEc--------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence            9999999999999999877654432        4667999999999999999999999999999999988877765321 


Q ss_pred             ---------------------cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          161 ---------------------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       161 ---------------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                                           ...+.+++|+|++++|++++.||.|++||++++.....           ...       
T Consensus       226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~-------  287 (420)
T 3vl1_A          226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-----------LPS-------  287 (420)
T ss_dssp             TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-----------ECC-------
T ss_pred             CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-----------ccc-------
Confidence                                 13344566789999999999999999999976432211           111       


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC-eEEEecCCCeEEEEEcCCCee-eeEEeeccceece
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQ  297 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v  297 (408)
                                                  .+...+.+++|+|+++ +|++++.||.|++||+++++. +..+..+.. ..+
T Consensus       288 ----------------------------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v  338 (420)
T 3vl1_A          288 ----------------------------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPI  338 (420)
T ss_dssp             ----------------------------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCE
T ss_pred             ----------------------------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCc
Confidence                                        2334555566666666 789999999999999998754 666766432 356


Q ss_pred             eEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc
Q psy988          298 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  377 (408)
Q Consensus       298 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~  377 (408)
                      .++ +.+++++|++++.||.|++|++...........   ......+.+|...|.+++|+|                ++.
T Consensus       339 ~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~----------------~~~  398 (420)
T 3vl1_A          339 NNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIE---FETPTFLVSNDDAVSQFCYVS----------------DDE  398 (420)
T ss_dssp             EEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEEC---TTSCEEECCSSCCCCEEEEEC----------------CSS
T ss_pred             eEE-EeCCCCEEEEecCCccEEEEeccCCCCCcccee---ccCccEEccCCcceEEEEEcc----------------CCC
Confidence            666 556889999999999999999987432211110   012233567889999999999                666


Q ss_pred             ---EEEEEecCCeEEEEeCCC
Q psy988          378 ---VLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       378 ---~l~s~~~dg~v~iw~~~~  395 (408)
                         .|++++.+|.+++|++..
T Consensus       399 ~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          399 SNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SSCEEEEEETTTEEEEEESCC
T ss_pred             CcceEEEEcCCceEEEEeccC
Confidence               677777899999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.2e-43  Score=301.47  Aligned_cols=290  Identities=13%  Similarity=0.216  Sum_probs=237.3

Q ss_pred             eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee-eeeec--CCceeeEEEEEecCCCEEEEEecCCE
Q psy988           14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV-WNEVE--GQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      +.+..+.|.+.|++++|+| ++++|++++ ||.|++|++.++.... ...+.  .|...|.+++|+|++++|++++.||.
T Consensus        43 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  120 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             ccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            4445556999999999999 999999998 9999999998765321 12222  78999999999999999999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      |++||+.+.+.......      ..|...+.+++|+|+++++++++.||.|++||+++++....+..+..  .+.+++|+
T Consensus       121 i~~~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~  192 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDIS  192 (337)
T ss_dssp             EEEEECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC
T ss_pred             EEEEECCCCCcceeeec------ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEEC
Confidence            99999998763322221      23556899999999999999999999999999999988888877654  47899999


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      |++++|++++.||.|++||++++.....             .                                   .+.
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------------~-----------------------------------~~~  224 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQ-------------H-----------------------------------DFT  224 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEE-------------E-----------------------------------ECS
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEee-------------e-----------------------------------cCC
Confidence            9999999999999999999875432110             0                                   123


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                      ..+.+++|+|+++++++++.++.|++||+++++.. .+..|.  ..+.+++|+|++++|++++.||.|++|++.++.   
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---  298 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---  298 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc--cceeEEEECCCCCEEEEecCCCcEEEEECCCCe---
Confidence            34666777777888899999999999999987654 444443  478999999999999999999999999998762   


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                               .+ ....|...|.+++|+|                ++++|++++.||.|++|++
T Consensus       299 ---------~~-~~~~~~~~v~~~~~s~----------------~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          299 ---------SI-FQSKESSSVLSCDISV----------------DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---------EE-EEEECSSCEEEEEECT----------------TSCEEEEEETTSCEEEEEE
T ss_pred             ---------EE-EEecCCCcEEEEEECC----------------CCCEEEEecCCCeEEEEEE
Confidence                     22 3345889999999999                9999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.3e-44  Score=298.66  Aligned_cols=259  Identities=15%  Similarity=0.285  Sum_probs=216.0

Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      .+.+.+|...|.+++|+|++++|++++.||.|++||+++......+.        .|..+|.+++|+|++++|++++.|+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeCCCCEEEEECCCC
Confidence            36788999999999999999999999999999999999887654432        3456899999999999999999999


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      .|++||+++++.+..+.+|...  +.+++|+|++++|++|+.|+.|++||++++..           ....+.+|...  
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------~~~~~~~h~~~--  142 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDY--IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------LEQTFEGHEHF--  142 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------EEEEECCCCSC--
T ss_pred             EEEEEECCCCcEEEEEeCCCCc--EEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------hhhhhcccCCc--
Confidence            9999999999998888887654  88999999999999999999999999865311           11223344444  


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceecee
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI  298 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  298 (408)
                                                       |.+++|+| ++..|++++.|++|++||++++.....+..+. ...+.
T Consensus       143 ---------------------------------v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-~~~v~  188 (304)
T 2ynn_A          143 ---------------------------------VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVN  188 (304)
T ss_dssp             ---------------------------------EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCEE
T ss_pred             ---------------------------------EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC-cCcEE
Confidence                                             44555555 45678999999999999998887766665432 22566


Q ss_pred             EEEEcC--CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc
Q psy988          299 KASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG  376 (408)
Q Consensus       299 ~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~  376 (408)
                      .+.|+|  ++++|++|+.|+.|++||+.++            +++..+.+|...|.+++|+|                ++
T Consensus       189 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------------~~~~~~~~h~~~v~~~~~~p----------------~~  240 (304)
T 2ynn_A          189 YVDYYPLPDKPYMITASDDLTIKIWDYQTK------------SCVATLEGHMSNVSFAVFHP----------------TL  240 (304)
T ss_dssp             EEEECCSTTCCEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEECS----------------SS
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------------ccceeeCCCCCCEEEEEECC----------------CC
Confidence            778876  7889999999999999999886            67788999999999999999                89


Q ss_pred             cEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          377 YVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       377 ~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      ++|++|+.||+|++||+.+++....+.
T Consensus       241 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          241 PIIISGSEDGTLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeecc
Confidence            999999999999999999887665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-43  Score=336.54  Aligned_cols=361  Identities=14%  Similarity=0.143  Sum_probs=291.3

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ||.|+|||+.+++.+..+. |.+.|.+++|+| ++++|++++.||.|++||+.+++..  ..+.+|...|.+++|+|+++
T Consensus        34 ~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~v~~~~~s~~~~  110 (814)
T 3mkq_A           34 SGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPTKP  110 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSSS
T ss_pred             CCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE--EEEecCCCCEEEEEEeCCCC
Confidence            7999999999999999888 999999999999 9999999999999999999998876  67889999999999999999


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      +|++++.||.|++|++++.......       ...|...|.+++|+| ++..+++++.||.|++||+++++....+..+.
T Consensus       111 ~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  183 (814)
T 3mkq_A          111 YVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ  183 (814)
T ss_dssp             EEEEEETTSEEEEEEGGGTSEEEEE-------EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEE-------EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC
Confidence            9999999999999999876322221       124557899999999 88899999999999999999888777666543


Q ss_pred             ccccceEEEEec--CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          160 NVSSQIKASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       160 ~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      . ..+..++|+|  ++.+|++++.||.|++||+.++.            ....+..|...+.+++|+|+++.+++...+.
T Consensus       184 ~-~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          184 E-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             T-TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE------------EEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             C-CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            2 3477899999  99999999999999999997643            3345677889999999999999888775443


Q ss_pred             C-------CCCceeeecCCCceeeeeccCCCCCe-EEEecCCCeEEEEEcCCCeeeeEEee-------------------
Q psy988          238 K-------SESTGYVLNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKG-------------------  290 (408)
Q Consensus       238 ~-------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~-------------------  290 (408)
                      .       .......+..+...+.+++|+|++.. +++++.++.+.+|++........+..                   
T Consensus       251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred             eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence            2       34455566777889999999999874 24445567788998765432222210                   


Q ss_pred             ----------------------ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeec
Q psy988          291 ----------------------YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  348 (408)
Q Consensus       291 ----------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~  348 (408)
                                            ......+.+++|+|+|+++++++ ++.+.+|++...                 ...+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~-----------------~~~~~  392 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW-----------------RNKAF  392 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT-----------------EEEEE
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc-----------------cccCC
Confidence                                  01122467899999999999998 899999997542                 12356


Q ss_pred             cceEEEEecCCchhhhhccCCC------------------CCCCcc---cEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          349 AVVTCAVFAPCPELIIAQMEPD------------------KSESTG---YVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       349 ~~v~~~~~~~~~~~~~~~~~~~------------------~~s~~~---~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      +.+.+++|+|+++++++...+.                  .+++++   +.|++++.||.|++||+.+++....++
T Consensus       393 ~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  468 (814)
T 3mkq_A          393 GKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID  468 (814)
T ss_dssp             EECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES
T ss_pred             CceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe
Confidence            7788999999999888776544                  678898   688999999999999999887665544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.6e-44  Score=308.91  Aligned_cols=322  Identities=11%  Similarity=0.117  Sum_probs=246.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |.++|++++|+| ++++|++++.|+.|++||+.+++......+.+|...|.+++|+|++++|++++.||.|++||+++.+
T Consensus         7 ~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            7 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             cCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            899999999999 9999999999999999999988744447888999999999999999999999999999999998876


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc---ceee-cCccccccceEEEEecCCCEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL---SCKY-KGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      ......      ...|...|.+++|+|++++|++++.|+.|++||++.++.   ...+ ..+  ...+.+++|+|++++|
T Consensus        86 ~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           86 WKPTLV------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI--RSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEEEEE------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC--CSCEEEEEECTTSSEE
T ss_pred             eeeeEE------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc--CCCeeEEEEcCCCCEE
Confidence            433322      123567899999999999999999999999999998763   2222 222  3458899999999999


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ++++.||.|++||++.........    ..                  +.+       ...........+..+...+.++
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~----~~------------------~~~-------~~~~~~~~~~~~~~~~~~v~~~  208 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPA----PT------------------PWG-------SKMPFGELMFESSSSCGWVHGV  208 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCC----CB------------------TTB-------SCCCTTCEEEECCCCSSCEEEE
T ss_pred             EEEcCCCCEEEEEccccccccccc----cc------------------ccc-------cccchhhheEecCCCCCeEEEE
Confidence            999999999999985421110000    00                  000       0001112223344667778888


Q ss_pred             ccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc--cCcccc-cc
Q psy988          257 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH--DYAKFS-SV  333 (408)
Q Consensus       257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~-~~  333 (408)
                      +|+|++++|++++.|+.|++||+++++.+..+..+..  .+.+++|+|++++|++| .|+.|++|++..  +.-... ..
T Consensus       209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence            8888899999999999999999999999988887654  78899999999999988 899999999987  310000 00


Q ss_pred             c-------------------cCccccc------eee-eeeccceEEEEecCCchhhhhccCCCCCCCcc---cEEEEEec
Q psy988          334 R-------------------RDRNDFW------EGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTG---YVLVSADF  384 (408)
Q Consensus       334 ~-------------------~~~~~~~------~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~~~  384 (408)
                      .                   .......      ..+ .+|...|++++|++.               +|   ++|+||+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------------~g~~~~~l~s~~~  350 (372)
T 1k8k_C          286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG---------------GKAKCSQFCTTGM  350 (372)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES---------------TTTSCSEEEEEET
T ss_pred             CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC---------------CCcceeeEEEecC
Confidence            0                   0000111      223 489999999997742               66   99999999


Q ss_pred             CCeEEEEeCCCCCC
Q psy988          385 NGVIRVFLNKTKPK  398 (408)
Q Consensus       385 dg~v~iw~~~~~~~  398 (408)
                      ||.|++|++.+++.
T Consensus       351 Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          351 DGGMSIWDVRSLES  364 (372)
T ss_dssp             TSEEEEEEHHHHHH
T ss_pred             CCceEEEEecChhH
Confidence            99999999987553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-43  Score=322.40  Aligned_cols=357  Identities=14%  Similarity=0.174  Sum_probs=266.9

Q ss_pred             CCceEEEEeccCC--------eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCc
Q psy988            1 MDKTVRLWHISRK--------ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQT   67 (408)
Q Consensus         1 ~Dg~i~vwd~~~~--------~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~   67 (408)
                      .||+|+|||+.++        +.+..+. |...|.+++|+| ++++|++++.+    +.|++||  .++..  ..+.+|.
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~--~~~~~~~  160 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSL--GEVSGHS  160 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEE--EECCSCS
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcc--eeeecCC
Confidence            3899999999755        6666666 999999999999 99999999987    6888888  44443  6788999


Q ss_pred             eeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCC---CeEEEeeCCC-CCeEEEeeCCCeEE
Q psy988           68 KLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR---KISGIEPMPG-EDKILVTSNDSRIR  142 (408)
Q Consensus        68 ~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~  142 (408)
                      ..|.+++|+|+++ .+++++.|+.|++||+.+.+....+.        .|..   .|.+++|+|+ +++|++++.||.|+
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--------THHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec--------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence            9999999999998 89999999999999998876544332        3445   8999999999 99999999999999


Q ss_pred             EEEccCcccceee-c---CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeeccc----------------
Q psy988          143 LYDLRDLNLSCKY-K---GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR----------------  202 (408)
Q Consensus       143 i~d~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------  202 (408)
                      +||+++++.+..+ .   .+.  ..+.+++|+ ++++|++++.|+.|++||++++.........                
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQ--GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN  309 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCC--SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred             EEECCCCCEeEEecccccccC--CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence            9999999888877 4   444  448899999 9999999999999999999866543221111                


Q ss_pred             -----------------CCCccccccccccceEEEEEEeCC---------------------------------cceeee
Q psy988          203 -----------------DRNDFWEGIKAHNAVVTCAVFAPC---------------------------------PELIIA  232 (408)
Q Consensus       203 -----------------~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~~~~  232 (408)
                                       ........+..|...|.+++| |+                                 +..+++
T Consensus       310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~  388 (615)
T 1pgu_A          310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS  388 (615)
T ss_dssp             TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEE
T ss_pred             CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEE
Confidence                             001223344455555555555 44                                 333333


Q ss_pred             ecCCCCC----------------------------------------CCceeeecCCCceeeeeccCCCCCeEEEecC-C
Q psy988          233 QMEPDKS----------------------------------------ESTGYVLNATGRKISGIEPMPGEDKILVTSN-D  271 (408)
Q Consensus       233 ~~~~~~~----------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d  271 (408)
                      ...+...                                        .........+...+.+++++  ++++++++. |
T Consensus       389 ~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d  466 (615)
T 1pgu_A          389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEG  466 (615)
T ss_dssp             EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTT
T ss_pred             EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCC
Confidence            2211100                                        00000000244567777777  888999998 9


Q ss_pred             CeEEEEEcCCCeee-eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-ecc
Q psy988          272 SRIRLYDLRDLNLS-CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNA  349 (408)
Q Consensus       272 ~~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~  349 (408)
                      +.|++||+.+++.. ..+..|  ...+.+++|+|++++|++++.||.|++||+.++            +.+..+.+ |..
T Consensus       467 ~~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~h~~  532 (615)
T 1pgu_A          467 NTIQVFKLSDLEVSFDLKTPL--RAKPSYISISPSETYIAAGDVMGKILLYDLQSR------------EVKTSRWAFRTS  532 (615)
T ss_dssp             SCEEEEETTEEEEEEECSSCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEECCSCCCSS
T ss_pred             CeEEEEECCCccccccccCCc--cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC------------cceeEeecCCCC
Confidence            99999999987665 333343  448999999999999999999999999999886            55666777 999


Q ss_pred             ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          350 VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       350 ~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      .|++++|+|...... .     -..++++|++++.||.|++|++.++
T Consensus       533 ~v~~~~~sp~~~~~~-~-----~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          533 KINAISWKPAEKGAN-E-----EEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             CEEEEEECCCC------------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ceeEEEEcCcccccc-c-----cccCCCEEEEEcCCCcEEEEECCCC
Confidence            999999998100000 0     0004789999999999999999987

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=297.13  Aligned_cols=286  Identities=15%  Similarity=0.271  Sum_probs=220.3

Q ss_pred             CCceEEEEeccCCeeEeE--E--EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            1 MDKTVRLWHISRKECLCC--F--QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~--~--~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      .|++|+|||+.+++....  +  +|.+.|.+++|+| ++++|++|+.|++|++|++..+.......+.+|...|.+++|+
T Consensus        36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s  114 (345)
T 3fm0_A           36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA  114 (345)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe
Confidence            389999999998865432  2  3999999999999 9999999999999999999888765557899999999999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc--cee
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCK  154 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~  154 (408)
                      |++++|++++.|+.|++||+++.........     ...|...|.+++|+|++++|++++.|+.|++||.++++.  ...
T Consensus       115 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~  189 (345)
T 3fm0_A          115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSV-----LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT  189 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECTTSCEEEEEE-----ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCCeEEEEE-----ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE
Confidence            9999999999999999999987654322211     235667899999999999999999999999999987753  345


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      +.+|..  .+.+++|+|++++|++++.|+.|++||........         .+.. ........++             
T Consensus       190 ~~~h~~--~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~---------~~~~-~~~~~~~~~~-------------  244 (345)
T 3fm0_A          190 LEGHES--TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ---------GVAC-SGSDPSWKCI-------------  244 (345)
T ss_dssp             ECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT---------CCCC-C---CEEEEE-------------
T ss_pred             ecCCCC--ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc---------ccee-eccCCcccee-------------
Confidence            666554  48899999999999999999999999974321100         0000 0000000010             


Q ss_pred             CCCCCCCceeee-cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee----eeEEee---ccceeceeEEEEcCCC
Q psy988          235 EPDKSESTGYVL-NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL----SCKYKG---YVNVSSQIKASFSHDG  306 (408)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~---~~~~~~v~~~~~s~~~  306 (408)
                               ..+ ..|...|.+++|+|++..|++++.|+.|++|+......    ...+..   ..+...|.+++|+|++
T Consensus       245 ---------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          245 ---------CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             ---------EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred             ---------EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence                     111 13677889999999999999999999999999876431    111111   1234489999999998


Q ss_pred             -CEEEEecCCceEEEeecccc
Q psy988          307 -KYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       307 -~~l~~~~~dg~i~iw~~~~~  326 (408)
                       .+||+|+.||.|++|++.+.
T Consensus       316 ~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          316 PGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             TTEEEEEETTSCEEEEEECC-
T ss_pred             ceEEEEcCCCCcEEEEEecCC
Confidence             59999999999999999876

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.8e-44  Score=304.48  Aligned_cols=302  Identities=12%  Similarity=0.222  Sum_probs=233.2

Q ss_pred             eCCceEEEEEcCCCCC-EEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEEEecC---CCEEEEEecCCEEEE
Q psy988           21 HIDFVTAICFHPRDDR-YFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN---GKFAVVGSYDGRCIF   93 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~-~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i   93 (408)
                      |.+.|.+++|+| ++. ++++|+.   ||.|++||+.+++.... ...+|...|.+++|+|+   +++|++++.||.|++
T Consensus        17 h~~~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           17 FNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECSSSEEEE-EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             CCCceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCCCcccce-eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            999999999999 675 5556665   89999999998876542 33378899999999998   699999999999999


Q ss_pred             EeccCCe-eeEEEEEeeccccccCCCCeEEE------eeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccc--ccc
Q psy988           94 YTTDQLK-YHTQIHVRSTRGKNATGRKISGI------EPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVN--VSS  163 (408)
Q Consensus        94 w~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~--~~~  163 (408)
                      ||+.+.+ ....+        ..|...|.++      +|+|+++.|++++.||.|++||+++++ ....+..+..  ...
T Consensus        95 wd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           95 WNLEAPEMPVYSV--------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ECTTSCSSCSEEE--------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             EeCCCCCccEEEE--------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            9999876 33222        2466789999      567899999999999999999999887 5666655443  234


Q ss_pred             ceEEE----EecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          164 QIKAS----FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       164 ~~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      +.+++    |+|++++|++++.||.|++||++++...             ...                           
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~---------------------------  206 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-------------WET---------------------------  206 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-------------EEE---------------------------
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-------------eec---------------------------
Confidence            66676    7889999999999999999999764321             112                           


Q ss_pred             CCceeeecCCCceeeeeccCC---CCCeEEEecCCCeEEEEEcCCCeeeeEEe-----eccceeceeEEEEcCCCC-EEE
Q psy988          240 ESTGYVLNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLRDLNLSCKYK-----GYVNVSSQIKASFSHDGK-YIV  310 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~-~l~  310 (408)
                              .+...+.+++|+|   ++.++++++.||.|++||+++++....+.     .|.  ..+.+++|+|+++ +|+
T Consensus       207 --------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          207 --------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFL  276 (357)
T ss_dssp             --------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS--SCEEEEEEETTEEEEEE
T ss_pred             --------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc--CCEEEEEECCCCCcEEE
Confidence                    2334455666666   67788999999999999999887766554     544  4889999999999 899


Q ss_pred             EecCCceEEEeeccccCccccccc-------cCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE-EE
Q psy988          311 SGSENQCIYIWKTHHDYAKFSSVR-------RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV-SA  382 (408)
Q Consensus       311 ~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~  382 (408)
                      +++.||.|++||+..+........       ....+.+..+.+|...|++++|+|                ++++|+ ++
T Consensus       277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------------~~~~l~~s~  340 (357)
T 3i2n_A          277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP----------------DKRGLCVCS  340 (357)
T ss_dssp             EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS----------------SSTTEEEEE
T ss_pred             EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC----------------CCCeEEEEe
Confidence            999999999999987543211100       001145677889999999999999                888888 89


Q ss_pred             ecCCeEEEEeCCCCCC
Q psy988          383 DFNGVIRVFLNKTKPK  398 (408)
Q Consensus       383 ~~dg~v~iw~~~~~~~  398 (408)
                      +.||.|++|++.+.+.
T Consensus       341 ~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          341 SFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ETTSEEEEEEECC---
T ss_pred             cCCCcEEEEECCCccc
Confidence            9999999999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.2e-43  Score=325.52  Aligned_cols=304  Identities=18%  Similarity=0.219  Sum_probs=229.1

Q ss_pred             eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---eeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           17 CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        17 ~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      ..+. |.+.|++++|+|+++++|+||+.|++|++|++.+...   .....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            3444 9999999999995668999999999999999976432   22357889999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-CccccccceEEEEec
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNVSSQIKASFSH  171 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  171 (408)
                      +||+.++.....+        ..|...|.+++|+|++++|++++.|+.|++||........... ...+...+.+++|+|
T Consensus       456 vwd~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          456 LWDLAAGVSTRRF--------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             EEETTTTEEEEEE--------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred             EEECCCCcceeEE--------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence            9999987654433        2566799999999999999999999999999986543322221 122334588999999


Q ss_pred             CC--CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCC
Q psy988          172 DG--KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNAT  249 (408)
Q Consensus       172 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (408)
                      ++  ..|++++.|+.|++||+++..            ....+.                                   .|
T Consensus       528 ~~~~~~l~s~s~d~~v~vwd~~~~~------------~~~~~~-----------------------------------~h  560 (694)
T 3dm0_A          528 NTLQPTIVSASWDKTVKVWNLSNCK------------LRSTLA-----------------------------------GH  560 (694)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCC------------EEEEEC-----------------------------------CC
T ss_pred             CCCcceEEEEeCCCeEEEEECCCCc------------EEEEEc-----------------------------------CC
Confidence            87  579999999999999986432            112223                                   44


Q ss_pred             CceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+..   ...+.+++|+|++.+|++++ ++.|++||+.++...
T Consensus       561 ~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV  636 (694)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence            55566666667777889999999999999999988766654   23688999999999888776 556999999876322


Q ss_pred             ccccccCccc-------cceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          330 FSSVRRDRND-------FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       330 ~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ..........       .......+...+++++|+|                +|++|++|+.||.|++|++..
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp----------------dg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA----------------DGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEECCCCC----------------CCCCEEEEEECT----------------TSSEEEEEETTSEEEEEEC--
T ss_pred             hhhccccccccccccccccccCCceeEEeeeEEEcC----------------CCCEEEEEcCCCeEEEEeccC
Confidence            1100000000       0000111222478999999                999999999999999999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-44  Score=318.17  Aligned_cols=313  Identities=11%  Similarity=0.072  Sum_probs=224.3

Q ss_pred             CCceEEEEeccCCeeE----eEEE-eCCceEEEEEcCC-----CCCEEEEEeCCCcEEEEecCCCCce---------eee
Q psy988            1 MDKTVRLWHISRKECL----CCFQ-HIDFVTAICFHPR-----DDRYFLSGSLDGKLRLWNIPDKKVA---------VWN   61 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~----~~~~-h~~~v~~~~~sp~-----~~~~l~t~~~dg~i~iw~~~~~~~~---------~~~   61 (408)
                      .|++|+|||+.+++..    ..+. |.+.|.+++|+|.     ++.+||+++.||+|++||+.++...         ...
T Consensus       181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~  260 (524)
T 2j04_B          181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL  260 (524)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred             CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence            3899999999887653    3344 6899999999993     2579999999999999999876422         123


Q ss_pred             eecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEE--eeCCCC-CeEEEeeCC
Q psy988           62 EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGI--EPMPGE-DKILVTSND  138 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d  138 (408)
                      .+.+|...|++++|++++ .|++|+.||+|++||+++......       ....|...|.++  .|+|++ .+|++++.|
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D  332 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVD  332 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccC
Confidence            677899999999999864 899999999999999986532111       113566799999  578887 889999999


Q ss_pred             CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988          139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  218 (408)
Q Consensus       139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (408)
                      ++|++||+++++....+.++.....+.+++|+|+++.+++++.|+.|++||++.+.            ....+.+|.   
T Consensus       333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------------~~~~l~gH~---  397 (524)
T 2j04_B          333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------------AVHPLVSRE---  397 (524)
T ss_dssp             SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------------CCEEEEECS---
T ss_pred             CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------------cceeeecCC---
Confidence            99999999998887777666543346789999999999999999999999986532            112233444   


Q ss_pred             EEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec---ccee
Q psy988          219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY---VNVS  295 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~  295 (408)
                                                      ..|.+++|+|++++|++|+.|++|++||+..+ ....+...   ....
T Consensus       398 --------------------------------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~  444 (524)
T 2j04_B          398 --------------------------------TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSL  444 (524)
T ss_dssp             --------------------------------SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCC
T ss_pred             --------------------------------CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeee
Confidence                                            44555555666677799999999999998654 22221111   1112


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeecc-ccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTH-HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  374 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~  374 (408)
                      .+.+++|+|+++.+.. ..  .+.+|+.. ++            ..+..+.+|...|.+++|+|+++             
T Consensus       445 ~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g------------~~~~~l~gh~~~V~~Vafsp~~~-------------  496 (524)
T 2j04_B          445 RLWKWDYSIKDDKYRI-DS--SYEVYPLTVND------------VSKAKIDAHGINITCTKWNETSA-------------  496 (524)
T ss_dssp             EEEECBCCSSSCEEEE-CC--CCCCCC-------------------------CCCSCCCEEECCSTT-------------
T ss_pred             EEEEeccCCCCCeEEc-cC--CceecccccCC------------cceeeecCCCceEEEEECCCCCC-------------
Confidence            4668999999985532 22  23334332 12            46677889999999999999322             


Q ss_pred             cccEEEEEecCCeEEEEeCCCCC
Q psy988          375 TGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       375 ~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      .+..||+|+.||.||||++....
T Consensus       497 ~~~~lAsg~~~g~vrlw~l~~~~  519 (524)
T 2j04_B          497 GGKCYAFSNSAGLLTLEYLSLEH  519 (524)
T ss_dssp             TTTEEEEECTTSEEEEEECSCC-
T ss_pred             ccHHHHhhccCceEEEEEccccc
Confidence            25699999999999999987644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.6e-43  Score=297.96  Aligned_cols=264  Identities=17%  Similarity=0.237  Sum_probs=224.0

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----ceeeeeecCCceeeEEEEE
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK----VAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~   75 (408)
                      .||+|+|||..+++....+. |...|.+++|+| ++.+|++|+.|+.+++|++....    ......+.+|...|.+++|
T Consensus        84 ~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  162 (354)
T 2pbi_B           84 QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF  162 (354)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence            38999999999999888887 999999999999 99999999999999999986532    1223567789999999999


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCCCeEEEEEccCcccce
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      +|++..|++++.|++|++||+++++....+.        .|...|.++.|+|  +++.|++++.||.|++||+++++++.
T Consensus       163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~  234 (354)
T 2pbi_B          163 TNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ  234 (354)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            9999999999999999999999887654432        4567899999987  46899999999999999999999888


Q ss_pred             eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  233 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  233 (408)
                      .+..|...  +.+++|+|++++|++++.|+.|++||++.+.....            +.            .        
T Consensus       235 ~~~~h~~~--v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~------------~--------  280 (354)
T 2pbi_B          235 AFETHESD--VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI------------YS------------K--------  280 (354)
T ss_dssp             EECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------EC------------C--------
T ss_pred             EecCCCCC--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE------------Ec------------C--------
Confidence            88877654  88999999999999999999999999875321110            00            0        


Q ss_pred             cCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec
Q psy988          234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  313 (408)
                                   ..+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|..  .|.+++|+|+|++|++|+
T Consensus       281 -------------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          281 -------------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             -------------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEE
T ss_pred             -------------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEc
Confidence                         01123466777888888899999999999999999999888888765  899999999999999999


Q ss_pred             CCceEEEee
Q psy988          314 ENQCIYIWK  322 (408)
Q Consensus       314 ~dg~i~iw~  322 (408)
                      .||.|++|+
T Consensus       346 ~D~~v~vW~  354 (354)
T 2pbi_B          346 WDHTLRVWA  354 (354)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCCEEecC
Confidence            999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-43  Score=305.19  Aligned_cols=316  Identities=13%  Similarity=0.163  Sum_probs=243.1

Q ss_pred             eCCceEEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceeeEEEEEecC----CCEEEEEecC
Q psy988           21 HIDFVTAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLITAANFCEN----GKFAVVGSYD   88 (408)
Q Consensus        21 h~~~v~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~~~~~d   88 (408)
                      |.+.|++++|+|.   +...+++++.++.|++|++.+++..  ..+.     .|...|.+++|+|+    +++|++++.|
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            9999999999982   2556666777789999999876654  2332     26678999999999    6799999999


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceee---cCccccccc
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKY---KGYVNVSSQ  164 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~  164 (408)
                      |.|++||+.+.+....+.        .|...|.+++|+| ++..|++++.||.|++||+++++....+   ..+.  ..+
T Consensus        95 g~i~v~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~v  164 (366)
T 3k26_A           95 GIIRIINPITMQCIKHYV--------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR--DEV  164 (366)
T ss_dssp             CEEEEECTTTCCEEEEEE--------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS--SCE
T ss_pred             CEEEEEEchhceEeeeec--------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc--Cce
Confidence            999999999877654432        4567999999999 8999999999999999999998887777   3443  458


Q ss_pred             eEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      .+++|+|++++|++++.||.|++||++++....            .+..      .+.++|++..+...... .......
T Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~  225 (366)
T 3k26_A          165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN------------AIKE------SYDYNPNKTNRPFISQK-IHFPDFS  225 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESCSHHHHH------------HHHH------HHTCCGGGCSSCCCCEE-ECCCSEE
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEECCCCcccc------------ccce------eEEecCCCCccccccee-eccCccc
Confidence            899999999999999999999999997643221            1111      12233443333221110 1112223


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee--------------eeEEeeccceeceeEEEEcCC--CCE
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--------------SCKYKGYVNVSSQIKASFSHD--GKY  308 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~  308 (408)
                      ....+...|.+++|+  ++++++++.|+.|++||+.+++.              +..+..|..  .+.+++|+|+  +++
T Consensus       226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKM  301 (366)
T ss_dssp             ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSE
T ss_pred             cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcE
Confidence            344578889999998  77999999999999999987644              555666544  6888999999  999


Q ss_pred             EEEecCCceEEEeeccccCccccccccCccccceeeeee--ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC
Q psy988          309 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG  386 (408)
Q Consensus       309 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  386 (408)
                      |++|+.||.|++||+.++....        .....+.+|  ...|++++|+|                ++++|++++.||
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~----------------~~~~l~s~~~dg  357 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHK--------AKCTTLTHHKCGAAIRQTSFSR----------------DSSILIAVCDDA  357 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGG--------CEEEEECCTTCCSCEEEEEECT----------------TSSEEEEEETTS
T ss_pred             EEEEecCCcEEEEECCCCCCcc--------ccceEEcccccCCceEEEEeCC----------------CCCeEEEEeCCC
Confidence            9999999999999998863211        233456667  79999999999                999999999999


Q ss_pred             eEEEEeCCC
Q psy988          387 VIRVFLNKT  395 (408)
Q Consensus       387 ~v~iw~~~~  395 (408)
                      .|++||+.+
T Consensus       358 ~i~iwd~~~  366 (366)
T 3k26_A          358 SIWRWDRLR  366 (366)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEecC
Confidence            999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-43  Score=293.26  Aligned_cols=292  Identities=16%  Similarity=0.204  Sum_probs=237.9

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      +....+. |.+.|++++| | ++++|++++.||.|++||+.+++..  ..+..|...|.+++|+|++++|++++.||.++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLG--TVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEE--EEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEE--EEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            6667776 9999999999 8 8999999999999999999887655  67788999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec-
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-  171 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-  171 (408)
                      +|++.........     .....|...|.++.|  +++.+++++.||.|++||  .++....+..+..  .+.++.+.| 
T Consensus        85 ~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~  153 (313)
T 3odt_A           85 GVPLFATSGEDPL-----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF  153 (313)
T ss_dssp             EEETTCCTTSCC------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred             EEEeeecCCCCcc-----cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence            9998765322111     112356679999999  578999999999999999  5566666666554  477888888 


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccc-ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      +++++++++.||.|++||....              ...+.. +...+.+++|+|                         
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~i~~~~~~~-------------------------  194 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQNDKV--------------IKTFSGIHNDVVRHLAVVD-------------------------  194 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETTEE--------------EEEECSSCSSCEEEEEEEE-------------------------
T ss_pred             CCCEEEEEECCCCEEEEecCce--------------EEEEeccCcccEEEEEEcC-------------------------
Confidence            9999999999999999994321              112222 444555555555                         


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                                ++. +++++.|+.|++||+++++.+..+..|..  .+.+++|+|++ .|++++.||.|++||+.++    
T Consensus       195 ----------~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~----  256 (313)
T 3odt_A          195 ----------DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG----  256 (313)
T ss_dssp             ----------TTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-CEEEEETTSEEEEECTTTC----
T ss_pred             ----------CCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-CEEEEecCCEEEEEECCCC----
Confidence                      444 67889999999999999999999987765  78999999999 6889999999999999887    


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                              +.+..+..|...|.+++|+|                +++ +++++.||.|++|++.+++.....
T Consensus       257 --------~~~~~~~~~~~~i~~~~~~~----------------~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          257 --------SLKQVITLPAISIWSVDCMS----------------NGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             --------CEEEEEECSSSCEEEEEECT----------------TSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             --------ceeEEEeccCceEEEEEEcc----------------CCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence                    56777888999999999999                887 667899999999999987765443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-43  Score=309.16  Aligned_cols=307  Identities=12%  Similarity=0.139  Sum_probs=252.2

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      +++++|+| ++++|++++.||.|++||+.+++..  ..+..| ..+....|++++++|++++.||.|++||+.+.+....
T Consensus        59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGS--KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             CTTCEEEE-EETTEEEEEETTEEEEEECCSEETT--TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ccceeeee-cCCeEEEEEcCCcEEEEEeccccee--eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence            45799999 9999999999999999999887655  345555 4555667899999999999999999999987654321


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCce
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                              ...|...|.+++|+|++++|++++.|+.|++||+++++....+.+|...  +.+++|+|++++|++++.||.
T Consensus       135 --------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~  204 (420)
T 3vl1_A          135 --------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGT  204 (420)
T ss_dssp             --------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC--EEEEEEETTTTEEEEEETTSC
T ss_pred             --------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc--EEEEEEcCCCCEEEEEcCCCc
Confidence                    2356789999999999999999999999999999999988888776654  889999999999999999999


Q ss_pred             EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe
Q psy988          185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK  264 (408)
Q Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (408)
                      |++||++++.....         +.....+...+.++.+.|.+...              ....+...+.+++|+|++++
T Consensus       205 v~iwd~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~v~~~~~s~~~~~  261 (420)
T 3vl1_A          205 IRLWECGTGTTIHT---------FNRKENPHDGVNSIALFVGTDRQ--------------LHEISTSKKNNLEFGTYGKY  261 (420)
T ss_dssp             EEEEETTTTEEEEE---------ECBTTBTTCCEEEEEEEECCCSS--------------CGGGCCCCCCTTCSSCTTEE
T ss_pred             EEEeECCCCceeEE---------eecCCCCCCCccEEEEecCCcce--------------eeecccCcccceEEcCCCCE
Confidence            99999987644322         11123567789999998876543              22345678899999999999


Q ss_pred             EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC-EEEEecCCceEEEeeccccCccccccccCcccccee
Q psy988          265 ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  343 (408)
Q Consensus       265 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  343 (408)
                      |++++.||.|++||+++++....+... +...+.+++|+|+++ +|++|+.||.|++||+.++.           .++..
T Consensus       262 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-----------~~~~~  329 (420)
T 3vl1_A          262 VIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-----------CPVGE  329 (420)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEE
T ss_pred             EEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-----------Cchhh
Confidence            999999999999999999887777542 234789999999999 99999999999999998752           23555


Q ss_pred             eee-eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          344 IKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       344 ~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      +.+ |...|.++.| +                ++++|++++.||.|++|++....
T Consensus       330 ~~~~~~~~v~~~~~-~----------------~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          330 FLINEGTPINNVYF-A----------------AGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             EEESTTSCEEEEEE-E----------------TTEEEEEETTTEEEEEEEECCTT
T ss_pred             hhccCCCCceEEEe-C----------------CCCEEEEecCCccEEEEeccCCC
Confidence            666 6677888855 4                67899999999999999998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-43  Score=300.62  Aligned_cols=266  Identities=14%  Similarity=0.163  Sum_probs=207.2

Q ss_pred             CceEEEEeccCCeeE-----eEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee--eeecCCceeeEEEE
Q psy988            2 DKTVRLWHISRKECL-----CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW--NEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~-----~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~   74 (408)
                      |++|++|+..++...     ...+|...|.+++|+| ++. +++++.||+|+|||+.+++....  ....+|...|.+++
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~  146 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS  146 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred             cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence            789999998776543     3446999999999999 765 66778899999999988765432  24458999999999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccce
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  153 (408)
                      |+|++++|++++.|+.|++||+++++....+        ..|...|.+++|+|++. .+++++.|+.|++||+++++...
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY--------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence            9999999999999999999999988765443        24667999999999875 78899999999999999998877


Q ss_pred             eecCccccccceEEEEecCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          154 KYKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      .+........+.+++|+|++ .+|++|+.|+.|++||++++            .....+..|...|.+++|+|++.    
T Consensus       219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------------~~~~~~~~~~~~v~~l~~sp~~~----  282 (357)
T 4g56_B          219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------------DSAQTSAVHSQNITGLAYSYHSS----  282 (357)
T ss_dssp             BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------------GGCEEECCCSSCEEEEEECSSSS----
T ss_pred             eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------------cEeEEEeccceeEEEEEEcCCCC----
Confidence            76665566668899999974 67889999999999999754            22334455556666666655543    


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEE
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVS  311 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  311 (408)
                                                    ++|++++.|++|+|||+++++++..+ +|..  .|++++|+| ++++|++
T Consensus       283 ------------------------------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~--~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          283 ------------------------------PFLASISEDCTVAVLDADFSEVFRDL-SHRD--FVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             ------------------------------CCEEEEETTSCEEEECTTSCEEEEEC-CCSS--CEEEEEECSSSTTEEEE
T ss_pred             ------------------------------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCC--CEEEEEEeCCCCCEEEE
Confidence                                          35789999999999999998877554 4544  899999998 8999999


Q ss_pred             ecCCceEEEeecccc
Q psy988          312 GSENQCIYIWKTHHD  326 (408)
Q Consensus       312 ~~~dg~i~iw~~~~~  326 (408)
                      |+.||+|++|++...
T Consensus       330 ~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          330 VGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EETTSCEEEEECC--
T ss_pred             EcCCCeEEEEECCCC
Confidence            999999999999764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-42  Score=301.03  Aligned_cols=275  Identities=19%  Similarity=0.333  Sum_probs=221.0

Q ss_pred             CceEEEEeccCCeeEeEEE-eC------------------CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee
Q psy988            2 DKTVRLWHISRKECLCCFQ-HI------------------DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE   62 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~------------------~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~   62 (408)
                      |++++||++.+++.+..+. |.                  ..|.+++|+| ++++|++|+.|+.|++||+.+++..  ..
T Consensus        84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~--~~  160 (393)
T 1erj_A           84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIV--MI  160 (393)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE--EE
T ss_pred             CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEE--EE
Confidence            6789999999999887775 32                  2499999999 9999999999999999999988765  67


Q ss_pred             ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeE
Q psy988           63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRI  141 (408)
Q Consensus        63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  141 (408)
                      +.+|...|.+++|+|++++|++++.|++|++||+++++......         +...+.+++|+| ++++|++++.|+.|
T Consensus       161 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---------IEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---------cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            89999999999999999999999999999999999887544332         234799999999 88999999999999


Q ss_pred             EEEEccCcccceeecC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          142 RLYDLRDLNLSCKYKG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      ++||+++++.+..+..     ..+...+.+++|+|++++|++++.|+.|++||++.............            
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~------------  299 (393)
T 1erj_A          232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS------------  299 (393)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------
T ss_pred             EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC------------
Confidence            9999999887666521     12334588999999999999999999999999975322110000000            


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceec
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS  296 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  296 (408)
                                             ......+..|...|.+++++|++.+|++++.|+.|++||+.+++++..+.+|..  .
T Consensus       300 -----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~  354 (393)
T 1erj_A          300 -----------------------GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--S  354 (393)
T ss_dssp             ------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--C
T ss_pred             -----------------------CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--C
Confidence                                   011122335666777888888888899999999999999999999999988766  7


Q ss_pred             eeEEEEcC------CCCEEEEecCCceEEEeeccc
Q psy988          297 QIKASFSH------DGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       297 v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      |.+++|++      ++++|++|+.||.|++|++..
T Consensus       355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            88998876      688999999999999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-44  Score=310.84  Aligned_cols=317  Identities=12%  Similarity=0.080  Sum_probs=225.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |.++|++++|+| ++++|++|+.|+.|++||+.++.......+.+|...|.+++|+|++++|++++.||.|++||+.+.+
T Consensus        10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            778999999999 9999999999999999999987433447888999999999999999999999999999999998765


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc---ceeecC-ccccccceEEEEecCCCEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL---SCKYKG-YVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l  176 (408)
                      ....     ......|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |.  ..+.+++|+|++++|
T Consensus        89 ~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           89 TWKQ-----TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR--STILSLDWHPNNVLL  161 (377)
T ss_dssp             CCCC-----EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC--SCEEEEEECTTSSEE
T ss_pred             ceee-----eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC--CCeEEEEEcCCCCEE
Confidence            1111     111234667999999999999999999999999999998763   555555 44  458899999999999


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ++++.|+.|++||+............        ..+...                     ........+ .|...|.++
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~---------------------~~~~~~~~~-~~~~~v~~~  211 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEAS--------VWGSRL---------------------PFNTVCAEY-PSGGWVHAV  211 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSC--------SSCSCC---------------------CEEEEEECC-CCSSSEEEE
T ss_pred             EEEeCCCEEEEEEEEecccCCCcccc--------cccccc---------------------chhhhhhcc-cCCceEEEE
Confidence            99999999999999643211100000        000000                     000111122 566778888


Q ss_pred             ccCCCCCeEEEecCCCeEEEEEcCCCee----eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC-cccc
Q psy988          257 EPMPGEDKILVTSNDSRIRLYDLRDLNL----SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY-AKFS  331 (408)
Q Consensus       257 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~  331 (408)
                      +|+|++++|++++.|+.|++||+.+++.    +..+..|..  .+.+++|+|++++|++|+.++.+ +|+..... ....
T Consensus       212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~  288 (377)
T 3dwl_C          212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTR  288 (377)
T ss_dssp             EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSB
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEe
Confidence            8888899999999999999999999887    667777655  78999999999999999877766 66554221 1111


Q ss_pred             ccccCcc---------------------------------------ccceeeeeeccceEEEEecCCchhhhhccCCCCC
Q psy988          332 SVRRDRN---------------------------------------DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  372 (408)
Q Consensus       332 ~~~~~~~---------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  372 (408)
                      .......                                       ........|.+.|+++++.+.             
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~-------------  355 (377)
T 3dwl_C          289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG-------------  355 (377)
T ss_dssp             CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEE-------------
T ss_pred             eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCC-------------
Confidence            0000000                                       001112249999999998762             


Q ss_pred             CCccc---EEEEEecCCeEEEEeC
Q psy988          373 ESTGY---VLVSADFNGVIRVFLN  393 (408)
Q Consensus       373 s~~~~---~l~s~~~dg~v~iw~~  393 (408)
                        ++.   .|+|||.||.|++||+
T Consensus       356 --~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          356 --TPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             --ETTEEEEEEEEETTSEEEEECC
T ss_pred             --CCCceEEEEeecCCCcEEEecC
Confidence              223   6999999999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-43  Score=307.94  Aligned_cols=330  Identities=16%  Similarity=0.202  Sum_probs=252.5

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-----------cCCcee
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-----------EGQTKL   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----------~~~~~~   69 (408)
                      |+.+++|+++.++....+. |.+.|++++|+|.++++|++|+.||.|++||+.++........           .+|...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            4567889888888777776 9999999999997788999999999999999998765532221           359999


Q ss_pred             eEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeCCCeEEEEE
Q psy988           70 ITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSNDSRIRLYD  145 (408)
Q Consensus        70 v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d  145 (408)
                      |.+++|+| ++.+|++++.||.|++||+.+.+......         +...+.++.++|.   +..+++++.++.|++||
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            99999999 78899999999999999999887655443         2347888998884   44899999999999999


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      +++++....+..+...  +.+++|+|++++ |++++.||.|++||++........           +..+..        
T Consensus       173 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~--------  231 (408)
T 4a11_B          173 LKSGSCSHILQGHRQE--ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT-----------LDQHNG--------  231 (408)
T ss_dssp             SSSSCCCEEECCCCSC--EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE-----------CCTTTT--------
T ss_pred             CCCcceeeeecCCCCc--EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc-----------cccccc--------
Confidence            9999988888876654  889999999984 889999999999999764322111           110000        


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce---eceeEEE
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---SSQIKAS  301 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~  301 (408)
                                  ............+...|.+++|+|++++|++++.|+.|++||+.+++....+..+...   ..+....
T Consensus       232 ------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          232 ------------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             ------------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             ------------ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence                        0011112223456777888888888999999999999999999998766554332211   1111122


Q ss_pred             EcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                      ....+..+++++.++.|++||+.++            +.+..+.+|...|++++|+|                ++++|++
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~~~~l~s  351 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSG------------EQITMLKGHYKTVDCCVFQS----------------NFQELYS  351 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTC------------CEEEEECCCSSCEEEEEEET----------------TTTEEEE
T ss_pred             ecCCCceEEEEecCCEEEEEECcCC------------cceeeeccCCCeEEEEEEcC----------------CCCEEEE
Confidence            2334556777788999999999887            67778889999999999999                9999999


Q ss_pred             EecCCeEEEEeCCCCCCccc
Q psy988          382 ADFNGVIRVFLNKTKPKHSS  401 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~~~~~~  401 (408)
                      ++.||.|++|++.+++....
T Consensus       352 ~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          352 GSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EETTSCEEEEEECC------
T ss_pred             ECCCCeEEEEeCCCCCccCC
Confidence            99999999999999876554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-42  Score=290.80  Aligned_cols=263  Identities=18%  Similarity=0.325  Sum_probs=213.7

Q ss_pred             CCceEEEEeccC-----CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            1 MDKTVRLWHISR-----KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         1 ~Dg~i~vwd~~~-----~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      .|++|++||+.+     +.++..+. |...|.+++|+| ++++|++|+.|++|++||+.+++..  ..+.+|...|.+++
T Consensus        38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~--~~~~~h~~~v~~~~  114 (319)
T 3frx_A           38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETY--QRFVGHKSDVMSVD  114 (319)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE
T ss_pred             CCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCee--EEEccCCCcEEEEE
Confidence            389999999864     23455665 999999999999 9999999999999999999998766  68899999999999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC------CCeEEEeeCCCeEEEEEccC
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG------EDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~  148 (408)
                      |+|++.+|++++.|++|++||++.... .     .   ..+|...+.++.+.|.      +..+++++.|+.|++||+++
T Consensus       115 ~~~~~~~l~s~s~D~~i~vwd~~~~~~-~-----~---~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  185 (319)
T 3frx_A          115 IDKKASMIISGSRDKTIKVWTIKGQCL-A-----T---LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ  185 (319)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTSCEE-E-----E---ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeE-E-----E---EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence            999999999999999999999975422 1     1   1246678999999985      44899999999999999999


Q ss_pred             cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          149 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                      .+....+.+|...  +.+++|+|++++|++++.||.|++||+.+.....            .+. +              
T Consensus       186 ~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~------------~~~-~--------------  236 (319)
T 3frx_A          186 FQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY------------TLS-A--------------  236 (319)
T ss_dssp             TEEEEEECCCCSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE------------EEE-C--------------
T ss_pred             chhheeecCCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------Eec-C--------------
Confidence            8888888877654  8899999999999999999999999997643221            111 1              


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec------cceeceeEEEE
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY------VNVSSQIKASF  302 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~  302 (408)
                                           ...+.+++|+|++.++++++.+ .+++|++..+.....+..+      .....+.+++|
T Consensus       237 ---------------------~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  294 (319)
T 3frx_A          237 ---------------------QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW  294 (319)
T ss_dssp             ---------------------CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred             ---------------------CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence                                 1235556666666667776654 5999999988777666532      12346789999


Q ss_pred             cCCCCEEEEecCCceEEEeecccc
Q psy988          303 SHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       303 s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +|||++|++|+.||.|++||+.+.
T Consensus       295 spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          295 SADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCEEEEeecCceEEEEEEeec
Confidence            999999999999999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-42  Score=295.37  Aligned_cols=295  Identities=13%  Similarity=0.071  Sum_probs=216.2

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCC-------cEEEEecCCCCcee--------eeeecCCceeeEEEEEecCCCEEEE
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDG-------KLRLWNIPDKKVAV--------WNEVEGQTKLITAANFCENGKFAVV   84 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg-------~i~iw~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~   84 (408)
                      ...-+|++++|+| ++++|++|+.+.       .|++|++..+....        ...+.+|...|.++++  +++.+++
T Consensus        12 ~~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~   88 (365)
T 4h5i_A           12 NVGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILV   88 (365)
T ss_dssp             ECSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEE
T ss_pred             CCCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEE
Confidence            3456899999999 999999997543       59999997654321        1246678888888766  4556666


Q ss_pred             E-----------ecCCEEEEEeccCCeeeEEE-EEeeccccccCCCCeEEEeeCCCCCeEEEe--eCCCeEEEEEccCcc
Q psy988           85 G-----------SYDGRCIFYTTDQLKYHTQI-HVRSTRGKNATGRKISGIEPMPGEDKILVT--SNDSRIRLYDLRDLN  150 (408)
Q Consensus        85 ~-----------~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~  150 (408)
                      +           +.|+.+++|++......... ..........+...+.+++|+|||++++++  +.|+.|++||+++++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence            5           45788999998765443322 222222333445578999999999998765  468999999999998


Q ss_pred             cceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      .+..+.. .  ..+.+++|+|+|+++++++.++ +++|+..++.....          .....|...+.+++|+|+    
T Consensus       169 ~~~~~~~-~--~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~----------~~~~~~~~~v~~v~fspd----  230 (365)
T 4h5i_A          169 EKFEIET-R--GEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIAR----------KTDFDKNWSLSKINFIAD----  230 (365)
T ss_dssp             EEEEEEC-S--SCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEE----------ECCCCTTEEEEEEEEEET----
T ss_pred             EEEEeCC-C--CceEEEEEccCCceEEecccee-EEEEEeccCcceee----------eecCCCCCCEEEEEEcCC----
Confidence            8877753 2  3488999999999999998654 66666554322211          122344555555555555    


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC----eEEEEEcCCCeee----eEEeeccceeceeEEEE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS----RIRLYDLRDLNLS----CKYKGYVNVSSQIKASF  302 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~  302 (408)
                                                     ++++++++.|+    .+++|++......    ..+.+|  ...|++++|
T Consensus       231 -------------------------------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~  277 (365)
T 4h5i_A          231 -------------------------------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR--FKGITSMDV  277 (365)
T ss_dssp             -------------------------------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS--CSCEEEEEE
T ss_pred             -------------------------------CCEEEEEecCCcceeEEeecccccceecceeeeeecCC--CCCeEeEEE
Confidence                                           45556666665    6888998766532    233343  447999999


Q ss_pred             cCCCCEEEEecCCceEEEeeccccCccccccccCcccccee-eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          303 SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       303 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                      +|||++||+|+.|+.|+|||+.++            +++.. +.+|...|++++|+|                ||++|||
T Consensus       278 Spdg~~lasgs~D~~V~iwd~~~~------------~~~~~~~~gH~~~V~~v~fSp----------------dg~~laS  329 (365)
T 4h5i_A          278 DMKGELAVLASNDNSIALVKLKDL------------SMSKIFKQAHSFAITEVTISP----------------DSTYVAS  329 (365)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTTT------------EEEEEETTSSSSCEEEEEECT----------------TSCEEEE
T ss_pred             CCCCCceEEEcCCCEEEEEECCCC------------cEEEEecCcccCCEEEEEECC----------------CCCEEEE
Confidence            999999999999999999999886            55555 478999999999999                9999999


Q ss_pred             EecCCeEEEEeCCCC
Q psy988          382 ADFNGVIRVFLNKTK  396 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~  396 (408)
                      |+.|++||||+++..
T Consensus       330 ~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          330 VSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSEEEEEECCTT
T ss_pred             EeCCCeEEEEEcCCC
Confidence            999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-42  Score=325.69  Aligned_cols=354  Identities=16%  Similarity=0.207  Sum_probs=280.9

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIF   93 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   93 (408)
                      ..+.+. |.+.|.+++|+| ++++|++++.||.|++||+.+++..  ..+.+|...|.+++|+|++++|++++.||.|++
T Consensus         5 ~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEV--RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             cceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceE--EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            344454 999999999999 9999999999999999999988766  688899999999999999999999999999999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccccccceEEEEec-
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSSQIKASFSH-  171 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-  171 (408)
                      ||+.+++......        .|...|.+++|+|++++|++++.||.|++||++++ .....+..+..  .+.+++|+| 
T Consensus        82 w~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--~v~~~~~~p~  151 (814)
T 3mkq_A           82 FNYNTGEKVVDFE--------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--FVMCVAFNPK  151 (814)
T ss_dssp             EETTTCCEEEEEE--------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS--CEEEEEEETT
T ss_pred             EECCCCcEEEEEe--------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC--cEEEEEEEcC
Confidence            9999887654432        45678999999999999999999999999999886 55556666554  488999999 


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc-cccceEEEEEEeC--CcceeeeecCCC-------CCCC
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAVVTCAVFAP--CPELIIAQMEPD-------KSES  241 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~~-------~~~~  241 (408)
                      +++.|++++.||.|++||+..+...            ..+. .+...+.+++|+|  ++..++++..+.       ....
T Consensus       152 ~~~~l~~~~~dg~v~vwd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          152 DPSTFASGCLDRTVKVWSLGQSTPN------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             EEEEEEEEETTSEEEEEETTCSSCS------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcce------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            8899999999999999998654322            2223 3347889999999  888888765443       2333


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC--EEEEecCCceEE
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK--YIVSGSENQCIY  319 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~  319 (408)
                      ....+..+...|.+++|+|+++++++++.||.|++||+.+++....+..+..  .+.+++|+|+++  +++++ .++.+.
T Consensus       220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~~~~~~  296 (814)
T 3mkq_A          220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-FDNGFT  296 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-eCCCEE
Confidence            4555667889999999999999999999999999999999999888887655  788999999987  35555 466788


Q ss_pred             EeeccccCcccccccc-------------------------------CccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988          320 IWKTHHDYAKFSSVRR-------------------------------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       320 iw~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                      +|++..........+.                               ........+..+...+.+++|+|+|+++++...
T Consensus       297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  376 (814)
T 3mkq_A          297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGD  376 (814)
T ss_dssp             EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEET
T ss_pred             EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecC
Confidence            8987654322211000                               000111223445667899999999998887663


Q ss_pred             CC--------------------CCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          369 PD--------------------KSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       369 ~~--------------------~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      ..                    .|++++++|++++.||.|++|+...+
T Consensus       377 ~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~  424 (814)
T 3mkq_A          377 GEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE  424 (814)
T ss_dssp             TEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE
T ss_pred             CEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Confidence            32                    67889999999999999999976443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-41  Score=297.43  Aligned_cols=287  Identities=15%  Similarity=0.231  Sum_probs=232.6

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      ++.|+||+ + ++||+|. |++|+|||..+++......+.+|...|++++|+|+|++|++|+.||.|++||+++++....
T Consensus       108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            56799997 4 5777765 8999999999998876556778889999999999999999999999999999999876443


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  183 (408)
                      .        ..|...+.++.++  +..|++++.|+.+++||..... .+..+.+|...  +..+.++|+++++++++.|+
T Consensus       185 ~--------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~--~~~~~~~~~g~~l~s~~~D~  252 (420)
T 4gga_A          185 M--------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLASGGNDN  252 (420)
T ss_dssp             E--------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETTS
T ss_pred             E--------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc--eeeeeecCCCCeeeeeeccc
Confidence            3        2456788888774  6799999999999999998654 34455665544  77899999999999999999


Q ss_pred             eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC
Q psy988          184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED  263 (408)
Q Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (408)
                      .+++|+...+...        ...+.....|...|.+++|+|.+..+++                               
T Consensus       253 ~v~i~~~~~~~~~--------~~~~~~~~~~~~~V~~~~~~p~~~~~la-------------------------------  293 (420)
T 4gga_A          253 LVNVWPSAPGEGG--------WVPLQTFTQHQGAVKAVAWCPWQSNVLA-------------------------------  293 (420)
T ss_dssp             CEEEEESSCCSSC--------SCCSEEECCCSSCEEEEEECTTCTTEEE-------------------------------
T ss_pred             cceEEeecccccc--------ceeeeeecccCCceeeeeeCCCcccEEE-------------------------------
Confidence            9999998764321        1223344556667777777766554421                               


Q ss_pred             eEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec--CCceEEEeeccccCccccccccCccccc
Q psy988          264 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQCIYIWKTHHDYAKFSSVRRDRNDFW  341 (408)
Q Consensus       264 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~  341 (408)
                       .++|+.|++|++||+.++++...+..+.   .+.++.|+|+++.+++++  .|+.|+|||+.++            +++
T Consensus       294 -~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~------------~~v  357 (420)
T 4gga_A          294 -TGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKV  357 (420)
T ss_dssp             -EEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEE
T ss_pred             -EEeecCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC------------cEE
Confidence             2345789999999999999988877643   577899999999988754  7999999999887            678


Q ss_pred             eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ..+.+|.+.|++++|+|                ||++|+||+.||+|+|||+....
T Consensus       358 ~~l~gH~~~V~~l~~sp----------------dg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          358 AELKGHTSRVLSLTMSP----------------DGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEECCCSSCEEEEEECT----------------TSSCEEEEETTTEEEEECCSCSS
T ss_pred             EEEcCCCCCEEEEEEcC----------------CCCEEEEEecCCeEEEEECCCCC
Confidence            88999999999999999                99999999999999999997654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.7e-43  Score=300.37  Aligned_cols=280  Identities=14%  Similarity=0.222  Sum_probs=226.7

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----ceeeeeecCCceeeEEEE
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-----VAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~   74 (408)
                      .||+|+|||+.+++....+. |...|.+++|+| ++++|++|+.|+.|++|++.+..     ......+.+|.+.|.++.
T Consensus        86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~  164 (380)
T 3iz6_a           86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ  164 (380)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred             CCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence            38999999999999999888 999999999999 99999999999999999997532     223356889999999999


Q ss_pred             EecC-CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEcc-Cccc
Q psy988           75 FCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLR-DLNL  151 (408)
Q Consensus        75 ~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~  151 (408)
                      |+|+ +..|++++.|++|++||+.+++....+.   .....+|...|.++.|++ +++.|++|+.|+.|++||++ ..+.
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~  241 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFG---SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA  241 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC---CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEee---cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence            9997 4579999999999999999887654332   122245678999999987 78899999999999999998 4566


Q ss_pred             ceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          152 SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      ...+.+|...  +.+++|+|++++|++++.||.|++||++++.....            +..+          +.     
T Consensus       242 ~~~~~~h~~~--v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~------------~~~~----------~~-----  292 (380)
T 3iz6_a          242 VRTYHGHEGD--INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV------------YNRE----------PD-----  292 (380)
T ss_dssp             CEEECCCSSC--CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE------------ECCC----------CS-----
T ss_pred             eEEECCcCCC--eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE------------eccc----------cc-----
Confidence            7777777654  78999999999999999999999999976533211            0000          00     


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee--ccceeceeEEEEcCCCCEE
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--YVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l  309 (408)
                                   ....+...+.+++|+|++++|++|+.||.|++||+.+++....+..  ..+...|.+++|+|+|++|
T Consensus       293 -------------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          293 -------------RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             -------------SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             -------------ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence                         0001223477888899999999999999999999999888877732  1234478999999999999


Q ss_pred             EEecCCceEEEeecccc
Q psy988          310 VSGSENQCIYIWKTHHD  326 (408)
Q Consensus       310 ~~~~~dg~i~iw~~~~~  326 (408)
                      ++|+.||.|++|++...
T Consensus       360 ~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          360 CTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEECTTSCEEEEECCSS
T ss_pred             EEeeCCCCEEEEecCCC
Confidence            99999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.8e-41  Score=297.56  Aligned_cols=297  Identities=17%  Similarity=0.294  Sum_probs=248.5

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|++||+.+++++..+. |.+.|.+++|++   ++|++|+.||+|++||+.+++..  ..+.+|...|.++.|+  +
T Consensus       137 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~  209 (445)
T 2ovr_B          137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLH--E  209 (445)
T ss_dssp             TTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEE--T
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEE--EEECCCCCcEEEEEec--C
Confidence            38999999999999998887 999999999974   58999999999999999998766  6888999999999995  5


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      +.+++++.||.|++||+.+++......        .|...+.++.+  +++.+++++.||.|++||+++++.+..+..+.
T Consensus       210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~--------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  279 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIETGQCLHVLM--------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT  279 (445)
T ss_dssp             TEEEEEETTSEEEEEESSSCCEEEEEE--------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEc--------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence            789999999999999999877654432        45678999999  68899999999999999999999888888766


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ..  +.++.|  +++++++++.||.|++||++++..            ...+..|...+.++.++               
T Consensus       280 ~~--v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~------------~~~~~~~~~~v~~~~~~---------------  328 (445)
T 2ovr_B          280 NR--VYSLQF--DGIHVVSGSLDTSIRVWDVETGNC------------IHTLTGHQSLTSGMELK---------------  328 (445)
T ss_dssp             SC--EEEEEE--CSSEEEEEETTSCEEEEETTTCCE------------EEEECCCCSCEEEEEEE---------------
T ss_pred             Cc--eEEEEE--CCCEEEEEeCCCeEEEEECCCCCE------------EEEEcCCcccEEEEEEe---------------
Confidence            54  667777  889999999999999999976432            23344455555554442               


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-ceeceeEEEEcCCCCEEEEecCCceE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-NVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                                            ++++++++.||.|++||+++++.+..+..+. +...+.+++|+  +++|++|+.||.|
T Consensus       329 ----------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v  384 (445)
T 2ovr_B          329 ----------------------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV  384 (445)
T ss_dssp             ----------------------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             ----------------------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence                                  4568999999999999999999998887632 34578888885  6899999999999


Q ss_pred             EEeeccccCccccccccCccccceee-----eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe----EE
Q psy988          319 YIWKTHHDYAKFSSVRRDRNDFWEGI-----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV----IR  389 (408)
Q Consensus       319 ~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~----v~  389 (408)
                      ++||+.++            +.+..+     .+|.+.|++++|+|                ++.+|++|+.||+    |.
T Consensus       385 ~iwd~~~~------------~~~~~~~~~~~~~~~~~v~~~~~s~----------------~~~~la~~~~dg~~~~~l~  436 (445)
T 2ovr_B          385 KLWDLKTG------------EFIRNLVTLESGGSGGVVWRIRASN----------------TKLVCAVGSRNGTEETKLL  436 (445)
T ss_dssp             EEEETTTC------------CEEEEEEECTTGGGTCEEEEEEECS----------------SEEEEEEECSSSSSCCEEE
T ss_pred             EEEECCCC------------ceeeeeeccccCCCCceEEEEEecC----------------CEEEEEEcccCCCCccEEE
Confidence            99999987            344444     46889999999999                9999999999998    99


Q ss_pred             EEeCCCCC
Q psy988          390 VFLNKTKP  397 (408)
Q Consensus       390 iw~~~~~~  397 (408)
                      +||+....
T Consensus       437 v~df~~~~  444 (445)
T 2ovr_B          437 VLDFDVDM  444 (445)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99998643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-43  Score=308.47  Aligned_cols=304  Identities=13%  Similarity=0.235  Sum_probs=235.6

Q ss_pred             eCCceEEEEEcCCCCC-EEEEE----------eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC
Q psy988           21 HIDFVTAICFHPRDDR-YFLSG----------SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG   89 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   89 (408)
                      +...|.+++|+| +++ +|++|          +.|+.|++||+.++..........|...|.+++|+|++++|++++.||
T Consensus        11 ~~~~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC
Confidence            445789999999 765 99999          889999999998875331123346889999999999999999999999


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcc------cceee-cCcccc
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLN------LSCKY-KGYVNV  161 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~-~~~~~~  161 (408)
                      .|++|++.+...... ....   ...|...|.+++|+|+ +++|++++.|+.|++||+++++      ....+ ....+.
T Consensus        90 ~v~vw~~~~~~~~~~-~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           90 SLELYSTNEANNAIN-SMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             CEEEECCSSTTSCCC-EEEE---CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             eEEEeeccccccccc-chhh---ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            999999987211100 0111   2346679999999998 8999999999999999999876      32222 111233


Q ss_pred             ccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          162 SSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       162 ~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      ..+.+++|+|+ +.+|++++.||.|++||++++.....            +..+..                        
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~------------------------  209 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH------------LSYTSP------------------------  209 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEE------------ECCCCC------------------------
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceE------------Eecccc------------------------
Confidence            45889999999 78999999999999999976433211            111100                        


Q ss_pred             CceeeecCCCceeeeeccCCCC-CeEEEecCCC---eEEEEEcCCC-eeeeEEe-eccceeceeEEEEcC-CCCEEEEec
Q psy988          241 STGYVLNATGRKISGIEPMPGE-DKILVTSNDS---RIRLYDLRDL-NLSCKYK-GYVNVSSQIKASFSH-DGKYIVSGS  313 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~  313 (408)
                           ...+...+.+++|+|++ .++++++.|+   .|++||++++ ++...+. +|..  .+.+++|+| ++++|++++
T Consensus       210 -----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~  282 (416)
T 2pm9_A          210 -----NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSG  282 (416)
T ss_dssp             -----SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEE
T ss_pred             -----ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEe
Confidence                 01224455566666665 4688899998   9999999986 5666666 5544  789999999 999999999


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcc-cEEEEEecCCeEEEEe
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTG-YVLVSADFNGVIRVFL  392 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iw~  392 (408)
                      .||.|++||+.++            +.+..+.+|...|.+++|+|                ++ ++|++++.||.|++|+
T Consensus       283 ~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~~~~~l~s~~~d~~i~iw~  334 (416)
T 2pm9_A          283 RDNTVLLWNPESA------------EQLSQFPARGNWCFKTKFAP----------------EAPDLFACASFDNKIEVQT  334 (416)
T ss_dssp             SSSEEEEECSSSC------------CEEEEEECSSSCCCCEEECT----------------TCTTEEEECCSSSEEEEEE
T ss_pred             CCCCEEEeeCCCC------------ccceeecCCCCceEEEEECC----------------CCCCEEEEEecCCcEEEEE
Confidence            9999999999886            56778889999999999999                77 8999999999999999


Q ss_pred             CCCCCCcc
Q psy988          393 NKTKPKHS  400 (408)
Q Consensus       393 ~~~~~~~~  400 (408)
                      +.+.+...
T Consensus       335 ~~~~~~~~  342 (416)
T 2pm9_A          335 LQNLTNTL  342 (416)
T ss_dssp             SCCCCCSS
T ss_pred             ccCCCCCc
Confidence            98876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-41  Score=288.99  Aligned_cols=266  Identities=17%  Similarity=0.262  Sum_probs=208.4

Q ss_pred             CCceEEEEeccCC-------eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE
Q psy988            1 MDKTVRLWHISRK-------ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA   72 (408)
Q Consensus         1 ~Dg~i~vwd~~~~-------~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~   72 (408)
                      .|++|+|||+.+.       .+...+. |...|.+++|+| ++.+|++|+.|++|++||+.+++..  ..+.+|...|.+
T Consensus        47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~  123 (343)
T 2xzm_R           47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTY--KRFVGHQSEVYS  123 (343)
T ss_dssp             TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEE--EEEECCCSCEEE
T ss_pred             CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEE--EEEcCCCCcEEE
Confidence            3899999999753       3455554 999999999999 9999999999999999999998766  688899999999


Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC----------CeEEEeeCCCeEE
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE----------DKILVTSNDSRIR  142 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~  142 (408)
                      ++|+|++++|++++.|+.|++||+.....      ........|...|.+++|+|++          .+|++++.|+.|+
T Consensus       124 v~~sp~~~~l~s~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          124 VAFSPDNRQILSAGAEREIKLWNILGECK------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             EEECSSTTEEEEEETTSCEEEEESSSCEE------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             EEECCCCCEEEEEcCCCEEEEEeccCCce------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence            99999999999999999999999974321      1122233567789999999987          6899999999999


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      +||. +.+....+..|..  .+.+++|+|++++|++++.||.|++||+......           ... ..         
T Consensus       198 iwd~-~~~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-----------~~~-~~---------  253 (343)
T 2xzm_R          198 VWNT-NFQIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-----------QRE-FD---------  253 (343)
T ss_dssp             EEET-TTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-----------SEE-EE---------
T ss_pred             EEcC-CCceeEEEcCccc--cceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-----------cee-ec---------
Confidence            9994 4555566666654  4889999999999999999999999998432100           000 01         


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee--EEeec---------
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC--KYKGY---------  291 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~---------  291 (408)
                                                +...|.+++|+|++.++++ +.|+.|++||+.+++...  .+...         
T Consensus       254 --------------------------~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T 2xzm_R          254 --------------------------AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK  306 (343)
T ss_dssp             --------------------------CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred             --------------------------CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence                                      1223555666666666655 457789999998876544  33311         


Q ss_pred             cceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          292 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .+...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            22346889999999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.7e-41  Score=282.66  Aligned_cols=266  Identities=18%  Similarity=0.300  Sum_probs=221.4

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||.|++||+.+++....+. |...|.+++|+| ++++|++++.|+.|++||+.+++..  ..+.+|...|.+++|+|++
T Consensus        43 ~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~  119 (312)
T 4ery_A           43 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQS  119 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSS
T ss_pred             CCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEE--EEEcCCCCCEEEEEEcCCC
Confidence            38999999999999988887 999999999999 9999999999999999999998866  6888999999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ++|++++.||.|++||+++.+....+        ..|..+|.+++|+|++++|++++.||.|++||+++++.+..+....
T Consensus       120 ~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  191 (312)
T 4ery_A          120 NLIVSGSFDESVRIWDVKTGKCLKTL--------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD  191 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             CEEEEEeCCCcEEEEECCCCEEEEEe--------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC
Confidence            99999999999999999987654332        2455789999999999999999999999999999988776654332


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                       ...+..++|+|++++|++++.||.|++||++++...            ..+..|.....                    
T Consensus       192 -~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~--------------------  238 (312)
T 4ery_A          192 -NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL------------KTYTGHKNEKY--------------------  238 (312)
T ss_dssp             -CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE------------EEECSSCCSSS--------------------
T ss_pred             -CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE------------EEEEecCCceE--------------------
Confidence             234678999999999999999999999999764322            11222211100                    


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec--CCce
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQC  317 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~  317 (408)
                                  .+......+++.+|++++.||.|++||+.+++.+..+.+|..  .+.+++|+|++++|++++  .|+.
T Consensus       239 ------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~  304 (312)
T 4ery_A          239 ------------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKT  304 (312)
T ss_dssp             ------------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCC
T ss_pred             ------------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCcc
Confidence                        011112235678899999999999999999999999988765  789999999999999986  6999


Q ss_pred             EEEeecc
Q psy988          318 IYIWKTH  324 (408)
Q Consensus       318 i~iw~~~  324 (408)
                      |++|+.+
T Consensus       305 i~~W~~d  311 (312)
T 4ery_A          305 IKLWKSD  311 (312)
T ss_dssp             EEEEECC
T ss_pred             EEEecCC
Confidence            9999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-41  Score=283.48  Aligned_cols=276  Identities=15%  Similarity=0.247  Sum_probs=201.9

Q ss_pred             CCceEEEEeccCC--eeEeEE--E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC-----CceeeeeecCCceee
Q psy988            1 MDKTVRLWHISRK--ECLCCF--Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK-----KVAVWNEVEGQTKLI   70 (408)
Q Consensus         1 ~Dg~i~vwd~~~~--~~~~~~--~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~v   70 (408)
                      .|++|++||+.++  +.+..+  . |.+.|.+++|+| ++++|++|+.|++|+||++...     .......+.+|...|
T Consensus        32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V  110 (330)
T 2hes_X           32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV  110 (330)
T ss_dssp             SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred             CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence            3899999999875  455555  3 999999999999 9999999999999999998542     122346788999999


Q ss_pred             EEEEEecCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988           71 TAANFCENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  149 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  149 (408)
                      .+++|+|++++|++++.|++|++||+.... .....  .   ....|...|.+++|+|++.+|++++.|+.|++||..++
T Consensus       111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~--~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI--S---VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE--E---EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE--E---EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999999999999999999995432 11111  1   12356679999999999999999999999999999876


Q ss_pred             --ccceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          150 --NLSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       150 --~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                        +++..+.+|...  +.+++|+|+  +.+|++++.|+.|++||+..+....                 .......    
T Consensus       186 ~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-----------------~~~~~~~----  242 (330)
T 2hes_X          186 DWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-----------------QQEWVCE----  242 (330)
T ss_dssp             EEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS-----------------CEEEEEE----
T ss_pred             CeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc-----------------cceeEEe----
Confidence              466677776654  889999998  6789999999999999986431100                 0000000    


Q ss_pred             CcceeeeecCCCCCCCceeeec-CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee--eeEE-eeccceeceeEEE
Q psy988          226 CPELIIAQMEPDKSESTGYVLN-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCKY-KGYVNVSSQIKAS  301 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~v~~~~  301 (408)
                                        ..+. .|...|.+++|++++ +|++++.||.|++||..+++.  .... .+|. ...+.+++
T Consensus       243 ------------------~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~-~~~v~~v~  302 (330)
T 2hes_X          243 ------------------AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG-VYEINVVK  302 (330)
T ss_dssp             ------------------EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT-TSCEEEEE
T ss_pred             ------------------eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc-cceEEEEE
Confidence                              0111 255567777777554 788999999999999987743  2222 2232 12688999


Q ss_pred             EcC--CCCEEEEecCCceEEEeeccc
Q psy988          302 FSH--DGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       302 ~s~--~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      |+|  ++++|++|+.||.|++|++..
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC--
T ss_pred             EecCCCceEEEEecCCCcEEEEEecc
Confidence            999  789999999999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.6e-41  Score=298.69  Aligned_cols=303  Identities=17%  Similarity=0.243  Sum_probs=242.5

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe--c
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC--E   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~   77 (408)
                      .||+|++||+.+++.+..+. |.+.|.+++|+| ++ +|++|+.||+|++||+.+++..  ..+.+|...|.+++|+  +
T Consensus       140 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCT--HVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEEESS
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEE--EEECCCCCccEEEEEecCC
Confidence            38999999999999999987 999999999999 66 8999999999999999988765  6888999999999998  5


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEee---------------ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS---------------TRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      +++++++++.||.|++||+.+...........               .....+|...+.++  +++++++++++.||.|+
T Consensus       216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~  293 (464)
T 3v7d_B          216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI  293 (464)
T ss_dssp             SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEE
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEE
Confidence            78999999999999999998765433211100               11123455677766  56789999999999999


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      +||+++++.+..+.+|...  +.+++|+|+++++++++.||.|++||++++.            .+..+..|...+.++.
T Consensus       294 vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~  359 (464)
T 3v7d_B          294 VWDVAQMKCLYILSGHTDR--IYSTIYDHERKRCISASMDTTIRIWDLENGE------------LMYTLQGHTALVGLLR  359 (464)
T ss_dssp             EEETTTTEEEEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEE
T ss_pred             EEECCCCcEEEEecCCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------EEEEEeCCCCcEEEEE
Confidence            9999999988888876654  8899999999999999999999999997643            2334455555666555


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF  302 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  302 (408)
                      ++                                     +++|++++.||.|++||+.+++...... +.  ..+..++|
T Consensus       360 ~~-------------------------------------~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~--~~~~~~~~  399 (464)
T 3v7d_B          360 LS-------------------------------------DKFLVSAAADGSIRGWDANDYSRKFSYH-HT--NLSAITTF  399 (464)
T ss_dssp             EC-------------------------------------SSEEEEEETTSEEEEEETTTCCEEEEEE-CT--TCCCEEEE
T ss_pred             Ec-------------------------------------CCEEEEEeCCCcEEEEECCCCceeeeec-CC--CCccEEEE
Confidence            54                                     3568999999999999999887665553 22  24567899


Q ss_pred             cCCCCEEEEecCCceEEEeeccccCccccccccCcccccee-eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          303 SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       303 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                      +|++++|++|+ ||.|++||+.++            +.+.. +..|...|.+++|++                 ..++++
T Consensus       400 ~~~~~~l~~~~-dg~i~iwd~~~g------------~~~~~~~~~~~~~v~~v~~~~-----------------~~l~~~  449 (464)
T 3v7d_B          400 YVSDNILVSGS-ENQFNIYNLRSG------------KLVHANILKDADQIWSVNFKG-----------------KTLVAA  449 (464)
T ss_dssp             EECSSEEEEEE-TTEEEEEETTTC------------CEEESCTTTTCSEEEEEEEET-----------------TEEEEE
T ss_pred             EeCCCEEEEec-CCeEEEEECCCC------------cEEehhhccCCCcEEEEEecC-----------------CEEEEE
Confidence            99999999998 899999999987            34443 556889999999974                 567777


Q ss_pred             EecCCeEEEEeC
Q psy988          382 ADFNGVIRVFLN  393 (408)
Q Consensus       382 ~~~dg~v~iw~~  393 (408)
                      ++.||.+.+|-+
T Consensus       450 ~~~~g~~~i~~l  461 (464)
T 3v7d_B          450 VEKDGQSFLEIL  461 (464)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEeCCeEEEEEe
Confidence            788887766543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-41  Score=294.16  Aligned_cols=285  Identities=16%  Similarity=0.231  Sum_probs=223.3

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  103 (408)
                      +.+++|++   ..+++++.|+.|++|++.+++...  .+. .|...|.+++|+|++++|++++.||.|++||+.+.+...
T Consensus        96 ~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~--~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  170 (401)
T 4aez_A           96 LNLLDWSN---LNVVAVALERNVYVWNADSGSVSA--LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR  170 (401)
T ss_dssp             CBCEEECT---TSEEEEEETTEEEEEETTTCCEEE--EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEeecC---CCEEEEECCCeEEEeeCCCCcEeE--eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE
Confidence            44466654   458888899999999999988763  333 388999999999999999999999999999999876544


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                      ...        .|...|.+++|  +++.+++++.||.|++||++. ......+..|..  .+.+++|+|++++|++++.|
T Consensus       171 ~~~--------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          171 TMA--------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             EEC--------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             Eec--------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC--CeeEEEEcCCCCEEEEEeCC
Confidence            332        46679999999  467999999999999999984 555666666554  48899999999999999999


Q ss_pred             ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988          183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE  262 (408)
Q Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (408)
                      |.|++||++++.            ....+..|...+.+++|+|++..+                                
T Consensus       239 ~~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~l--------------------------------  274 (401)
T 4aez_A          239 NVVQIWDARSSI------------PKFTKTNHNAAVKAVAWCPWQSNL--------------------------------  274 (401)
T ss_dssp             SCEEEEETTCSS------------EEEEECCCSSCCCEEEECTTSTTE--------------------------------
T ss_pred             CeEEEccCCCCC------------ccEEecCCcceEEEEEECCCCCCE--------------------------------
Confidence            999999997532            222334455555555555544333                                


Q ss_pred             CeEEEec--CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE--ecCCceEEEeeccccCccccccccCcc
Q psy988          263 DKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS--GSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       263 ~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                        +++++  .|+.|++||+.+++.+..+..   ...+.+++|+|++++|++  |+.||.|++|++.++..          
T Consensus       275 --l~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~----------  339 (401)
T 4aez_A          275 --LATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL----------  339 (401)
T ss_dssp             --EEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE----------
T ss_pred             --EEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc----------
Confidence              45544  799999999999998888764   236889999999999998  66899999999987521          


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccc
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSS  401 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  401 (408)
                      .....+.+|...|.+++|+|                ++++|++++.||.|++|++.+++....
T Consensus       340 ~~~~~~~~h~~~v~~~~~s~----------------dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          340 TKQVDIPAHDTRVLYSALSP----------------DGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEEEEECCSSCCCEEEECT----------------TSSEEEEECTTSEEEEEECCC------
T ss_pred             eeEEEecCCCCCEEEEEECC----------------CCCEEEEEeCCCcEEEEECCCCccccc
Confidence            23344678999999999999                999999999999999999998875543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=292.70  Aligned_cols=309  Identities=10%  Similarity=0.112  Sum_probs=239.8

Q ss_pred             EEEeccCCeeEeEEE-eCCceEEEEEcCCC---CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            6 RLWHISRKECLCCFQ-HIDFVTAICFHPRD---DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         6 ~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      ..|+....+.+..+. |.+.|++++|+| +   +++|++|+.||.|++||+.+........+.+|...|.+++|+|++++
T Consensus        22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  100 (368)
T 3mmy_A           22 TTDNHNPMKDIEVTSSPDDSIGCLSFSP-PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK  100 (368)
T ss_dssp             -CCSSCTTCCEECSSCCSSCEEEEEECC-TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccCCCCCcceeEeccCCCCceEEEEEcC-CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE
Confidence            345555566666665 999999999999 6   69999999999999999998444443678889999999999999999


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEee--CCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP--MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      |++++.||.|++||+++.+.....         .|...|.+++|  +|++.+|++++.||.|++||+++++.+..+..+.
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  171 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQIA---------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE  171 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred             EEEEcCCCcEEEEEcCCCCceeec---------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence            999999999999999988754321         35679999999  8999999999999999999999998888877654


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      .   +.++.+  .+..+++++.++.+++|+++..........          ..+.....++.+.++...          
T Consensus       172 ~---~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----------  226 (368)
T 3mmy_A          172 R---CYCADV--IYPMAVVATAERGLIVYQLENQPSEFRRIE----------SPLKHQHRCVAIFKDKQN----------  226 (368)
T ss_dssp             C---EEEEEE--ETTEEEEEEGGGCEEEEECSSSCEEEEECC----------CSCSSCEEEEEEEECTTS----------
T ss_pred             C---ceEEEe--cCCeeEEEeCCCcEEEEEeccccchhhhcc----------ccccCCCceEEEcccCCC----------
Confidence            2   334444  456889999999999999976433322111          111222333333322211          


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---eeeeEEeeccce----------eceeEEEEcCCC
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNV----------SSQIKASFSHDG  306 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~  306 (408)
                                           ....+++++.|+.|++||++..   +....+..|...          ..+.+++|+|++
T Consensus       227 ---------------------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  285 (368)
T 3mmy_A          227 ---------------------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH  285 (368)
T ss_dssp             ---------------------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred             ---------------------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence                                 0122889999999999999987   456666665431          158999999999


Q ss_pred             CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC
Q psy988          307 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG  386 (408)
Q Consensus       307 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  386 (408)
                      ++|++|+.||.|++||+.++            +++..+.+|...|++++|+|                +|++|++++.|+
T Consensus       286 ~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~----------------~g~~l~~~s~d~  337 (368)
T 3mmy_A          286 GTLATVGSDGRFSFWDKDAR------------TKLKTSEQLDQPISACCFNH----------------NGNIFAYASSYD  337 (368)
T ss_dssp             CCEEEEETTSCEEEEETTTT------------EEEEECCCCSSCEEEEEECT----------------TSSCEEEEECCC
T ss_pred             CEEEEEccCCeEEEEECCCC------------cEEEEecCCCCCceEEEECC----------------CCCeEEEEeccc
Confidence            99999999999999999986            56778889999999999999                999999999998


Q ss_pred             eEEEEeCCCCCC
Q psy988          387 VIRVFLNKTKPK  398 (408)
Q Consensus       387 ~v~iw~~~~~~~  398 (408)
                      ..+.|++...+.
T Consensus       338 ~~~~~~~~~~~~  349 (368)
T 3mmy_A          338 WSKGHEFYNPQK  349 (368)
T ss_dssp             STTCGGGCCTTS
T ss_pred             ccccccccCCCc
Confidence            777666554443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=277.86  Aligned_cols=287  Identities=15%  Similarity=0.243  Sum_probs=227.2

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      .++|+||+ ++ +||+| .|++|+|||+.+++......+.+|...|++++|+|++++|++|+.||+|++|++++++....
T Consensus        28 ~~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSS-GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECT-TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECC-CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            57799998 65 67766 58999999999998875556678899999999999999999999999999999999876554


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceeecCccccccceEEEEecCCCEEEEeecCc
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  183 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  183 (408)
                      ..        .|...+.++.+  ++..+++++.++.+++|+...... ...+.+|..  .+..+.+.+++++|++++.||
T Consensus       105 ~~--------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~  172 (318)
T 4ggc_A          105 MT--------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDN  172 (318)
T ss_dssp             EE--------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEEEETTS
T ss_pred             ec--------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccC--ceEEEEEcCCCCEEEEEecCc
Confidence            33        34456665554  578999999999999999887643 344555544  377889999999999999999


Q ss_pred             eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC
Q psy988          184 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED  263 (408)
Q Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (408)
                      .|++||++++...        .........+...+.++.+.|++..++                                
T Consensus       173 ~i~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------------------------  212 (318)
T 4ggc_A          173 LVNVWPSAPGEGG--------WVPLQTFTQHQGAVKAVAWCPWQSNVL--------------------------------  212 (318)
T ss_dssp             CEEEEESSCBTTB--------SCCSEEECCCCSCEEEEEECTTSTTEE--------------------------------
T ss_pred             ceeEEECCCCccc--------ccceeeecccCCceEEEEecCCCCcEE--------------------------------
Confidence            9999999764321        112233344556667777766655442                                


Q ss_pred             eEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe--cCCceEEEeeccccCccccccccCccccc
Q psy988          264 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG--SENQCIYIWKTHHDYAKFSSVRRDRNDFW  341 (408)
Q Consensus       264 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  341 (408)
                      .+++++.++.|++||............   ...+..+.|+|+++.++++  +.|+.|++||+.++            +++
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~------------~~~  277 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKV  277 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEE
T ss_pred             EEEecCCCCEEEEEecccccccccccc---eeeeeeeeecccccceEEEEEcCCCEEEEEECCCC------------cEE
Confidence            235678899999999998877655443   2367789999999988764  47999999999887            677


Q ss_pred             eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ..+.+|.+.|++++|+|                +|++|+||+.||+|+|||+....
T Consensus       278 ~~l~gH~~~V~~l~~sp----------------dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSP----------------DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEECCCSSCEEEEEECT----------------TSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEcCCCCCEEEEEEcC----------------CCCEEEEEecCCeEEEEECCCCC
Confidence            88999999999999999                99999999999999999997653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-41  Score=285.49  Aligned_cols=291  Identities=13%  Similarity=0.141  Sum_probs=233.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |.++|.+++|+| +|++++++..++.+.+|........  ....+|...|.+++|+|++++|++++ ||.|++|++.+..
T Consensus         8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQ--INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEE--EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECC-CCCEEEeecCCCcEeccccCCcccc--ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence            778899999999 9999999888887777765443332  34557999999999999999999998 9999999998765


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc--ceeecCccccccceEEEEecCCCEEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .........   ...|...+.+++|+|++++|++++.|+.|++||+++++.  ...+..+.  ..+.+++|+|++++|++
T Consensus        84 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           84 NKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISPDSKVCFS  158 (337)
T ss_dssp             CCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECTTSSEEEE
T ss_pred             ceeeeeccc---ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC--CceEEEEECCCCCEEEE
Confidence            332221111   124567899999999999999999999999999998773  33444443  44788999999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      ++.||.|++||++++...            ..+.                                   .+...+.+++|
T Consensus       159 ~~~dg~v~~~d~~~~~~~------------~~~~-----------------------------------~~~~~i~~~~~  191 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLV------------RQFQ-----------------------------------GHTDGASCIDI  191 (337)
T ss_dssp             EETTSCEEEEETTTTEEE------------EEEC-----------------------------------CCSSCEEEEEE
T ss_pred             EeCCCcEEEEeCCCCcee------------eeee-----------------------------------cccCceEEEEE
Confidence            999999999998654221            2222                                   34445666666


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      +|++++|++++.|+.|++||+++++....+..   ...+.+++|+|++++|++++.|+.|++|++.+.            
T Consensus       192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~------------  256 (337)
T 1gxr_A          192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------------  256 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS------------
T ss_pred             CCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC------------
Confidence            66777789999999999999999988777653   336889999999999999999999999999875            


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                       ....+..|...|.+++|+|                ++++|++++.||.|++|++.+++..
T Consensus       257 -~~~~~~~~~~~v~~~~~~~----------------~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          257 -DKYQLHLHESCVLSLKFAY----------------CGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             -CEEEECCCSSCEEEEEECT----------------TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             -CeEEEcCCccceeEEEECC----------------CCCEEEEecCCCcEEEEECCCCeEE
Confidence             2345678999999999999                9999999999999999999988755

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-40  Score=291.62  Aligned_cols=303  Identities=17%  Similarity=0.238  Sum_probs=242.3

Q ss_pred             CceEEEEec----cCCe------eEeEEE-----------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee
Q psy988            2 DKTVRLWHI----SRKE------CLCCFQ-----------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW   60 (408)
Q Consensus         2 Dg~i~vwd~----~~~~------~~~~~~-----------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~   60 (408)
                      ||.|++||+    .+++      ....+.           |.+.|++++|+| ++++|++++.||.|++|| .+++..  
T Consensus        67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~--  142 (425)
T 1r5m_A           67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALL--  142 (425)
T ss_dssp             BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEE--
T ss_pred             CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCee--
Confidence            799999999    8888      455544           467999999999 999999999999999999 444444  


Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc-------cccCCCCeEEEeeCCCCCeEE
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG-------KNATGRKISGIEPMPGEDKIL  133 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~  133 (408)
                      ..+..|...|.+++|+|++++|++++.||.|++||+.+.+............       .......+.++.|+|+ ..++
T Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  221 (425)
T 1r5m_A          143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFV  221 (425)
T ss_dssp             EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEE
T ss_pred             eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEE
Confidence            6788999999999999999999999999999999999887655443221110       0011122888999986 4688


Q ss_pred             EeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccc
Q psy988          134 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  213 (408)
Q Consensus       134 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      +++.+|.|++||+++++....+..+...  +.+++|+|++++|++++.||.|++||++++            .....+..
T Consensus       222 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~  287 (425)
T 1r5m_A          222 IPGPKGAIFVYQITEKTPTGKLIGHHGP--ISVLEFNDTNKLLLSASDDGTLRIWHGGNG------------NSQNCFYG  287 (425)
T ss_dssp             EECGGGCEEEEETTCSSCSEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEECSSSB------------SCSEEECC
T ss_pred             EEcCCCeEEEEEcCCCceeeeeccCCCc--eEEEEECCCCCEEEEEcCCCEEEEEECCCC------------ccceEecC
Confidence            9999999999999999888888766544  789999999999999999999999998754            33345667


Q ss_pred             ccceEEEEEEeCCcceeeeecCCC-------CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---
Q psy988          214 HNAVVTCAVFAPCPELIIAQMEPD-------KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN---  283 (408)
Q Consensus       214 ~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---  283 (408)
                      |...+.++.|+|++ .+++...+.       ........+..+...+.+++|+|++++|++++.||.|++||+++++   
T Consensus       288 ~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~  366 (425)
T 1r5m_A          288 HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS  366 (425)
T ss_dssp             CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred             CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence            88999999999999 665553332       2334445566788899999999999999999999999999999887   


Q ss_pred             -----------------eeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          284 -----------------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       284 -----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                                       .+..+..+.....+.+++|+|++++|++++.||.|++|+++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          367 RSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                             77777776433378999999999999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-40  Score=285.91  Aligned_cols=280  Identities=14%  Similarity=0.147  Sum_probs=224.5

Q ss_pred             CceEEEEeccCCeeEeEEE------eCCceEEEEEcCCC----CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE
Q psy988            2 DKTVRLWHISRKECLCCFQ------HIDFVTAICFHPRD----DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT   71 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~------h~~~v~~~~~sp~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~   71 (408)
                      |+.|++||+.+++.+..+.      |...|.+++|+| +    +++|++|+.||.|++||+.+++..  ..+.+|...|.
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~i~  119 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYVGHGNAIN  119 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEESCCSCEE
T ss_pred             CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEe--eeecCCCCcEE
Confidence            6789999999888777665      557899999999 7    679999999999999999988766  67889999999


Q ss_pred             EEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           72 AANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        72 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +++|+| ++++|++++.||.|++||+++.+.....     .....|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-----GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence            999999 9999999999999999999987654332     1223566799999999999999999999999999999876


Q ss_pred             cceeecC--------------------------ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCC
Q psy988          151 LSCKYKG--------------------------YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  204 (408)
Q Consensus       151 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  204 (408)
                      ....+..                          ..+...+.+++|+  +++|++++.|+.|++||+.+.....       
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~-------  265 (366)
T 3k26_A          195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDI-------  265 (366)
T ss_dssp             HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCG-------
T ss_pred             cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccc-------
Confidence            6544332                          0023447788888  7799999999999999997643211       


Q ss_pred             CccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC--CCeEEEecCCCeEEEEEcCCC
Q psy988          205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDL  282 (408)
Q Consensus       205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~  282 (408)
                          ..+..+...+..                      ...+..+...|.+++|+|+  +++|++++.||.|++||+.++
T Consensus       266 ----~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          266 ----DKIKPSESNVTI----------------------LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             ----GGCCTTCCCEEE----------------------EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             ----cccccCCcchhe----------------------eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence                111112111111                      1223466778899999999  999999999999999999987


Q ss_pred             eee----eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          283 NLS----CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       283 ~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      +..    ..+..|.+...|.+++|+|++++|++++.||.|++||+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          320 DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            643    366776545689999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-40  Score=275.84  Aligned_cols=257  Identities=13%  Similarity=0.242  Sum_probs=196.6

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEecc
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~   97 (408)
                      +|.+.|++++|+| ++++||+|+.|++|+|||+.+........+.+|...|.+++|++  ++++|++++.|++|++||++
T Consensus         7 ~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            7 AHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             SCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             CCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            4999999999999 99999999999999999997654334478999999999999986  38999999999999999998


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCccc--ceeecCccccccceEEEEecC-
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHD-  172 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~-  172 (408)
                      +++.....      ....|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|.  ..+.+++|+|+ 
T Consensus        86 ~~~~~~~~------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~--~~v~~~~~~p~~  157 (297)
T 2pm7_B           86 NGRWSQIA------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVNSASWAPAT  157 (297)
T ss_dssp             SSCBCCCE------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS--SCEEEEEECCCC
T ss_pred             CCceEEEE------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc--CccceEeecCCc
Confidence            76421111      12346678999999997  78999999999999999987642  23344444  34888999996 


Q ss_pred             ------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          173 ------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       173 ------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                                  +++|++|+.|+.|++||++++....        .....+.+|...|.+++|+|++.            
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~--------~~~~~l~~H~~~V~~v~~sp~~~------------  217 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------VLESTLEGHSDWVRDVAWSPTVL------------  217 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEE--------EEEEEECCCSSCEEEEEECCCCS------------
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE--------EEEEEecCCCCceEEEEECCCCC------------
Confidence                        5799999999999999986532110        01223445555555555555420            


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee--e-eEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--S-CKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                          .+.+|++++.|++|++||+++...  . ..+..+.+...+.+++|+|+|++||+++.||.
T Consensus       218 --------------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          218 --------------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             --------------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             --------------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence                                035689999999999999987431  1 22211223457889999999999999999999


Q ss_pred             EEEeeccc
Q psy988          318 IYIWKTHH  325 (408)
Q Consensus       318 i~iw~~~~  325 (408)
                      |++|+...
T Consensus       278 v~lw~~~~  285 (297)
T 2pm7_B          278 VTLWKENL  285 (297)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEECC
Confidence            99999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=294.33  Aligned_cols=323  Identities=12%  Similarity=0.151  Sum_probs=229.4

Q ss_pred             EEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc---------eeeeeecCCc------------eeeEEEEEec
Q psy988           19 FQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV---------AVWNEVEGQT------------KLITAANFCE   77 (408)
Q Consensus        19 ~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~~~   77 (408)
                      +.|.+.|++++|+| ++++||+|+.||.|+||++.+++.         .....+.+|.            ..|.+++|+|
T Consensus        25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            34789999999999 999999999999999999987652         1236788898            8899999999


Q ss_pred             CC--CEEEEEecCCEEEEEeccCCeeeEEE-------------------------------EEe-eccccccCCCCeEEE
Q psy988           78 NG--KFAVVGSYDGRCIFYTTDQLKYHTQI-------------------------------HVR-STRGKNATGRKISGI  123 (408)
Q Consensus        78 ~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~~v~~~  123 (408)
                      ++  .+|++++.|+.|++|++.+.......                               ... .......|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            98  79999999999999999764432100                               000 001124577899999


Q ss_pred             eeCCCCCeEEEeeCCCeEEEEEccC-ccccee-------ecCccccccceEEEEecCC-CEEEEeecCceEEEeeeccce
Q psy988          124 EPMPGEDKILVTSNDSRIRLYDLRD-LNLSCK-------YKGYVNVSSQIKASFSHDG-KYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       124 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  194 (408)
                      +|+|++++|+++ .|+.|++||+++ ++....       +..|  ...+.+++|+|++ ++|++++.||.|++||++++.
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL--TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC--CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc--CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            999999999998 799999999984 333332       2333  3458899999998 999999999999999997643


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                      ...        .....+..|...                       .....+..+...|.+++|+|++++|++++. +.|
T Consensus       261 ~~~--------~~~~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v  308 (447)
T 3dw8_B          261 LCD--------RHSKLFEEPEDP-----------------------SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV  308 (447)
T ss_dssp             SSC--------TTCEEECCC----------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred             ccc--------ceeeEeccCCCc-----------------------cccccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence            110        001122222210                       000111233446777788888888899888 999


Q ss_pred             EEEEcCC-CeeeeEEeeccceec-------------eeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc---
Q psy988          275 RLYDLRD-LNLSCKYKGYVNVSS-------------QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR---  337 (408)
Q Consensus       275 ~i~d~~~-~~~~~~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---  337 (408)
                      ++||+++ ++++..+..|.....             +..++|+|++++|++|+.||.|++||+.++...........   
T Consensus       309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~  388 (447)
T 3dw8_B          309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP  388 (447)
T ss_dssp             EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred             EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence            9999997 888888887753211             33489999999999999999999999987643211000000   


Q ss_pred             -----------------cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          338 -----------------NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       338 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                       .........+...|.+++|+|                ++++||+++.++ +++|.-+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p----------------~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP----------------KENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS----------------SSSEEEEECSSC-EEEEECC
T ss_pred             ccccCCccccccCCcccccccccccccCCceeEEEECC----------------CCCEEEEEecce-eeeeccc
Confidence                             000000113456789999999                999999998775 8888643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-40  Score=281.91  Aligned_cols=283  Identities=14%  Similarity=0.145  Sum_probs=231.7

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-eeeeeecCCceeeEEEEEecCCC-EEEEEecCCEEEEEec-
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-AVWNEVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTT-   96 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~-   96 (408)
                      .|.+.|++++|+| ++++|++++.||.|++|++.++.. .....+..|...|.+++|+|+++ +|++++.||.|++||+ 
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            3999999999999 999999999999999999988761 11245568999999999999999 9999999999999999 


Q ss_pred             cCCeeeEEEEEeecccccc--CCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---------cccceeecCccccccce
Q psy988           97 DQLKYHTQIHVRSTRGKNA--TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---------LNLSCKYKGYVNVSSQI  165 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~  165 (408)
                      .+.+.      ..   ...  |...|.+++|+| ++.+++++.|+.|++||+++         ++++..+.   ....+.
T Consensus        88 ~~~~~------~~---~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~  154 (342)
T 1yfq_A           88 GSPSF------QA---LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIF  154 (342)
T ss_dssp             SSSSE------EE---CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEE
T ss_pred             cCCce------Ee---ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceE
Confidence            77653      11   123  667999999999 99999999999999999987         66666555   234588


Q ss_pred             EEEEecCCCEEEEeecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          166 KASFSHDGKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      +++|+|++  +++++.|+.|++||++. .....          ...                                  
T Consensus       155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~----------~~~----------------------------------  188 (342)
T 1yfq_A          155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG----------TIE----------------------------------  188 (342)
T ss_dssp             EEEECSSE--EEEEESTTEEEEEESSCCTTCCC----------EEE----------------------------------
T ss_pred             EEEecCCc--EEEEeCCCeEEEEECCccccccc----------eee----------------------------------
Confidence            89999887  99999999999999865 21110          001                                  


Q ss_pred             eecCCCceeeeeccCC-CCCeEEEecCCCeEEEEEcCCC------eeeeEEeeccc-------eeceeEEEEcCCCCEEE
Q psy988          245 VLNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDL------NLSCKYKGYVN-------VSSQIKASFSHDGKYIV  310 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~  310 (408)
                       ...+...+.+++|+| +++++++++.||.|++|+++..      +....+..+..       ...+.+++|+|++++|+
T Consensus       189 -~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  267 (342)
T 1yfq_A          189 -ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY  267 (342)
T ss_dssp             -ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred             -ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence             113344566666677 7777899999999999999887      77777777643       34789999999999999


Q ss_pred             EecCCceEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe-E
Q psy988          311 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV-I  388 (408)
Q Consensus       311 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~-v  388 (408)
                      +++.||.|++||+.++            +.+..+.+| ...|.+++  |                ++++|++++.||. .
T Consensus       268 ~~~~dg~i~vwd~~~~------------~~~~~~~~~h~~~v~~~~--~----------------~~~~l~s~s~Dg~~~  317 (342)
T 1yfq_A          268 TAGSDGIISCWNLQTR------------KKIKNFAKFNEDSVVKIA--C----------------SDNILCLATSDDTFK  317 (342)
T ss_dssp             EEETTSCEEEEETTTT------------EEEEECCCCSSSEEEEEE--E----------------CSSEEEEEEECTHHH
T ss_pred             EecCCceEEEEcCccH------------hHhhhhhcccCCCceEec--C----------------CCCeEEEEecCCccc
Confidence            9999999999999886            567778888 99999999  8                8999999999999 6


Q ss_pred             EEEeC
Q psy988          389 RVFLN  393 (408)
Q Consensus       389 ~iw~~  393 (408)
                      +.|..
T Consensus       318 ~~~~~  322 (342)
T 1yfq_A          318 TNAAI  322 (342)
T ss_dssp             HCSSS
T ss_pred             ccccc
Confidence            66664

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.8e-40  Score=284.71  Aligned_cols=279  Identities=16%  Similarity=0.219  Sum_probs=219.6

Q ss_pred             CceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ||.|+|||+.+++....+.   |.+.|.+++|+|.++++|++++.|+.|++||+.+...........|...|.+++|+|+
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  174 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS  174 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC
Confidence            7999999999888887764   9999999999995678999999999999999997554433333455688999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccC----cccce
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRD----LNLSC  153 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~  153 (408)
                      +++|++++.||.|++||++. +....+        ..|...|.+++|+|+++ .+++++.|+.|++||+++    +....
T Consensus       175 ~~~l~~~~~d~~i~i~d~~~-~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  245 (383)
T 3ei3_B          175 RQMLATGDSTGRLLLLGLDG-HEIFKE--------KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA  245 (383)
T ss_dssp             TTEEEEEETTSEEEEEETTS-CEEEEE--------ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred             CCEEEEECCCCCEEEEECCC-CEEEEe--------ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence            99999999999999999953 322222        24567999999999999 899999999999999998    44444


Q ss_pred             eecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          154 KYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      .+ .+  ...+.+++|+| ++++|++++.|+.|++||+++...........     .....+...+. +.|+|++..   
T Consensus       246 ~~-~~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~p~~~~---  313 (383)
T 3ei3_B          246 EM-PH--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP-----HRQFQHLTPIK-ATWHPMYDL---  313 (383)
T ss_dssp             EE-EC--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC-----BCCCTTSCCCC-CEECSSSSE---
T ss_pred             Ee-cC--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc-----ccccccccceE-EeccCCCCc---
Confidence            44 33  34588999999 99999999999999999997653321111000     01112233333 356665544   


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                           ..++++|++++  +++.|+.|++||+.+++.+..+.++.+...+..++|+|++++|++|
T Consensus       314 ---------------------~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          314 ---------------------IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             ---------------------EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             ---------------------eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence                                 35778899988  8899999999999999999999886555567778999999999999


Q ss_pred             cCCceEEEeeccc
Q psy988          313 SENQCIYIWKTHH  325 (408)
Q Consensus       313 ~~dg~i~iw~~~~  325 (408)
                      + ||.|++||+++
T Consensus       371 s-d~~i~iw~~~~  382 (383)
T 3ei3_B          371 M-GFNILIWNRED  382 (383)
T ss_dssp             E-TTEEEEEECC-
T ss_pred             c-CCcEEEEecCC
Confidence            7 99999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.8e-40  Score=273.87  Aligned_cols=270  Identities=12%  Similarity=0.099  Sum_probs=204.9

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSND  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  138 (408)
                      ..+.+|...|.+++|+|+|++|++|+.|++|++||+.+.....      .....+|..+|.+++|+|+  +++|++++.|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~------~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL------IDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC------CEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE------EEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            4578899999999999999999999999999999997532111      1112357789999999864  8899999999


Q ss_pred             CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988          139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  214 (408)
Q Consensus       139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      +.|++||+++++  .+..+..|.  ..+.+++|+|+  +.+|++++.|+.|++||++....          .....+..|
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----------~~~~~~~~h  144 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----------TSPIIIDAH  144 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------BCCEEEECC
T ss_pred             CEEEEEEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------eeeeeeecc
Confidence            999999998874  344455544  34889999997  88999999999999999975321          012345678


Q ss_pred             cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe----eeeEEee
Q psy988          215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN----LSCKYKG  290 (408)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~  290 (408)
                      ...|.+++|+|++.....                      .-...+++++|++++.|++|++||+++++    ....+.+
T Consensus       145 ~~~v~~~~~~p~~~~~~~----------------------~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~  202 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDG----------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (297)
T ss_dssp             SSCEEEEEECCCC----------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             cCccceEeecCCcccccc----------------------cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence            888889999886431100                      00112356789999999999999998765    5556777


Q ss_pred             ccceeceeEEEEcCCC---CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          291 YVNVSSQIKASFSHDG---KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      |..  .|.+++|+|++   ++||+++.|++|++||+........       ........|...|.+++|+|         
T Consensus       203 H~~--~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~---------  264 (297)
T 2pm7_B          203 HSD--WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK-------KTLLKEEKFPDVLWRASWSL---------  264 (297)
T ss_dssp             CSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-------EEESSSSCCSSCEEEEEECS---------
T ss_pred             CCC--ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc-------eeeeecccCCCcEEEEEECC---------
Confidence            655  89999999985   8999999999999999976421100       01111246788999999999         


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                             +|++||+++.||.|++|+...
T Consensus       265 -------~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          265 -------SGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             -------SSCCEEEEETTSCEEEEEECT
T ss_pred             -------CCCEEEEEcCCCcEEEEEECC
Confidence                   999999999999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.8e-40  Score=303.65  Aligned_cols=265  Identities=21%  Similarity=0.364  Sum_probs=213.3

Q ss_pred             CCceEEEEeccCC-----eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            1 MDKTVRLWHISRK-----ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         1 ~Dg~i~vwd~~~~-----~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      .||+|+|||+.+.     .....+. |...|.+++|+| ++++|++|+.||+|+|||+.++...  ..+.+|...|.+++
T Consensus       403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~--~~~~~h~~~v~~~~  479 (694)
T 3dm0_A          403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVST--RRFVGHTKDVLSVA  479 (694)
T ss_dssp             TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE
T ss_pred             CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcce--eEEeCCCCCEEEEE
Confidence            3899999999753     3444554 999999999999 9999999999999999999988765  68889999999999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC--CeEEEeeCCCeEEEEEccCcccc
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE--DKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      |+|++++|++++.|++|++||......     .........|...|.+++|+|++  ..+++++.|+.|++||+++++..
T Consensus       480 ~s~~~~~l~s~s~D~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          480 FSLDNRQIVSASRDRTIKLWNTLGECK-----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEE-----EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EeCCCCEEEEEeCCCEEEEEECCCCcc-----eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            999999999999999999999865432     11222334677889999999986  57999999999999999999888


Q ss_pred             eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      ..+.+|...  +.+++|+|++++|++++.||.|++||++++....            .+. +..                
T Consensus       555 ~~~~~h~~~--v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~------------~~~-~~~----------------  603 (694)
T 3dm0_A          555 STLAGHTGY--VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY------------SLE-ANS----------------  603 (694)
T ss_dssp             EEECCCSSC--EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE------------CCB-CSS----------------
T ss_pred             EEEcCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE------------Eec-CCC----------------
Confidence            888887654  8899999999999999999999999997653221            111 122                


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-----------------ee
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-----------------VS  295 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------------~~  295 (408)
                                         .+.+++|+|++.++++++ ++.|++||+++++.+..+..+..                 ..
T Consensus       604 -------------------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (694)
T 3dm0_A          604 -------------------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI  663 (694)
T ss_dssp             -------------------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred             -------------------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence                               344555555665566554 56699999999988877653211                 12


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      .+++++|+|+|++|++|+.||.|++|++.
T Consensus       664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          664 YCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            36789999999999999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-39  Score=283.46  Aligned_cols=262  Identities=13%  Similarity=0.303  Sum_probs=211.3

Q ss_pred             CCceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      +|++|+|||+.+++++..+.   |.+.|++|+|+| ++++||+|+.||+|+|||+.+++..  ..+.+|...+.++++  
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~--~~~~~h~~~v~~~s~--  197 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL--RNMTSHSARVGSLSW--  197 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEE--
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE--EEEeCCCCceEEEee--
Confidence            48999999999999988775   778899999999 9999999999999999999998776  688999999998877  


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc----e
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS----C  153 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~  153 (408)
                      ++.+|++|+.|+.+++||..........       ...|...+..+.++|++.++++++.|+.+++|+..+++..    .
T Consensus       198 ~~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~  270 (420)
T 4gga_A          198 NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ  270 (420)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred             CCCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence            5679999999999999998875543221       1245678999999999999999999999999999876532    2


Q ss_pred             eecCccccccceEEEEecCCCE-EEE--eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          154 KYKGYVNVSSQIKASFSHDGKY-IVS--GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~-l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      ....+.  ..+.+++|+|.+.. +++  |+.|+.|++||+.++.....            +. ....+.++.|+|++   
T Consensus       271 ~~~~~~--~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~------------~~-~~~~v~~~~~~~~~---  332 (420)
T 4gga_A          271 TFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------------VD-AHSQVCSILWSPHY---  332 (420)
T ss_dssp             EECCCS--SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE------------EE-CSSCEEEEEEETTT---
T ss_pred             eecccC--CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee------------ec-cccceeeeeecCCC---
Confidence            333333  44788999997654 444  45799999999976543221            11 22344555555554   


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  308 (408)
                                                      +.+++  |+.|+.|+|||+.+++++..+.+|..  .|.+++|+|||++
T Consensus       333 --------------------------------~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~  378 (420)
T 4gga_A          333 --------------------------------KELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGAT  378 (420)
T ss_dssp             --------------------------------TEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSC
T ss_pred             --------------------------------CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCE
Confidence                                            44444  45799999999999999999999866  8999999999999


Q ss_pred             EEEecCCceEEEeecccc
Q psy988          309 IVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       309 l~~~~~dg~i~iw~~~~~  326 (408)
                      |++|+.|++|+|||+...
T Consensus       379 l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          379 VASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EEEEETTTEEEEECCSCS
T ss_pred             EEEEecCCeEEEEECCCC
Confidence            999999999999999764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-39  Score=280.57  Aligned_cols=264  Identities=11%  Similarity=0.221  Sum_probs=213.4

Q ss_pred             CceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ||.|++||+.+++....+.  |...|.+++|+| ++++|++|+.||.|++||+.+++..  ..+.+|...|.+++|  ++
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~--~~  186 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKL--RTMAGHQARVGCLSW--NR  186 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEE--ET
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEE--EEecCCCCceEEEEE--CC
Confidence            8999999999999988876  789999999999 9999999999999999999988766  678899999999999  56


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ++|++++.||.|++||++........       ...|...|.+++|+|++++|++++.|+.|++||+++++....+..+.
T Consensus       187 ~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  259 (401)
T 4aez_A          187 HVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN  259 (401)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred             CEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence            79999999999999999854322111       12456799999999999999999999999999999988888777665


Q ss_pred             ccccceEEEEecCCCE-EEEee--cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988          160 NVSSQIKASFSHDGKY-IVSGS--ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  236 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  236 (408)
                      ..  +.+++|+|++.. +++++  .|+.|++||+.++...            ..+ .+                      
T Consensus       260 ~~--v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~------------~~~-~~----------------------  302 (401)
T 4aez_A          260 AA--VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV------------NTV-DA----------------------  302 (401)
T ss_dssp             SC--CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE------------EEE-EC----------------------
T ss_pred             ce--EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE------------EEE-eC----------------------
Confidence            44  789999997754 55544  6999999999754221            111 12                      


Q ss_pred             CCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          237 DKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                   ...+.+++|+|+++++++  |+.||.|++||+.+++.........+...+.+++|+|++++|++++.
T Consensus       303 -------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          303 -------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             -------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             -------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence                         234555566666666777  56899999999999776665443334458899999999999999999


Q ss_pred             CceEEEeeccccC
Q psy988          315 NQCIYIWKTHHDY  327 (408)
Q Consensus       315 dg~i~iw~~~~~~  327 (408)
                      ||.|++|++.++.
T Consensus       370 dg~i~iw~~~~~~  382 (401)
T 4aez_A          370 DENLKFWRVYDGD  382 (401)
T ss_dssp             TSEEEEEECCC--
T ss_pred             CCcEEEEECCCCc
Confidence            9999999998863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-39  Score=285.43  Aligned_cols=287  Identities=19%  Similarity=0.276  Sum_probs=224.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |...|.++.|   ++++|++|+.||.|++||+.+++..  ..+.+|...|.+++|  ++++|++|+.||.|++||+.+++
T Consensus       132 ~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          132 TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             SCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             CCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEE--EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            6677998887   6789999999999999999988876  688899999999999  78999999999999999999887


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc---eeecCccccccceEEEEecCCCEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS---CKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      .....        ..|...|.+++|+  ++.+++++.||.|++||+++++..   ..+.+|..  .+.++++  ++++++
T Consensus       205 ~~~~~--------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~  270 (435)
T 1p22_A          205 MLNTL--------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDF--DDKYIV  270 (435)
T ss_dssp             EEEEE--------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEE--ETTEEE
T ss_pred             EEEEE--------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC--cEEEEEe--CCCEEE
Confidence            54433        2456789999997  459999999999999999987765   44555543  3667777  788999


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +++.||.|++||++++.            .+..+..|...+.++.++                                 
T Consensus       271 s~~~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~---------------------------------  305 (435)
T 1p22_A          271 SASGDRTIKVWNTSTCE------------FVRTLNGHKRGIACLQYR---------------------------------  305 (435)
T ss_dssp             EEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEEE---------------------------------
T ss_pred             EEeCCCeEEEEECCcCc------------EEEEEcCCCCcEEEEEeC---------------------------------
Confidence            99999999999997642            233445555556555552                                 


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR  337 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  337 (408)
                          ++++++|+.||.|++||+++++++..+.+|..  .+.+++|  ++++|++|+.||.|++||+.++.....   ...
T Consensus       306 ----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~  374 (435)
T 1p22_A          306 ----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA---PAG  374 (435)
T ss_dssp             ----TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS---CTT
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc---ccc
Confidence                45689999999999999999999999988765  7888888  789999999999999999987532111   011


Q ss_pred             cccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      ...+..+.+|.+.|.+++|.                  +++|++++.||.|++||+.+.+.....
T Consensus       375 ~~~~~~~~~h~~~v~~l~~~------------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~  421 (435)
T 1p22_A          375 TLCLRTLVEHSGRVFRLQFD------------------EFQIVSSSHDDTILIWDFLNDPAAQAE  421 (435)
T ss_dssp             TTEEEEECCCSSCCCCEEEC------------------SSCEEECCSSSEEEEEC----------
T ss_pred             chheeeccCCCCCeEEEEeC------------------CCEEEEEeCCCEEEEEECCCCCCcccC
Confidence            12567788999999999993                  468999999999999999887654443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.3e-39  Score=283.87  Aligned_cols=288  Identities=18%  Similarity=0.265  Sum_probs=228.0

Q ss_pred             eEeEEE-eCCce-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           15 CLCCFQ-HIDFV-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        15 ~~~~~~-h~~~v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      ....+. |.+.| .++.+   ++++|++|+.||+|++||+.+++..  ..+.+|...|.+++|+|++ +|++++.||+|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCCcEE--EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            334454 88875 55555   4579999999999999999998766  6888999999999999988 899999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeC--CCCCeEEEeeCCCeEEEEEccCcccce-----------------
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM--PGEDKILVTSNDSRIRLYDLRDLNLSC-----------------  153 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------  153 (408)
                      +||+++++....+        ..|...|.+++|+  ++++++++++.||.|++||++++....                 
T Consensus       187 vwd~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          187 VWDIKKGCCTHVF--------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             EEETTTTEEEEEE--------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             EEECCCCcEEEEE--------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            9999988754433        2466799999998  577899999999999999998765432                 


Q ss_pred             ------eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          154 ------KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       154 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                            .+.++..  .+  .+++++++++++++.||.|++||++++..            +..+.+|..           
T Consensus       259 ~~~~~~~~~~~~~--~v--~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~-----------  311 (464)
T 3v7d_B          259 NPYFVGVLRGHMA--SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKC------------LYILSGHTD-----------  311 (464)
T ss_dssp             CTTEEEEECCCSS--CE--EEEEEETTEEEEEETTSCEEEEETTTTEE------------EEEECCCSS-----------
T ss_pred             CeEEEEEccCccc--eE--EEEcCCCCEEEEEeCCCeEEEEECCCCcE------------EEEecCCCC-----------
Confidence                  2233322  23  34578899999999999999999965422            222333444           


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  307 (408)
                                              .|.+++|+|+++++++++.|+.|++||+++++++..+.+|..  .+.+++|+  ++
T Consensus       312 ------------------------~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~  363 (464)
T 3v7d_B          312 ------------------------RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DK  363 (464)
T ss_dssp             ------------------------CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SS
T ss_pred             ------------------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CC
Confidence                                    455555555667789999999999999999999999988765  78888887  58


Q ss_pred             EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe
Q psy988          308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV  387 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  387 (408)
                      +|++++.||.|++||+.+..            ... ...|...+..++|+|                ++++|++++ ||.
T Consensus       364 ~l~s~s~dg~v~vwd~~~~~------------~~~-~~~~~~~~~~~~~~~----------------~~~~l~~~~-dg~  413 (464)
T 3v7d_B          364 FLVSAAADGSIRGWDANDYS------------RKF-SYHHTNLSAITTFYV----------------SDNILVSGS-ENQ  413 (464)
T ss_dssp             EEEEEETTSEEEEEETTTCC------------EEE-EEECTTCCCEEEEEE----------------CSSEEEEEE-TTE
T ss_pred             EEEEEeCCCcEEEEECCCCc------------eee-eecCCCCccEEEEEe----------------CCCEEEEec-CCe
Confidence            99999999999999998752            111 223667788899999                899999998 999


Q ss_pred             EEEEeCCCCCCccc
Q psy988          388 IRVFLNKTKPKHSS  401 (408)
Q Consensus       388 v~iw~~~~~~~~~~  401 (408)
                      |++||+.+++....
T Consensus       414 i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          414 FNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEEETTTCCEEES
T ss_pred             EEEEECCCCcEEeh
Confidence            99999999886654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=281.60  Aligned_cols=263  Identities=12%  Similarity=0.238  Sum_probs=204.8

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--CCEEEEEecCCE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--GKFAVVGSYDGR   90 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~   90 (408)
                      +++..+. |.+.|++++|+| ++++|++|+.||.|++|++..........+.+|...|.+++|+++  +++|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4455565 999999999999 999999999999999999986555555788999999999999977  999999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEE
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  168 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  168 (408)
                      |++||+.+.+......      ...|...|.+++|+|+  +..|++++.|+.|++||+++...........+...+.+++
T Consensus        81 v~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~  154 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  154 (379)
T ss_dssp             EEEEEEETTEEEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred             EEEEEcCCCceeEeee------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence            9999999876322222      1245679999999999  8999999999999999999875443333223345588999


Q ss_pred             Eec-------------CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          169 FSH-------------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       169 ~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      |+|             ++.+|++++.||.|++||++.+....        .....+.                       
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~-----------------------  203 (379)
T 3jrp_A          155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------VLESTLE-----------------------  203 (379)
T ss_dssp             ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE--------EEEEEEC-----------------------
T ss_pred             EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce--------eeEEEEe-----------------------
Confidence            999             69999999999999999996532111        0112223                       


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCC---CCeEEEecCCCeEEEEEcCCCee---eeEEeeccceeceeEEEEcCCCCEE
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l  309 (408)
                                  .|...|.+++|+|+   +++|++++.||.|++||+++++.   ...+....+...+.+++|+|++++|
T Consensus       204 ------------~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  271 (379)
T 3jrp_A          204 ------------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL  271 (379)
T ss_dssp             ------------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred             ------------cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence                        34455556666666   67789999999999999998642   2222232344578999999999999


Q ss_pred             EEecCCceEEEeecccc
Q psy988          310 VSGSENQCIYIWKTHHD  326 (408)
Q Consensus       310 ~~~~~dg~i~iw~~~~~  326 (408)
                      ++++.||.|++|++...
T Consensus       272 ~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          272 ALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEESSSSEEEEEEEET
T ss_pred             EEecCCCcEEEEeCCCC
Confidence            99999999999999853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.3e-39  Score=281.44  Aligned_cols=289  Identities=10%  Similarity=0.143  Sum_probs=222.5

Q ss_pred             CCceEEEEeccCCe------eEeEEE-eCCceEEEEEcCCC----C---CEEEEEeCCCcEEEEecCCCCc---eeeeee
Q psy988            1 MDKTVRLWHISRKE------CLCCFQ-HIDFVTAICFHPRD----D---RYFLSGSLDGKLRLWNIPDKKV---AVWNEV   63 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~------~~~~~~-h~~~v~~~~~sp~~----~---~~l~t~~~dg~i~iw~~~~~~~---~~~~~~   63 (408)
                      .||+|+|||+.+++      .+..+. |...|.+++|+| +    +   ++|++++.||.|++|++.+++.   .....+
T Consensus        34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  112 (397)
T 1sq9_A           34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL  112 (397)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred             CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence            38999999999988      555555 999999999999 8    8   9999999999999999998775   002577


Q ss_pred             cCC-----ceeeEEEEEe----cCCCE-EEEEecCCEEEEEeccC------CeeeE-----EEEEeeccccccCCCCeEE
Q psy988           64 EGQ-----TKLITAANFC----ENGKF-AVVGSYDGRCIFYTTDQ------LKYHT-----QIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        64 ~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iw~~~~------~~~~~-----~~~~~~~~~~~~~~~~v~~  122 (408)
                      ..|     ...|.+++|+    |++++ |++++.||.|++||+.+      .+...     .+.. .......|...+.+
T Consensus       113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~  191 (397)
T 1sq9_A          113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG-TVESPMTPSQFATS  191 (397)
T ss_dssp             CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE-EECCSSSSCCCCCE
T ss_pred             cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee-eeccccCCCCCceE
Confidence            778     5899999999    99999 99999999999999987      44333     2211 01111345678999


Q ss_pred             EeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC---cc-ccccceEEEEecCCCEEEEeecC---ceEEEeeecccee
Q psy988          123 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG---YV-NVSSQIKASFSHDGKYIVSGSEN---QCIYIWKTHHDYA  195 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~  195 (408)
                      ++|+|++ .+++++.||.|++||+++++.+..+..   |. ....+.+++|+|++++|++++.|   |.|++||++++..
T Consensus       192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~  270 (397)
T 1sq9_A          192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  270 (397)
T ss_dssp             EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence            9999999 999999999999999999988888776   40 03448899999999999999999   9999999975432


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEE
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIR  275 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  275 (408)
                      ..            .+....        .+..              .......+...|.+++|+|++++|++++.|+.|+
T Consensus       271 ~~------------~~~~~~--------~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          271 IG------------SLSVPT--------HSSQ--------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EE------------EECBC------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             cc------------eeccCc--------cccc--------------ccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            21            111100        0000              0000112556777788888888899999999999


Q ss_pred             EEEcCCCeeeeEEe------ec-------------cceeceeEEEEcCCC----------CEEEEecCCceEEEeecccc
Q psy988          276 LYDLRDLNLSCKYK------GY-------------VNVSSQIKASFSHDG----------KYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       276 i~d~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +||+++++.+..+.      .|             .+...|.+++|+|++          ++|++++.||.|++|++.++
T Consensus       317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            99999999999988      54             004489999999998          79999999999999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.4e-40  Score=273.87  Aligned_cols=255  Identities=15%  Similarity=0.199  Sum_probs=194.9

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEecc
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~   97 (408)
                      +|.+.|++++|+| ++++||+|+.|++|+|||+.++.......+.+|...|.+++|++  ++++|++++.|++|++||++
T Consensus        11 ~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           11 SHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ---CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             cccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            4999999999999 99999999999999999998876544578899999999999985  48999999999999999998


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCccc---ceeecCccccccceEEEEecC
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      ++.......      ...|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ...+..|.  ..+.+++|+|+
T Consensus        90 ~~~~~~~~~------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~~~~  161 (316)
T 3bg1_A           90 NGTWEKSHE------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT--IGCNAVSWAPA  161 (316)
T ss_dssp             SSCCCEEEE------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS--SCBCCCEECCC
T ss_pred             CCcceEEEE------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc--CCcceEEEccc
Confidence            764222111      2346679999999998  78999999999999999987532   23334443  34677899987


Q ss_pred             -----------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          173 -----------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       173 -----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                                       +++|++++.|+.|++||++....         ......+.+|...|.+++|+|++..      
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------~~~~~~l~~h~~~V~~v~~sp~~~~------  226 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---------WKEEQKLEAHSDWVRDVAWAPSIGL------  226 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---------EEEEECCBCCSSCEEEEECCCCSSC------
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc---------cceeeecccCCCceEEEEecCCCCC------
Confidence                             47899999999999999854210         0122334556556666665554311      


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---e-eeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---N-LSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                                               ++++|++++.|++|++||+.+.   + ....+..|.  ..+.+++|+|++++||+
T Consensus       227 -------------------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          227 -------------------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILAV  279 (316)
T ss_dssp             -------------------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEE
T ss_pred             -------------------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEE
Confidence                                     1267899999999999998763   1 223344443  47899999999999999


Q ss_pred             ecCCceEEEeeccc
Q psy988          312 GSENQCIYIWKTHH  325 (408)
Q Consensus       312 ~~~dg~i~iw~~~~  325 (408)
                      ++.|+.|++|+...
T Consensus       280 ~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          280 SGGDNKVTLWKESV  293 (316)
T ss_dssp             EESSSCEEEEEECT
T ss_pred             EcCCCeEEEEEECC
Confidence            99999999999763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-39  Score=272.49  Aligned_cols=274  Identities=12%  Similarity=0.055  Sum_probs=202.4

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--CCCeEEEeeCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--GEDKILVTSND  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  138 (408)
                      ..+.+|...|.+++|+|+|++|++|+.|++|++||+.++......   .   ..+|...|.+++|+|  ++++|++++.|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~---~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA---D---LRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE---E---EECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE---E---EcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            356789999999999999999999999999999999876432111   1   235678999999986  48899999999


Q ss_pred             CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988          139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  214 (408)
Q Consensus       139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      +.|++||+++++  ....+.+|..  .+.+++|+|+  +.+|++++.|+.|++||++.+...         .....+..|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~---------~~~~~~~~h  149 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW---------EVKKINNAH  149 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSS--CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---------EECCBTTSS
T ss_pred             CEEEEEECCCCcceEEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---------ceeeeeccc
Confidence            999999998874  3444555544  4889999998  789999999999999999753110         112345677


Q ss_pred             cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC---eeeeEEeec
Q psy988          215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGY  291 (408)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~  291 (408)
                      ...+.++.|+|+...-..             . .+.    .-...+++++|++++.|++|++||++..   ++...+.+|
T Consensus       150 ~~~v~~~~~~~~~~~~~~-------------~-~~~----~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSL-------------I-DHP----SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             SSCBCCCEECCCCCC--------------------C----CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             cCCcceEEEccccCCccc-------------c-ccc----cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            788888888887421000             0 000    0011224678999999999999999755   355556666


Q ss_pred             cceeceeEEEEcCCC----CEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          292 VNVSSQIKASFSHDG----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      ..  .|.+++|+|++    ++|++|+.|++|++|++.+....        ......+..|...|.+++|+|         
T Consensus       212 ~~--~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~v~~sp---------  272 (316)
T 3bg1_A          212 SD--WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN--------TWSPKLLHKFNDVVWHVSWSI---------  272 (316)
T ss_dssp             SS--CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC--------CCBCCEEEECSSCEEEEEECT---------
T ss_pred             CC--ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc--------chhhhhhhcCCCcEEEEEEcC---------
Confidence            54  89999999987    89999999999999998763110        011234567899999999999         


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                             ++++||+++.||.|++|+...
T Consensus       273 -------~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          273 -------TANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             -------TTCCEEEEESSSCEEEEEECT
T ss_pred             -------CCCEEEEEcCCCeEEEEEECC
Confidence                   999999999999999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.6e-39  Score=275.27  Aligned_cols=309  Identities=15%  Similarity=0.178  Sum_probs=211.9

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEec--CCCEEEEEecCCEEEEEe
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCE--NGKFAVVGSYDGRCIFYT   95 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~   95 (408)
                      +|.+.|++++|+| ++++|++|+.||.|++||+.++..  .....+.+|...|.+++|+|  ++++|++++.||.|++||
T Consensus         9 gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            9 GHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             ccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            4999999999999 999999999999999999987542  23467789999999999999  699999999999999999


Q ss_pred             ccCCeeeEEE-EEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecC-----------cccc
Q psy988           96 TDQLKYHTQI-HVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKG-----------YVNV  161 (408)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~  161 (408)
                      +++.+..... ..........|...|.+++|+|+  +.+|++++.||.|++||+++++.+..+..           ....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            9876321000 00001112346679999999999  99999999999999999998876544321           1233


Q ss_pred             ccceEEEEecC---CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          162 SSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       162 ~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                      ..+.+++|+|+   +.++++++.++.+.+|+...+...          ....+..|...|.++                 
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~h~~~i~~~-----------------  220 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH----------VAAKLPGHKSLIRSI-----------------  220 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE----------EEEECCCCCSCEEEE-----------------
T ss_pred             cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee----------eeeecCCCCcceeEE-----------------
Confidence            45788999997   899999999999977776543211          122333444445544                 


Q ss_pred             CCCceeeecCCCceeeeeccCCCC----CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC
Q psy988          239 SESTGYVLNATGRKISGIEPMPGE----DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                        +|+|++    ++|++++.||.|++||++++...........  .......++....++.+..
T Consensus       221 ------------------~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          221 ------------------SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT--NSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             ------------------EECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred             ------------------EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc--ceeccCCCccccccccccc
Confidence                              455555    5689999999999999987655444332222  2333444455555544433


Q ss_pred             ----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988          315 ----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV  390 (408)
Q Consensus       315 ----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i  390 (408)
                          ...+.+|+....            +.+..+.+|...|++++|+|                ++++|++++.||.|++
T Consensus       281 ~~~~~~~~~~~~~~~~------------~~~~~~~~h~~~v~~~~~s~----------------~~~~l~s~~~dg~v~i  332 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQV------------ELLSEHDDHNGEVWSVSWNL----------------TGTILSSAGDDGKVRL  332 (351)
T ss_dssp             ----------CCSEEE------------EEEEEECTTSSCEEEEEECS----------------SSCCEEEEETTSCEEE
T ss_pred             ccccceeeeecccccc------------cEEEEEecccccEEEEEEcC----------------CCCEEEEecCCCcEEE
Confidence                344555554443            56777889999999999999                9999999999999999


Q ss_pred             EeCCCCCCcccccc
Q psy988          391 FLNKTKPKHSSLPV  404 (408)
Q Consensus       391 w~~~~~~~~~~~~~  404 (408)
                      |++.+++....+..
T Consensus       333 w~~~~~~~~~~~~~  346 (351)
T 3f3f_A          333 WKATYSNEFKCMSV  346 (351)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EecCcCcchhheee
Confidence            99999877665543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=272.87  Aligned_cols=272  Identities=16%  Similarity=0.208  Sum_probs=209.7

Q ss_pred             CceEEEEeccCCeeEeE--EEeCCceEEEEEcCCC---CCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEE-
Q psy988            2 DKTVRLWHISRKECLCC--FQHIDFVTAICFHPRD---DRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAAN-   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~--~~h~~~v~~~~~sp~~---~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~-   74 (408)
                      ||.|+|||+.+++....  ++|...|.+++|+| +   +++|++|+.||.|++||+.+++ ..  ..+.+|...|.++. 
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~  119 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA-TSLQQRYLATGDFGGNLHIWNLEAPEMPV--YSVKGHKEIINAIDG  119 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTT-CCTTTCCEEEEETTSCEEEECTTSCSSCS--EEECCCSSCEEEEEE
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcC-CCCCCceEEEecCCCeEEEEeCCCCCccE--EEEEecccceEEEee
Confidence            89999999999887544  45999999999999 6   7999999999999999999887 44  67889999999995 


Q ss_pred             -----EecCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccccccCCCCeEEEe----eCCCCCeEEEeeCCCeEEEE
Q psy988           75 -----FCENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRGKNATGRKISGIE----PMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        75 -----~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~i~  144 (408)
                           |+|++++|++++.||.|++||+.+.+ ........    .......+.+++    |+|+++++++++.||.|++|
T Consensus       120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV----QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC----TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred             ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc----CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence                 46899999999999999999999876 33222111    111234788887    78999999999999999999


Q ss_pred             EccCcccceeecCccccccceEEEEec---CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSH---DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                      |+++++..... .+  ...+.+++|+|   ++++|++++.||.|++||+++.......       ....+..|...|.++
T Consensus       196 d~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~v~~~  265 (357)
T 3i2n_A          196 DLRNMALRWET-NI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF-------ASVSEKAHKSTVWQV  265 (357)
T ss_dssp             ETTTTEEEEEE-EC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE-------EEEEEECCSSCEEEE
T ss_pred             ECccCceeeec-CC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce-------eeeccCCCcCCEEEE
Confidence            99988764432 22  34588999999   9999999999999999999754221100       001122455555555


Q ss_pred             EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC-------------------
Q psy988          222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-------------------  282 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------  282 (408)
                      +|+|+++.                                  +|++++.||.|++||++++                   
T Consensus       266 ~~~~~~~~----------------------------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          266 RHLPQNRE----------------------------------LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             EEETTEEE----------------------------------EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             EECCCCCc----------------------------------EEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            55555442                                  4788999999999999854                   


Q ss_pred             eeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeecccc
Q psy988          283 NLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD  326 (408)
Q Consensus       283 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~  326 (408)
                      +.+..+..|..  .|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus       312 ~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          312 SLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            34555666544  889999999999998 8999999999999764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-38  Score=278.25  Aligned_cols=286  Identities=19%  Similarity=0.322  Sum_probs=231.4

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      +....+. |.+.|.. ++++ ++++|++|+.||.|++||+.+++..  ..+.+|...|.+++|+  ++++++++.||.|+
T Consensus       109 ~~~~~l~~h~~~v~~-~~~~-~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          109 KSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             CCCEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             ceeEEecccCCCcEE-EEEE-cCCEEEEEECCCcEEEEECCCCcEE--EEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            3445555 8887643 3555 6889999999999999999998866  6888999999999997  67999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +||+.+++.....        ..|...|.++.|+  ++.+++++.||.|++||+++++....+..+...  +.++.+  +
T Consensus       183 vwd~~~~~~~~~~--------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~--v~~~~~--~  248 (445)
T 2ovr_B          183 VWNAETGECIHTL--------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQY--D  248 (445)
T ss_dssp             EEETTTTEEEEEE--------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--EEEEEE--C
T ss_pred             EEECCcCcEEEEE--------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc--EEEEEE--C
Confidence            9999988654433        2466789999995  678999999999999999999988888776554  667777  7


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      ++++++++.||.|++||++++..            ...+..|...+.++.|                             
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~-----------------------------  287 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPETETC------------LHTLQGHTNRVYSLQF-----------------------------  287 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEE------------EEEECCCSSCEEEEEE-----------------------------
T ss_pred             CCEEEEEcCCCEEEEEECCCCcE------------eEEecCCCCceEEEEE-----------------------------
Confidence            88999999999999999875422            2333444445554444                             


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                              ++.++++++.|+.|++||+++++.+..+.+|..  .+.++.+  ++++|++|+.||.|++||+.++      
T Consensus       288 --------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~------  349 (445)
T 2ovr_B          288 --------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG------  349 (445)
T ss_dssp             --------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC------
T ss_pred             --------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC------
Confidence                    466789999999999999999999988887755  5665555  6789999999999999999876      


Q ss_pred             cccCccccceeeee---eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          333 VRRDRNDFWEGIKA---HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       333 ~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                            +.+..+.+   |...|.+++|++                  ++|++|+.||.|++||+.+++....+
T Consensus       350 ------~~~~~~~~~~~~~~~v~~~~~~~------------------~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          350 ------QCLQTLQGPNKHQSAVTCLQFNK------------------NFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             ------CEEEEECSTTSCSSCEEEEEECS------------------SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------cEEEEEccCCCCCCCEEEEEECC------------------CEEEEEeCCCeEEEEECCCCceeeee
Confidence                  45555554   888999999964                  69999999999999999998876555

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=271.74  Aligned_cols=269  Identities=14%  Similarity=0.178  Sum_probs=219.4

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ||.|++||+.+++.+..+. |.+.|.+++|+| ++++|++++.||.|++||+.+++..  ..+. +...+.+++|+|+++
T Consensus        53 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~  128 (369)
T 3zwl_B           53 DSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCV--ATWK-SPVPVKRVEFSPCGN  128 (369)
T ss_dssp             SSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE--EEEE-CSSCEEEEEECTTSS
T ss_pred             CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE--EEee-cCCCeEEEEEccCCC
Confidence            8999999999999999987 999999999999 9999999999999999999998876  3444 788999999999999


Q ss_pred             EEEEEecC-----CEEEEEeccCCeeeEEEEEee---ccccccCCC--CeEEEeeCCCCCeEEEeeCCCeEEEEEccC-c
Q psy988           81 FAVVGSYD-----GRCIFYTTDQLKYHTQIHVRS---TRGKNATGR--KISGIEPMPGEDKILVTSNDSRIRLYDLRD-L  149 (408)
Q Consensus        81 ~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~  149 (408)
                      ++++++.+     |.|++||+.............   ......+..  .+.+++|+|+++.|++++.||.|++||+++ .
T Consensus       129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  208 (369)
T 3zwl_B          129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY  208 (369)
T ss_dssp             EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred             EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99999999     999999998765332222111   111122333  899999999999999999999999999998 6


Q ss_pred             ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          150 NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      +....+..+..  .+.+++|+|++++|++++.||.|++||+++.....            .+. +...+.+         
T Consensus       209 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~------------~~~-~~~~~~~---------  264 (369)
T 3zwl_B          209 EYVDSIDLHEK--SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK------------KYE-TDCPLNT---------  264 (369)
T ss_dssp             EEEEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE------------EEE-CSSCEEE---------
T ss_pred             EeEEEEecCCC--ceeEEEECCCCCEEEEecCCceEEEEECCCCceee------------eec-CCCCcee---------
Confidence            67777766554  48899999999999999999999999997643221            111 3334444         


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC--------------eEEEEEcCCCeeeeEEeecccee
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS--------------RIRLYDLRDLNLSCKYKGYVNVS  295 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~  295 (408)
                                                ++|+|+++++++++.++              .+++||..+++.+..+.+|..  
T Consensus       265 --------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--  316 (369)
T 3zwl_B          265 --------------------------AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--  316 (369)
T ss_dssp             --------------------------EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS--
T ss_pred             --------------------------EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC--
Confidence                                      44555555566666665              899999999999999988765  


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .|.+++|+|++++|++++.||.|++|++..+
T Consensus       317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            8899999999999999999999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-39  Score=285.26  Aligned_cols=285  Identities=16%  Similarity=0.254  Sum_probs=208.8

Q ss_pred             CCceEEEEeccCCeeEeEE---EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .||+|+|||+.+++....+   +|.+.|++|+|+|.++++|++|+.||+|++||++++..........+...+.+++|+|
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA  219 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence            3899999999887654444   4999999999999678999999999999999998776553333444556788999999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeec
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ++++|++|+.||.|++||++....         .....|...|.+++|+|+++ .+++++.|+.|++||+++.+....+.
T Consensus       220 ~~~~l~~g~~dg~i~~wd~~~~~~---------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~  290 (435)
T 4e54_B          220 SSRMVVTGDNVGNVILLNMDGKEL---------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL  290 (435)
T ss_dssp             TTTEEEEECSSSBEEEEESSSCBC---------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred             CCCEEEEEeCCCcEeeeccCccee---------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence            999999999999999999875321         22345678999999999886 57788999999999999876554432


Q ss_pred             C-ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          157 G-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       157 ~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      . ..+...+.+++|+|++++|++++.||.|++||+.++............      ...........|+|++..++    
T Consensus       291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----  360 (435)
T 4e54_B          291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR------HFQHLTPIKAAWHPRYNLIV----  360 (435)
T ss_dssp             BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC------CCSSSCCCBCEECSSSSCEE----
T ss_pred             EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc------ccccceeEEEEEcCCCCEEE----
Confidence            2 223345889999999999999999999999999765433221110000      00011122334555544443    


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEE-EEcCCCCEEEEec
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVSGS  313 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~  313 (408)
                                          +.+++++..++++ ..++.|++||..+++.+..+..+. ...|.++ +|+|+|++|++|+
T Consensus       361 --------------------~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          361 --------------------VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             --------------------EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSSCEEEEC
T ss_pred             --------------------EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCCEEEEEc
Confidence                                3455556555554 445689999999999888876432 2356665 6999999999986


Q ss_pred             CCceEEEeecccc
Q psy988          314 ENQCIYIWKTHHD  326 (408)
Q Consensus       314 ~dg~i~iw~~~~~  326 (408)
                       |+.|+||+++++
T Consensus       420 -d~~i~iW~~~~g  431 (435)
T 4e54_B          420 -GYHILIWSQQEA  431 (435)
T ss_dssp             -SSEEEECCCC--
T ss_pred             -CCcEEEEECCcC
Confidence             789999999876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-38  Score=274.08  Aligned_cols=268  Identities=12%  Similarity=0.096  Sum_probs=214.0

Q ss_pred             CceEEEEeccCCe--eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKE--CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~--~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ||.|++||+.+++  .+..+. |...|.+++|+| ++++|++++.||.|++||+.+++......+..|...|.+++|+|+
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            7999999999997  777776 999999999999 999999999999999999998876654566789999999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc-----------
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-----------  147 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-----------  147 (408)
                      +++|++++.||.|++||++...........    ...|...|.+++|+|++++|++++.||.|++||++           
T Consensus       108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  183 (372)
T 1k8k_C          108 EKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT  183 (372)
T ss_dssp             SSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred             CCEEEEEeCCCEEEEEEecCCCcceeeeee----ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence            999999999999999999887642222111    13456789999999999999999999999999954           


Q ss_pred             -------CcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          148 -------DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       148 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                             .++....+..+..  .+.+++|+|++++|++++.||.|++||++++.            .+..+..|...+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~v~~  249 (372)
T 1k8k_C          184 PWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHDSTVCLADADKKM------------AVATLASETLPLLA  249 (372)
T ss_dssp             TTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT------------EEEEEECSSCCEEE
T ss_pred             ccccccchhhheEecCCCCC--eEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------eeEEEccCCCCeEE
Confidence                   4566666665543  48899999999999999999999999997542            22334445555555


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC--Cee--e-----------
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD--LNL--S-----------  285 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~--~-----------  285 (408)
                      ++|+|+                                   +++++++ .|+.|++|++.+  ++.  .           
T Consensus       250 ~~~~~~-----------------------------------~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  293 (372)
T 1k8k_C          250 VTFITE-----------------------------------SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ  293 (372)
T ss_dssp             EEEEET-----------------------------------TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred             EEEecC-----------------------------------CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchh
Confidence            555554                                   4445666 899999999987  421  0           


Q ss_pred             -------------------------eEE-eeccceeceeEEEEc-CCC---CEEEEecCCceEEEeecccc
Q psy988          286 -------------------------CKY-KGYVNVSSQIKASFS-HDG---KYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       286 -------------------------~~~-~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iw~~~~~  326 (408)
                                               ..+ .+|  ...|.+++|. ++|   ++|++|+.||.|++|++.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             ---CHHHHHHHCCCCC---------CCCSSSS--SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             hhcchhhhhhhcccccccccCccccccccccc--cCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                                     111 244  3488999866 677   99999999999999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.8e-38  Score=265.97  Aligned_cols=265  Identities=21%  Similarity=0.369  Sum_probs=212.4

Q ss_pred             CCceEEEEeccCCe-----eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            1 MDKTVRLWHISRKE-----CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~-----~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      .||+|+|||+.+.+     +...+. |...|.+++|+| ++++|++++.|+.|++|+.......  .....+...+..+.
T Consensus        59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~~~~  135 (340)
T 4aow_A           59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTT--RRFVGHTKDVLSVA  135 (340)
T ss_dssp             TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE
T ss_pred             CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeeccccee--eeecCCCCceeEEE
Confidence            48999999997654     344554 999999999999 9999999999999999999887765  56677788899999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC--CeEEEeeCCCeEEEEEccCcccc
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE--DKILVTSNDSRIRLYDLRDLNLS  152 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  152 (408)
                      +++++++|++++.|+.+++||........       .....|...+..++|++++  ..+++++.|+.|++||+++++..
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  208 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYT-------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK  208 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEE-------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEE-------EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence            99999999999999999999987654321       1123566789999998764  46788899999999999999988


Q ss_pred             eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      ..+.+|...  +.+++|+|++++|++++.||.|++||+++.....            .+. +...               
T Consensus       209 ~~~~~h~~~--v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~------------~~~-~~~~---------------  258 (340)
T 4aow_A          209 TNHIGHTGY--LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY------------TLD-GGDI---------------  258 (340)
T ss_dssp             EEECCCSSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE------------EEE-CSSC---------------
T ss_pred             eEecCCCCc--EEEEEECCCCCEEEEEeCCCeEEEEEeccCceee------------eec-CCce---------------
Confidence            888877654  8899999999999999999999999997643221            111 1223               


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-------cceeceeEEEEcCC
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-------VNVSSQIKASFSHD  305 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~v~~~~~s~~  305 (408)
                                          +.+++|+|++. +++++.|+.|++||++++.....+...       .+...|++++|+|+
T Consensus       259 --------------------v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          259 --------------------INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             --------------------EEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred             --------------------EEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence                                44445555544 445677999999999988877665432       23457899999999


Q ss_pred             CCEEEEecCCceEEEeecccc
Q psy988          306 GKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       306 ~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      |++|++|+.||.|+|||+.++
T Consensus       318 g~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          318 GQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             SSEEEEEETTSCEEEEEEEC-
T ss_pred             CCEEEEEeCCCEEEEEeCCCc
Confidence            999999999999999999886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.7e-38  Score=263.11  Aligned_cols=266  Identities=13%  Similarity=0.250  Sum_probs=211.1

Q ss_pred             CCceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      +|++|+|||+.++++++.+.   |...|++++|+| ++++|++|+.||+|++|++++++..  ..+.+|...+.++.  +
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~--~~~~~h~~~~~~~~--~  117 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL--RNMTSHSARVGSLS--W  117 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEE--E
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeE--EEecCccceEEEee--c
Confidence            48999999999999998875   788899999999 9999999999999999999998876  67889988887655  4


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee--
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY--  155 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--  155 (408)
                      ++..+++++.++.+++|+...........       ..|...+..+.+.++++++++++.|+.|++||+++++.....  
T Consensus       118 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  190 (318)
T 4ggc_A          118 NSYILSSGSRSGHIHHHDVRVAEHHVATL-------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ  190 (318)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred             CCCEEEEEecCCceEeeecCCCceeEEEE-------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee
Confidence            67899999999999999988765433221       245678999999999999999999999999999987643322  


Q ss_pred             cCccccccceEEEEecCCCEE---EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          156 KGYVNVSSQIKASFSHDGKYI---VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      ........+..+.++|++..+   ++++.++.|++||.......             ....+...+..+.|+|++..++ 
T Consensus       191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~-  256 (318)
T 4ggc_A          191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-------------SAVDAHSQVCSILWSPHYKELI-  256 (318)
T ss_dssp             EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-------------EEEECSSCEEEEEEETTTTEEE-
T ss_pred             eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-------------ccccceeeeeeeeecccccceE-
Confidence            112223447788898876543   45677899999998654322             1223444555666666554442 


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                                      +++++.|+.|++||+++++++..+.+|..  .|++++|+|+|++|++|
T Consensus       257 --------------------------------~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          257 --------------------------------SGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASA  302 (318)
T ss_dssp             --------------------------------EEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEE
T ss_pred             --------------------------------EEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEE
Confidence                                            23356899999999999999999998866  89999999999999999


Q ss_pred             cCCceEEEeecccc
Q psy988          313 SENQCIYIWKTHHD  326 (408)
Q Consensus       313 ~~dg~i~iw~~~~~  326 (408)
                      +.||+|+|||+.+.
T Consensus       303 s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          303 AADETLRLWRCFEL  316 (318)
T ss_dssp             ETTTEEEEECCSCC
T ss_pred             ecCCeEEEEECCCC
Confidence            99999999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-39  Score=285.95  Aligned_cols=280  Identities=8%  Similarity=-0.004  Sum_probs=201.3

Q ss_pred             CCeeEeEEEeCCceEEEEEcCCCC---------CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988           12 RKECLCCFQHIDFVTAICFHPRDD---------RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~sp~~~---------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      +++....+.+.+.|.+|+|+| ++         ++||+|+.++..                         -..+|+++.+
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p-~~~~~~~~~~~~~LAv~~~~~~~-------------------------~~~~~~~~~l  176 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLN-IEENTDIGKDIQYLAVAVSQYMD-------------------------EPLNEHLEMF  176 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEE-ECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred             CCcceEEEECCCceeEEEecc-cCCCCccCcCCeEEEEEEecccC-------------------------Cccchhhhhh
Confidence            345556677899999999999 65         799999876420                         0136899999


Q ss_pred             EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC------CCeEEEeeCCCeEEEEEccCcccc----
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG------EDKILVTSNDSRIRLYDLRDLNLS----  152 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~----  152 (408)
                      ++++.|++|+||++.+.+...... ..   ...|.+.|.+++|+|+      +.+|++++.||+|++||+.++...    
T Consensus       177 aS~s~D~tI~iWd~~~~~~~~~~~-~~---l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          177 DKEKHSSCIQIFKMNTSTLHCVKV-QT---IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             -----CEEEEEEEEETTTCCEEEE-EE---EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             ccCCCCceEEEEEccCCCCCceEE-EE---EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            999999999999998765432111 00   1134468999999996      579999999999999999876422    


Q ss_pred             -------eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          153 -------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       153 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                             ..+.+|.  ..+.+++|++++ .|++|+.||+|++||++++.           .+...+..|...|.++++  
T Consensus       253 ~~~~~p~~~l~~h~--~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----------~~~~~~~~H~~~V~sv~~--  316 (524)
T 2j04_B          253 KMCEKPSLTLSLAD--SLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----------VPSFYDQVHDSYILSVST--  316 (524)
T ss_dssp             ECCCSCSEEECCTT--TCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----------SCSEEEECSSSCEEEEEE--
T ss_pred             eeecCceEEEEcCC--CCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----------CceEEeecccccEEEEEE--
Confidence                   2344444  458899999864 89999999999999996431           111223444444444411  


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~  304 (408)
                                                     +|+|++ .+|++++.|++|+|||++++++...+.+|.....+.+++|+|
T Consensus       317 -------------------------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          317 -------------------------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             -------------------------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             -------------------------------EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence                                           345565 678999999999999999988887877765434577899999


Q ss_pred             CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec
Q psy988          305 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF  384 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  384 (408)
                      +++.+++++.|++|++||+..+            .++..+.+|.+.|++++|+|                +|++|++|+.
T Consensus       366 ~~~~l~s~~~d~tv~lwd~~~~------------~~~~~l~gH~~~V~sva~Sp----------------~g~~l~Sgs~  417 (524)
T 2j04_B          366 QIYSYIYSDGASSLRAVPSRAA------------FAVHPLVSRETTITAIGVSR----------------LHPMVLAGSA  417 (524)
T ss_dssp             TTTEEEEECSSSEEEEEETTCT------------TCCEEEEECSSCEEEEECCS----------------SCCBCEEEET
T ss_pred             CcCeEEEeCCCCcEEEEECccc------------ccceeeecCCCceEEEEeCC----------------CCCeEEEEEC
Confidence            9999999999999999999876            45567889999999999999                9999999999


Q ss_pred             CCeEEEEeCCCC
Q psy988          385 NGVIRVFLNKTK  396 (408)
Q Consensus       385 dg~v~iw~~~~~  396 (408)
                      ||+|++|++..+
T Consensus       418 Dgtv~lwd~~~~  429 (524)
T 2j04_B          418 DGSLIITNAARR  429 (524)
T ss_dssp             TTEEECCBSCSS
T ss_pred             CCEEEEEechHh
Confidence            999999998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-39  Score=284.80  Aligned_cols=287  Identities=15%  Similarity=0.167  Sum_probs=226.3

Q ss_pred             CCceEEEEeccC---Ce---eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC---CCCceeeeeec-------
Q psy988            1 MDKTVRLWHISR---KE---CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP---DKKVAVWNEVE-------   64 (408)
Q Consensus         1 ~Dg~i~vwd~~~---~~---~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~---~~~~~~~~~~~-------   64 (408)
                      .||+|+|||+.+   +.   ....+.|.+.|.+++|+| ++++|++|+.||.|++||+.   .++..  ....       
T Consensus        84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~i~~~  160 (437)
T 3gre_A           84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV--KFLNCECIRKI  160 (437)
T ss_dssp             TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred             CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee--eccccceeEEE
Confidence            389999999977   43   455567999999999999 99999999999999999995   44433  1111       


Q ss_pred             ---C--CceeeEEEE--EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC
Q psy988           65 ---G--QTKLITAAN--FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN  137 (408)
Q Consensus        65 ---~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  137 (408)
                         .  +...+.++.  +++++.+|++++.||.|++||+++.+....+...      .|...|.+++|+|++++|++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~  234 (437)
T 3gre_A          161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS------PRHGAVSSICIDEECCVLILGTT  234 (437)
T ss_dssp             EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC------GGGCCEEEEEECTTSCEEEEEET
T ss_pred             EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC------CCCCceEEEEECCCCCEEEEEcC
Confidence               1  445566666  4578999999999999999999988765544321      14568999999999999999999


Q ss_pred             CCeEEEEEccCcccceeec-CccccccceEEEE----ecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc
Q psy988          138 DSRIRLYDLRDLNLSCKYK-GYVNVSSQIKASF----SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  212 (408)
Q Consensus       138 dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
                      ||.|++||+++++.+..+. .+.  ..+.++++    ++++.+|++++.||.|++||++++.            ....+.
T Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~  300 (437)
T 3gre_A          235 RGIIDIWDIRFNVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH------------CQYAFI  300 (437)
T ss_dssp             TSCEEEEETTTTEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE------------EEEEEE
T ss_pred             CCeEEEEEcCCccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc------------EEEEEE
Confidence            9999999999988887765 333  34778854    4578899999999999999997653            334456


Q ss_pred             cccceEEEEEEeCCcceeeeecCCCCCCCceeeec--CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee
Q psy988          213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN--ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  290 (408)
                      .|...+..+.|+|+++.+..           ..+.  .+...|.+++|+ ++++|++++.|+.|++||+.+++....+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          301 NSDEQPSMEHFLPIEKGLEE-----------LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             SSSSCCCGGGGSCBCSSGGG-----------CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCCCccceeccccccccc-----------ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            66667777777777665511           1122  377889999999 789999999999999999999988877765


Q ss_pred             cc-----------------------------------ceeceeEEEEcCC--CCEEEEecCCceEEEee
Q psy988          291 YV-----------------------------------NVSSQIKASFSHD--GKYIVSGSENQCIYIWK  322 (408)
Q Consensus       291 ~~-----------------------------------~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~  322 (408)
                      +.                                   +...|.+++|+++  +.+|++|+.||.|+||+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            31                                   3457889999998  78999999999999995

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-38  Score=271.45  Aligned_cols=270  Identities=15%  Similarity=0.151  Sum_probs=200.0

Q ss_pred             CceEEEEeccCCee--------EeE--EE-eCCceEEEEEcCCCCCEEEEE-----------eCCCcEEEEecCCCCcee
Q psy988            2 DKTVRLWHISRKEC--------LCC--FQ-HIDFVTAICFHPRDDRYFLSG-----------SLDGKLRLWNIPDKKVAV   59 (408)
Q Consensus         2 Dg~i~vwd~~~~~~--------~~~--~~-h~~~v~~~~~sp~~~~~l~t~-----------~~dg~i~iw~~~~~~~~~   59 (408)
                      |+.|++|++..+..        ...  +. |.+.|.+++++   ++.+++|           +.|+.+++|++.+.....
T Consensus        42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~  118 (365)
T 4h5i_A           42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL  118 (365)
T ss_dssp             CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE
T ss_pred             CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE
Confidence            56799999876532        122  22 78889888775   4456655           457889999987654321


Q ss_pred             --ee-----eecCCceeeEEEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCC
Q psy988           60 --WN-----EVEGQTKLITAANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGED  130 (408)
Q Consensus        60 --~~-----~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  130 (408)
                        ..     ....+...+.+++|+|||+++++++  .|++|++||+++.+....+.         |...|.+++|+|+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~---------~~~~V~~v~fspdg~  189 (365)
T 4h5i_A          119 EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---------TRGEVKDLHFSTDGK  189 (365)
T ss_dssp             EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE---------CSSCCCEEEECTTSS
T ss_pred             EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC---------CCCceEEEEEccCCc
Confidence              11     1223445689999999999987554  78999999999987655432         345799999999999


Q ss_pred             eEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc----eEEEeeeccceeeeeecccCCCc
Q psy988          131 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ----CIYIWKTHHDYAKFSSVRRDRND  206 (408)
Q Consensus       131 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~  206 (408)
                      ++++++. +.+++|+..+++.........+...+.+++|+|+++++++++.|+    .+++|++.........       
T Consensus       190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-------  261 (365)
T 4h5i_A          190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-------  261 (365)
T ss_dssp             EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-------
T ss_pred             eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-------
Confidence            9999885 457778777777655444333445588999999999999999887    6788887543221100       


Q ss_pred             cccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee
Q psy988          207 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC  286 (408)
Q Consensus       207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  286 (408)
                       .                                   ..+..+...|++++|+|+|++|++|+.|++|+|||+++++++.
T Consensus       262 -~-----------------------------------~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~  305 (365)
T 4h5i_A          262 -S-----------------------------------KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK  305 (365)
T ss_dssp             -E-----------------------------------EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             -e-----------------------------------eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence             0                                   1122455567777778888889999999999999999999988


Q ss_pred             EE-eeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          287 KY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       287 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                      .+ .+|..  .|++++|||||++||+|+.|++|+||++......
T Consensus       306 ~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~  347 (365)
T 4h5i_A          306 IFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLPLNYAN  347 (365)
T ss_dssp             EETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred             EecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence            76 56655  8999999999999999999999999999765433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-38  Score=276.58  Aligned_cols=296  Identities=11%  Similarity=0.131  Sum_probs=221.1

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEec-CCCEEEEEecCCEEEEEeccCCe
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCE-NGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ....++++|+...++++++.||.|+||++.....  .....+.+|...|.+++|+| ++++|++++.||.|++|++.+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            4456888883333445678899999999966422  12246789999999999999 99999999999999999998864


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCcccceee--cCccccccceEEEEecCCCEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKY--KGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      ...... ........|...|.+++|+|++ +.|++++.||.|++||+++++....+  ..|.  ..+.+++|+|++++|+
T Consensus       116 ~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          116 LVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWSRDGALIC  192 (402)
T ss_dssp             CSSCBC-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC--SCEEEEEECTTSSCEE
T ss_pred             CccccC-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC--CceEEEEECCCCCEEE
Confidence            211000 0111123566899999999998 68999999999999999999888887  4554  4588999999999999


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCcccccc-ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      +++.||.|++||++++...            ..+ ..|..                                  ..+.++
T Consensus       193 ~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~----------------------------------~~~~~~  226 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVV------------AEKDRPHEG----------------------------------TRPVHA  226 (402)
T ss_dssp             EEETTSEEEEEETTTTEEE------------EEEECSSCS----------------------------------SSCCEE
T ss_pred             EEecCCcEEEEeCCCCcee------------eeeccCCCC----------------------------------CcceEE
Confidence            9999999999999764322            111 12211                                  125566


Q ss_pred             ccCCCCCeEEEe---cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeeccccCccccc
Q psy988          257 EPMPGEDKILVT---SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       257 ~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                      .|+|++++|+++   +.|+.|++||+++++.........+...+.+++|+|++++|+ +|+.||.|++|++.++..    
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~----  302 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP----  302 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT----
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc----
Confidence            677777778888   799999999999876533333323344788999999999996 566899999999987621    


Q ss_pred             cccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          333 VRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       333 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                             .+..+..  |...|.+++|+|                ++.++++  .|+.+++|++.+++
T Consensus       303 -------~~~~l~~~~~~~~v~~~~~sp----------------~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          303 -------FLHYLSMFSSKESQRGMGYMP----------------KRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             -------CEEEEEEECCSSCCSEEEECC----------------GGGSCGG--GTEEEEEEEEETTE
T ss_pred             -------ceEeecccccCCcccceEEec----------------cccccee--cceeEEEEEcCCCc
Confidence                   1334444  458999999999                7877764  46799999988754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=272.01  Aligned_cols=311  Identities=15%  Similarity=0.187  Sum_probs=209.3

Q ss_pred             CCceEEEEeccCCeeEeEEE--------------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ--------------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ   66 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~--------------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~   66 (408)
                      .||.|++||+.+++....+.              |...|.+++|+|.++.+|++++.||.|++||+.+++..  ..+. +
T Consensus        64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~  140 (408)
T 4a11_B           64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVFN-F  140 (408)
T ss_dssp             TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--EEEE-C
T ss_pred             CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--eecc-C
Confidence            38999999999887766654              99999999999977789999999999999999988765  3333 6


Q ss_pred             ceeeEEEEEecC---CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEE
Q psy988           67 TKLITAANFCEN---GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIR  142 (408)
Q Consensus        67 ~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~  142 (408)
                      ...+.++.|++.   +.++++++.||.|++||+++.+....+.        .|...|.+++|+|+++. +++++.||.|+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--------GHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--------CCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--------CCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            678899999884   4599999999999999999876544332        45679999999999985 88999999999


Q ss_pred             EEEccCcc-cceeecC-------------ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccc
Q psy988          143 LYDLRDLN-LSCKYKG-------------YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW  208 (408)
Q Consensus       143 i~d~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (408)
                      +||++++. ....+..             ..+...+.+++|+|++++|++++.||.|++||+.++.....          
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------  282 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV----------  282 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC----------
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee----------
Confidence            99998765 2222211             12334588999999999999999999999999976532211          


Q ss_pred             cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE
Q psy988          209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  288 (408)
Q Consensus       209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  288 (408)
                        ...+..                              ......+........+..+++++.++.|++||+.+++++..+
T Consensus       283 --~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          283 --NYGKVC------------------------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             --CCCCCC------------------------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             --cccccc------------------------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence              000000                              000001111112223455677788999999999999999999


Q ss_pred             eeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988          289 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       289 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                      .+|..  .|.+++|+|++++|++|+.||.|++|++.+..            .+.....+.   ....+.|.         
T Consensus       331 ~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------~~~~~~~~~---~~~~~~~~---------  384 (408)
T 4a11_B          331 KGHYK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE------------PVPDDDETT---TKSQLNPA---------  384 (408)
T ss_dssp             CCCSS--CEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred             ccCCC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC------------ccCCCCceE---eccccccc---------
Confidence            88765  88999999999999999999999999998862            222222221   22334442         


Q ss_pred             CCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          369 PDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                            ....+.+++.|+.+++|+.+..
T Consensus       385 ------~~~~~~~~~~~~~~~~W~~~~~  406 (408)
T 4a11_B          385 ------FEDAWSSSDEEGGTSAWSHPQF  406 (408)
T ss_dssp             ----------------------------
T ss_pred             ------cceeecccCccCceeecCCccc
Confidence                  3445667778999999987754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.3e-38  Score=273.43  Aligned_cols=271  Identities=16%  Similarity=0.213  Sum_probs=213.0

Q ss_pred             CceEEEEeccCCe----eEeEE-EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeE
Q psy988            2 DKTVRLWHISRKE----CLCCF-QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLIT   71 (408)
Q Consensus         2 Dg~i~vwd~~~~~----~~~~~-~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~   71 (408)
                      ||.|+||++....    .+..+ +|.+.|++++|+|.++++|++|+.||.|++||+.++..     .....+.+|...|.
T Consensus        56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~  135 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG  135 (402)
T ss_dssp             SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred             CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence            7999999996642    23334 49999999999997788999999999999999988743     22367889999999


Q ss_pred             EEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           72 AANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        72 ~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +++|+|++ .+|++++.||.|++||+++++....+.      ...|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence            99999998 699999999999999999876543321      12456799999999999999999999999999999998


Q ss_pred             cceee-cCccccccceEEEEecCCCEEEEe---ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          151 LSCKY-KGYVNVSSQIKASFSHDGKYIVSG---SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      .+..+ ..+.. ..+..+.|+|++++|++|   +.|+.|++||+++......          .....+..          
T Consensus       210 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~----------  268 (402)
T 2aq5_A          210 VVAEKDRPHEG-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS----------LQELDTSS----------  268 (402)
T ss_dssp             EEEEEECSSCS-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE----------EEECCCCS----------
T ss_pred             eeeeeccCCCC-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce----------EEeccCCC----------
Confidence            88877 45543 346789999999999999   7899999999975321100          00011223          


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCCee-eeEEeeccceeceeEEEEcC
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDLNL-SCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~s~  304 (408)
                                               .+.+++|+|++++|+ +++.|+.|++||+.+++. +..+..+.+...+.+++|+|
T Consensus       269 -------------------------~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp  323 (402)
T 2aq5_A          269 -------------------------GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP  323 (402)
T ss_dssp             -------------------------SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred             -------------------------ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence                                     344555555566665 566899999999998874 56666665556899999999


Q ss_pred             CCCEEEEecCCceEEEeecccc
Q psy988          305 DGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ++.++++  .++.+++|++.++
T Consensus       324 ~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          324 KRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             GGGSCGG--GTEEEEEEEEETT
T ss_pred             cccccee--cceeEEEEEcCCC
Confidence            9998875  4669999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.3e-36  Score=264.49  Aligned_cols=300  Identities=16%  Similarity=0.129  Sum_probs=232.9

Q ss_pred             eEEEEeccCC--eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeee---eecCCceeeEEEEEecC
Q psy988            4 TVRLWHISRK--ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN---EVEGQTKLITAANFCEN   78 (408)
Q Consensus         4 ~i~vwd~~~~--~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~   78 (408)
                      .|.+||..++  +.+..+.+...+.+++|+| ++.++++++.++.|++||+.+++.....   .+.+|...|.+++|+++
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH  180 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence            4555555445  5666666667788999999 9999999999999999999988766311   34578899999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecC
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ++++++++.|+.|++||+++.+......        .+...+.+++|+|+++.+++++ .++.|++||+++++....+..
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  252 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAYKATVD--------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK  252 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEE--------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred             CEEEEEECCCCEEEEEECCCceEEEEEc--------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence            9999999999999999999876654433        3456899999999999886655 789999999999887776665


Q ss_pred             ccccccceEEEEecCCCEEEEee--------cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGS--------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      +.   .+.+++|+|+++++++++        .||.|++||+.++....             ...+...+.+         
T Consensus       253 ~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-------------~~~~~~~~~~---------  307 (433)
T 3bws_A          253 IG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID-------------TIGPPGNKRH---------  307 (433)
T ss_dssp             CS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-------------EEEEEECEEE---------
T ss_pred             CC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe-------------eccCCCCcce---------
Confidence            33   377899999999999888        48899999987543211             1112223344         


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCe-EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  308 (408)
                                                ++|+|+++. +++++.++.|++||+.+++....+..   ...+.+++|+|+|++
T Consensus       308 --------------------------~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~  358 (433)
T 3bws_A          308 --------------------------IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNTIALSPDGKY  358 (433)
T ss_dssp             --------------------------EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSE
T ss_pred             --------------------------EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCeEEEcCCCCE
Confidence                                      445555543 45668999999999999988877753   235779999999999


Q ss_pred             EEEecC---------------CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCC
Q psy988          309 IVSGSE---------------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  373 (408)
Q Consensus       309 l~~~~~---------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s  373 (408)
                      |++++.               ||.|++||+.++            +.+..+.. ...+.+++|+|               
T Consensus       359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~------------~~~~~~~~-~~~~~~~~~s~---------------  410 (433)
T 3bws_A          359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD------------TVKEFWEA-GNQPTGLDVSP---------------  410 (433)
T ss_dssp             EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT------------EEEEEEEC-SSSEEEEEECT---------------
T ss_pred             EEEEecCCCccccccccccccceEEEEEECCCC------------cEEEEecC-CCCCceEEEcC---------------
Confidence            988776               579999999876            44444544 45789999999               


Q ss_pred             CcccEEEEEec-CCeEEEEeCCC
Q psy988          374 STGYVLVSADF-NGVIRVFLNKT  395 (408)
Q Consensus       374 ~~~~~l~s~~~-dg~v~iw~~~~  395 (408)
                       +|++|++++. |+.|++|++..
T Consensus       411 -dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          411 -DNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -TSCEEEEEETTTTEEEEEEETT
T ss_pred             -CCCEEEEEECCCCeEEEEEecC
Confidence             8999988775 99999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.4e-37  Score=261.74  Aligned_cols=317  Identities=13%  Similarity=0.110  Sum_probs=211.8

Q ss_pred             EEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE-EE
Q psy988            7 LWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VV   84 (408)
Q Consensus         7 vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~   84 (408)
                      ||++.+.+++.... |.+.|++++|+| ++++|++|+.++ +++|++.+++...  ....  ..+..+++.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIM--SQEM--RHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEE--EEEC--SCCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceee--eeec--CCeEEEEEcCCCCEEEEE
Confidence            57777788876666 999999999999 999999998765 7899988765442  2221  247788888888877 56


Q ss_pred             EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCcccccc
Q psy988           85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVNVSS  163 (408)
Q Consensus        85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~  163 (408)
                      ++.|+.|++||..+++....+.         +...|.++.++++.  ++++ .++.|++||+.++ +.+..+..   .  
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~---------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~--  139 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK---------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F--  139 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE---------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E--
T ss_pred             ECCccEEEEEECCCCcEEEEEE---------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C--
Confidence            7788999999999987665443         23489999998753  4444 4789999999987 66655544   1  


Q ss_pred             ceEEEEecCCCEEEE--eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          164 QIKASFSHDGKYIVS--GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      ...+++++  .++++  |+.+|.|++||+.++........               ....                 ....
T Consensus       140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~---------------~~~~-----------------~~~~  185 (355)
T 3vu4_A          140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQ---------------GVQQ-----------------KAIL  185 (355)
T ss_dssp             EEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------------------
T ss_pred             CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccc---------------cccc-----------------cccC
Confidence            22356666  56665  68899999999976421100000               0000                 0001


Q ss_pred             c-eeeecCCCceeeeeccCCCCCeEEEecCCCe-EEEEEcCCCeeeeEEe-e-ccceeceeEEEEcCCCCEEEEecCCce
Q psy988          242 T-GYVLNATGRKISGIEPMPGEDKILVTSNDSR-IRLYDLRDLNLSCKYK-G-YVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       242 ~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                      . ...+..|...|.+++|+|++++|++++.|++ |++||+++++++..+. + |.  ..|.+++|+|++++|++++.|+.
T Consensus       186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~--~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR--ADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC--SCEEEEEECTTSCEEEEEETTCE
T ss_pred             cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC--CcEEEEEECCCCCEEEEEECCCE
Confidence            1 2344567777888888888889999999998 9999999999999988 3 44  48999999999999999999999


Q ss_pred             EEEeeccccCccccc-ccc--------Ccccccee---eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988          318 IYIWKTHHDYAKFSS-VRR--------DRNDFWEG---IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       318 i~iw~~~~~~~~~~~-~~~--------~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                      |++||+......... +..        ..+ ....   ...+......++|++                +++.|++++.|
T Consensus       264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~----------------d~~~l~~~~~d  326 (355)
T 3vu4_A          264 LHVFEIFNDQDNKRHALKGWINMKYFQSEW-SLCNFKLSVDKHVRGCKIAWIS----------------ESSLVVVWPHT  326 (355)
T ss_dssp             EEEEESSCCSCCCSEETTTTEECCCCCCSS-CSEEEECCCCTTCCCCEEEESS----------------SSEEEEEETTT
T ss_pred             EEEEEccCCCCcccccccceeecccccccc-ceeEEEeccCCCCCceEEEEeC----------------CCCEEEEEeCC
Confidence            999999765321100 000        000 0000   011122346789999                99999999999


Q ss_pred             CeEEEEeCCCCCCc
Q psy988          386 GVIRVFLNKTKPKH  399 (408)
Q Consensus       386 g~v~iw~~~~~~~~  399 (408)
                      |.+++|++..++..
T Consensus       327 g~~~~~~~~~~~~~  340 (355)
T 3vu4_A          327 RMIETFKVVFDDEM  340 (355)
T ss_dssp             TEEEEEEEEEETTT
T ss_pred             CeEEEEEEEcCCCC
Confidence            99999998776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=267.14  Aligned_cols=271  Identities=13%  Similarity=0.100  Sum_probs=207.3

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSND  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  138 (408)
                      ..+.+|...|++++|+|++++|++++.||.|++|++..........      ...|...|.+++|+++  +++|++++.|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------LTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE------ecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            5788999999999999999999999999999999998543222111      2346679999999987  8999999999


Q ss_pred             CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988          139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  214 (408)
Q Consensus       139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      |.|++||+++++  ....+..+.  ..+.+++|+|+  +++|++++.|+.|++||+......          ....+..|
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------~~~~~~~~  146 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------SPIIIDAH  146 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------CEEEEECC
T ss_pred             CEEEEEEcCCCceeEeeeecCCC--cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------eeEEecCC
Confidence            999999999887  455555544  44889999999  999999999999999999754211          11234456


Q ss_pred             cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe----eeeEEee
Q psy988          215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN----LSCKYKG  290 (408)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~  290 (408)
                      ...+.+++|+|......                      ......+++.+|++++.|+.|++||+++++    ....+.+
T Consensus       147 ~~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          147 AIGVNSASWAPATIEED----------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             TTCEEEEEECCCC--------------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCceEEEEEcCcccccc----------------------ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            66677777766432110                      011114478899999999999999998764    3344555


Q ss_pred             ccceeceeEEEEcCC---CCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          291 YVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      |..  .+.+++|+|+   +++|++++.||.|++||+..+....       ...+.....|...|.+++|+|         
T Consensus       205 h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~---------  266 (379)
T 3jrp_A          205 HSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSL---------  266 (379)
T ss_dssp             CSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-------EEEESSSSCCSSCEEEEEECS---------
T ss_pred             ccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc-------eeeeeccccCCCcEEEEEEcC---------
Confidence            544  8899999999   8999999999999999998753211       012233345889999999999         


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                             ++++|++++.||.|++|++...
T Consensus       267 -------~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          267 -------SGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             -------SSCCEEEEESSSSEEEEEEEET
T ss_pred             -------CCCEEEEecCCCcEEEEeCCCC
Confidence                   9999999999999999999853

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-36  Score=252.30  Aligned_cols=258  Identities=17%  Similarity=0.266  Sum_probs=207.4

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEEEecC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      .||.|++||+.+++....+. |...|.+++|+| ++++|++++.||.|++|++.... ......+.+|...|.++.|  +
T Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~  113 (313)
T 3odt_A           37 RDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q  113 (313)
T ss_dssp             TTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred             cCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence            38999999999999888776 999999999999 99999999999999999987653 1223577899999999999  6


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ++++++++.||.|++||  ..+.....        ..|...+.++.|.| +++.+++++.||.|++||.  .+....+..
T Consensus       114 ~~~l~~~~~d~~i~~~d--~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~  181 (313)
T 3odt_A          114 DGVVISGSWDKTAKVWK--EGSLVYNL--------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSG  181 (313)
T ss_dssp             TTEEEEEETTSEEEEEE--TTEEEEEE--------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECS
T ss_pred             CCEEEEEeCCCCEEEEc--CCcEEEec--------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEec
Confidence            78999999999999999  33322222        23557899999988 8999999999999999994  344455554


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      . ....+.+++|+|++. +++++.||.|++||++++.            .+..+..|...                    
T Consensus       182 ~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~--------------------  227 (313)
T 3odt_A          182 I-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD------------VLRTYEGHESF--------------------  227 (313)
T ss_dssp             S-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC------------EEEEEECCSSC--------------------
T ss_pred             c-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh------------hhhhhhcCCce--------------------
Confidence            1 224488899999998 9999999999999996532            22333344444                    


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                                     |.+++|+|++ .|++++.||.|++||+++++....+..+..  .+.+++|+|+++ +++++.||.
T Consensus       228 ---------------i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          228 ---------------VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNL  288 (313)
T ss_dssp             ---------------EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSC
T ss_pred             ---------------EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCc
Confidence                           4455555555 478899999999999999999999887755  789999999998 556889999


Q ss_pred             EEEeecccc
Q psy988          318 IYIWKTHHD  326 (408)
Q Consensus       318 i~iw~~~~~  326 (408)
                      |++|++.++
T Consensus       289 i~iw~~~~~  297 (313)
T 3odt_A          289 VRIFSQEKS  297 (313)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEeCCCC
Confidence            999999876

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-36  Score=263.95  Aligned_cols=290  Identities=10%  Similarity=0.067  Sum_probs=220.4

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---ceeeeeec----------------------------------
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK---VAVWNEVE----------------------------------   64 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~----------------------------------   64 (408)
                      ..++.+++|+| +|++|+++ .++.|++||+.+++   ..  ..+.                                  
T Consensus         4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFA--GKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEE--EEEECCC-------------------------------
T ss_pred             cccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceee--eecCCccccccccccccchhhccccccccccccccccC
Confidence            45789999999 88866665 57899999998887   32  1222                                  


Q ss_pred             --------------------CCceeeEEEEEecCCCEE-EEEecCCEEEEEecc--CCeeeEEEEEeeccccccCCCCeE
Q psy988           65 --------------------GQTKLITAANFCENGKFA-VVGSYDGRCIFYTTD--QLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        65 --------------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                                          +|...|.+++|+|++++| ++++.||.|++||+.  +++....+...      .+...|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~  153 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPN  153 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEE
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCce
Confidence                                344479999999999996 889999999999998  66655444321      2346899


Q ss_pred             EEeeCCCCCeEEEeeCCCeEEEEEccCcccce----eecCccccccceEEEEecC---CCEEEEeecCceEEEeeeccce
Q psy988          122 GIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC----KYKGYVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       122 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                      +++|+|++++|++++.+|.|++|++.+++...    .+.+|.  ..+.+++|+|+   +++|++++.|+.|++||+.++.
T Consensus       154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS--SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc--CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence            99999999999999999999999998877554    455544  45889999999   9999999999999999986532


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                      ..            ..+                                  ...|...|.+++|+ ++++|++++.|+.|
T Consensus       232 ~~------------~~~----------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v  264 (450)
T 2vdu_B          232 IV------------DKW----------------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKI  264 (450)
T ss_dssp             CE------------EEE----------------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEE
T ss_pred             ee------------eee----------------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeE
Confidence            11            110                                  11344556666667 77788999999999


Q ss_pred             EEEEcCCCeeeeEEeec-----------------------cceeceeEEEEcCCCCEEEEec-CCceEEEeec--cccCc
Q psy988          275 RLYDLRDLNLSCKYKGY-----------------------VNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKT--HHDYA  328 (408)
Q Consensus       275 ~i~d~~~~~~~~~~~~~-----------------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~--~~~~~  328 (408)
                      ++||+.+++++..+..+                       .....+.+++|+|++++|++++ .|+.|++|++  ..+. 
T Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~-  343 (450)
T 2vdu_B          265 FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG-  343 (450)
T ss_dssp             EEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT-
T ss_pred             EEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC-
Confidence            99999999988887643                       1234678999999999999988 8999999999  3321 


Q ss_pred             cccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec------CCeEEEEeCCCC
Q psy988          329 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF------NGVIRVFLNKTK  396 (408)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~  396 (408)
                              ....+..+..| ..|.+++|+|                ++.+++.++.      +..|++|.+...
T Consensus       344 --------~l~~~~~~~~~-~~v~~~~~~~----------------~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          344 --------DLALKQIITFP-YNVISLSAHN----------------DEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             --------CEEEEEEEECS-SCEEEEEEET----------------TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             --------ceeeccEeccC-CceEEEEecC----------------CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence                    01345566677 8899999999                6544444443      556888887544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.8e-35  Score=255.10  Aligned_cols=318  Identities=11%  Similarity=0.074  Sum_probs=233.2

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |+.|++||+.+++++..+.+...+.+++|+| ++++| ++++.|+.|++||+.+++..  ..+..+. .+.+++|+|+++
T Consensus        11 d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~~~~-~v~~~~~spdg~   86 (391)
T 1l0q_A           11 SDNISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVI--ATVPAGS-SPQGVAVSPDGK   86 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEE--EEEECSS-SEEEEEECTTSS
T ss_pred             CCEEEEEECCCCeEEEEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEE--EEEECCC-CccceEECCCCC
Confidence            7999999999999999998767799999999 88876 67778999999999988766  4555444 899999999999


Q ss_pred             EEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeE-EEeeCCCeEEEEEccCcccceeecCc
Q psy988           81 FAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKI-LVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      +|++++ .++.|++||+.+++......         +...+.+++|+|+++.+ ++++.++.|++||+++++....+..+
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNTVAGTVK---------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE---------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEe---------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence            886554 66999999999887654433         12368999999999988 56777999999999998887777654


Q ss_pred             cccccceEEEEecCCCEE-EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          159 VNVSSQIKASFSHDGKYI-VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      ..   +..++|+|+++++ ++++.++.|++||++++.....            +                          
T Consensus       158 ~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~--------------------------  196 (391)
T 1l0q_A          158 RS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------------V--------------------------  196 (391)
T ss_dssp             SS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------------E--------------------------
T ss_pred             CC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------------E--------------------------
Confidence            33   5689999999987 5677889999999875422110            0                          


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEec---CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE-EEec
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTS---NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGS  313 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~  313 (408)
                                .+...+.+++|+|+++++++++   .++.|++||+.+++.+..+..+.   .+.+++|+|++++| ++++
T Consensus       197 ----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          197 ----------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             ----------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEET
T ss_pred             ----------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcC
Confidence                      1122345566666677677776   68999999999999888877643   46789999999988 5778


Q ss_pred             CCceEEEeeccccCccccccccCccccceeeeeeccceE---EEEecCCchhhhhccCCC----CCCC--cccEEEEEec
Q psy988          314 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT---CAVFAPCPELIIAQMEPD----KSES--TGYVLVSADF  384 (408)
Q Consensus       314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~~~~~~~~~----~~s~--~~~~l~s~~~  384 (408)
                      .|+.|++||+.++            +.+..+..|..+..   .+.+.|++..+..+.-..    ...+  +...+...+.
T Consensus       264 ~d~~v~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~  331 (391)
T 1l0q_A          264 FXNTVSVIDTATN------------TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSK  331 (391)
T ss_dssp             TTTEEEEEETTTT------------EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCB
T ss_pred             CCCEEEEEECCCC------------cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCC
Confidence            8999999999886            34444444443321   244444332221100000    0000  1145677778


Q ss_pred             CCeEEEEeCCCCCC
Q psy988          385 NGVIRVFLNKTKPK  398 (408)
Q Consensus       385 dg~v~iw~~~~~~~  398 (408)
                      |..+++|++..+..
T Consensus       332 ~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          332 DATEWKWDFGDGSS  345 (391)
T ss_dssp             SCSEEEEECSSSCE
T ss_pred             CceEEEEECCCCcc
Confidence            99999999987653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-38  Score=270.60  Aligned_cols=215  Identities=13%  Similarity=0.062  Sum_probs=162.5

Q ss_pred             CceEEEEeccCC--eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeeeeecCCceeeEEEEEec
Q psy988            2 DKTVRLWHISRK--ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         2 Dg~i~vwd~~~~--~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      ||.|+|||+.++  +++..+. |.+.|.+++|+| ++++|++++.|+.|++||+.+++ ......+..|...|.+++|+|
T Consensus        32 d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  110 (377)
T 3dwl_C           32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP  110 (377)
T ss_dssp             SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred             CCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence            899999999998  6777776 999999999999 89999999999999999999877 333367788999999999999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---------
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---------  148 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------  148 (408)
                      ++++|++++.|+.|++||+++.+......  ..  ...|...|.+++|+|++++|++++.|+.|++||++.         
T Consensus       111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~--~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  186 (377)
T 3dwl_C          111 NEDKFAVGSGARVISVCYFEQENDWWVSK--HL--KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA  186 (377)
T ss_dssp             TSSCCEEEESSSCEEECCC-----CCCCE--EE--CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred             CCCEEEEEecCCeEEEEEECCcccceeee--Ee--ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence            99999999999999999998765311000  11  112667999999999999999999999999999953         


Q ss_pred             ---------cccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          149 ---------LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                               +++...+ .|  ...+.+++|+|++++|++++.||.|++||+.++....        ..+..+..|...+.
T Consensus       187 ~~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--------~~~~~~~~~~~~v~  255 (377)
T 3dwl_C          187 SVWGSRLPFNTVCAEY-PS--GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP--------RALITVKLSQLPLR  255 (377)
T ss_dssp             CSSCSCCCEEEEEECC-CC--SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE--------EECCCEECSSSCEE
T ss_pred             cccccccchhhhhhcc-cC--CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc--------eeeEeecCCCCceE
Confidence                     3334444 33  3458899999999999999999999999997643210        11355667777778


Q ss_pred             EEEEeCCcceeee
Q psy988          220 CAVFAPCPELIIA  232 (408)
Q Consensus       220 ~~~~~~~~~~~~~  232 (408)
                      +++|+|+++++++
T Consensus       256 ~~~~s~~~~~l~~  268 (377)
T 3dwl_C          256 SLLWANESAIVAA  268 (377)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEcCCCCEEEE
Confidence            8888777766544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.5e-36  Score=261.58  Aligned_cols=311  Identities=14%  Similarity=0.193  Sum_probs=222.3

Q ss_pred             eCCceEEEEEcCCCC----------CEEEEEeC----CCcEEEEecC--------------------------CCCceee
Q psy988           21 HIDFVTAICFHPRDD----------RYFLSGSL----DGKLRLWNIP--------------------------DKKVAVW   60 (408)
Q Consensus        21 h~~~v~~~~~sp~~~----------~~l~t~~~----dg~i~iw~~~--------------------------~~~~~~~   60 (408)
                      -.-+..++.|.| +.          .+++.|+.    ...|.++++.                          +++. ..
T Consensus        44 l~wp~l~~~~~p-~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~  121 (430)
T 2xyi_A           44 LEWPSLTAQWLP-DVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKI-EI  121 (430)
T ss_dssp             CSSCCSCEEECS-CCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CE-EE
T ss_pred             CCCCceEEEECc-ccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCce-EE
Confidence            446778899999 43          46777765    3457777543                          1111 12


Q ss_pred             eeecCCceeeEEEEEecC-CCEEEEEecCCEEEEEeccCCeeeEE--EEEeeccccccCCCCeEEEeeCCCCC-eEEEee
Q psy988           61 NEVEGQTKLITAANFCEN-GKFAVVGSYDGRCIFYTTDQLKYHTQ--IHVRSTRGKNATGRKISGIEPMPGED-KILVTS  136 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  136 (408)
                      .....|.+.|++++|+|+ +.+|++++.+|.|++|++........  ...........|...+.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            455678999999999997 78999999999999999986210000  00001111225667899999999988 999999


Q ss_pred             CCCeEEEEEccCccc-------ceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccc
Q psy988          137 NDSRIRLYDLRDLNL-------SCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW  208 (408)
Q Consensus       137 ~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (408)
                      .||.|++||+.++..       ...+..|.  ..+.+++|+| ++.+|++++.||.|++||+++...         ....
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~  270 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS  270 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCC--CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence            999999999987432       23344443  4488999999 678899999999999999975310         1122


Q ss_pred             cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC-CeeeeE
Q psy988          209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCK  287 (408)
Q Consensus       209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~  287 (408)
                      ..+..|...+.+++|+|++..                                  ++++++.||.|++||+++ ...+..
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~----------------------------------~l~tg~~dg~v~vwd~~~~~~~~~~  316 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEF----------------------------------ILATGSADKTVALWDLRNLKLKLHS  316 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTT----------------------------------EEEEEETTSEEEEEETTCTTSCSEE
T ss_pred             eEeecCCCCeEEEEeCCCCCC----------------------------------EEEEEeCCCeEEEEeCCCCCCCeEE
Confidence            233344555555555554332                                  478899999999999998 566777


Q ss_pred             EeeccceeceeEEEEcCCCC-EEEEecCCceEEEeeccccCcccccc--ccCccccceeeeeeccceEEEEecCCchhhh
Q psy988          288 YKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSV--RRDRNDFWEGIKAHNAVVTCAVFAPCPELII  364 (408)
Q Consensus       288 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  364 (408)
                      +..|..  .+.+++|+|+++ +|++++.||.|++||+..........  ......++..+.+|...|++++|+|      
T Consensus       317 ~~~h~~--~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p------  388 (430)
T 2xyi_A          317 FESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP------  388 (430)
T ss_dssp             EECCSS--CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS------
T ss_pred             eecCCC--CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC------
Confidence            777655  889999999995 68999999999999998732111000  0011245666778999999999999      


Q ss_pred             hccCCCCCCCccc-EEEEEecCCeEEEEeCCCC
Q psy988          365 AQMEPDKSESTGY-VLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       365 ~~~~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~  396 (408)
                                ++. +|++++.||.|++|++...
T Consensus       389 ----------~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          389 ----------NEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             ----------SSTTEEEEEETTSEEEEEEECHH
T ss_pred             ----------CCCCEEEEEECCCCEEEeEcccc
Confidence                      787 9999999999999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=263.85  Aligned_cols=287  Identities=16%  Similarity=0.202  Sum_probs=206.7

Q ss_pred             CCceEEEEeccCCe-----------eEeEEE-eC------------CceEEEEEcCCCC--CEEEEEeCCCcEEEEecCC
Q psy988            1 MDKTVRLWHISRKE-----------CLCCFQ-HI------------DFVTAICFHPRDD--RYFLSGSLDGKLRLWNIPD   54 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~-----------~~~~~~-h~------------~~v~~~~~sp~~~--~~l~t~~~dg~i~iw~~~~   54 (408)
                      .||.|+|||+.+++           +...+. |.            +.|++++|+| ++  .+|++++.|+.|++|++.+
T Consensus        48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~  126 (447)
T 3dw8_B           48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWKISE  126 (447)
T ss_dssp             TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEEEEE
T ss_pred             CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEeccc
Confidence            38999999999877           455665 88            8899999999 76  7999999999999999876


Q ss_pred             CCcee-------------------------------------e-eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEec
Q psy988           55 KKVAV-------------------------------------W-NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTT   96 (408)
Q Consensus        55 ~~~~~-------------------------------------~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~   96 (408)
                      +....                                     . ....+|...|.+++|+|++++|+++ .|+.|++||+
T Consensus       127 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~  205 (447)
T 3dw8_B          127 RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHL  205 (447)
T ss_dssp             EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEET
T ss_pred             ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEEC
Confidence            43210                                     0 1146799999999999999999998 7999999999


Q ss_pred             cCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEEEccCccc----ceeecCcccc----------
Q psy988           97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNL----SCKYKGYVNV----------  161 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~----------  161 (408)
                      +..................|...|.+++|+|++ +.|++++.||.|++||+++++.    ...+..+...          
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (447)
T 3dw8_B          206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEII  285 (447)
T ss_dssp             TEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHT
T ss_pred             CCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccC
Confidence            854322221111122345677899999999998 8999999999999999998886    5666665431          


Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      ..+.+++|+|++++|++++. +.|++||++...           ..+..+..|...+..+..                  
T Consensus       286 ~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~-----------~~~~~~~~~~~~~~~l~~------------------  335 (447)
T 3dw8_B          286 SSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN-----------RPVETYQVHEYLRSKLCS------------------  335 (447)
T ss_dssp             TCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-----------SCSCCEESCGGGTTTHHH------------------
T ss_pred             ceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-----------cccceeeccccccccccc------------------
Confidence            25889999999999999998 999999996421           122222222211000000                  


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec------------------------------
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY------------------------------  291 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------  291 (408)
                        ......-..+..++|+|++++|++++.||.|++||+.+++.+. +..+                              
T Consensus       336 --~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (447)
T 3dw8_B          336 --LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDS  412 (447)
T ss_dssp             --HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred             --cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccc
Confidence              0000000113347888999999999999999999999887653 2222                              


Q ss_pred             -cceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          292 -VNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       292 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                       .....+..++|+|++++||+++.++ +++|..
T Consensus       413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          413 LDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence             1123577899999999999998775 778764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-37  Score=285.49  Aligned_cols=257  Identities=12%  Similarity=0.245  Sum_probs=202.1

Q ss_pred             EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--CCEEEEEecCCEEEEEecc
Q psy988           20 QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--GKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~   97 (408)
                      +|.+.|++++|+| ++++|++|+.||.|++||+.++.......+.+|...|.+++|+|+  +++|++++.||.|++||+.
T Consensus         7 gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            4999999999999 999999999999999999986655555788999999999999988  9999999999999999999


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec----
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH----  171 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----  171 (408)
                      +++......      ...|...|.+++|+|+  ++.+++++.||.|++||++++..........+...+.+++|+|    
T Consensus        86 ~~~~~~~~~------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             CCccccccc------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            875322221      2346679999999999  9999999999999999999875433333233345588999999    


Q ss_pred             ---------CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          172 ---------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       172 ---------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                               ++++|++|+.||.|++||++++....        .....+.                              
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------~~~~~~~------------------------------  201 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------VLESTLE------------------------------  201 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEE--------EEEEEEC------------------------------
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccc--------eeeeeec------------------------------
Confidence                     58999999999999999997532110        1112223                              


Q ss_pred             eeeecCCCceeeeeccCCC---CCeEEEecCCCeEEEEEcCCCeeee---EEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          243 GYVLNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNLSC---KYKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                           .|...|.+++|+|+   ++++++++.||.|++||+++++...   ......+...+.+++|+|+|++|++|+.||
T Consensus       202 -----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          202 -----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             -----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred             -----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence                 44455566666666   6778999999999999999864211   111222344788999999999999999999


Q ss_pred             eEEEeecccc
Q psy988          317 CIYIWKTHHD  326 (408)
Q Consensus       317 ~i~iw~~~~~  326 (408)
                      .|++|++..+
T Consensus       277 ~I~vwd~~~~  286 (753)
T 3jro_A          277 KVTLWKENLE  286 (753)
T ss_dssp             CEECCBCCSS
T ss_pred             EEEEEecCCC
Confidence            9999999854

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=264.54  Aligned_cols=270  Identities=10%  Similarity=0.059  Sum_probs=201.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ....|.+++|+| ||+++||++.|++|+  |...++     .+.+|...|.+++|+|+|       .++.+.+|+.+...
T Consensus        14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~-----~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~   78 (588)
T 2j04_A           14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAK-----DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG   78 (588)
T ss_dssp             CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCS-----CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred             hhccEEEEEECC-CCCEEEEEcCCceee--cccccc-----eecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence            568999999999 999999999999999  644443     447999999999999999       45655565544222


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc---cccceEEEEecCCCEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN---VSSQIKASFSHDGKYIV  177 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~  177 (408)
                      ..      .    ..+...|.+++|+|+|..|++++.||.|++||.+.  ++..+. +..   ...+.+++|+|||++|+
T Consensus        79 ~~------~----~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LA  145 (588)
T 2j04_A           79 LL------N----SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIV  145 (588)
T ss_dssp             SS------T----TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred             Ee------e----cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEE
Confidence            10      0    12246899999999999999999999999999644  444444 332   23478999999999999


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCcccccc----ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      +|+.||+|++||+..+....     ..--.+..+    .+|...|.+++|+|                            
T Consensus       146 sgs~DGtVkIWd~~~~~l~~-----~~~i~l~ti~~~~~gh~~~V~sVawSP----------------------------  192 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNSENT-----PEFYFESSIRLSDAGSKDWVTHIVWYE----------------------------  192 (588)
T ss_dssp             EEETTSEEEEEECCCCTTTC-----CCCEEEEEEECSCTTCCCCEEEEEEET----------------------------
T ss_pred             EEcCCCEEEEEECCCCcccc-----ccceeeeeeecccccccccEEEEEEcC----------------------------
Confidence            99999999999997532100     000001222    33444555555555                            


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeee---eEEe-eccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS---CKYK-GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                             +|  +++++.|++|++||+.+++..   .++. +|.  ..|.+++|+  |+.||+++ ++.|++||+.++   
T Consensus       193 -------dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~---  255 (588)
T 2j04_A          193 -------DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY---  255 (588)
T ss_dssp             -------TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT---
T ss_pred             -------Cc--EEEEeCCCeEEEEECCCCccccceeeeccccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC---
Confidence                   55  567788999999999887742   4553 443  478899999  68999987 699999999875   


Q ss_pred             ccccccCccccceeeeeeccceEEEEe--cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          330 FSSVRRDRNDFWEGIKAHNAVVTCAVF--APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                               .......+|.+.|..++|  +|                ++..|++++.||+ ++|...
T Consensus       256 ---------~~~~~~~gh~~~V~~va~~~s~----------------d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          256 ---------SISSLKTGSLENFHIIPLNHEK----------------ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ---------EEEEEECSCCSCCCEEEETTCS----------------SCEEEEECSSCEE-EEEESS
T ss_pred             ---------eEEEEEcCCCceEEEEEeeeCC----------------CCCEEEEEcCCCC-EEEeec
Confidence                     232223389999999999  99                8999999999999 999976

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7e-36  Score=262.14  Aligned_cols=254  Identities=20%  Similarity=0.342  Sum_probs=207.5

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ||+|++||+.+++.+..+. |.+.|.+++|   ++++|++|+.||.|++||+.+++..  ..+.+|...|.+++|+  +.
T Consensus       152 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~--~~  224 (435)
T 1p22_A          152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML--NTLIHHCEAVLHLRFN--NG  224 (435)
T ss_dssp             SSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEE--EEECCCCSCEEEEECC--TT
T ss_pred             CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCcEEEEEEc--CC
Confidence            8999999999999999887 9999999998   5679999999999999999998876  6888999999999996  45


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      ++++++.||.|++||+.+.........     ..+|...|.++.|  +++++++++.||.|++||+++++.+..+..+..
T Consensus       225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  297 (435)
T 1p22_A          225 MMVTCSKDRSIAVWDMASPTDITLRRV-----LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR  297 (435)
T ss_dssp             EEEEEETTSCEEEEECSSSSCCEEEEE-----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEeeCCCcEEEEeCCCCCCceeeeE-----ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence            999999999999999988765432211     2356678999999  688999999999999999999999888887665


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      .  +.++.+  +++++++|+.||.|++||++++.            .+..+.+|...+.++                   
T Consensus       298 ~--v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~------------~~~~~~~h~~~v~~~-------------------  342 (435)
T 1p22_A          298 G--IACLQY--RDRLVVSGSSDNTIRLWDIECGA------------CLRVLEGHEELVRCI-------------------  342 (435)
T ss_dssp             C--EEEEEE--ETTEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCEEEE-------------------
T ss_pred             c--EEEEEe--CCCEEEEEeCCCeEEEEECCCCC------------EEEEEeCCcCcEEEE-------------------
Confidence            4  666666  57899999999999999997542            223344444444444                   


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe---------eeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN---------LSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                                      ++  ++.+|++|+.||.|++||+.+++         .+..+.+|..  .|.+++|  ++++|++
T Consensus       343 ----------------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s  400 (435)
T 1p22_A          343 ----------------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVS  400 (435)
T ss_dssp             ----------------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEE
T ss_pred             ----------------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEE
Confidence                            44  45678999999999999997765         6777777655  7888888  7889999


Q ss_pred             ecCCceEEEeecccc
Q psy988          312 GSENQCIYIWKTHHD  326 (408)
Q Consensus       312 ~~~dg~i~iw~~~~~  326 (408)
                      |+.||.|++||+.+.
T Consensus       401 ~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          401 SSHDDTILIWDFLND  415 (435)
T ss_dssp             CCSSSEEEEEC----
T ss_pred             EeCCCEEEEEECCCC
Confidence            999999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.1e-36  Score=262.88  Aligned_cols=261  Identities=13%  Similarity=0.178  Sum_probs=201.1

Q ss_pred             EeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC--------CCceeeeeecCCceeeEEEEEecCCC-EEEEEe
Q psy988           16 LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD--------KKVAVWNEVEGQTKLITAANFCENGK-FAVVGS   86 (408)
Q Consensus        16 ~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   86 (408)
                      ...+.|.+.|++++|+|+++.+|++++.||.|++|++..        +.......+.+|...|.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344569999999999994378999999999999999986        22333467889999999999999988 999999


Q ss_pred             cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCc---ccceeecCccccc
Q psy988           87 YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNVS  162 (408)
Q Consensus        87 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~  162 (408)
                      .||.|++|++......... .........|...|.+++|+| ++..|++++.||.|++||++++   +....+..+.  .
T Consensus       202 ~dg~i~vwd~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~  278 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT--A  278 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGE-EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS--S
T ss_pred             CCCeEEEEeCCCCCCCCce-eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC--C
Confidence            9999999999874321110 111112235677899999999 6778889999999999999987   4555555554  4


Q ss_pred             cceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCC
Q psy988          163 SQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  241 (408)
Q Consensus       163 ~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
                      .+.+++|+|++. .|++|+.||.|++||++...           ..+..+..|...|.+++|+|+++.            
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----------~~~~~~~~h~~~v~~i~~sp~~~~------------  335 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----------LKLHSFESHKDEIFQVQWSPHNET------------  335 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEEEECCSSCEEEEEECSSCTT------------
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----------CCeEEeecCCCCEEEEEECCCCCC------------
Confidence            488999999987 68899999999999997521           223344455555666655555433            


Q ss_pred             ceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--------------eeeeEEeeccceeceeEEEEcCCCC
Q psy988          242 TGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--------------NLSCKYKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~  307 (408)
                                            +|++++.|+.|++||+...              +++..+.+|..  .+.+++|+|+++
T Consensus       336 ----------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~  391 (430)
T 2xyi_A          336 ----------------------ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEP  391 (430)
T ss_dssp             ----------------------EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSST
T ss_pred             ----------------------EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCC
Confidence                                  3788999999999999862              44444445443  789999999999


Q ss_pred             -EEEEecCCceEEEeecccc
Q psy988          308 -YIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       308 -~l~~~~~dg~i~iw~~~~~  326 (408)
                       +|++++.||.|++|++...
T Consensus       392 ~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          392 WIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TEEEEEETTSEEEEEEECHH
T ss_pred             CEEEEEECCCCEEEeEcccc
Confidence             8999999999999999764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.9e-35  Score=250.32  Aligned_cols=280  Identities=9%  Similarity=0.057  Sum_probs=210.7

Q ss_pred             CCceEEEEeccCCe----eEeEEEeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEec-CCCCceeeeeecC--CceeeEE
Q psy988            1 MDKTVRLWHISRKE----CLCCFQHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNI-PDKKVAVWNEVEG--QTKLITA   72 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~----~~~~~~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~--~~~~v~~   72 (408)
                      .||.|+|||+.+++    ......|...|.+++|+| +++ +|++|+.||.|++||+ .+++.   ..+.+  |...|.+
T Consensus        31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~  106 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICR  106 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEE
T ss_pred             CCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEE
Confidence            38999999999888    666667999999999999 899 9999999999999999 87765   46778  9999999


Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-ccc
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNL  151 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~  151 (408)
                      ++|+| +++|++++.|+.|++||+++.................+...+.+++|+|++  +++++.++.|++||+++ +..
T Consensus       107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~  183 (342)
T 1yfq_A          107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD  183 (342)
T ss_dssp             EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred             EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence            99999 999999999999999998751100000001111112256789999999877  99999999999999998 554


Q ss_pred             ceeecCccccccceEEEEec-CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          152 SCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      ............+.+++|+| +++++++++.||.|++|+++.....      ........+..|....            
T Consensus       184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~------------  245 (342)
T 1yfq_A          184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD------YNSSKRFAFRCHRLNL------------  245 (342)
T ss_dssp             CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS------TTCTTCEEEECCCCCT------------
T ss_pred             cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc------cccccceeeecccccc------------
Confidence            32222222334588999999 9999999999999999998653000      0001111122221100            


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l  309 (408)
                                    .-..+...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ..  .|.+++  |++++|
T Consensus       246 --------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l  307 (342)
T 1yfq_A          246 --------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNIL  307 (342)
T ss_dssp             --------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEE
T ss_pred             --------------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeE
Confidence                          00133457778888888888999999999999999999999888876 54  678888  999999


Q ss_pred             EEecCCce-EEEeec
Q psy988          310 VSGSENQC-IYIWKT  323 (408)
Q Consensus       310 ~~~~~dg~-i~iw~~  323 (408)
                      ++++.||. .+.|..
T Consensus       308 ~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          308 CLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEECTHHHHCSSS
T ss_pred             EEEecCCcccccccc
Confidence            99999998 555553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=276.60  Aligned_cols=272  Identities=13%  Similarity=0.095  Sum_probs=207.2

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC--CCeEEEeeCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG--EDKILVTSND  138 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  138 (408)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.+........      ..+|...|.+++|+|+  +++|++++.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~------l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------LTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE------ECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee------ccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            4678999999999999999999999999999999998543222111      2356789999999988  8999999999


Q ss_pred             CeEEEEEccCcc--cceeecCccccccceEEEEecC--CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc
Q psy988          139 SRIRLYDLRDLN--LSCKYKGYVNVSSQIKASFSHD--GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  214 (408)
Q Consensus       139 g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      |.|++||+++++  ....+..|.  ..+.+++|+|+  ++++++++.||.|++||++.+..          .....+..|
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----------~~~~~~~~~  144 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----------TSPIIIDAH  144 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----------CCCEEEECC
T ss_pred             CeEEEEECCCCcccccccccCCC--CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----------cceeEeecC
Confidence            999999999886  445555554  44889999999  99999999999999999976421          112234566


Q ss_pred             cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC----eeeeEEee
Q psy988          215 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL----NLSCKYKG  290 (408)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~  290 (408)
                      ...|.++.|+|.....                      .......+++.++++++.||.|++||++++    .....+.+
T Consensus       145 ~~~v~~l~~~p~~~~~----------------------~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  202 (753)
T 3jro_A          145 AIGVNSASWAPATIEE----------------------DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (753)
T ss_dssp             SSCEEEEEECCCC-------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCceEEEEecCccccc----------------------ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence            6777777777642110                      000111346788999999999999999877    44555666


Q ss_pred             ccceeceeEEEEcCC---CCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          291 YVNVSSQIKASFSHD---GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      |..  .|.+++|+|+   +++|++|+.||.|++||+.++....       .........|...|++++|+|         
T Consensus       203 h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~sp---------  264 (753)
T 3jro_A          203 HSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSL---------  264 (753)
T ss_dssp             CSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEECT---------
T ss_pred             CCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-------eeEEeccCCCCCceEEEEEcC---------
Confidence            554  8999999999   8999999999999999998763211       123334456889999999999         


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                             +|++|++++.||.|++|++.+..
T Consensus       265 -------dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          265 -------SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             -------TTCCEEEECSSSCEECCBCCSSS
T ss_pred             -------CCCEEEEEcCCCEEEEEecCCCC
Confidence                   99999999999999999998644

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4e-35  Score=253.23  Aligned_cols=284  Identities=11%  Similarity=0.081  Sum_probs=194.8

Q ss_pred             CceEEEEeccCC----------eeEeEEEeCCceEEEEEcC-------------------CCCCEEEEEeCCCcEEEEec
Q psy988            2 DKTVRLWHISRK----------ECLCCFQHIDFVTAICFHP-------------------RDDRYFLSGSLDGKLRLWNI   52 (408)
Q Consensus         2 Dg~i~vwd~~~~----------~~~~~~~h~~~v~~~~~sp-------------------~~~~~l~t~~~dg~i~iw~~   52 (408)
                      |+.|.+|+....          ..+..+.|...+..+.|++                   .++.+|++++.|++|+|||.
T Consensus        39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~  118 (393)
T 4gq1_A           39 DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIIT  118 (393)
T ss_dssp             SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEEC
Confidence            678888876321          1223334556666666543                   15568999999999999999


Q ss_pred             CCCCcee---eeeecCCceeeEEEEEec--------CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeE
Q psy988           53 PDKKVAV---WNEVEGQTKLITAANFCE--------NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKIS  121 (408)
Q Consensus        53 ~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~  121 (408)
                      .+++...   ...+.+|.+.|.+++|+|        ++++|++++.|++|+|||+.+........        .|...+.
T Consensus       119 ~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--------~~~~~v~  190 (393)
T 4gq1_A          119 KNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--------PLSSPGI  190 (393)
T ss_dssp             ETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--------ECSSCEE
T ss_pred             CCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--------CCCCCcE
Confidence            9886542   235789999999999998        88999999999999999998776543332        3456899


Q ss_pred             EEeeCCCCC-eEEEeeCCCeEEEEEccCcccceeecCc-----------------------cccccceEEEEe-cCCCEE
Q psy988          122 GIEPMPGED-KILVTSNDSRIRLYDLRDLNLSCKYKGY-----------------------VNVSSQIKASFS-HDGKYI  176 (408)
Q Consensus       122 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~l  176 (408)
                      +++|+|++. +|++++.|+.|++||+++++.......+                       .+...+.++.|. ++++.|
T Consensus       191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l  270 (393)
T 4gq1_A          191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI  270 (393)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred             EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence            999999875 7899999999999999887644322111                       122335567776 799999


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ++++.|+.+++||+..+.            ....+..+...+..+.+.|+.+...                .....+..+
T Consensus       271 ~s~s~d~~i~vwd~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  322 (393)
T 4gq1_A          271 LAMCKSGAWLRWNLFANN------------DYNEISDSTMKLGPKNLLPNVQGIS----------------LFPSLLGAC  322 (393)
T ss_dssp             EEECTTSEEEEEEC-------------------------------CCSCSEEEEC----------------SSCCSSCCE
T ss_pred             EEEeCCCCEEEEECccCC------------CCceEeeecCccccEEEcccccccc----------------ccCcceeEE
Confidence            999999999999997542            2234556667777777877766542                112222222


Q ss_pred             ccCC-CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          257 EPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       257 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      .+.+ ++.++++|+.||+|++||+.+++....+..+..  .|.+++|+|||++||+++.+| +.+|.+.
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            2333 445667789999999999999988888777655  899999999999999998766 6666554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3e-35  Score=254.06  Aligned_cols=266  Identities=13%  Similarity=0.037  Sum_probs=179.1

Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC--------CCCeEEEeeCCCeEEEE
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP--------GEDKILVTSNDSRIRLY  144 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~  144 (408)
                      ..+.+++.+|++++.|++|++||.++.+.......   ....+|.+.|.+++|+|        ++++|++++.|++|++|
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            34445677899999999999999998766544333   33456788999999997        78899999999999999


Q ss_pred             EccCcccceeecCccccccceEEEEecCCC-EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGK-YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      |++++.....+..+..  .+.+++|+|++. +|++++.||.|++||++++.......        .....+...+.....
T Consensus       172 d~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~--------~~~~~~~~~~~s~~~  241 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSS--PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS--------QTELVKNPWLLTLNT  241 (393)
T ss_dssp             EEETTEEEEEEEECSS--CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------------------CSCCCSEEEES
T ss_pred             ECCCCceeeeecCCCC--CcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc--------ccCCcccceEEeccc
Confidence            9998877766666554  478999999874 79999999999999998754332111        001111111222222


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccC-CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccce--------
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM-PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV--------  294 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------  294 (408)
                      .+...              ......+...+.++.|+ |+++.|++++.|+++++||+..++....+..+...        
T Consensus       242 ~~~~~--------------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          242 LPLVN--------------TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             GGGC--------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred             cccee--------------eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence            21111              11123566778888875 89999999999999999999887765555433221        


Q ss_pred             --------eceeEEEEcC--CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhh
Q psy988          295 --------SSQIKASFSH--DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  364 (408)
Q Consensus       295 --------~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  364 (408)
                              .......|+|  ++.++++|+.||.|++||+.++            .....+.+|..+|.+++|+|      
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~------------~~~~~~~~~~~~V~svafsp------  369 (393)
T 4gq1_A          308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK------------DSNSIPIQLGMPIVDFCWHQ------  369 (393)
T ss_dssp             SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT------------TCCEEEEECSSCEEEEEECT------
T ss_pred             ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC------------cEEEEecCCCCcEEEEEEcC------
Confidence                    1112234444  4457788999999999999887            45566778999999999999      


Q ss_pred             hccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          365 AQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       365 ~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                ||++||+++.|| +.+|++.
T Consensus       370 ----------dG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          370 ----------DGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ----------TSSEEEEEESSE-EEEEEEG
T ss_pred             ----------CCCEEEEEeCCC-eEEEEEe
Confidence                      999999998766 6666553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=251.78  Aligned_cols=282  Identities=11%  Similarity=0.045  Sum_probs=198.4

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEe
Q psy988           29 CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        29 ~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  108 (408)
                      .+.+ ++.+|++|+.||.|++||+.+++..  ..+.  ...|.++.|+|+   +++++.|++|++|+.............
T Consensus        43 ~~~~-d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYY-DKWVCMCRCEDGALHFTQLKDSKTI--TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSE-EEEEEEEEEETTEEEEEEESSSSCE--EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcC-CCCEEEEECCCCcEEEEECCCCcEE--EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            3445 7889999999999999999998866  3343  567888889888   999999999999987743211110000


Q ss_pred             e-c-cccccCCCCeEEEeeCC--CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCce
Q psy988          109 S-T-RGKNATGRKISGIEPMP--GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       109 ~-~-~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                      . . .....|...|.+++|+|  +++++++++.||.|++||+++++.......+.. ..+.+++|+|++.+|++|+.||.
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSC
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCE
Confidence            0 0 00123456899999999  999999999999999999999887655544322 34789999999999999999999


Q ss_pred             EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe
Q psy988          185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK  264 (408)
Q Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (408)
                      |++||++++...           ...+..                                  .|...|.+++|+|++.+
T Consensus       194 i~iwd~~~~~~~-----------~~~~~~----------------------------------~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          194 LDVYNLSSPDQA-----------SSRFPV----------------------------------DEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             EEEEESSCTTSC-----------CEECCC----------------------------------CTTSCEEEEEECTTSSE
T ss_pred             EEEEECCCCCCC-----------ccEEec----------------------------------cCCCCEEEEEEeCCCCE
Confidence            999999754211           012222                                  13445555555666677


Q ss_pred             EEEecCCCeEEEEEcCCCeeeeEEee---ccceeceeEEEEcCCCCEEEEecC-CceEEEeeccccCccccccccCcccc
Q psy988          265 ILVTSNDSRIRLYDLRDLNLSCKYKG---YVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       265 l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      |++++ ++.|++||+++++....+..   +.......+++|+|+|++|++++. |+.|++|++......           
T Consensus       229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~-----------  296 (343)
T 3lrv_A          229 MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN-----------  296 (343)
T ss_dssp             EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS-----------
T ss_pred             EEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc-----------
Confidence            78888 55999999998876554443   111111146999999999999888 999999999764211           


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                         +..  .++..++|.|...             +.+.|++++.||.++++-..
T Consensus       297 ---~~~--~~~~~~~~~~~~~-------------~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          297 ---WTK--DEESALCLQSDTA-------------DFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             ---EEE--EEEEECCC----C-------------CCCEEEEEEETTEEEEEEEC
T ss_pred             ---eEe--cCceeEecCcccc-------------ccceeEEEecCCceEEEEec
Confidence               111  5577788876211             56788888889988887543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-33  Score=244.95  Aligned_cols=274  Identities=14%  Similarity=0.165  Sum_probs=211.6

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE-EEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      +.++++++.|+.|++||+.+++..  ..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.......      
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~--~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------   72 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVT--ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------   72 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEE--EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEE--EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC------
Confidence            346888999999999999988766  4566664 48999999999987 5677899999999998876554431      


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEE-EEeecCceEEEeeec
Q psy988          114 NATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGSENQCIYIWKTH  191 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~  191 (408)
                         ...+.+++|+|++++|++++ .++.|++||+.+++....+..+.   .+.+++|+|+++++ ++++.++.|++||+.
T Consensus        73 ---~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           73 ---GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             ---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence               23899999999999886655 57999999999988877766543   36789999999987 677789999999987


Q ss_pred             cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE-EEecC
Q psy988          192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI-LVTSN  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~  270 (408)
                      ++....            .+..+                                    ..+..++|+|+++++ ++++.
T Consensus       147 ~~~~~~------------~~~~~------------------------------------~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          147 TKAVIN------------TVSVG------------------------------------RSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             TTEEEE------------EEECC------------------------------------SSEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEE------------EEecC------------------------------------CCcceEEECCCCCEEEEEeCC
Confidence            543221            11111                                    123455556666655 56788


Q ss_pred             CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec---CCceEEEeeccccCccccccccCccccceeeeee
Q psy988          271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS---ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  347 (408)
Q Consensus       271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h  347 (408)
                      ++.|++||+++++....+..+   ..+.+++|+|++++|++++   .++.|++||+.++            +.+..+..|
T Consensus       179 ~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~  243 (391)
T 1l0q_A          179 SMSISVIDTVTNSVIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------KITARIPVG  243 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------------EEEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC------------eEEEEEecC
Confidence            999999999999887776643   2567899999999999887   6899999999876            445556555


Q ss_pred             ccceEEEEecCCchhhhhccCCCCCCCcccEE-EEEecCCeEEEEeCCCCCCccccc
Q psy988          348 NAVVTCAVFAPCPELIIAQMEPDKSESTGYVL-VSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       348 ~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      . .+.+++|+|                ++++| ++++.|+.|++||+.+++....++
T Consensus       244 ~-~~~~~~~s~----------------dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          244 P-DPAGIAVTP----------------DGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             S-SEEEEEECT----------------TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             C-CccEEEEcc----------------CCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            4 478999999                88766 677889999999999877655543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=247.99  Aligned_cols=276  Identities=13%  Similarity=0.173  Sum_probs=208.1

Q ss_pred             CCceEEEEeccC-CeeE-eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEE--
Q psy988            1 MDKTVRLWHISR-KECL-CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANF--   75 (408)
Q Consensus         1 ~Dg~i~vwd~~~-~~~~-~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~--   75 (408)
                      .||.|+|||+.+ ++.+ ..+. |.+.|++++|+| ++++|++++.||.|++||+.+++..   .+..|...|.+++|  
T Consensus        62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~~~  137 (368)
T 3mmy_A           62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAI---QIAQHDAPVKTIHWIK  137 (368)
T ss_dssp             TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE---EEEECSSCEEEEEEEE
T ss_pred             CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCce---eeccccCceEEEEEEe
Confidence            389999999997 5554 4454 999999999999 9999999999999999999988765   46679999999999  


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      +|++++|++++.||.|++||+++.+........         ..+.++.+.  ...+++++.++.+++|+++........
T Consensus       138 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~  206 (368)
T 3mmy_A          138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP---------ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRR  206 (368)
T ss_dssp             CSSCEEEEEEETTSEEEEECSSCSSCSEEEECS---------SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEccCCCcEEEEECCCCcEEEEEecC---------CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhh
Confidence            899999999999999999999988765554321         256666665  458888999999999999876544333


Q ss_pred             cCccccccceEEEEecCCCE----EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          156 KGYVNVSSQIKASFSHDGKY----IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      ...........+.+.++...    +++++.||.|++||++.....         .....+..|.....            
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---------~~~~~~~~~~~~~~------------  265 (368)
T 3mmy_A          207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA---------KDNFTFKCHRSNGT------------  265 (368)
T ss_dssp             CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH---------HHSEEEECSEEC--------------
T ss_pred             ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc---------ccceeeeeeecccc------------
Confidence            32222233445666655544    999999999999999753210         11112222221100            


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                                 ......+...|.+++|+|++++|++++.||.|++||+++++++..+..|..  .+.+++|+|+|++|++
T Consensus       266 -----------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          266 -----------NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ--PISACCFNHNGNIFAY  332 (368)
T ss_dssp             -------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--CEEEEEECTTSSCEEE
T ss_pred             -----------cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC--CceEEEECCCCCeEEE
Confidence                       000112334677888888888999999999999999999999988887655  8999999999999999


Q ss_pred             ecCCceEEEeeccc
Q psy988          312 GSENQCIYIWKTHH  325 (408)
Q Consensus       312 ~~~dg~i~iw~~~~  325 (408)
                      ++.|+..+.|++..
T Consensus       333 ~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          333 ASSYDWSKGHEFYN  346 (368)
T ss_dssp             EECCCSTTCGGGCC
T ss_pred             EecccccccccccC
Confidence            99998766666543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.3e-34  Score=244.49  Aligned_cols=279  Identities=14%  Similarity=0.147  Sum_probs=197.0

Q ss_pred             CCceEEEEeccCC----eeEeEEE-eCCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCc-------eeeeeecCCc
Q psy988            1 MDKTVRLWHISRK----ECLCCFQ-HIDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKV-------AVWNEVEGQT   67 (408)
Q Consensus         1 ~Dg~i~vwd~~~~----~~~~~~~-h~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~-------~~~~~~~~~~   67 (408)
                      .||.|+|||+.++    +....+. |...|++++|+|. ++++|++|+.||.|++||+.++..       .....+..|.
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
T 3f3f_A           31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK  110 (351)
T ss_dssp             TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred             CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence            3899999999876    4555555 9999999999994 389999999999999999988642       2346788999


Q ss_pred             eeeEEEEEecC--CCEEEEEecCCEEEEEeccCCeeeEEEEEe-----eccccccCCCCeEEEeeCCC---CCeEEEeeC
Q psy988           68 KLITAANFCEN--GKFAVVGSYDGRCIFYTTDQLKYHTQIHVR-----STRGKNATGRKISGIEPMPG---EDKILVTSN  137 (408)
Q Consensus        68 ~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~  137 (408)
                      ..|.+++|+|+  +++|++++.||.|++||+++.+........     .......+...+.+++|+|+   +..+++++.
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  190 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL  190 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence            99999999999  999999999999999999876643322211     11112356678999999997   899999999


Q ss_pred             CCeEEEEEccCccc--ceeecCccccccceEEEEecCC----CEEEEeecCceEEEeeeccceeeeeecccCCCcccccc
Q psy988          138 DSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDG----KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  211 (408)
Q Consensus       138 dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (408)
                      ++.+.+|+...++.  ...+..|.  ..+.+++|+|++    ++|++++.||.|++||++.+.....            .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------~  256 (351)
T 3f3f_A          191 EQAIIYQRGKDGKLHVAAKLPGHK--SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA------------S  256 (351)
T ss_dssp             TEEEEEEECTTSCEEEEEECCCCC--SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------
T ss_pred             CCcEEEEccCCCceeeeeecCCCC--cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc------------c
Confidence            99998888877765  44445544  458899999998    8999999999999999975422111            0


Q ss_pred             ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988          212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  291 (408)
Q Consensus       212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  291 (408)
                      .............+.....                               ......+.....+.+|+....+.+..+.+|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          257 EESLTNSNMFDNSADVDMD-------------------------------AQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             -----------------------------------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCcccceeccCCCcccccc-------------------------------cccccccccceeeeecccccccEEEEEecc
Confidence            1111111111111111111                               011122344556677777777777778776


Q ss_pred             cceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          292 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ..  .|.+++|+|++++|++|+.||.|++|++.++
T Consensus       306 ~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          306 NG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             SS--CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence            55  7999999999999999999999999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=249.05  Aligned_cols=288  Identities=11%  Similarity=0.134  Sum_probs=202.5

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      |++|+  |.+.++.+  -+|...|.+++|+| +|       .++.+.+|+.+....   ..+ .|...|.+++|+|+|++
T Consensus        36 D~TV~--d~~~~~~l--~gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~~~---~~~-~~~~~V~~vawSPdG~~   99 (588)
T 2j04_A           36 DISIG--QPKYAKDI--NCNSKNLFHVKEFP-LE-------FENKLDFELAQQNGL---LNS-QPVCYPRVCKPSPIDDW   99 (588)
T ss_dssp             SEEEE--EECCCSCC--SSBGGGTEEEEEEC-CC-------CCCTTTTSCCCSSCS---STT-SCSCCEEEEEECSSSSC
T ss_pred             Cceee--ccccccee--cCCCccEEEEEECC-CC-------CcceEEEEeCCCceE---eec-CCCCcEEEEEECCCCCE
Confidence            78888  76666655  25999999999999 77       466666665433322   222 45788999999999999


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeecccccc--CCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-------c
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA--TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-------S  152 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~  152 (408)
                      ||+++.||.|++||.++  .     ..... +..  ....+.+++|+|+|++|++|+.||+|++||+.++..       +
T Consensus       100 LAs~s~dg~V~iwd~~~--~-----l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l  171 (588)
T 2j04_A          100 MAVLSNNGNVSVFKDNK--M-----LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE  171 (588)
T ss_dssp             EEEEETTSCEEEEETTE--E-----EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred             EEEEeCCCcEEEEeCCc--e-----eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence            99999999999999654  1     11111 111  123699999999999999999999999999998753       3


Q ss_pred             eee----cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccc-ccccceEEEEEEeCCc
Q psy988          153 CKY----KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFAPCP  227 (408)
Q Consensus       153 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~  227 (408)
                      ..+    .+|  ...|.+++|+|+|  +++++.|+.|++||+..+...         ...+.+ ..|...|         
T Consensus       172 ~ti~~~~~gh--~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---------~~~~tL~~~h~~~V---------  229 (588)
T 2j04_A          172 SSIRLSDAGS--KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---------PVSRMIQNASRRKI---------  229 (588)
T ss_dssp             EEEECSCTTC--CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---------CCEEEEECCCSSCC---------
T ss_pred             eeeecccccc--cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---------cceeeecccccCcE---------
Confidence            444    333  3569999999999  888899999999998653210         001122 1344444         


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE--cCC
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--SHD  305 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--s~~  305 (408)
                                                .+++|+  ++.|++++ +++|++||+.+++......+|..  .+..++|  +||
T Consensus       230 --------------------------~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~--~V~~va~~~s~d  278 (588)
T 2j04_A          230 --------------------------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE--NFHIIPLNHEKE  278 (588)
T ss_dssp             --------------------------CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS--CCCEEEETTCSS
T ss_pred             --------------------------EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc--eEEEEEeeeCCC
Confidence                                      444554  35567776 69999999998877444435544  7889999  999


Q ss_pred             CCEEEEecCCceEEEeeccccC-----ccccccc------cCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCC
Q psy988          306 GKYIVSGSENQCIYIWKTHHDY-----AKFSSVR------RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSES  374 (408)
Q Consensus       306 ~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~  374 (408)
                      +..|+++++||+ ++|..+.-.     .......      ......+..+.+ ...|.+++|+|                
T Consensus       279 ~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP----------------  340 (588)
T 2j04_A          279 STILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP----------------  340 (588)
T ss_dssp             CEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT----------------
T ss_pred             CCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC----------------
Confidence            999999999999 999975211     0000000      001112333443 66799999999                


Q ss_pred             cccEEEEEec
Q psy988          375 TGYVLVSADF  384 (408)
Q Consensus       375 ~~~~l~s~~~  384 (408)
                      ||+.+|+++.
T Consensus       341 dG~~lA~~~~  350 (588)
T 2j04_A          341 DGYSIAIVYD  350 (588)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            8889988874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.7e-33  Score=227.07  Aligned_cols=272  Identities=12%  Similarity=0.026  Sum_probs=185.3

Q ss_pred             CceEEEEeccCC---eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcE-EEEec--CCC--CceeeeeecCCceeeEE
Q psy988            2 DKTVRLWHISRK---ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKL-RLWNI--PDK--KVAVWNEVEGQTKLITA   72 (408)
Q Consensus         2 Dg~i~vwd~~~~---~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i-~iw~~--~~~--~~~~~~~~~~~~~~v~~   72 (408)
                      +..|++|+..++   +.++++. |+.+|..+.+.|+.-+++..+-.+=++ .++-+  ...  .........+|...|..
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~  141 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG  141 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence            468999999998   8888888 888999999999433433333222111 11111  111  11111222345545544


Q ss_pred             EEEecCCCEEEEEe--cCCEEEEEeccC-CeeeEEEEEeeccccccCCCCeEEEeeCC---CCCeEEEeeCCCeEEEEEc
Q psy988           73 ANFCENGKFAVVGS--YDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDL  146 (408)
Q Consensus        73 ~~~~~~~~~l~~~~--~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~  146 (408)
                      +   ++++++.++.  .|+.|++|++.. ++......        .|...+..++|+|   ++..|++++.|++|++||+
T Consensus       142 l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl  210 (356)
T 2w18_A          142 L---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL  210 (356)
T ss_dssp             E---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred             c---CCCcEEEecccCCCCcEEEEEECCCCceeeeec--------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence            3   5566555533  588999999844 44433322        3445788888888   7799999999999999999


Q ss_pred             cCcccceeecCccc-cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          147 RDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       147 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      ++++++.++.++.. ...+.+++|+|+|+++++++.+..  +|+                                    
T Consensus       211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~------------------------------------  252 (356)
T 2w18_A          211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES------------------------------------  252 (356)
T ss_dssp             TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------------------------------
T ss_pred             CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce------------------------------------
Confidence            99999999875432 345667899999999988876433  354                                    


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe-----eccceeceeEE
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-----GYVNVSSQIKA  300 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~v~~~  300 (408)
                                                             +++|+.|++|++||..+++.+..+.     +|..  ...+.
T Consensus       253 ---------------------------------------laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~--~~lsg  291 (356)
T 2w18_A          253 ---------------------------------------ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG--RFLEG  291 (356)
T ss_dssp             --------------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCC--CEEEE
T ss_pred             ---------------------------------------eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc--eeEcc
Confidence                                                   4678999999999999998876652     3322  23333


Q ss_pred             EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE-EEEecCCchhhhhccCCCCCCCcccEE
Q psy988          301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT-CAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      .+  ++.++|+|+.|++|+|||+.++            +++.++.+|...+. +++|+|                ||++|
T Consensus       292 ~~--sg~~lASgS~DgTIkIWDl~tG------------k~l~tL~gH~~~vvs~vafSP----------------DG~~L  341 (356)
T 2w18_A          292 DV--KDHCAAAILTSGTIAIWDLLLG------------QCTALLPPVSDQHWSFVKWSG----------------TDSHL  341 (356)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTTC------------SEEEEECCC--CCCCEEEECS----------------SSSEE
T ss_pred             cc--CCCEEEEEcCCCcEEEEECCCC------------cEEEEecCCCCCeEEEEEECC----------------CCCEE
Confidence            33  4889999999999999999987            67888888987655 689999                99999


Q ss_pred             EEEecCCeEEEEeC
Q psy988          380 VSADFNGVIRVFLN  393 (408)
Q Consensus       380 ~s~~~dg~v~iw~~  393 (408)
                      ++|+.|++|||||+
T Consensus       342 aSGS~D~TIklWd~  355 (356)
T 2w18_A          342 LAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEEECCCcEEEecC
Confidence            99999999999995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=2.7e-32  Score=243.54  Aligned_cols=331  Identities=10%  Similarity=0.114  Sum_probs=236.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEec--CCCCceeeeeecCCceeeEEEEEec--
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI--PDKKVAVWNEVEGQTKLITAANFCE--   77 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~--   77 (408)
                      |++|.+||..+++++..+.....+..++|+| ++++|++++.|++|.+||+  .+++..  ..+.. ...+..++|+|  
T Consensus       158 d~~V~v~D~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~--~~i~~-g~~p~~va~sp~~  233 (543)
T 1nir_A          158 AGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV--AEIKI-GIEARSVESSKFK  233 (543)
T ss_dssp             GTEEEEEETTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE--EEEEC-CSEEEEEEECCST
T ss_pred             CCeEEEEECCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEE--EEEec-CCCcceEEeCCCc
Confidence            7899999999999999998333499999999 9999999999999999999  666554  45553 45679999999  


Q ss_pred             --CCCEEEEEec-CCEEEEEeccCCeeeEEEEEeecccc--c-cCCCCeEEEeeCCCCCeEEE-eeCCCeEEEEEccCcc
Q psy988           78 --NGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGK--N-ATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLN  150 (408)
Q Consensus        78 --~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~  150 (408)
                        +|+++++++. +++|.+||..+.+....+........  . .....+..+.++|++..+++ ...++.|.+||..+.+
T Consensus       234 ~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          234 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence              9999999885 89999999999887666543221100  0 11237889999998776655 4668999999998876


Q ss_pred             cce--eecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          151 LSC--KYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       151 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                      .+.  .+.   ....+..+.|+|+|++|++++ .+++|.+||..++........        ....|......+ ++|++
T Consensus       314 ~l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~--------g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          314 NLTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV--------GKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             SCEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC--------SSSBCCTTCEEE-EETTT
T ss_pred             cceeEEec---cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc--------CCCCCCCCCccc-CCCCC
Confidence            544  222   123356789999999877655 588999999987543221100        000121111111 23331


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCC-------CeeeeEEeeccceeceeE
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRD-------LNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~v~~  299 (408)
                                                        +..++++. .|++|.+||+.+       +++++++..+..  .+..
T Consensus       382 ----------------------------------g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~  425 (543)
T 1nir_A          382 ----------------------------------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLF  425 (543)
T ss_dssp             ----------------------------------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCC
T ss_pred             ----------------------------------ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceE
Confidence                                              33456664 689999999998       888999988654  5567


Q ss_pred             EEEcCCCCEEEEec-------CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCC
Q psy988          300 ASFSHDGKYIVSGS-------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  372 (408)
Q Consensus       300 ~~~s~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  372 (408)
                      ++++|+|++|++++       .+++|.+||+.+....+..+.-   .....+..+...+..++|+|              
T Consensus       426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~--------------  488 (543)
T 1nir_A          426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI---AEWADLGEGAKRVVQPEYNK--------------  488 (543)
T ss_dssp             EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH---HHHHCCCSSCCEEEEEEECS--------------
T ss_pred             EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec---hhhcccCCCCCceEeccCCC--------------
Confidence            89999999999987       2679999999987422110000   00001235677899999999              


Q ss_pred             CCcccEEEEEe-----cCCeEEEEeCCCCCCccccc
Q psy988          373 ESTGYVLVSAD-----FNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       373 s~~~~~l~s~~-----~dg~v~iw~~~~~~~~~~~~  403 (408)
                        +|+.|..+.     .|+.|.|||.++++....++
T Consensus       489 --~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          489 --RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             --SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             --CCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence              888877652     47999999999999877776

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-33  Score=246.20  Aligned_cols=270  Identities=10%  Similarity=0.052  Sum_probs=193.3

Q ss_pred             ceEEEEEcCCCCCEE-EEEeCCCcEEEEecC--CCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           24 FVTAICFHPRDDRYF-LSGSLDGKLRLWNIP--DKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      .|++++|+| ++++| ++++.||.|++||+.  +++.........|...|.+++|+|++++|++++.+|.+++|++.+..
T Consensus       104 ~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            699999999 88886 899999999999998  77665322223667889999999999999999999999999998765


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeCCCeEEEEEccCccccee-ecCccccccceEEEEecCCCEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      ....    .......|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. +.+|.  ..+.+++|+ ++++|
T Consensus       183 ~~~~----~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          183 EEKF----TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--HFVSSICCG-KDYLL  255 (450)
T ss_dssp             CSSC----CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--SCEEEEEEC-STTEE
T ss_pred             cccc----cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--CceEEEEEC-CCCEE
Confidence            4210    11122346679999999999   88999999999999999999887766 44554  448899999 99999


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ++++.|+.|++||++++..............+. ...+..+   ..|.+                  .........+.++
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~------------------~~~~~~~~~v~~i  313 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYL-NDQHLAP---PRFQN------------------ENNDIIEFAVSKI  313 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGC-CTTSBC-------------------------------CBCCCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhh-hhccccc---ccccc------------------cccccceEEEEEE
Confidence            999999999999998754322111000000000 0000000   00000                  0001234567888


Q ss_pred             ccCCCCCeEEEec-CCCeEEEEEc--CCC---eeeeEEeeccceeceeEEEEcCCCCEEEEecC------CceEEEeecc
Q psy988          257 EPMPGEDKILVTS-NDSRIRLYDL--RDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE------NQCIYIWKTH  324 (408)
Q Consensus       257 ~~~~~~~~l~~~~-~d~~i~i~d~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~  324 (408)
                      +++|++++|++++ .++.|++|++  .++   +.+..+..+   ..+.+++|+|++.++++++.      +..|.+|.+.
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            9999999999988 8999999999  555   566666654   47889999996555555443      4568999876


Q ss_pred             cc
Q psy988          325 HD  326 (408)
Q Consensus       325 ~~  326 (408)
                      ..
T Consensus       391 ~~  392 (450)
T 2vdu_B          391 LN  392 (450)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=239.71  Aligned_cols=260  Identities=10%  Similarity=0.072  Sum_probs=195.7

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC---------CCCceeeeeecCCceeeEE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP---------DKKVAVWNEVEGQTKLITA   72 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~---------~~~~~~~~~~~~~~~~v~~   72 (408)
                      ||+|++||+.+++.+..+. ...|.++.|+| +   +++++.|++|++|+..         +++... ....+|...|.+
T Consensus        57 Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~  130 (343)
T 3lrv_A           57 DGALHFTQLKDSKTITTIT-TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLR-EIEVDSANEIIY  130 (343)
T ss_dssp             TTEEEEEEESSSSCEEEEE-EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEE-EEECCCSSCEEE
T ss_pred             CCcEEEEECCCCcEEEEEe-cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeE-EeecCCCCCEEE
Confidence            8999999999999988887 56788999999 5   9999999999999765         333221 223367788999


Q ss_pred             EEEec--CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           73 ANFCE--NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        73 ~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      ++|+|  +++++++++.||.|++||+++++......       ..+...+.+++|+|++.+|++|+.||.|++||+++++
T Consensus       131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             EECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            99999  99999999999999999999877632211       1234579999999999999999999999999999998


Q ss_pred             cc-eeecC-ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          151 LS-CKYKG-YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       151 ~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                      .. ..+.. |.  ..+.+++|+|++.+|++++ ++.|++||+++......         +..+..+...+.         
T Consensus       204 ~~~~~~~~~h~--~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~---------~~~~~~~~~~~~---------  262 (343)
T 3lrv_A          204 QASSRFPVDEE--AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA---------YPTYTIPEFKTG---------  262 (343)
T ss_dssp             SCCEECCCCTT--SCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS---------SCCCBC-----C---------
T ss_pred             CCccEEeccCC--CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee---------eccccccccccc---------
Confidence            77 66766 54  4588999999999999999 55999999976421100         011111111110         


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC---
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH---  304 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~---  304 (408)
                                            .  .+++|+|++++|++++. |+.+++|++.........      ..+..++|+|   
T Consensus       263 ----------------------~--~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~  312 (343)
T 3lrv_A          263 ----------------------T--VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTA  312 (343)
T ss_dssp             ----------------------C--EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----C
T ss_pred             ----------------------c--eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCcccc
Confidence                                  0  35777778888898887 999999999765433222      2566788998   


Q ss_pred             CCCEEEEecCCceEEEeeccc
Q psy988          305 DGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      +.+.+++++.||.+.++-...
T Consensus       313 ~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          313 DFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             CCCEEEEEEETTEEEEEEECS
T ss_pred             ccceeEEEecCCceEEEEecC
Confidence            899999999999999886443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-32  Score=233.79  Aligned_cols=249  Identities=12%  Similarity=0.115  Sum_probs=177.9

Q ss_pred             EEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC
Q psy988           49 LWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG  128 (408)
Q Consensus        49 iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  128 (408)
                      ||++.+.+..  .....|...|.+++|+|+|++|++|+.++ +++|++++.+.......          ..+..+.+.++
T Consensus         3 i~s~~~~~~~--~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~   69 (355)
T 3vu4_A            3 LGSMITRNPI--VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLHR   69 (355)
T ss_dssp             ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECTT
T ss_pred             cccccccCCc--cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcCC
Confidence            4555555443  46688999999999999999999988775 78999887654332211          14677788888


Q ss_pred             CCeE-EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcc
Q psy988          129 EDKI-LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  207 (408)
Q Consensus       129 ~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (408)
                      ++.+ ++++.|+.|++||+.+++.+..+..+   ..+.++.++++.  ++++ .++.|++||+.+..           ..
T Consensus        70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~-----------~~  132 (355)
T 3vu4_A           70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVS-YGDVISVFKFGNPW-----------KR  132 (355)
T ss_dssp             SSEEEEECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEE-ETTEEEEEESSTTC-----------CB
T ss_pred             CCEEEEEECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEE-EcCEEEEEECCCCc-----------ee
Confidence            8877 45677899999999999888877633   347788888764  4444 47899999997541           11


Q ss_pred             ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE--ecCCCeEEEEEcCCCe--
Q psy988          208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV--TSNDSRIRLYDLRDLN--  283 (408)
Q Consensus       208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~--  283 (408)
                      +..+..   +...+++++                                     .++++  |+.||.|++||+.+++  
T Consensus       133 ~~~~~~---~~~~~~~s~-------------------------------------~~la~~sg~~~g~v~iwd~~~~~~~  172 (355)
T 3vu4_A          133 ITDDIR---FGGVCEFSN-------------------------------------GLLVYSNEFNLGQIHITKLQSSGSA  172 (355)
T ss_dssp             SSCCEE---EEEEEEEET-------------------------------------TEEEEEESSCTTCEEEEECCC----
T ss_pred             eEEecc---CCceEEEEc-------------------------------------cEEEEeCCCcCcEEEEEECCCCCcc
Confidence            122222   222333333                                     23444  6899999999999865  


Q ss_pred             --------------eeeEEeeccceeceeEEEEcCCCCEEEEecCCce-EEEeeccccCccccccccCccccceeee-e-
Q psy988          284 --------------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC-IYIWKTHHDYAKFSSVRRDRNDFWEGIK-A-  346 (408)
Q Consensus       284 --------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~-  346 (408)
                                    ....+.+|..  .|.+++|+|+|++||+|+.|++ |++||+.++            +++..+. + 
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~h~~--~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~------------~~~~~~~~g~  238 (355)
T 3vu4_A          173 TTQDQGVQQKAILGKGVLIKAHTN--PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG------------VLVREFRRGL  238 (355)
T ss_dssp             --------------CCEEECCCSS--CEEEEEECTTSSEEEEEETTCSEEEEEETTTC------------CEEEEEECTT
T ss_pred             ccccccccccccCcccEEEEccCC--ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC------------cEEEEEEcCC
Confidence                          2566777655  8999999999999999999998 999999987            5667777 5 


Q ss_pred             eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          347 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       347 h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      |...|.+++|+|                ++++|++++.||+|++||+....
T Consensus       239 h~~~v~~~~~s~----------------~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          239 DRADVVDMKWST----------------DGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CCSCEEEEEECT----------------TSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCcEEEEEECC----------------CCCEEEEEECCCEEEEEEccCCC
Confidence            999999999999                99999999999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.8e-32  Score=238.70  Aligned_cols=273  Identities=9%  Similarity=0.080  Sum_probs=211.7

Q ss_pred             CceEEEEeccCCeeEeEE------EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEE
Q psy988            2 DKTVRLWHISRKECLCCF------QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~------~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~   75 (408)
                      |+.|++||+.+++.+...      .|.+.|.+++|+| ++.++++++.|+.|++||+++++..  ..+..|...+.+++|
T Consensus       143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~  219 (433)
T 3bws_A          143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK--ATVDLTGKWSKILLY  219 (433)
T ss_dssp             SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE--EEEECSSSSEEEEEE
T ss_pred             CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE--EEEcCCCCCeeEEEE
Confidence            678999999999888743      2888999999999 9999999999999999999988766  567788889999999


Q ss_pred             ecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--------CCCeEEEEEc
Q psy988           76 CENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--------NDSRIRLYDL  146 (408)
Q Consensus        76 ~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~  146 (408)
                      +|+++++++++ .++.|++||+++++......         ....+.+++|+|+++.+++++        .|+.|++||+
T Consensus       220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEEECC---------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             cCCCCEEEEEecCCCcEEEEECCCCcEEEEec---------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            99999885554 79999999999876533321         123589999999999999987        4889999999


Q ss_pred             cCcccceeecCccccccceEEEEecCCCEE-EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      ++++....+..   ...+..++|+|+++.+ ++++.++.|++||+.++....            .+ .+...+.+++|+|
T Consensus       291 ~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~------------~~-~~~~~~~~~~~s~  354 (433)
T 3bws_A          291 DKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK------------SI-PVFDKPNTIALSP  354 (433)
T ss_dssp             TTTEEEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE------------EE-ECSSSEEEEEECT
T ss_pred             CCCcEEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE------------Ee-cCCCCCCeEEEcC
Confidence            98877665432   2246789999999765 556889999999997643221            11 2345567788888


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                      +++.+++........                    ...++++++.||.|++||+.+++....+..+   ..+.+++|+|+
T Consensus       355 dg~~l~~~~~~~~~~--------------------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~d  411 (433)
T 3bws_A          355 DGKYLYVSCRGPNHP--------------------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---NQPTGLDVSPD  411 (433)
T ss_dssp             TSSEEEEEECCCCCT--------------------TTCTTSCCSSCCEEEEEETTTTEEEEEEECS---SSEEEEEECTT
T ss_pred             CCCEEEEEecCCCcc--------------------ccccccccccceEEEEEECCCCcEEEEecCC---CCCceEEEcCC
Confidence            877665443221110                    2234556677899999999999988887763   25789999999


Q ss_pred             CCEEEEecC-CceEEEeeccc
Q psy988          306 GKYIVSGSE-NQCIYIWKTHH  325 (408)
Q Consensus       306 ~~~l~~~~~-dg~i~iw~~~~  325 (408)
                      |++|++++. |+.|++|+++.
T Consensus       412 g~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          412 NRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SCEEEEEETTTTEEEEEEETT
T ss_pred             CCEEEEEECCCCeEEEEEecC
Confidence            999988764 99999999863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=6.1e-31  Score=254.20  Aligned_cols=352  Identities=11%  Similarity=0.068  Sum_probs=253.7

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCceeeeeecCCceee------
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAVWNEVEGQTKLI------   70 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~v------   70 (408)
                      +.|++|++.+++......|...+.+++||| ||++||+++.+      ..|++|++.+++.   ..+..|...+      
T Consensus        33 ~~l~~~~~~gg~~~~lt~~~~~v~~~~~SP-DG~~la~~s~~~~~~~~~~i~~~d~~~g~~---~~lt~~~~~~~~~~~~  108 (1045)
T 1k32_A           33 DDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEI---KRITYFSGKSTGRRMF  108 (1045)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEE---EECCCCCEEEETTEEC
T ss_pred             CcEEEEECCCCcEEEeeeCCCcccCeEECC-CCCEEEEEEeeccCCCCCeEEEEECCCCCe---EEcccCCCcccccccc
Confidence            579999999998887777999999999999 99999988654      3799999988763   4778888888      


Q ss_pred             -EEEEEecCCCEEEEEecC------CEEEEEeccCCeeeEEEEE------------------------------------
Q psy988           71 -TAANFCENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHV------------------------------------  107 (408)
Q Consensus        71 -~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~------------------------------------  107 (408)
                       ..++|+|||+.+++++.+      ..|.+|++.++........                                    
T Consensus       109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence             999999999977777644      4688888776543210000                                    


Q ss_pred             -e----eccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC-cccceeecCccccccceEEEEecCCCEEEEeec
Q psy988          108 -R----STRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       108 -~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                       .    .......|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+..+..   +...+|+|+|++|+.+ .
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~---~~~~~~SpDG~~la~~-~  263 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD---YYPRHLNTDGRRILFS-K  263 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS---SCEEEEEESSSCEEEE-E
T ss_pred             EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC---cceeeEcCCCCEEEEE-e
Confidence             0    00011345667888899887 5566677788899998763 333444444332   4457999999999887 5


Q ss_pred             CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe-CCcceeeeecCCC-----CCCCceeeecCCCc-eee
Q psy988          182 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-PCPELIIAQMEPD-----KSESTGYVLNATGR-KIS  254 (408)
Q Consensus       182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~i~  254 (408)
                      ++.|++||+......  ...............+...+.+++|+ |+|+.+++.....     ........+..+.. .+.
T Consensus       264 ~~~i~~~d~~~~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  341 (1045)
T 1k32_A          264 GGSIYIFNPDTEKIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV  341 (1045)
T ss_dssp             TTEEEEECTTTCCEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEE
T ss_pred             CCEEEEecCCceEee--eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEE
Confidence            889999998432111  11111111111122345568899999 9999988765220     01122223445555 899


Q ss_pred             eeccCCCCCeEEEecCCCeEE-EEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          255 GIEPMPGEDKILVTSNDSRIR-LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                      .++|+ ||+.|++++.++.+. +||+.+++... +..+  ...+..++|+|||++|++++.++.|++||+.++       
T Consensus       342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-------  410 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-------  410 (1045)
T ss_dssp             EECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-------
T ss_pred             eeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC--ccceeeeEECCCCCEEEEECCCCeEEEEECCCC-------
Confidence            99999 999999988888898 99998776543 3333  346789999999999999999999999999886       


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC----------eEEEEeCCCCC
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG----------VIRVFLNKTKP  397 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----------~v~iw~~~~~~  397 (408)
                           +......+|...+.+++|+|                ||++|++++.++          .|++||+.+++
T Consensus       411 -----~~~~~~~~~~~~v~~~~~Sp----------------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          411 -----KPTVIERSREAMITDFTISD----------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             -----CEEEEEECSSSCCCCEEECT----------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             -----ceEEeccCCCCCccceEECC----------------CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence                 34444557888999999999                899998887654          89999998765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=1.1e-31  Score=232.97  Aligned_cols=275  Identities=11%  Similarity=0.104  Sum_probs=203.1

Q ss_pred             eEEEEec--cCCeeEeE--EE-eCCceEEEEEcCC-------------CCCEEEEEeCC------CcEEEEecCCCCcee
Q psy988            4 TVRLWHI--SRKECLCC--FQ-HIDFVTAICFHPR-------------DDRYFLSGSLD------GKLRLWNIPDKKVAV   59 (408)
Q Consensus         4 ~i~vwd~--~~~~~~~~--~~-h~~~v~~~~~sp~-------------~~~~l~t~~~d------g~i~iw~~~~~~~~~   59 (408)
                      +|+|||+  .+++++..  +. |...+..+++++.             .+..++.++.+      +.|++||++++..  
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--  171 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--  171 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC--
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC--
Confidence            8999999  88887733  44 8888888887741             15667776654      7999999986543  


Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecCC---EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEE-Ee
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYDG---RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKIL-VT  135 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  135 (408)
                       ..+..|...+.+++|+|+|++|++++.++   .|++||+.+++... +  .      .+...+.+++|+|+++.|+ ++
T Consensus       172 -~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l--~------~~~~~~~~~~~spdg~~la~~~  241 (415)
T 2hqs_A          172 -FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V--A------SFPRHNGAPAFSPDGSKLAFAL  241 (415)
T ss_dssp             -EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E--E------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             -EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e--e------cCCCcccCEEEcCCCCEEEEEE
Confidence             46777889999999999999999999885   99999999876532 1  1      2345799999999999888 55


Q ss_pred             eCCC--eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc--eEEEeeeccceeeeeecccCCCccccc
Q psy988          136 SNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       136 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                      +.++  .|++||+++++. ..+..+.  ..+.+++|+|+|++|++++. ++  .|++||+.++..             ..
T Consensus       242 ~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-------------~~  305 (415)
T 2hqs_A          242 SKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------------QR  305 (415)
T ss_dssp             CTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------------EE
T ss_pred             ecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-------------EE
Confidence            5554  499999988765 3444443  34778999999999988876 45  677777754321             11


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---CCeEEEEEcCCCeeeeE
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLSCK  287 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~  287 (408)
                      +..+...+                                   ..++|+|+|++|++++.   +..|++||+.+++.. .
T Consensus       306 l~~~~~~~-----------------------------------~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~  349 (415)
T 2hqs_A          306 ITWEGSQN-----------------------------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V  349 (415)
T ss_dssp             CCCSSSEE-----------------------------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred             EecCCCcc-----------------------------------cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence            12222333                                   44555555666666554   368999999988763 3


Q ss_pred             EeeccceeceeEEEEcCCCCEEEEecCCc---eEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          288 YKGYVNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       288 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      +..+ .  .+.+++|+|||++|++++.++   .|++||+..             .....+..|.+.|.+++|+|
T Consensus       350 l~~~-~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-------------~~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          350 LSST-F--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-------------RFKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             CCCS-S--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-------------CCEEECCCSSSEEEEEEECC
T ss_pred             ecCC-C--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-------------CcEEEeeCCCCCCcCCcccc
Confidence            4333 2  678899999999999888776   799999875             35667888999999999999

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.9e-29  Score=225.24  Aligned_cols=294  Identities=12%  Similarity=0.082  Sum_probs=218.6

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEec--cCCeeeEEE
Q psy988           29 CFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTT--DQLKYHTQI  105 (408)
Q Consensus        29 ~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~  105 (408)
                      .|+| ++.++++++.|++|.+||..++++.  ..+. ++.  +..++|+|+|++|++++.|+.|.+||+  .+.+....+
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~--~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIV--KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTCCEE--EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCceEE--EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            4889 8899999999999999999998876  5565 443  889999999999999999999999999  676654433


Q ss_pred             EEeeccccccCCCCeEEEeeCC----CCCeEEEeeC-CCeEEEEEccCcccceeecCcc---------ccccceEEEEec
Q psy988          106 HVRSTRGKNATGRKISGIEPMP----GEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYV---------NVSSQIKASFSH  171 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~  171 (408)
                      .         +...+..++|+|    +++++++++. ++.|.+||..+++++..+....         ....+..+.++|
T Consensus       219 ~---------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          219 K---------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             E---------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             e---------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence            2         124678999999    9999999874 8999999999998887775432         112467889999


Q ss_pred             CCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          172 DGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       172 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      ++.. +++...++.|.+||..+....                    .+..+                          .+.
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l--------------------~~~~i--------------------------~~~  323 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNL--------------------TVTSI--------------------------GAA  323 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSC--------------------EEEEE--------------------------ECC
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcc--------------------eeEEe--------------------------ccC
Confidence            7765 556667899999998643110                    00000                          122


Q ss_pred             ceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeecc--ceeceeEEEEcCC-CCEEEEec-CCceEEEeeccc
Q psy988          251 RKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYV--NVSSQIKASFSHD-GKYIVSGS-ENQCIYIWKTHH  325 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~-~~~l~~~~-~dg~i~iw~~~~  325 (408)
                      ..+..+.|+|++++++++ ..+++|.+||+.++++...+....  +......+ ++|+ +..++++. .|++|.+||+.+
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            345567778888876654 568999999999999988887421  11122222 4677 66667765 689999999987


Q ss_pred             cCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-------cCCeEEEEeCCCCCC
Q psy988          326 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-------FNGVIRVFLNKTKPK  398 (408)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~v~iw~~~~~~~  398 (408)
                      ...     +...+++++++.+|.+.+..++|+|                ++++|++++       .+++|.+||+.+++.
T Consensus       403 ~~~-----~~~~~~~v~~l~~~g~~~~~v~~~p----------------dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          403 KNH-----PQYAWKKVAELQGQGGGSLFIKTHP----------------KSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             TTC-----TTTBTSEEEEEECSCSCCCCEECCT----------------TCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             CCC-----chhcCeEEEEEEcCCCCceEEEcCC----------------CCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            311     1122378888999988899999999                899999987       378999999999987


Q ss_pred             c-ccccc
Q psy988          399 H-SSLPV  404 (408)
Q Consensus       399 ~-~~~~~  404 (408)
                      . ..+++
T Consensus       462 ~~~~~~v  468 (543)
T 1nir_A          462 KYQVLPI  468 (543)
T ss_dssp             CCEEECH
T ss_pred             CeEEeec
Confidence            6 55543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.2e-29  Score=220.08  Aligned_cols=282  Identities=14%  Similarity=0.111  Sum_probs=201.7

Q ss_pred             CceEEEEEcCCCCCEEEEEe----CCC----cEEEEec--CCCCceeeeeecCCceeeEEEEEec--------------C
Q psy988           23 DFVTAICFHPRDDRYFLSGS----LDG----KLRLWNI--PDKKVAVWNEVEGQTKLITAANFCE--------------N   78 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~--------------~   78 (408)
                      ..+...+|.+.+.+++++|+    .||    +|+|||+  .+++.+....+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            46677788885556777886    467    8999999  8888665456888888888777765              1


Q ss_pred             CCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---eEEEEEccCc
Q psy988           79 GKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS---RIRLYDLRDL  149 (408)
Q Consensus        79 ~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  149 (408)
                      +..++.++.+      +.|++||++.... ..+.        .|...+.+++|+|+++.|++++.++   .|++||++++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l~--------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVVH--------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC-EEEE--------EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC-EEEe--------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence            5667766664      7999999986442 2221        2346899999999999999998875   9999999988


Q ss_pred             ccceeecCccccccceEEEEecCCCEEE-EeecCc--eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          150 NLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQ--CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      +... +..+.  ..+.+++|+|||++|+ +++.++  .|++||+.++..             ..+..+...+.+      
T Consensus       214 ~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-------------~~l~~~~~~~~~------  271 (415)
T 2hqs_A          214 AVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-------------RQVTDGRSNNTE------  271 (415)
T ss_dssp             CEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-------------EECCCCSSCEEE------
T ss_pred             cEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-------------EeCcCCCCcccc------
Confidence            7653 44333  3477899999999888 555555  499999865321             122233334444      


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CC--eEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  303 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s  303 (408)
                                                   ++|+|||++|++++. ++  .|++||+.+++.. .+..+.  ..+.+++|+
T Consensus       272 -----------------------------~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~s  319 (415)
T 2hqs_A          272 -----------------------------PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVS  319 (415)
T ss_dssp             -----------------------------EEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEEC
T ss_pred             -----------------------------eEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEEC
Confidence                                         455555555666554 44  6888899887643 333332  367789999


Q ss_pred             CCCCEEEEecCC---ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988          304 HDGKYIVSGSEN---QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV  380 (408)
Q Consensus       304 ~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  380 (408)
                      |||++|++++.+   ..|++||+.++.            . ..+..|. .+.+++|+|                +|++|+
T Consensus       320 pdG~~l~~~~~~~g~~~i~~~d~~~~~------------~-~~l~~~~-~~~~~~~sp----------------dg~~l~  369 (415)
T 2hqs_A          320 SDGKFMVMVSSNGGQQHIAKQDLATGG------------V-QVLSSTF-LDETPSLAP----------------NGTMVI  369 (415)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCC------------E-EECCCSS-SCEEEEECT----------------TSSEEE
T ss_pred             CCCCEEEEEECcCCceEEEEEECCCCC------------E-EEecCCC-CcCCeEEcC----------------CCCEEE
Confidence            999999988764   689999998752            2 3344454 789999999                999999


Q ss_pred             EEecCC---eEEEEeCCCCC
Q psy988          381 SADFNG---VIRVFLNKTKP  397 (408)
Q Consensus       381 s~~~dg---~v~iw~~~~~~  397 (408)
                      +++.|+   .|++||+..+.
T Consensus       370 ~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTEEEEEEEETTSCC
T ss_pred             EEEcCCCccEEEEEECCCCc
Confidence            888877   79999987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=2.3e-28  Score=229.03  Aligned_cols=320  Identities=10%  Similarity=0.002  Sum_probs=223.0

Q ss_pred             CCceEEEEEcCCCCCEEEEEeC-CC-----cEEEEecCCCCceeeeeecCCc----------------------eeeEEE
Q psy988           22 IDFVTAICFHPRDDRYFLSGSL-DG-----KLRLWNIPDKKVAVWNEVEGQT----------------------KLITAA   73 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~----------------------~~v~~~   73 (408)
                      ...|.+++||| ||++|++++. |+     .|++||+.+++.........+.                      ..+.++
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            45699999999 9999999998 88     8999999998765322222222                      348899


Q ss_pred             EEecCCCEEEEEecCCEEEEEeccCC---eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           74 NFCENGKFAVVGSYDGRCIFYTTDQL---KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        74 ~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      +|+|||++|++++. +.|.+||+.++   ...         ....+...+..++|+|||++|++++. +.|++||+.+++
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~  183 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR  183 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---------BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---------EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence            99999999999886 99999999876   321         11233467999999999999999875 689999999877


Q ss_pred             cceeecCcccc--------------ccceEEEEecCCCEEEEeecCc---------------------------------
Q psy988          151 LSCKYKGYVNV--------------SSQIKASFSHDGKYIVSGSENQ---------------------------------  183 (408)
Q Consensus       151 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~dg---------------------------------  183 (408)
                      ...........              ..+..+.|+|||++|++++.|+                                 
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            65443332210              0135689999999999987765                                 


Q ss_pred             eEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC------------CCCceeeecCCC
Q psy988          184 CIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK------------SESTGYVLNATG  250 (408)
Q Consensus       184 ~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~  250 (408)
                      .|++||+.+ +.....          .....+...+..++| |||+.+++......            ......+...+.
T Consensus       264 ~l~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  332 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWI----------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS  332 (741)
T ss_dssp             EEEEECSSTTCCCEEE----------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEEEEECCCCCceEEe----------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence            788888765 432111          001246778999999 99999986543111            111122222222


Q ss_pred             c----eeeeeccCCCCCeEEEecCCCeEEEEEcC-CCeeeeEEeeccceeceeEE-EEcCCCCEEEE-ecCCc--eEEEe
Q psy988          251 R----KISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVS-GSENQ--CIYIW  321 (408)
Q Consensus       251 ~----~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~-~~~dg--~i~iw  321 (408)
                      .    .+..++|+|||+++++++.++.++||.+. +++ ...+..+..  .+..+ .|+|+|+.|+. ++.++  .++||
T Consensus       333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred             CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence            1    34689999999999999999988888765 344 555554433  56666 59999997764 55555  89999


Q ss_pred             eccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC----CeEEEEeCCC
Q psy988          322 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN----GVIRVFLNKT  395 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iw~~~~  395 (408)
                      ++....           .....+.. ...+..++|+|                ||++|+....+    +.+.+|+...
T Consensus       410 ~~~~~g-----------~~~~~l~~-~~~~~~~~~sp----------------dg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          410 AVPLQG-----------GQPQRLSK-APGMHSASFAR----------------NASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             EEETTC-----------CCCEECCC-SCSEEEEEECT----------------TSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEcCC-----------CCeeeccc-CCCceEEEECC----------------CCCEEEEEecCCCCCCeEEEEEcCC
Confidence            987521           22333443 55678999999                78777765433    5688888754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.97  E-value=7.7e-29  Score=230.92  Aligned_cols=313  Identities=10%  Similarity=0.018  Sum_probs=209.1

Q ss_pred             CceEEEEeccCCee--EeEEEeC-----------------CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee
Q psy988            2 DKTVRLWHISRKEC--LCCFQHI-----------------DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE   62 (408)
Q Consensus         2 Dg~i~vwd~~~~~~--~~~~~h~-----------------~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~   62 (408)
                      |+ | +||+.+++.  ...+.|.                 ..|.+++||| + ..++.+. ++.|++||+.+++..   .
T Consensus        44 ~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~---~  115 (706)
T 2z3z_A           44 DD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVT---Y  115 (706)
T ss_dssp             TE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEE---E
T ss_pred             Cc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC-C-CeEEEEE-CCEEEEEECCCCceE---E
Confidence            45 8 999999988  5555544                 5699999999 7 5555553 599999999887654   4


Q ss_pred             ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC-----CeeeEEEEEeecc------ccccCCCCeEEEeeCCCCCe
Q psy988           63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ-----LKYHTQIHVRSTR------GKNATGRKISGIEPMPGEDK  131 (408)
Q Consensus        63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~  131 (408)
                      +..+...+.+++|+|||++|+++ .++.|++|++.+     ++...........      ....+...+.++.|+||+++
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            45566778899999999999985 789999999987     5532211100000      00001123588999999999


Q ss_pred             EEEee---------------------------------CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988          132 ILVTS---------------------------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       132 l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      |++++                                 .+..|++||+.+++.............+..++|+|||++|++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            99987                                 446799999998876544433223344778999999999999


Q ss_pred             eecCc-----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          179 GSENQ-----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       179 ~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      ++.++     .|++||+.++.....                      +.-....                    .....+
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~----------------------~~~~~~~--------------------~~~~~~  312 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRT----------------------LFVETDK--------------------HYVEPL  312 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEE----------------------EEEEECS--------------------SCCCCC
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeE----------------------EEEccCC--------------------CeECcc
Confidence            87765     899999875411100                      0000000                    000123


Q ss_pred             eeeccCC--CCCeEEEecCCCeEEEEEcC-CCeeeeEEeeccceeceeE-EEEcCCCCEEEEec-CCc----eEEEeecc
Q psy988          254 SGIEPMP--GEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIK-ASFSHDGKYIVSGS-ENQ----CIYIWKTH  324 (408)
Q Consensus       254 ~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~-~dg----~i~iw~~~  324 (408)
                      ..++|+|  ||++++++..++.+++|++. +++....+..+..  .+.. ++|+|+|+.|+.++ .++    .|+.|++.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            4577888  88888889999999999876 5666666655432  4555 79999999886554 444    56666665


Q ss_pred             ccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC----CeEEEEeCCCCC
Q psy988          325 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN----GVIRVFLNKTKP  397 (408)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~  397 (408)
                      ++.             ...+. |...+.+++|+|                ||++|+....+    +.|++||+.+++
T Consensus       391 ~~~-------------~~~l~-~~~~~~~~~~sp----------------dg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          391 GGK-------------TKDLT-PESGMHRTQLSP----------------DGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CCC-------------CEESC-CSSSEEEEEECT----------------TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCC-------------ceecc-CCCceEEEEECC----------------CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            541             22222 566789999999                88888766443    569999998765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.97  E-value=1.4e-28  Score=237.77  Aligned_cols=334  Identities=11%  Similarity=0.040  Sum_probs=241.7

Q ss_pred             ceEEEEeccCCeeEeEEEeCCce-------EEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCcee----------
Q psy988            3 KTVRLWHISRKECLCCFQHIDFV-------TAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAV----------   59 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v-------~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~----------   59 (408)
                      ..|++||+.+++......|...+       .+++|+| |++++++++.+      ..|.+|++.++....          
T Consensus        80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp-Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~  158 (1045)
T 1k32_A           80 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHIL  158 (1045)
T ss_dssp             EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEE
T ss_pred             CeEEEEECCCCCeEEcccCCCcccccccccccccCCC-CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceee
Confidence            47999999998866555688888       9999999 88877777754      357788876554221          


Q ss_pred             -------------------------------------eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe-e
Q psy988           60 -------------------------------------WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK-Y  101 (408)
Q Consensus        60 -------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~  101 (408)
                                                           ...+.+|...+.++.|+++ .++++++.++.+.+|.+.... .
T Consensus       159 ~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~  237 (1045)
T 1k32_A          159 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD  237 (1045)
T ss_dssp             EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS
T ss_pred             eCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc
Confidence                                                 0123456677888889887 666777788888888765321 1


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc---------ccccceEEEEe-c
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV---------NVSSQIKASFS-H  171 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~-~  171 (408)
                      ...+     .   .+ ..+...+|+|+++.++++. ++.|++||+.... +..+..+.         ....+..++|+ |
T Consensus       238 ~~~l-----~---~~-~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p  306 (1045)
T 1k32_A          238 LRKH-----T---SF-TDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL  306 (1045)
T ss_dssp             CEEC-----C---CC-CSSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred             ceEe-----c---CC-CCcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC
Confidence            1111     1   11 1356679999999998884 7899999995433 33433321         11246789999 9


Q ss_pred             CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc-eEEEEEEeCCcceeeeecCCCC-------CCCce
Q psy988          172 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA-VVTCAVFAPCPELIIAQMEPDK-------SESTG  243 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~-------~~~~~  243 (408)
                      +|++|++++ ++.+++|+...+..             ..+..+.. .+..++|+ +++.++.......       .....
T Consensus       307 dG~~la~~~-~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          307 DGDLIAFVS-RGQAFIQDVSGTYV-------------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBE-------------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CCCEEEEEE-cCEEEEEcCCCCce-------------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence            999999887 78999999865421             12344555 78899999 9988776433110       01111


Q ss_pred             eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC--------
Q psy988          244 YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN--------  315 (408)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------  315 (408)
                      ..+..+...+..++|+|||++|++++.++.|++||+.+++.......+..  .+..++|||||++|++++.+        
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~--~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC--CccceEECCCCCeEEEEecCccccccCC
Confidence            22235567889999999999999999999999999999988777766544  66789999999999987664        


Q ss_pred             --ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          316 --QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       316 --g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                        +.|++||+.++            + ...+..|...+.+++|+|                ||+.|+.++.++..++|+.
T Consensus       450 ~~~~i~l~d~~~g------------~-~~~l~~~~~~~~~~~~sp----------------dG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          450 VMQAIHVYDMEGR------------K-IFAATTENSHDYAPAFDA----------------DSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             CEEEEEEEETTTT------------E-EEECSCSSSBEEEEEECT----------------TSCEEEEEESCCCCCEECS
T ss_pred             CCCeEEEEECCCC------------c-EEEeeCCCcccCCceEcC----------------CCCEEEEEecccCCcCcch
Confidence              48999999875            2 455667888889999999                8999999998888888876


Q ss_pred             CC
Q psy988          394 KT  395 (408)
Q Consensus       394 ~~  395 (408)
                      ..
T Consensus       501 ~~  502 (1045)
T 1k32_A          501 VV  502 (1045)
T ss_dssp             SS
T ss_pred             hc
Confidence            53

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.97  E-value=1.2e-27  Score=203.32  Aligned_cols=275  Identities=15%  Similarity=0.217  Sum_probs=187.5

Q ss_pred             CceEEEEecc-CC--eeEeEEEeCCceEEEEEcCCCCCEEEEEeCC-CcEEEEecC--CCCceeeeeecCCceeeEEEEE
Q psy988            2 DKTVRLWHIS-RK--ECLCCFQHIDFVTAICFHPRDDRYFLSGSLD-GKLRLWNIP--DKKVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         2 Dg~i~vwd~~-~~--~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~   75 (408)
                      |+.|++||+. ++  +.+..+.|...+.+++|+| ++++|++++.+ +.|.+|++.  ++.......+..+. .+..++|
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   91 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST   91 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE
T ss_pred             CCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE
Confidence            7899999995 33  4455566889999999999 99988888886 999999998  56654444555444 7889999


Q ss_pred             ecCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccC-cccc
Q psy988           76 CENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRD-LNLS  152 (408)
Q Consensus        76 ~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~  152 (408)
                      +|+|++|++++. ++.|.+||+..+.......  ...    ....+.+++|+|+++++++++ .++.|++||+.+ ++..
T Consensus        92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD--VVE----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEE--EEC----CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cCCCCEEEEEecCCCeEEEEECCCCccccccc--ccc----CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            999998877765 8899999995332211111  111    123588899999999888887 789999999987 5433


Q ss_pred             e----eecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          153 C----KYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       153 ~----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                      .    .+.... ...+..++|+|+++++++++ .++.|.+|++........                  ....+...|.+
T Consensus       166 ~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~------------------~~~~~~~~~~~  226 (343)
T 1ri6_A          166 AQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE------------------CVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE------------------EEEEEECSCTT
T ss_pred             eecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE------------------EEeeccccCcc
Confidence            2    122211 23466799999999876655 789999999853110000                  00000000000


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcC--CC--eeeeEEeeccceeceeEEEE
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLR--DL--NLSCKYKGYVNVSSQIKASF  302 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~--~~~~~~~~~~~~~~v~~~~~  302 (408)
                                         ......+..++|+|++++|+ +...++.|.+||+.  ++  +.+..+..+.   .+..++|
T Consensus       227 -------------------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~  284 (343)
T 1ri6_A          227 -------------------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNV  284 (343)
T ss_dssp             -------------------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEE
T ss_pred             -------------------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEE
Confidence                               01123455677777777666 45578999999998  32  3333343322   3678999


Q ss_pred             cCCCCEEEEec-CCceEEEeeccc
Q psy988          303 SHDGKYIVSGS-ENQCIYIWKTHH  325 (408)
Q Consensus       303 s~~~~~l~~~~-~dg~i~iw~~~~  325 (408)
                      +|+|++|++++ .++.|.+|+++.
T Consensus       285 s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          285 DHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcC
Confidence            99999888877 689999997653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=2.1e-27  Score=200.83  Aligned_cols=284  Identities=10%  Similarity=0.083  Sum_probs=192.9

Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec-CCEEEEEeccCCee-eEEE
Q psy988           28 ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY-DGRCIFYTTDQLKY-HTQI  105 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~  105 (408)
                      ..|.++.+..+++++.++.|.+||..+++..  ..+..+...+ .++|+|+|+++++++. ++.|.+||..+++. ....
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL--NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE--EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee--eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence            3456634555778888999999999998876  3444455566 9999999997777666 88999999998875 3222


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee-c
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS---RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-E  181 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  181 (408)
                      ..        +..+..+++|+|++++++++..++   .|.+||+.+++.+..+....   .+..++|+|+|+++++++ .
T Consensus        80 ~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           80 QE--------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             EE--------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEET
T ss_pred             cc--------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecC
Confidence            21        123444499999999999655553   89999999988777665433   256899999998766654 4


Q ss_pred             Cce-EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          182 NQC-IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       182 dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      ++. |.+|++........                      ..    ...                . .....+..++|+|
T Consensus       149 ~~~~i~~~~~~~~g~~~~----------------------~~----~~~----------------~-~~~~~~~~~~~sp  185 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFD----------------------TG----QEF----------------I-SGGTRPFNITFTP  185 (331)
T ss_dssp             TTTEEEEEEECTTCCEEE----------------------EE----EEE----------------E-CSSSSEEEEEECT
T ss_pred             CCceEEEEEECCCCcEee----------------------cC----Ccc----------------c-cCCCCccceEECC
Confidence            577 99999864211100                      00    000                0 1223356677778


Q ss_pred             CCCeEEE-ecCCCeEEEEEcCCCee---eeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCcccccccc
Q psy988          261 GEDKILV-TSNDSRIRLYDLRDLNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRR  335 (408)
Q Consensus       261 ~~~~l~~-~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~  335 (408)
                      +++++++ +..++.|++||+.+++.   +..+...   ..+..++|+|||++|++++ .++.|.+||+.++....     
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-----  257 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-----  257 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-----
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-----
Confidence            8875544 55789999999999887   6666543   3566899999999776654 57889999998763210     


Q ss_pred             Cccccceeeee----ec---cceEEEEecCCchhhhhccCCCCCCCcccEEEEE-ecCCeEEEEeCCCCC
Q psy988          336 DRNDFWEGIKA----HN---AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA-DFNGVIRVFLNKTKP  397 (408)
Q Consensus       336 ~~~~~~~~~~~----h~---~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~  397 (408)
                           +..+..    +.   .....++|+|                ||++|+.+ ..++.|++|++....
T Consensus       258 -----~~~~~~~~~~~~~~~~~~~~~~~sp----------------dg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          258 -----VKSFGHGLLIDPRPLFGANQMALNK----------------TETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             -----EEEEECCCCCCCGGGTTCCCEEECT----------------TSSEEEEEETTTTEEEEEETTSCE
T ss_pred             -----ecccccccccCCCCcccccceEECC----------------CCCEEEEecCCCCcEEEEEecCCc
Confidence                 111111    11   2235689999                88877655 456799999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.97  E-value=1.2e-27  Score=202.80  Aligned_cols=290  Identities=9%  Similarity=0.023  Sum_probs=207.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCC---ceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecC---CceeeEEEE
Q psy988            2 DKTVRLWHISRKECLCCFQHID---FVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEG---QTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~---~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~   74 (408)
                      |++|.+||+.+++.+..+.+..   .+..++|+| +++++ ++++.++.|.+||+.+++.........   |...+..++
T Consensus        10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence            7899999999999999888665   689999999 88665 555667899999999887653222221   233677899


Q ss_pred             EecCCCEEEEEe------------cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           75 FCENGKFAVVGS------------YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        75 ~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      |+|+|+++++++            .++.|.+||+.+.+.......         ...+.+++|+|++++++++  ++.|.
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~  157 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLH  157 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEE
Confidence            999999998886            579999999988775544321         1357788999999988888  58899


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEE--EeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY--IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      +||+.+++....+.......   .+.|+|++++++..+..+...  +|....                            
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~----------------------------  206 (337)
T 1pby_B          158 VMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTAR----------------------------  206 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEB----------------------------
T ss_pred             EEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccc----------------------------
Confidence            99999988776665443212   236899998877665444332  222110                            


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEE
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  300 (408)
                         ...+...                             |       ......|.+||+.+++.. .+........+..+
T Consensus       207 ---~~~~~~~-----------------------------~-------~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~  246 (337)
T 1pby_B          207 ---KDIDPAD-----------------------------P-------TAYRTGLLTMDLETGEMA-MREVRIMDVFYFST  246 (337)
T ss_dssp             ---TTSCTTS-----------------------------G-------GGEEEEEEEEETTTCCEE-EEEEEECSSCEEEE
T ss_pred             ---ccccccc-----------------------------c-------cccccceEEEeCCCCCce-EeecCCCCCceeeE
Confidence               0000000                             0       011126899999988775 33332333456789


Q ss_pred             EEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988          301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV  380 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  380 (408)
                      +|+|+|++++++  ++.|++||+.++            +.+..+. ....+.+++|+|                +|++|+
T Consensus       247 ~~s~dg~~l~~~--~~~v~~~d~~~~------------~~~~~~~-~~~~~~~~~~s~----------------dg~~l~  295 (337)
T 1pby_B          247 AVNPAKTRAFGA--YNVLESFDLEKN------------ASIKRVP-LPHSYYSVNVST----------------DGSTVW  295 (337)
T ss_dssp             EECTTSSEEEEE--ESEEEEEETTTT------------EEEEEEE-CSSCCCEEEECT----------------TSCEEE
T ss_pred             EECCCCCEEEEe--CCeEEEEECCCC------------cCcceec-CCCceeeEEECC----------------CCCEEE
Confidence            999999999988  799999999875            3333333 234578999999                899999


Q ss_pred             EEecCCeEEEEeCCCCCCccccccc
Q psy988          381 SADFNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       381 s~~~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                      +++.|+.|++||+.+++....+++.
T Consensus       296 ~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          296 LGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEcCCCcEEEEECcCCcEEEEEEcC
Confidence            8899999999999999877766553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=5.7e-27  Score=199.18  Aligned_cols=281  Identities=12%  Similarity=0.121  Sum_probs=185.6

Q ss_pred             CEEEEEeCCCcEEEEecCC-CCceeeeeecCCceeeEEEEEecCCCEEEEEecC-CEEEEEecc--CCeeeEEEEEeecc
Q psy988           36 RYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-GRCIFYTTD--QLKYHTQIHVRSTR  111 (408)
Q Consensus        36 ~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~~~~~~~~~~~  111 (408)
                      .++++++.|+.|++|++.. +..... ....+...+.+++|+|+|++|++++.+ +.|.+|+++  +++.........  
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--   82 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--   82 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--
Confidence            3444557799999999963 333322 233466788999999999999998887 999999998  444322111111  


Q ss_pred             ccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEcc---CcccceeecCccccccceEEEEecCCCEEEEee-cCceEE
Q psy988          112 GKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLR---DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIY  186 (408)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~  186 (408)
                           ...+..++|+|+++++++++. ++.|.+||+.   ..+....+...   ..+..++|+|+++++++++ .++.|+
T Consensus        83 -----~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           83 -----PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             -----SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             -----CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEE
Confidence                 126788999999998877765 8899999994   33344444332   2366789999999888887 889999


Q ss_pred             Eeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE
Q psy988          187 IWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI  265 (408)
Q Consensus       187 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (408)
                      +||+.+ +.....                    ....+                      .......+..++|+|+++++
T Consensus       155 ~~d~~~~~~~~~~--------------------~~~~~----------------------~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          155 LFTVSDDGHLVAQ--------------------DPAEV----------------------TTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             EEEECTTSCEEEE--------------------EEEEE----------------------ECSTTCCEEEEEECTTSSEE
T ss_pred             EEEecCCCceeee--------------------ccccc----------------------ccCCCCCcceEEECCCCCEE
Confidence            999965 211100                    00000                      00112244556677777765


Q ss_pred             EE-ecCCCeEEEEEcCC--Cee--eeEEee----ccceeceeEEEEcCCCCEEE-EecCCceEEEeeccccCcccccccc
Q psy988          266 LV-TSNDSRIRLYDLRD--LNL--SCKYKG----YVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRR  335 (408)
Q Consensus       266 ~~-~~~d~~i~i~d~~~--~~~--~~~~~~----~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~  335 (408)
                      ++ +..++.|.+||+..  ++.  ...+..    +.....+..++|+|+|++|+ ++..++.|.+|++......      
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~------  266 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV------  266 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC------
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc------
Confidence            54 45889999999953  433  222221    11123456799999999887 4557899999999732110      


Q ss_pred             CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCC
Q psy988          336 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNK  394 (408)
Q Consensus       336 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~  394 (408)
                        .+.+..+..+.. +.+++|+|                +|++|++++ .|+.|.+|++.
T Consensus       267 --~~~~~~~~~~~~-~~~~~~s~----------------dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          267 --LSKEGFQPTETQ-PRGFNVDH----------------SGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             --EEEEEEEECSSS-CCCEEECT----------------TSSEEEEECTTTCEEEEEEEE
T ss_pred             --eEEeeeecCCCc-cceEEECC----------------CCCEEEEecCCCCeEEEEEEc
Confidence              123333443444 88999999                888888777 68999999554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=6.2e-28  Score=195.79  Aligned_cols=182  Identities=9%  Similarity=0.056  Sum_probs=140.3

Q ss_pred             CCceEEEEec-cCCeeEeEEE-eCCceEEEEEcC--CCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc---eeeEEE
Q psy988            1 MDKTVRLWHI-SRKECLCCFQ-HIDFVTAICFHP--RDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT---KLITAA   73 (408)
Q Consensus         1 ~Dg~i~vwd~-~~~~~~~~~~-h~~~v~~~~~sp--~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~v~~~   73 (408)
                      +|+.|++|++ .+++.+..+. |...++.++|+|  .++.+||+++.|++|+|||+++++..  +.+.+|.   ..+.++
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l--~tL~g~~~~v~~v~~v  232 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL--KKMHIDDSYQASVCHK  232 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE--EEEECCC---CCCEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE--EEEcCCCcceeeeEEE
Confidence            5899999999 4577777665 888888888887  36789999999999999999999876  5676543   467888


Q ss_pred             EEecCCCEE------------EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeE
Q psy988           74 NFCENGKFA------------VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRI  141 (408)
Q Consensus        74 ~~~~~~~~l------------~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  141 (408)
                      +|+|+|.++            ++|+.|++|++||..+++.........   ..+|...+.+..++  +..+++++.|++|
T Consensus       233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~s--g~~lASgS~DgTI  307 (356)
T 2w18_A          233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDVK--DHCAAAILTSGTI  307 (356)
T ss_dssp             EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEEE--TTEEEEEETTSCE
T ss_pred             EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcceeEccccC--CCEEEEEcCCCcE
Confidence            999999986            567889999999999887654332211   12333344444443  7789999999999


Q ss_pred             EEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeee
Q psy988          142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      +|||+.+++++.++.+|.... +..++|+|||++|++|+.|++|++||+
T Consensus       308 kIWDl~tGk~l~tL~gH~~~v-vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLGQCTALLPPVSDQH-WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTTCSEEEEECCC--CC-CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEecCCCCCe-EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999999998776532 335899999999999999999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=1.9e-27  Score=197.81  Aligned_cols=254  Identities=17%  Similarity=0.197  Sum_probs=178.0

Q ss_pred             CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCceeeeeecCC-ceeeEEEEEecC
Q psy988            1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-KKVAVWNEVEGQ-TKLITAANFCEN   78 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~   78 (408)
                      .|++|++||+.+++......|...|.+++|+| ++++|++++ ++.|++||+.+ ++..  .....+ ...+.+++|+|+
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTT
T ss_pred             cceeEEEEeCCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCC
Confidence            37899999999999988888999999999999 999999987 78999999998 7665  334444 467899999999


Q ss_pred             CCEEEEEe--cCCEEEEEec--cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEE-EeeCCCeEEEEEccCc-ccc
Q psy988           79 GKFAVVGS--YDGRCIFYTT--DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDL-NLS  152 (408)
Q Consensus        79 ~~~l~~~~--~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~-~~~  152 (408)
                      |++|++++  .++...+|.+  .+... .     ...    ....+..++|+|+++.|+ ++..++.+++|+++.. ...
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~-----~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTP-R-----LMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCC-E-----ECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCce-E-----Eee----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence            99999998  3345555544  44331 1     111    112588899999999887 6678899999986432 222


Q ss_pred             eeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      ..+..+.  ..+.+++|+|++++|++++ .++.+++|++....           .....+..+...+..+.         
T Consensus       166 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~---------  223 (297)
T 2ojh_A          166 TRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-----------SSVERITDSAYGDWFPH---------  223 (297)
T ss_dssp             EECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-----------SCEEECCCCSEEEEEEE---------
T ss_pred             eEcccCC--CccccceECCCCCEEEEEecCCCCccEEEECCCC-----------CCcEEEecCCcccCCeE---------
Confidence            3333332  3467899999999888766 58899999875211           11122233333444444         


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-----------CeEEEEEcCCCeeeeEEeeccceeceeEE
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND-----------SRIRLYDLRDLNLSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  300 (408)
                                                |+|++++|++++.+           +.|++||+.+++.........+...+..+
T Consensus       224 --------------------------~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  277 (297)
T 2ojh_A          224 --------------------------PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP  277 (297)
T ss_dssp             --------------------------ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC
T ss_pred             --------------------------ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc
Confidence                                      45555555555443           57999999988764444322223367789


Q ss_pred             EEcCCCCEEEEecCCc
Q psy988          301 SFSHDGKYIVSGSENQ  316 (408)
Q Consensus       301 ~~s~~~~~l~~~~~dg  316 (408)
                      +|+|++++|++++.+.
T Consensus       278 ~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          278 NWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CBCTTSSEEEEEEECC
T ss_pred             eECCCCCEEEEEEecc
Confidence            9999999998877653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=1.8e-27  Score=222.49  Aligned_cols=314  Identities=10%  Similarity=0.055  Sum_probs=206.6

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce---eeEEEEEecCCCEEEEEecC---------CE
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---LITAANFCENGKFAVVGSYD---------GR   90 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~   90 (408)
                      ..+.+++|+| +|+++++ +.||+|++||+.+++..  ..+..|..   .|.+++|+|||++|++++.+         +.
T Consensus        17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEE--EEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            3467899999 8987776 78999999999998876  45555554   48999999999999999764         78


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc--------
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS--------  162 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------  162 (408)
                      +.+||+.+++..      .......+...+..++|+|||+.|++++. +.|++||+.+++.......+....        
T Consensus        93 i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           93 YVLSKIPHGDPQ------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             EEEEESSSCCCE------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred             EEEEECCCCceE------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence            899999987641      11112233445888999999999999886 799999999887665544322211        


Q ss_pred             --------cceEEEEecCCCEEEEeecCc----------------------------------eEEEeeeccceeeeeec
Q psy988          163 --------SQIKASFSHDGKYIVSGSENQ----------------------------------CIYIWKTHHDYAKFSSV  200 (408)
Q Consensus       163 --------~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~  200 (408)
                              .+..++|+|||++|++++.++                                  .|++||+.++.......
T Consensus       166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                    236799999999999887553                                  68888876543211000


Q ss_pred             ccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC-----------CCceeeec-CCCcee----eeeccCCCCCe
Q psy988          201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS-----------ESTGYVLN-ATGRKI----SGIEPMPGEDK  264 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~i----~~~~~~~~~~~  264 (408)
                            .......+...+..++|+|||+.++........           ........ .+...+    ..++|+|||+.
T Consensus       246 ------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          246 ------PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             ------CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             ------CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe
Confidence                  001122346788999999999988654332211           11111111 122223    37899999998


Q ss_pred             EEEe--cCCC------eEEEEE-cCCCee--eeEEeeccceeceeE-EEEcCCCCEEEEecCC---ceEEEeeccccCcc
Q psy988          265 ILVT--SNDS------RIRLYD-LRDLNL--SCKYKGYVNVSSQIK-ASFSHDGKYIVSGSEN---QCIYIWKTHHDYAK  329 (408)
Q Consensus       265 l~~~--~~d~------~i~i~d-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~  329 (408)
                      |+..  ..++      .|.+|| ..+++.  ...+....  ..+.. ++|+|||+.|+..+.+   +.+++|++..... 
T Consensus       320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~-  396 (723)
T 1xfd_A          320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-  396 (723)
T ss_dssp             EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-
T ss_pred             EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-
Confidence            8754  4566      577777 344441  33333211  12333 6899999999765544   7899999875321 


Q ss_pred             ccccccCccccceeeee---eccceEEEEecCCchhhhh
Q psy988          330 FSSVRRDRNDFWEGIKA---HNAVVTCAVFAPCPELIIA  365 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~  365 (408)
                               .....+..   |...+..++|+|+|++++.
T Consensus       397 ---------~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          397 ---------FNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             ---------CCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             ---------CCcceecccccCCCCeEEEEECCCCCEEEE
Confidence                     01112222   5667889999995444443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=1.8e-26  Score=195.09  Aligned_cols=268  Identities=10%  Similarity=0.101  Sum_probs=185.5

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      |+.|.+||+.+++.+..+. +...+ .++|+| +++++++++. ++.|.+||+.+++.. ...+..+..+..+++|+|+|
T Consensus        19 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg   95 (331)
T 3u4y_A           19 LRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQEGQSSMADVDITPDD   95 (331)
T ss_dssp             GTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCE-EEEEEECSSCCCCEEECTTS
T ss_pred             CCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCcee-EEecccCCCCccceEECCCC
Confidence            6899999999999988887 55666 999999 8886666655 889999999988862 14555555555559999999


Q ss_pred             CEEEEEecCC---EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCe-EEEEEccCccccee
Q psy988           80 KFAVVGSYDG---RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSR-IRLYDLRDLNLSCK  154 (408)
Q Consensus        80 ~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~  154 (408)
                      ++++++..++   .|.+||+.+++.......         .....+++|+|++++++++ ..++. |.+|++.....+..
T Consensus        96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A           96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             SEEEECCCSSSSCEEEEEETTTTEEEEEEEC---------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CEEEEecCCCCcccEEEEECCCCCeEEEEEC---------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence            9999655553   999999998876544321         2356899999999877666 44577 99999875433211


Q ss_pred             e--cCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          155 Y--KGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       155 ~--~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      .  ........+..++|+|+|+++++++ .++.|++||+.++...                   ..+..+          
T Consensus       167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-------------------~~~~~~----------  217 (331)
T 3u4y_A          167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-------------------TLLNAV----------  217 (331)
T ss_dssp             EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-------------------EEEEEE----------
T ss_pred             cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-------------------ceeeec----------
Confidence            1  0001123366899999999766554 5889999998653210                   000000          


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCee--eeEEeec----cc-eeceeEEEEc
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNL--SCKYKGY----VN-VSSQIKASFS  303 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~--~~~~~~~----~~-~~~v~~~~~s  303 (408)
                                      .....+..++|+|+|++++++ ..++.|.+||+.+++.  +..+...    .. ......++|+
T Consensus       218 ----------------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  281 (331)
T 3u4y_A          218 ----------------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN  281 (331)
T ss_dssp             ----------------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred             ----------------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence                            012344567777888866655 4578899999999877  3333322    11 1112457999


Q ss_pred             CCCCEEEEe-cCCceEEEeecccc
Q psy988          304 HDGKYIVSG-SENQCIYIWKTHHD  326 (408)
Q Consensus       304 ~~~~~l~~~-~~dg~i~iw~~~~~  326 (408)
                      |||++|+++ ..++.|.+||+...
T Consensus       282 pdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          282 KTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCEEEEecCCCCcEEEEEecCC
Confidence            999988655 45679999999764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.96  E-value=2.7e-25  Score=189.03  Aligned_cols=282  Identities=11%  Similarity=0.091  Sum_probs=182.1

Q ss_pred             CceEEEEecc--CCeeEe--EEEeCCceEEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            2 DKTVRLWHIS--RKECLC--CFQHIDFVTAICFHPRDDRYFLSGSL---DGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~--~~~~~~--~~~h~~~v~~~~~sp~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      ++.|.+|+++  +++...  ...+...+..++|+| +++ |++++.   ++.|.+|++.++.......+..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            3457777664  565543  345778899999999 888 555544   6899999998877554455556677889999


Q ss_pred             EecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeecccc----ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc-C
Q psy988           75 FCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGK----NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-D  148 (408)
Q Consensus        75 ~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~  148 (408)
                      |+|+|++|++++ .++.+.+|++...............+.    ......+.+++|+|+++.+++...++.|++|++. +
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999998888 679999999963222222211111111    0122358899999999955555668899999998 4


Q ss_pred             ccccee--ecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          149 LNLSCK--YKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       149 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      ++....  +.... ...+..++|+|+|++++++ ..++.|.+|++........                  .+..+...|
T Consensus       173 g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~------------------~~~~~~~~~  233 (347)
T 3hfq_A          173 GQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT------------------QLGIVKTIP  233 (347)
T ss_dssp             SCEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE------------------EEEEEESSC
T ss_pred             CcEEEeeeEEcCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE------------------EeeeeeecC
Confidence            443221  11111 1235679999999976664 5678999999863111000                  000111001


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEcCCC---eeeeEEeeccceeceeEEE
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDLRDL---NLSCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~  301 (408)
                      .+                   ......+..++|+|||++|+ +...++.|.+|++...   +.+..+..+  ...+..++
T Consensus       234 ~~-------------------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~  292 (347)
T 3hfq_A          234 AD-------------------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE--GDFPRDFD  292 (347)
T ss_dssp             TT-------------------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS--SSCCCEEE
T ss_pred             CC-------------------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC--CCCcCeEE
Confidence            00                   01113466777888888764 4566899999999732   333344332  22567899


Q ss_pred             EcCCCCEEEEecC-CceEEEeeccc
Q psy988          302 FSHDGKYIVSGSE-NQCIYIWKTHH  325 (408)
Q Consensus       302 ~s~~~~~l~~~~~-dg~i~iw~~~~  325 (408)
                      |+|||++|++++. ++.|.+|+++.
T Consensus       293 ~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          293 LDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            9999999888765 48999996643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=9.4e-27  Score=193.58  Aligned_cols=258  Identities=14%  Similarity=0.139  Sum_probs=179.9

Q ss_pred             EEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC-CeeeEEEEEeeccccccCCC
Q psy988           40 SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGR  118 (408)
Q Consensus        40 t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~  118 (408)
                      .++.|+.|++||+.+++..   .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ .+.....     .  ..+..
T Consensus        17 ~~~~~~~i~~~d~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-----~--~~~~~   85 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR---VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-----T--GFATI   85 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE---EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-----C--TTCCC
T ss_pred             CCCcceeEEEEeCCCCcee---eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-----c--ccccc
Confidence            3457899999999988754   4556788999999999999999976 88999999988 6542211     1  11235


Q ss_pred             CeEEEeeCCCCCeEEEee--CCCeEEEE--EccCcccceeecCccccccceEEEEecCCCEEE-EeecCceEEEeeeccc
Q psy988          119 KISGIEPMPGEDKILVTS--NDSRIRLY--DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD  193 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~--~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~  193 (408)
                      .+.+++|+|++++|++++  .++...+|  ++.+++ ...+..+.   .+..++|+|++++|+ ++..++.+++|++...
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            788999999999999998  33445555  545444 33333322   266789999999887 6778999999987432


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCC
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDS  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~  272 (408)
                      ...           ...+..+                                   ...+.+++|+|++++|++++ .++
T Consensus       162 ~~~-----------~~~~~~~-----------------------------------~~~~~~~~~s~dg~~l~~~~~~~~  195 (297)
T 2ojh_A          162 SGV-----------ETRLTHG-----------------------------------EGRNDGPDYSPDGRWIYFNSSRTG  195 (297)
T ss_dssp             TCC-----------EEECCCS-----------------------------------SSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCc-----------ceEcccC-----------------------------------CCccccceECCCCCEEEEEecCCC
Confidence            100           1112222                                   23445555666666566554 588


Q ss_pred             eEEEEEcC-CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC-----------ceEEEeeccccCccccccccCcccc
Q psy988          273 RIRLYDLR-DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----------QCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       273 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      .+++|++. .+.....+..+.  ..+..++|+|+|++|++++.+           +.|++||+.++..          ..
T Consensus       196 ~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~~  263 (297)
T 2ojh_A          196 QMQIWRVRVDGSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----------ET  263 (297)
T ss_dssp             SCEEEEEETTSSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----------EE
T ss_pred             CccEEEECCCCCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----------ee
Confidence            89999886 455555555543  367789999999999988765           5799999987521          22


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG  386 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  386 (408)
                      +..+.+|...+.+++|+|                +++.|++++.|.
T Consensus       264 ~~~~~~~~~~~~~~~~sp----------------dg~~l~~~~~~~  293 (297)
T 2ojh_A          264 LFDLFGGQGTMNSPNWSP----------------DGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEESTTTSCSCCBCT----------------TSSEEEEEEECC
T ss_pred             eeccCCCCcccccceECC----------------CCCEEEEEEecc
Confidence            344557888999999999                888888877653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=3.6e-25  Score=188.84  Aligned_cols=287  Identities=7%  Similarity=0.031  Sum_probs=200.8

Q ss_pred             eEEEeCCceEEEEEcCCCCCEEEEEeC-------CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecC
Q psy988           17 CCFQHIDFVTAICFHPRDDRYFLSGSL-------DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYD   88 (408)
Q Consensus        17 ~~~~h~~~v~~~~~sp~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d   88 (408)
                      ........+..++|+| +++++++++.       ++.|.+||..+++...  .+.. ...+..++|+|+|++++++ ..+
T Consensus        35 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~-~~~~~~~~~s~dg~~l~v~~~~~  110 (353)
T 3vgz_A           35 LRKAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIHN-DLKPFGATINNTTQTLWFGNTVN  110 (353)
T ss_dssp             EEEEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEEE-SSCCCSEEEETTTTEEEEEETTT
T ss_pred             hhhhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEec-CCCcceEEECCCCCEEEEEecCC
Confidence            3445677899999999 8888887774       5689999999987663  3332 3347789999999966555 457


Q ss_pred             CEEEEEeccCCeeeEEEEEeecccc-ccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccceeecCccccccce
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGK-NATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQI  165 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  165 (408)
                      +.|.+||..+++............. ......+.+++|+|+++++++++  .++.|.+||+++++....+.....  .+.
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~  188 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK--MST  188 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT--TCC
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC--ccc
Confidence            9999999998876555443211100 00011368899999999888876  478999999999888777663322  255


Q ss_pred             EEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceee
Q psy988          166 KASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV  245 (408)
Q Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
                      .++|+|+++++++++.++.|.+||..++.........        ..                                 
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~---------------------------------  227 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--------DD---------------------------------  227 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--------CS---------------------------------
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--------CC---------------------------------
Confidence            6899999999999999999999998765332110000        00                                 


Q ss_pred             ecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeec
Q psy988          246 LNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKT  323 (408)
Q Consensus       246 ~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~  323 (408)
                        .+...+..++|+|++++++++ ..++.|.+||..+++....+....    ...++|+|+|+++++++ .++.|.+||.
T Consensus       228 --~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          228 --GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             --SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             --CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence              112234445556666655554 455999999999999887776532    24689999999666554 6899999999


Q ss_pred             cccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988          324 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                      .++            +.+..+.. ...+.+++|+|                +|++|+.+..+
T Consensus       302 ~~~------------~~~~~~~~-~~~~~~~~~s~----------------dg~~l~v~~~~  334 (353)
T 3vgz_A          302 KSY------------KVVKTFDT-PTHPNSLALSA----------------DGKTLYVSVKQ  334 (353)
T ss_dssp             TTT------------EEEEEEEC-CSEEEEEEECT----------------TSCEEEEEEEC
T ss_pred             CCC------------eEEEEEec-CCCCCeEEEcC----------------CCCEEEEEEcc
Confidence            876            34444443 34678999999                78766666554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=1.3e-25  Score=209.29  Aligned_cols=266  Identities=9%  Similarity=0.044  Sum_probs=184.5

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-----CCceeeeeecCCcee-------
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-----KKVAVWNEVEGQTKL-------   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~-------   69 (408)
                      |+.|++||+.+++......+...+.+++||| +|++|+++ .|+.|++|++.+     ++...  ....+...       
T Consensus       100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~--~~~~~~~~~~~g~~~  175 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIA--VTIDGTETLVYGQAV  175 (706)
T ss_dssp             TTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEE--SCSCCBTTEEESSCC
T ss_pred             CCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEE--eccCCCCCeEcccch
Confidence            5789999999998888777888999999999 99999985 679999999998     76542  22222222       


Q ss_pred             -------eEEEEEecCCCEEEEEe---------------------------------cCCEEEEEeccCCeeeEEEEEee
Q psy988           70 -------ITAANFCENGKFAVVGS---------------------------------YDGRCIFYTTDQLKYHTQIHVRS  109 (408)
Q Consensus        70 -------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iw~~~~~~~~~~~~~~~  109 (408)
                             +.++.|+|||++|++++                                 .+..|.+||+.+++....     
T Consensus       176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-----  250 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-----  250 (706)
T ss_dssp             GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-----
T ss_pred             hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-----
Confidence                   48899999999999987                                 346899999988764211     


Q ss_pred             ccccccCCCCeEEEeeCCCCCeEEEeeCCC-----eEEEEEccCcccceeecCccccc---cceEEEEec--CCCEEEEe
Q psy988          110 TRGKNATGRKISGIEPMPGEDKILVTSNDS-----RIRLYDLRDLNLSCKYKGYVNVS---SQIKASFSH--DGKYIVSG  179 (408)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~  179 (408)
                       .....+...+..++|+|+++.|++++.++     .|++||+.+++....+.......   .+..+.|+|  +|++++++
T Consensus       251 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          251 -QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             -CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             -ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence             11123445789999999999999987665     89999999883333332111111   134578999  99999999


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      ..++.+++|++....           .....+..+...+..                                  .++|+
T Consensus       330 ~~~g~~~l~~~~~~~-----------~~~~~l~~~~~~v~~----------------------------------~~~~s  364 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTG-----------RLIRQVTKGEWEVTN----------------------------------FAGFD  364 (706)
T ss_dssp             CTTSSCEEEEEETTS-----------CEEEECCCSSSCEEE----------------------------------EEEEC
T ss_pred             ccCCccEEEEEECCC-----------CEEEecCCCCeEEEe----------------------------------eeEEc
Confidence            999999999875211           111222233333333                                  13445


Q ss_pred             CCCCeEEE-ecCCC----eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC----ceEEEeecccc
Q psy988          260 PGEDKILV-TSNDS----RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN----QCIYIWKTHHD  326 (408)
Q Consensus       260 ~~~~~l~~-~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~  326 (408)
                      |+++.|+. +..++    .|..||+.+++. ..+. +  ...+.+++|+|||++|+....+    +.|++||+.++
T Consensus       365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~--~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          365 PKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-P--ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             TTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-C--SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             CCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-C--CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            55554444 44444    677778777653 2332 2  2357789999999998876433    56999999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=6.7e-26  Score=212.38  Aligned_cols=299  Identities=10%  Similarity=0.071  Sum_probs=207.7

Q ss_pred             eEEEEeccCCeeEeEEE-eCC------------------------ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCC---
Q psy988            4 TVRLWHISRKECLCCFQ-HID------------------------FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK---   55 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~------------------------~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~---   55 (408)
                      +|++||+.+++....+. +..                        .|.+++||| ||++|++++. +.|++||+.++   
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~  142 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKA  142 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTT
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcc
Confidence            89999999999888776 322                        388999999 9999999986 99999999988   


Q ss_pred             CceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccccc--------CCCCeEEEeeCC
Q psy988           56 KVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA--------TGRKISGIEPMP  127 (408)
Q Consensus        56 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~  127 (408)
                      ..   ..+..|...+..++|+|||++|+.++ ++.|.+||+.+++..............+        ....+..+.|+|
T Consensus       143 ~~---~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp  218 (741)
T 2ecf_A          143 AV---RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP  218 (741)
T ss_dssp             SC---CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT
T ss_pred             eE---EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC
Confidence            44   35677788899999999999999887 5699999998865432111000000000        001257899999


Q ss_pred             CCCeEEEeeCCC---------------------------------eEEEEEccC-cccceeecCccccccceEEEEecCC
Q psy988          128 GEDKILVTSNDS---------------------------------RIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus       128 ~~~~l~~~~~dg---------------------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      ||++|++++.|+                                 .|++||+.+ ++.............+..++| |||
T Consensus       219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg  297 (741)
T 2ecf_A          219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP  297 (741)
T ss_dssp             TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET
T ss_pred             CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC
Confidence            999999987665                                 789999988 775544332123345778999 999


Q ss_pred             CEEEEeec-----CceEEEeeeccceeeeeecccCCCccccccccccc----eEEEEEEeCCcceeeeecCCCC------
Q psy988          174 KYIVSGSE-----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA----VVTCAVFAPCPELIIAQMEPDK------  238 (408)
Q Consensus       174 ~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~------  238 (408)
                      ++|+++..     +..|++||+.++.....            +..+..    .+..++|+|+|+.++.......      
T Consensus       298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVL------------AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             TEEEEEEEETTSSEEEEEEEETTTCCEEEE------------EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred             CEEEEEEecccCCeEEEEEEECCCCceEEE------------EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence            99987754     56899999876543221            111111    3457889999996655433221      


Q ss_pred             --CCCceeeecCCCceeeee-ccCCCCCeEEEe-cCCC--eEEEEEcCC-CeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          239 --SESTGYVLNATGRKISGI-EPMPGEDKILVT-SNDS--RIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       239 --~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~-~~d~--~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                        ... ...+..+...+..+ .|+|+++.|+.. +.++  .++||++.. ++....+..   ...+..++|||||++|+.
T Consensus       366 ~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~---~~~~~~~~~spdg~~l~~  441 (741)
T 2ecf_A          366 DSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK---APGMHSASFARNASVYVD  441 (741)
T ss_dssp             CSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC---SCSEEEEEECTTSSEEEE
T ss_pred             cCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc---CCCceEEEECCCCCEEEE
Confidence              112 33444556667776 599999987654 4455  899999864 554555544   225678999999999886


Q ss_pred             ecCC----ceEEEeeccc
Q psy988          312 GSEN----QCIYIWKTHH  325 (408)
Q Consensus       312 ~~~d----g~i~iw~~~~  325 (408)
                      ...+    ..+++|+...
T Consensus       442 ~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          442 SWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             EEEETTEEEEEEEEETTS
T ss_pred             EecCCCCCCeEEEEEcCC
Confidence            5433    5788888754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.95  E-value=1.8e-23  Score=178.79  Aligned_cols=297  Identities=11%  Similarity=0.111  Sum_probs=189.5

Q ss_pred             CceEEEEec--cCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCC----CcEEEEecCC--CCceeeeeecCCceeeEE
Q psy988            2 DKTVRLWHI--SRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLD----GKLRLWNIPD--KKVAVWNEVEGQTKLITA   72 (408)
Q Consensus         2 Dg~i~vwd~--~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~d----g~i~iw~~~~--~~~~~~~~~~~~~~~v~~   72 (408)
                      ++.|.+|.+  ++++...... +...+..++|+| ++++|++++.+    +.|.+|++..  +..........+......
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~  104 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY  104 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred             CCCEEEEEEeCCCCCEEEeecccCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence            467888876  4555443322 788899999999 99999999885    7999999876  444433444445556777


Q ss_pred             EEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEE-Eeeccc-----cccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEE
Q psy988           73 ANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIH-VRSTRG-----KNATGRKISGIEPMPGEDKILVTSN-DSRIRLY  144 (408)
Q Consensus        73 ~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~  144 (408)
                      +++  ++++|++++ .++.+.+|++.......... .....+     ...+...+.+++|+|+++++++++. ++.|.+|
T Consensus       105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF  182 (361)
T ss_dssp             EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence            777  888887776 57899999997543221110 000000     1112335688999999998777654 7899999


Q ss_pred             EccCccc------c------eeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCcccccc
Q psy988          145 DLRDLNL------S------CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  211 (408)
Q Consensus       145 d~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (408)
                      ++.....      +      ..... .....+..++|+|+|+++++++ .++.|.+|++.++....              
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~--------------  247 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE--------------  247 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE--------------
T ss_pred             EEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE--------------
Confidence            9875432      1      11111 1123356799999999888777 58899999986432110              


Q ss_pred             ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC--CCeEEEEEcC--CCee--e
Q psy988          212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLR--DLNL--S  285 (408)
Q Consensus       212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~--~~~~--~  285 (408)
                            +..+...+                      .+...+..++|+|||++|+++..  ++.|.+|++.  +++.  +
T Consensus       248 ------~~~~~~~~----------------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~  299 (361)
T 3scy_A          248 ------IQTVAADT----------------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV  299 (361)
T ss_dssp             ------EEEEESCS----------------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred             ------eEEEecCC----------------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence                  00000000                      11223456777778887766554  5899999996  4443  3


Q ss_pred             eEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccceee-eeeccceEEEEec
Q psy988          286 CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFA  357 (408)
Q Consensus       286 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~  357 (408)
                      ..+..   ...+..++|+|||++|++++ .++.|.+|+++....          ++.... ..+...+.|+.|.
T Consensus       300 ~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g----------~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          300 GYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG----------LLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC----------CEEECSCCEECSSEEEEEEE
T ss_pred             eEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC----------cEeecceeeeCCCCeEEEEc
Confidence            33332   23567899999999988877 678999977653211          111111 2244568888885

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=5.1e-24  Score=181.16  Aligned_cols=277  Identities=10%  Similarity=0.060  Sum_probs=177.6

Q ss_pred             CCcEEEEecCC--CCceeeeeecCCceeeEEEEEecCCCEEEEEec---CCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988           44 DGKLRLWNIPD--KKVAVWNEVEGQTKLITAANFCENGKFAVVGSY---DGRCIFYTTDQLKYHTQIHVRSTRGKNATGR  118 (408)
Q Consensus        44 dg~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  118 (408)
                      ++.|.+|+++.  ++.... ....+...+..++|+|+|+ |++++.   ++.|.+|++.++.........      .+..
T Consensus        15 ~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~------~~~~   86 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV------APGT   86 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE------EESC
T ss_pred             CCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee------cCCC
Confidence            45677877754  444322 2334456678899999999 665554   589999999776532222111      1234


Q ss_pred             CeEEEeeCCCCCeEEEee-CCCeEEEEEccC-cc--cceeecCcc-------ccccceEEEEecCCCEEEEeecCceEEE
Q psy988          119 KISGIEPMPGEDKILVTS-NDSRIRLYDLRD-LN--LSCKYKGYV-------NVSSQIKASFSHDGKYIVSGSENQCIYI  187 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~dg~i~i  187 (408)
                      .+..++|+|++++|++++ .++.|.+|++.. +.  .+..+....       ....+.+++|+|+|+.+++...++.|++
T Consensus        87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~  166 (347)
T 3hfq_A           87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYV  166 (347)
T ss_dssp             CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEE
Confidence            678899999999998887 679999999963 22  222221111       1123567999999996666666889999


Q ss_pred             eeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE
Q psy988          188 WKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL  266 (408)
Q Consensus       188 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (408)
                      |++.. +....                    +..+..                        .....+..++|+|||++++
T Consensus       167 ~~~~~~g~~~~--------------------~~~~~~------------------------~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          167 YNVSDAGQLSE--------------------QSVLTM------------------------EAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEECTTSCEEE--------------------EEEEEC------------------------CTTCCEEEEEECTTSSEEE
T ss_pred             EEECCCCcEEE--------------------eeeEEc------------------------CCCCCCceEEECCCCCEEE
Confidence            99862 11000                    000000                        1112344567777777555


Q ss_pred             E-ecCCCeEEEEEcCC--Ceeee--EEeeccc----eeceeEEEEcCCCCEEE-EecCCceEEEeeccccCccccccccC
Q psy988          267 V-TSNDSRIRLYDLRD--LNLSC--KYKGYVN----VSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRRD  336 (408)
Q Consensus       267 ~-~~~d~~i~i~d~~~--~~~~~--~~~~~~~----~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~  336 (408)
                      + ...++.|.+|++..  ++...  .+.....    ...+..++|+|||++|+ +...++.|.+|++.....        
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~--------  274 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH--------  274 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC--------
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc--------
Confidence            5 56789999999874  54322  2222111    13467899999999885 455689999999974210        


Q ss_pred             ccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-CCeEEEEeC--CCCC
Q psy988          337 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-NGVIRVFLN--KTKP  397 (408)
Q Consensus       337 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~v~iw~~--~~~~  397 (408)
                       ...+..+..+...+..++|+|                ||++|++++. ++.|.+|++  .+++
T Consensus       275 -~~~~~~~~~~~~~~~~~~~sp----------------dg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          275 -LTLIQQISTEGDFPRDFDLDP----------------TEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             -EEEEEEEECSSSCCCEEEECT----------------TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             -EEEeEEEecCCCCcCeEEECC----------------CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence             133444555566789999999                8998888776 489999954  4554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.2e-25  Score=210.08  Aligned_cols=298  Identities=13%  Similarity=0.074  Sum_probs=198.8

Q ss_pred             CceEEEEeccCCeeEeEEE-eCC---ceEEEEEcCCCCCEEEEEeCC---------CcEEEEecCCCCceeeeeecCCce
Q psy988            2 DKTVRLWHISRKECLCCFQ-HID---FVTAICFHPRDDRYFLSGSLD---------GKLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~---~v~~~~~sp~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      ||+|++||+.+++....+. |..   .|.+++||| ||++|++++.+         +.|.+||+.+++...+.....|..
T Consensus        36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  114 (723)
T 1xfd_A           36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (723)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence            7899999999999888887 443   499999999 99999999874         778899999987643344445666


Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc-ccc---------CCCCeEEEeeCCCCCeEEEeeCC
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG-KNA---------TGRKISGIEPMPGEDKILVTSND  138 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~---------~~~~v~~~~~~~~~~~l~~~~~d  138 (408)
                      .+..++|+|||++|+.++. +.|++|++.+++............ ..+         ....+.+++|+|||+.|++++.+
T Consensus       115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence            6889999999999999876 799999998876543221100000 000         01134789999999999998654


Q ss_pred             C----------------------------------eEEEEEccCcccceeecCcc----ccccceEEEEecCCCEEEEee
Q psy988          139 S----------------------------------RIRLYDLRDLNLSCKYKGYV----NVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       139 g----------------------------------~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      +                                  .|++||+.+++....+..+.    ....+..++|+|||+++++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence            3                                  79999999887655554431    123467899999999887764


Q ss_pred             c----CceEEEeeeccceeeeeecccCCCccccccccccceE----EEEEEeCCcceeeee-cCCCC-------------
Q psy988          181 E----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV----TCAVFAPCPELIIAQ-MEPDK-------------  238 (408)
Q Consensus       181 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~-~~~~~-------------  238 (408)
                      .    +..|++||+.++.......           ..+...+    ..++|+|+|+.++.. .....             
T Consensus       274 ~~~~~~~~i~~~d~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~  342 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVCTKKHE-----------DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS  342 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCEEEEEE-----------EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred             cCCCCeEEEEEEeCCCCcceEEEE-----------eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence            3    3579999987654321100           1111222    367899999987754 21111             


Q ss_pred             -CCCc---eeeecCCCceeee-eccCCCCCeEEEecCC---CeEEEEEcCCCe--eeeEEeec-cceeceeEEEEcCCCC
Q psy988          239 -SEST---GYVLNATGRKISG-IEPMPGEDKILVTSND---SRIRLYDLRDLN--LSCKYKGY-VNVSSQIKASFSHDGK  307 (408)
Q Consensus       239 -~~~~---~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---~~i~i~d~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~  307 (408)
                       ....   ...+......+.. ++|+||++.|+..+.+   +.+++|++....  ....+... .+...+..++|+|||+
T Consensus       343 ~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~  422 (723)
T 1xfd_A          343 QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD  422 (723)
T ss_dssp             SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred             cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence             0111   1222222233443 6899999999766544   789999986432  22223221 0223567899999999


Q ss_pred             EEEEe
Q psy988          308 YIVSG  312 (408)
Q Consensus       308 ~l~~~  312 (408)
                      +|+..
T Consensus       423 ~l~~~  427 (723)
T 1xfd_A          423 FFLLK  427 (723)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.9e-24  Score=182.44  Aligned_cols=252  Identities=10%  Similarity=0.073  Sum_probs=187.4

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCce---------eeE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---------LIT   71 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~v~   71 (408)
                      ++.|.+||..+++.+..+.....+..++|+| +++++ ++...++.|.+||..+++...  .+..+..         .+.
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~  144 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKG--RLVLDDRKRTEEVRPLQPR  144 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEE--EEESCCCCCCSSCCCCEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEE--EEecCCCccccccCCCCCc
Confidence            5789999999999999998777899999999 88755 455557999999999988753  3433321         278


Q ss_pred             EEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCc
Q psy988           72 AANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  149 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  149 (408)
                      ++.|+|+|+++++++  .++.|.+||..+.+......        .+...+.+++|+|+++.+++++.++.|.+||+.++
T Consensus       145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~  216 (353)
T 3vgz_A          145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------NTGKMSTGLALDSEGKRLYTTNADGELITIDTADN  216 (353)
T ss_dssp             EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred             eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            899999999888776  47899999999887654432        11235778999999999999999999999999998


Q ss_pred             ccceeecCcc--ccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          150 NLSCKYKGYV--NVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       150 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      +....+....  ....+..++|+|+++++++++. ++.|.+||..++.....            +...            
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~~~~------------  272 (353)
T 3vgz_A          217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK------------VAAP------------  272 (353)
T ss_dssp             EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE------------EECS------------
T ss_pred             eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE------------EEcC------------
Confidence            8776655421  1233567899999998777665 48999999865432211            1000            


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  305 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  305 (408)
                                               ....++|+|+++++++ ...++.|.+||..+++.+..+....   .+..++|+|+
T Consensus       273 -------------------------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d  324 (353)
T 3vgz_A          273 -------------------------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD  324 (353)
T ss_dssp             -------------------------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred             -------------------------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence                                     0123555666664444 4578999999999999888776533   4578999999


Q ss_pred             CCEEEEecCCc
Q psy988          306 GKYIVSGSENQ  316 (408)
Q Consensus       306 ~~~l~~~~~dg  316 (408)
                      |++|+++..++
T Consensus       325 g~~l~v~~~~~  335 (353)
T 3vgz_A          325 GKTLYVSVKQK  335 (353)
T ss_dssp             SCEEEEEEECC
T ss_pred             CCEEEEEEccc
Confidence            99887766553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=2e-25  Score=203.07  Aligned_cols=271  Identities=10%  Similarity=0.050  Sum_probs=185.8

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCc-eeeEEEEEecCCCEEEEEec---CCEEEEEe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQT-KLITAANFCENGKFAVVGSY---DGRCIFYT   95 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iw~   95 (408)
                      +..+|++++|+| ||++||+++. ||+++||++++++..   .+..|. ..+..+.|+|| +.+++++.   +....+|.
T Consensus        20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~---~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETV---KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEE---ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcE---eeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            466899999999 9999999887 999999999776544   455555 68999999999 77777765   45556665


Q ss_pred             ccC--CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeE-EEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           96 TDQ--LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKI-LVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        96 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +..  .....  ...   .    .......+|+|+++.+ ++.+.++.+.+||+.+++.......+.     .+++|+||
T Consensus        95 ~~~~~~g~~~--~l~---~----~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spD  160 (582)
T 3o4h_A           95 VNTSRPGEEQ--RLE---A----VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIR  160 (582)
T ss_dssp             EETTSTTCCE--ECT---T----SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEE
T ss_pred             EeccCCCccc--ccc---C----CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCC
Confidence            543  22111  111   1    1134456888888643 344445556699999887654443221     57899999


Q ss_pred             CCEEEEeecC----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC
Q psy988          173 GKYIVSGSEN----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA  248 (408)
Q Consensus       173 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (408)
                      |++|++++.+    +.|++||+.++..             ..+..+.                                 
T Consensus       161 G~~la~~~~~~~~~~~i~~~d~~~g~~-------------~~l~~~~---------------------------------  194 (582)
T 3o4h_A          161 GDLIAGLGFFGGGRVSLFTSNLSSGGL-------------RVFDSGE---------------------------------  194 (582)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETTTCCC-------------EEECCSS---------------------------------
T ss_pred             CCEEEEEEEcCCCCeEEEEEcCCCCCc-------------eEeecCC---------------------------------
Confidence            9999988877    7899999865321             1222333                                 


Q ss_pred             CCceeeeeccCCCCCeEEEecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEE--------EcCCCCEEEEecCCceE
Q psy988          249 TGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKAS--------FSHDGKYIVSGSENQCI  318 (408)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i  318 (408)
                        ..+..++|+|||+.|+++..++  .|++||+.+++.. .+..+..  .+..++        |+|||.++++++.|+.+
T Consensus       195 --~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          195 --GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSSYRPTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             --CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             --CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--ChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence              3344555666666777777788  8999999988876 5554433  334455        99999889999999999


Q ss_pred             EEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCC---eEEEEeCCC
Q psy988          319 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNG---VIRVFLNKT  395 (408)
Q Consensus       319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~v~iw~~~~  395 (408)
                      ++|++  +            +...   .+.+.|.+++|+                 +++++++++.+.   .+.+|+...
T Consensus       270 ~l~~~--g------------~~~~---~~~~~v~~~~~s-----------------dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          270 AVFID--G------------ERVE---APQGNHGRVVLW-----------------RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEET--T------------EEEC---CCSSEEEEEEEE-----------------TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEE--C------------Ceec---cCCCceEEEEec-----------------CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            99999  3            1221   233568889998                 356777777664   466676653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=1.6e-24  Score=184.61  Aligned_cols=305  Identities=12%  Similarity=0.100  Sum_probs=188.1

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc-eeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEE
Q psy988           27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT-KLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      .+++++ ++.++++++.++.|.+||+.+++..  ..+..+. ..+..++|+|+|++++ +...++.|.+||+.+++....
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVY--KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEE--EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEE--EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            356788 8899999999999999999988765  3443332 2577899999998665 445689999999998876544


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------------CeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      .......  ......+..++|+|+++++++++.+            +.|.+||+.+++.............+.+++|+|+
T Consensus        81 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           81 ANLSSVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  158 (349)
T ss_dssp             EESCCST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             EEccccc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence            4321100  0001247789999999999998865            8999999998654332222222234667889999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      |+ +++++  +.|++||..++.............        ..     ...|+...+   +.. ....      .....
T Consensus       159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~---~~~-~~~~------~~~~~  212 (349)
T 1jmx_B          159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR--------KG-----YSAPDVLYF---WPH-QSPR------HEFSM  212 (349)
T ss_dssp             SC-EEEES--SSEEEECTTTCCEEEEECSTTCCC--------TT-----BCCCBCCCC---CCC-CCTT------CEEEE
T ss_pred             Cc-EEEcc--CcEEEEeCCCCceeccccccccCC--------cc-----ccCccceee---ecC-CCcc------eeEEe
Confidence            99 66654  349999987654322111000000        00     000000000   000 0000      00001


Q ss_pred             eeeeccCCCCCe-----------EEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEecCCceEEE
Q psy988          253 ISGIEPMPGEDK-----------ILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYI  320 (408)
Q Consensus       253 i~~~~~~~~~~~-----------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  320 (408)
                      +..+++++++..           +......+.+++|++.           .....+..++|+| ++++++++  ++.|.+
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~  279 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPNQIYGV--LNRLAK  279 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------cCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence            223444433321           1122333444444431           1223567899999 99999988  889999


Q ss_pred             eeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcc
Q psy988          321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHS  400 (408)
Q Consensus       321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  400 (408)
                      ||+.++            +.+..+. ....+.+++|+|                +|++|++++.++.|++||+.+++...
T Consensus       280 ~d~~~~------------~~~~~~~-~~~~~~~~~~s~----------------dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          280 YDLKQR------------KLIKAAN-LDHTYYCVAFDK----------------KGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EETTTT------------EEEEEEE-CSSCCCEEEECS----------------SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EECccC------------eEEEEEc-CCCCccceEECC----------------CCCEEEEecCCCeEEEEeccccceee
Confidence            999876            3333333 234578999999                88888888889999999999988776


Q ss_pred             cccc
Q psy988          401 SLPV  404 (408)
Q Consensus       401 ~~~~  404 (408)
                      .+++
T Consensus       331 ~~~~  334 (349)
T 1jmx_B          331 NIKL  334 (349)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            6654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.4e-25  Score=205.41  Aligned_cols=328  Identities=11%  Similarity=0.008  Sum_probs=209.9

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce---eeEEEEEecCCCEEEEEec---------CCEEEE
Q psy988           26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---LITAANFCENGKFAVVGSY---------DGRCIF   93 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~i   93 (408)
                      .+++|+| +++++++ +.|++|++||+.+++..  ..+.+|..   .+.+++|||||++|++++.         ++.|++
T Consensus        19 ~~~~~s~-dg~~~~~-~~d~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           19 FFPNWIS-GQEYLHQ-SADNNIVLYNIETGQSY--TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCCEESS-SSEEEEE-CTTSCEEEEESSSCCEE--EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CccEECC-CCeEEEE-cCCCCEEEEEcCCCcEE--EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            3689999 8865555 46999999999998865  34444433   3899999999999998876         789999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-Ccccc-----------
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNV-----------  161 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~-----------  161 (408)
                      ||+.+++....   ...      ...+..++|+|||+.|+++. ++.|++||+.+++...... ++...           
T Consensus        95 ~d~~~g~~~~~---~~l------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~  164 (719)
T 1z68_A           95 YDLSNGEFVRG---NEL------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE  164 (719)
T ss_dssp             EETTTTEECCS---SCC------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred             EECCCCccccc---eec------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence            99998764110   010      13688899999999999986 6899999998877644321 11110           


Q ss_pred             ----ccceEEEEecCCCEEEEeecCc----------------------------------eEEEeeeccceee-eeeccc
Q psy988          162 ----SSQIKASFSHDGKYIVSGSENQ----------------------------------CIYIWKTHHDYAK-FSSVRR  202 (408)
Q Consensus       162 ----~~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~-~~~~~~  202 (408)
                          .....++|+|||++|++++.|.                                  .|++||+.++... ....  
T Consensus       165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~--  242 (719)
T 1z68_A          165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV--  242 (719)
T ss_dssp             HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC--
T ss_pred             eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc--
Confidence                1113689999999999987652                                  6788888764321 0000  


Q ss_pred             CCCccccccccccceEEEEEEeCCcceeeeecCCCC---------------CCCceeee----cCCCceee-----eecc
Q psy988          203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK---------------SESTGYVL----NATGRKIS-----GIEP  258 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~----~~~~~~i~-----~~~~  258 (408)
                         .....+..+...+..++|+||++.++.......               ......+.    ..+...+.     .+.|
T Consensus       243 ---~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (719)
T 1z68_A          243 ---PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF  319 (719)
T ss_dssp             ---CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred             ---cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence               000224467888999999999876655322111               11111122    23445555     7899


Q ss_pred             CCCCCeEEE--ecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC-----ceEEEeeccccCcc
Q psy988          259 MPGEDKILV--TSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHDYAK  329 (408)
Q Consensus       259 ~~~~~~l~~--~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~  329 (408)
                      +|||+.++.  ...+|  .|.+||+.+++ ...+..+.  ..+..+.++ +++.|+..+.+     +.+++|.+......
T Consensus       320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~  395 (719)
T 1z68_A          320 SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYP  395 (719)
T ss_dssp             CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSS
T ss_pred             CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc--eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCC
Confidence            999997654  44444  57777877665 33443322  245566666 77777765544     78899988652100


Q ss_pred             ccccccCccccce-eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE-EecC--CeEEEEeCCCCCC
Q psy988          330 FSSVRRDRNDFWE-GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS-ADFN--GVIRVFLNKTKPK  398 (408)
Q Consensus       330 ~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~d--g~v~iw~~~~~~~  398 (408)
                      .      ....+. .+.+|...+..+.|+|                ++++++. ++.+  ..+.+|++.+++.
T Consensus       396 ~------~~~~l~~~~~~~~~~~~~~~~s~----------------dg~~l~~~~s~~~~p~~~l~d~~~g~~  446 (719)
T 1z68_A          396 P------SKKCVTCHLRKERCQYYTASFSD----------------YAKYYALVCYGPGIPISTLHDGRTDQE  446 (719)
T ss_dssp             C------CEEESSTTTTTTTBCBEEEEECG----------------GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred             C------CceeccCccCCCCCceEEEEECC----------------CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence            0      001111 1223566788899999                6766553 3333  4688888877664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=3e-23  Score=176.68  Aligned_cols=262  Identities=11%  Similarity=0.027  Sum_probs=173.6

Q ss_pred             CceEEEEeccCCeeEeEEEeCC--ceEEEEEcCCCCCEEE-EEeCCCcEEEEecCCCCceeeeeec-CC-----ceeeEE
Q psy988            2 DKTVRLWHISRKECLCCFQHID--FVTAICFHPRDDRYFL-SGSLDGKLRLWNIPDKKVAVWNEVE-GQ-----TKLITA   72 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~--~v~~~~~sp~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~-~~-----~~~v~~   72 (408)
                      |++|++||+.+++.+..+....  .+..++|+| ++++++ ++..++.|.+||+.+++...  .+. .+     ...+..
T Consensus        20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~--~~~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTF--HANLSSVPGEVGRSMYS   96 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE--EEESCCSTTEEEECSSC
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEE--EEEcccccccccccccc
Confidence            7899999999999998887545  789999999 887654 55568999999999887653  332 22     344788


Q ss_pred             EEEecCCCEEEEEecC------------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           73 ANFCENGKFAVVGSYD------------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      ++|+|+|++|++++.+            +.|.+||+.+++.........      +...+.+++|+|+++ +++++.  .
T Consensus        97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~-l~~~~~--~  167 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP------MPRQVYLMRAADDGS-LYVAGP--D  167 (349)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE------CCSSCCCEEECTTSC-EEEESS--S
T ss_pred             eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc------CCCcccceeECCCCc-EEEccC--c
Confidence            9999999999998865            899999998754322111111      123578899999999 666543  4


Q ss_pred             EEEEEccCcccceeecCccccc----------------------cceEEEEecCCCEEEEeecCc-eEEEeeeccceeee
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVS----------------------SQIKASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKF  197 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~  197 (408)
                      |.+||+.+++....+.......                      ....+++++++.......... .+..+|..++    
T Consensus       168 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----  243 (349)
T 1jmx_B          168 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG----  243 (349)
T ss_dssp             EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC----
T ss_pred             EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC----
Confidence            9999999888766554322000                      112233333321110000000 1111222211    


Q ss_pred             eecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecCCCeEEE
Q psy988          198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSNDSRIRL  276 (408)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i  276 (408)
                                         .+..+.+.                       .....+..++++| ++++++++  ++.|.+
T Consensus       244 -------------------~~~~~~~~-----------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~  279 (349)
T 1jmx_B          244 -------------------KTHTQEFA-----------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAK  279 (349)
T ss_dssp             -------------------CEEEEEEE-----------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred             -------------------cEEecccc-----------------------cCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence                               11111111                       1234566777888 88888887  889999


Q ss_pred             EEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          277 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ||+.+++....+....   .+..++|+|+|++|++++.++.|.+||+.++
T Consensus       280 ~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          280 YDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EECccCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            9999998887776432   4568999999999998888999999999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=4e-22  Score=170.39  Aligned_cols=295  Identities=12%  Similarity=0.102  Sum_probs=182.9

Q ss_pred             CCCEEEEEeC----CCcEEEEecC--CCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----CEEEEEeccCC--ee
Q psy988           34 DDRYFLSGSL----DGKLRLWNIP--DKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----GRCIFYTTDQL--KY  101 (408)
Q Consensus        34 ~~~~l~t~~~----dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~--~~  101 (408)
                      ...+++.|+.    ++.|.+|.++  +++.......  +...+..++|+|+|++|++++.+    +.+.+|+++..  +.
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            4456666643    5689999774  4555543333  66778889999999999999886    79999998763  32


Q ss_pred             eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecC---cc---------ccccceEEE
Q psy988          102 HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKG---YV---------NVSSQIKAS  168 (408)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~~---------~~~~~~~~~  168 (408)
                      .......      .+......+++  ++++|++++ .++.|.+|++.....+..+..   +.         ....+.+++
T Consensus        90 ~~~~~~~------~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           90 HLLNTQK------TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR  161 (361)
T ss_dssp             EEEEEEE------CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred             EEeeEec------cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence            2111111      12235667777  788887776 578999999975433322111   10         011235689


Q ss_pred             EecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          169 FSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       169 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      |+|+|+++++++ .++.|++|++........      ..   .+... ......                        ..
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~------~~---~l~~~-~~~~~~------------------------~~  207 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADN------KE---KFLTK-GTPEAF------------------------KV  207 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTT------CC---CCEEE-EEEEEE------------------------EC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCccc------cc---ceeec-ccccce------------------------ec
Confidence            999999776655 478999999864321000      00   00000 000000                        00


Q ss_pred             CCCceeeeeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeE--Eeec-cceeceeEEEEcCCCCEEEEecC--CceEEEe
Q psy988          248 ATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCK--YKGY-VNVSSQIKASFSHDGKYIVSGSE--NQCIYIW  321 (408)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw  321 (408)
                      .....+..++|+|+|+++++++ .++.|.+||+.+++....  +... .+......++|+|||++|+++..  ++.|.+|
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~  287 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF  287 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence            1223455677778887776665 689999999987765322  2221 11223568999999999877655  4899999


Q ss_pred             eccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCC--CCC
Q psy988          322 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNK--TKP  397 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~--~~~  397 (408)
                      ++......        ...+..+.. ...+.+++|+|                ||++|++++ .++.|.+|++.  +++
T Consensus       288 ~~~~~~g~--------~~~~~~~~~-g~~~~~~~~sp----------------dg~~l~~~~~~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          288 KVDETNGT--------LTKVGYQLT-GIHPRNFIITP----------------NGKYLLVACRDTNVIQIFERDQATGL  341 (361)
T ss_dssp             EECTTTCC--------EEEEEEEEC-SSCCCEEEECT----------------TSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEcCCCCc--------EEEeeEecC-CCCCceEEECC----------------CCCEEEEEECCCCCEEEEEEECCCCc
Confidence            99632110        012333333 45678999999                899888877 67999996554  554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=2.9e-23  Score=179.46  Aligned_cols=299  Identities=12%  Similarity=0.104  Sum_probs=191.3

Q ss_pred             EEeccCCeeEeEEE-eCCceEE-----EEEcCCCCCEEEEEeC-CCc--EEEEecCCCCceeeeeecCCceeeEEEEEec
Q psy988            7 LWHISRKECLCCFQ-HIDFVTA-----ICFHPRDDRYFLSGSL-DGK--LRLWNIPDKKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         7 vwd~~~~~~~~~~~-h~~~v~~-----~~~sp~~~~~l~t~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .+|..++..+..+. |......     .+|+| ||++|+.++. +|.  |.+||+.+++..  ....++...+..+.|+|
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEE--ECCCSSCBCSSSCEECT
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceE--EeeeCCCCCccceEEcC
Confidence            35777777777765 6655665     89999 9999998887 664  888898888765  34455555555678999


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE--EeeCCCCCeEEEe--------------------
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG--IEPMPGEDKILVT--------------------  135 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~--------------------  135 (408)
                      ||+.|+.++.++.|++||+.+++.......        +...+..  ..++|++..++..                    
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQV--------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY  162 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEEC--------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeec--------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence            999999999999999999998775443221        1122322  3348888887742                    


Q ss_pred             --eCCCeEEEEEccCcccceeecCccccccceEEEEec-CCCEEEEeecC------ceEEEeeeccceeeeeecccCCCc
Q psy988          136 --SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRND  206 (408)
Q Consensus       136 --~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~  206 (408)
                        ..+..|++||+.+++...... +.  ..+..+.|+| +|+.|+....+      ..|.++|......           
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~l~~-~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----------  228 (388)
T 3pe7_A          163 FTKPCCRLMRVDLKTGESTVILQ-EN--QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----------  228 (388)
T ss_dssp             GGCCCEEEEEEETTTCCEEEEEE-ES--SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----------
T ss_pred             ccCCcceEEEEECCCCceEEeec-CC--ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----------
Confidence              234689999999886544332 22  2356789999 99998877653      2677776643211           


Q ss_pred             ccccccccc--ceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-----CCeEEEEEc
Q psy988          207 FWEGIKAHN--AVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-----DSRIRLYDL  279 (408)
Q Consensus       207 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~  279 (408)
                        ..+..+.  ..+....|+|+|+.                                   |+..+.     +..|++||+
T Consensus       229 --~~l~~~~~~~~~~~~~~spdg~~-----------------------------------l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          229 --RKVKTHAEGESCTHEFWVPDGSA-----------------------------------LVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             --EESCCCCTTEEEEEEEECTTSSC-----------------------------------EEEEEEETTCCCEEEEEECT
T ss_pred             --EEeeeCCCCcccccceECCCCCE-----------------------------------EEEEecCCCCCcceEEEEec
Confidence              1111111  23444455555444                                   433221     224999999


Q ss_pred             CCCeeeeE--Eeeccce-eceeEEEEcCCCCEEEEe---------cCCceEEEeeccccCccccccccCccccceeeeee
Q psy988          280 RDLNLSCK--YKGYVNV-SSQIKASFSHDGKYIVSG---------SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  347 (408)
Q Consensus       280 ~~~~~~~~--~~~~~~~-~~v~~~~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h  347 (408)
                      .+++....  +..+.+. .......|+|||+.|+..         ..+..|++||+.++             .+..+..|
T Consensus       272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-------------~~~~l~~~  338 (388)
T 3pe7_A          272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG-------------TQHRVARH  338 (388)
T ss_dssp             TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-------------EEEEEEEC
T ss_pred             CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-------------ceEEeccc
Confidence            98875433  2221110 001124799999988854         45678999999875             22345555


Q ss_pred             cc-----------ceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCCCC
Q psy988          348 NA-----------VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNKTK  396 (408)
Q Consensus       348 ~~-----------~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~  396 (408)
                      ..           .+.+++|+|                ||+.|+.++ .+|...||.+.-.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~sp----------------Dg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTP----------------DDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECT----------------TSSEEEEEECTTSSCEEEEEECC
T ss_pred             cCcccccccccccCCCCccCCC----------------CCCEEEEEecCCCceeEEEEECC
Confidence            54           578899999                888777555 5787777766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=2.7e-22  Score=174.45  Aligned_cols=197  Identities=10%  Similarity=0.061  Sum_probs=136.5

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----------cee--eeeecCCceeeEEEEEecCCCEEE----E
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-----------VAV--WNEVEGQTKLITAANFCENGKFAV----V   84 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-----------~~~--~~~~~~~~~~v~~~~~~~~~~~l~----~   84 (408)
                      ...++.+++++ ++.++++++.|+ +++|+.....           ...  ......+...|.+++|+|+|++|+    +
T Consensus        36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            34689999999 888999999887 9998763210           000  001123456799999999999999    7


Q ss_pred             EecCCEEEEEeccCC-----eeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988           85 GSYDGRCIFYTTDQL-----KYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        85 ~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      ++.|+.|++||+.+.     +....  ........+|...|.+++|+|+ +..|++++.||.|++||++++........|
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~  191 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRP--FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS  191 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCC--SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred             cCCCceEEEEEccccccCCcCCcce--eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence            888999999998764     11000  0011122346679999999998 788999999999999999988655444444


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      .  ..+.+++|+|+|++|++|+.||.|++||.+ +.........     ......|...+.++.|++++.++
T Consensus       192 ~--~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~-----~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          192 T--VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP-----PFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             G--GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC-----TTCCTTSCEEEEEEEEEETTEEE
T ss_pred             C--CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC-----cccCCCCceeEEEEEEecCceEE
Confidence            3  458899999999999999999999999987 2211110000     00001233467777777765554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.92  E-value=1.4e-22  Score=172.12  Aligned_cols=292  Identities=10%  Similarity=0.098  Sum_probs=190.5

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC----------CCcEEEEecCCCCceeeeeecC----C
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL----------DGKLRLWNIPDKKVAVWNEVEG----Q   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~----~   66 (408)
                      |+.|.+||..+++.+..+. +..+  .++|+| ++++|+++..          ++.|.+||..+.+......+..    +
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            6799999999999988876 4444  899999 9999988863          6779999998877653222211    2


Q ss_pred             ceeeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEE
Q psy988           67 TKLITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRL  143 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i  143 (408)
                      ......++|+|+|++|+++..  ++.|.+||+.+.+....+    ...     .....+.+.|++ ..+++.+.||.+.+
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~----i~~-----~~~~~v~~~p~~~~~~~~~~~dg~~~~  177 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDV----TAA-----AGCWSVIPQPNRPRSFMTICGDGGLLT  177 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEE----GGG-----TTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEE----ecC-----CCcceeEEcCCCCeeEEEECCCCcEEE
Confidence            245677899999999999875  579999999988654320    110     112224566765 56777788999999


Q ss_pred             EEccC-ccccee------ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          144 YDLRD-LNLSCK------YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       144 ~d~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      |+... ++....      +.....   ...+.+++++..++..+.++.++++|+..+......          .+.....
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~----------~~~~~~~  244 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDD---PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG----------PWSLLND  244 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTS---CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE----------EEESCCH
T ss_pred             EEECCCCcEeeeccccceEcCCCC---ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc----------cccccCc
Confidence            99865 443311      111111   123445778877777778899999998643211100          0000000


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-----------CCeEEEEEcCCCeee
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-----------DSRIRLYDLRDLNLS  285 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~  285 (408)
                      ......|.|.+                         ...++++|+++.++++..           .+.|.+||+.+++.+
T Consensus       245 ~~~~~~~~p~g-------------------------~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v  299 (361)
T 2oiz_A          245 EDKAKNWVPGG-------------------------YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV  299 (361)
T ss_dssp             HHHHTTCEECC-------------------------SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred             cccccccccCC-------------------------eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence            00000000110                         111445666555555432           358999999999999


Q ss_pred             eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          286 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       286 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      ..+..+.    +..++|+|||++|++++. +.|.+||..++..          +.+..+..+......++++|
T Consensus       300 ~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l----------~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          300 ARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP----------KLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             EEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSC----------EEEEEETTSCSSEEEEEECC
T ss_pred             EEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc----------eeeEEeccCCCCcEEEEecC
Confidence            9888754    678999999999999887 9999999987511          23344444566678899999

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.92  E-value=5.9e-22  Score=169.31  Aligned_cols=280  Identities=8%  Similarity=0.062  Sum_probs=176.1

Q ss_pred             ceEEEEec--cCCeeEeEEE----eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC-CCCceeeeeecCCceeeEEEEE
Q psy988            3 KTVRLWHI--SRKECLCCFQ----HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP-DKKVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         3 g~i~vwd~--~~~~~~~~~~----h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~   75 (408)
                      +.|.+|++  .+++......    ....+..++|+| ++++|++++.+ .|.+|++. +++.........+ +.+..++|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~   90 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDA   90 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCT
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEE
Confidence            45777665  4665533222    334788999999 99999999887 99999997 6655422222211 22556889


Q ss_pred             ecCCCE--EEEEe-------------cCCEEEEEeccC-CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C
Q psy988           76 CENGKF--AVVGS-------------YDGRCIFYTTDQ-LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D  138 (408)
Q Consensus        76 ~~~~~~--l~~~~-------------~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d  138 (408)
                      +|+|++  ++++.             .+|.+.+|++.. ++.........    ..+...+.+++|+|++++++++.. +
T Consensus        91 spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~spdG~~l~~~~~~~  166 (365)
T 1jof_A           91 DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDPTETYLYSADLTA  166 (365)
T ss_dssp             TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE----eCCCCcceEEEECCCCCEEEEEcCCC
Confidence            999994  45553             689999999974 44332222111    112357899999999998888754 6


Q ss_pred             CeEEEEEcc-Ccccce--eecCccccccceEEEEecCCCEEEEeec-CceEEEeeecc--ceeeeeecccCCCccccccc
Q psy988          139 SRIRLYDLR-DLNLSC--KYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHH--DYAKFSSVRRDRNDFWEGIK  212 (408)
Q Consensus       139 g~i~i~d~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~  212 (408)
                      +.|++||+. +++...  .+....+...+..++|+|+|+++++++. ++.|.+|++..  +.....              
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~--------------  232 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT--------------  232 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc--------------
Confidence            799999998 665432  2221111234678999999999888765 68999998753  211000              


Q ss_pred             cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC------ceeeeec-cCCCCCeEEEecCC-C-----eEEEEEc
Q psy988          213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG------RKISGIE-PMPGEDKILVTSND-S-----RIRLYDL  279 (408)
Q Consensus       213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~-~~~~~~~l~~~~~d-~-----~i~i~d~  279 (408)
                           ...+...|.+                  ...+.      ..+..++ |+|||++|+++..+ +     .|.+|++
T Consensus       233 -----~~~~~~~~~~------------------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          233 -----HHSFPLIPPG------------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             -----EEEEESSCTT------------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             -----cceEEcCCCC------------------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence                 0000000000                  00001      1456677 77777777765432 2     8999999


Q ss_pred             C-CCeeeeEEe-eccceeceeEEEEcC---CCCEEEEecCC-ceEEEeecccc
Q psy988          280 R-DLNLSCKYK-GYVNVSSQIKASFSH---DGKYIVSGSEN-QCIYIWKTHHD  326 (408)
Q Consensus       280 ~-~~~~~~~~~-~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~iw~~~~~  326 (408)
                      . +++...... ..........++|+|   ||++|++++.+ +.|.+|++...
T Consensus       290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            6 566543211 111122345789999   89999998864 89999998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.8e-23  Score=193.89  Aligned_cols=308  Identities=11%  Similarity=0.026  Sum_probs=195.9

Q ss_pred             CceEEEEeccCCeeEeEEEeCC----ceEEEEEcCCCCCEEEEEeC---------CCcEEEEecCCCCceeeeeecCCce
Q psy988            2 DKTVRLWHISRKECLCCFQHID----FVTAICFHPRDDRYFLSGSL---------DGKLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~----~v~~~~~sp~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      |++|++||+.+++....+.+..    .|.+++||| ||++|++++.         ++.|++||+.+++......+   ..
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~  110 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PR  110 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CS
T ss_pred             CCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Cc
Confidence            7899999999999988887433    399999999 9999998876         78999999998876211122   24


Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc-ccccCC---------CCeEEEeeCCCCCeEEEeeCC
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR-GKNATG---------RKISGIEPMPGEDKILVTSND  138 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~---------~~v~~~~~~~~~~~l~~~~~d  138 (408)
                      .+..++|||||+.|+.+. ++.|++|++.+++........... ...++.         ....+++|+|||+.|++++.|
T Consensus       111 ~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          111 PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            588899999999999885 789999999887643211000000 000111         122589999999999998754


Q ss_pred             C----------------------------------eEEEEEccCcccc--eeecC----ccccccceEEEEecCCCEEEE
Q psy988          139 S----------------------------------RIRLYDLRDLNLS--CKYKG----YVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       139 g----------------------------------~i~i~d~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .                                  .|++||+.+++..  ..+..    ..+...+..++|+||++.+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~  269 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ  269 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence            2                                  7889999887653  11111    012234678999999877766


Q ss_pred             eecC----ceEEEee----eccceeeeeecccCCCcccccc----ccccceEE-----EEEEeCCcceeeee-cCCCC--
Q psy988          179 GSEN----QCIYIWK----THHDYAKFSSVRRDRNDFWEGI----KAHNAVVT-----CAVFAPCPELIIAQ-MEPDK--  238 (408)
Q Consensus       179 ~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~~~~-~~~~~--  238 (408)
                      ....    ..|.+||    ..++...            ..+    ..+...+.     .+.|+|+|+.++.. .....  
T Consensus       270 ~~~~~~~~~~l~~~d~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~  337 (719)
T 1z68_A          270 WLKRVQNVSVLSICDFREDWQTWDCP------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK  337 (719)
T ss_dssp             EEESSTTEEEEEEEEECSSSSSEECC------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred             EeccccCeEEEEEEcccCCCCCCceE------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence            4432    3588888    5543211            112    23444444     67899999977652 11111  


Q ss_pred             -------CCCceeeecCCCceeeeeccCCCCCeEEEecCC-----CeEEEEEcCC--Cee-eeEEeec-c-ceeceeEEE
Q psy988          239 -------SESTGYVLNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRD--LNL-SCKYKGY-V-NVSSQIKAS  301 (408)
Q Consensus       239 -------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~--~~~-~~~~~~~-~-~~~~v~~~~  301 (408)
                             .......+..+...+..+.++ +++.|+..+.+     +..++|.+..  +.. ...+... . +...+..+.
T Consensus       338 ~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~  416 (719)
T 1z68_A          338 HIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTAS  416 (719)
T ss_dssp             EEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEE
T ss_pred             EEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEE
Confidence                   111122233334456666666 77777766554     7888888754  321 2222210 0 122456789


Q ss_pred             EcCCCCEEEE-ecCC--ceEEEeeccccC
Q psy988          302 FSHDGKYIVS-GSEN--QCIYIWKTHHDY  327 (408)
Q Consensus       302 ~s~~~~~l~~-~~~d--g~i~iw~~~~~~  327 (408)
                      |+|++++++. ++..  ..+.+||+.++.
T Consensus       417 ~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          417 FSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             ECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             ECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            9999998774 3333  468899887654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=2.5e-21  Score=165.48  Aligned_cols=284  Identities=11%  Similarity=0.109  Sum_probs=175.8

Q ss_pred             EEEEEeCC--CcEEEEecC--CCCceeeeeec-CCceeeEEEEEecCCCEEEEEecCCEEEEEecc-CCeeeEEEEEeec
Q psy988           37 YFLSGSLD--GKLRLWNIP--DKKVAVWNEVE-GQTKLITAANFCENGKFAVVGSYDGRCIFYTTD-QLKYHTQIHVRST  110 (408)
Q Consensus        37 ~l~t~~~d--g~i~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~  110 (408)
                      +++.|+..  +.|.+|+++  +++........ .....+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-I   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-C
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-c
Confidence            45666653  568887763  45443222221 233467889999999999999888 99999997 65543221111 0


Q ss_pred             cccccCCCCeEEEeeCCCCCe--EEEee-------------CCCeEEEEEcc-CcccceeecC--ccccccceEEEEecC
Q psy988          111 RGKNATGRKISGIEPMPGEDK--ILVTS-------------NDSRIRLYDLR-DLNLSCKYKG--YVNVSSQIKASFSHD  172 (408)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~~--~~~~~~~~~~~~~~~  172 (408)
                           . +.+.+++|+|++++  ++++.             .++.+.+|++. +++....+..  +.....+..++|+|+
T Consensus        82 -----~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           82 -----G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             -----C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             -----C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence                 0 12456899999995  44543             68999999997 4554433321  112234678999999


Q ss_pred             CCEEEEeec-CceEEEeeec-cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          173 GKYIVSGSE-NQCIYIWKTH-HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       173 ~~~l~~~~~-dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      |++++++.. ++.|++||+. ++....                    +..+.+                       ..+.
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~--------------------~~~~~~-----------------------~~~g  192 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVEL--------------------VGSVDA-----------------------PDPG  192 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEE--------------------EEEEEC-----------------------SSTT
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEE--------------------eeeEec-----------------------CCCC
Confidence            998887754 6799999986 332110                    000000                       0112


Q ss_pred             ceeeeeccCCCCCeEEEec-CCCeEEEEEcC--CCeeee---EEeecc----cee-------ceeEEE-EcCCCCEEEEe
Q psy988          251 RKISGIEPMPGEDKILVTS-NDSRIRLYDLR--DLNLSC---KYKGYV----NVS-------SQIKAS-FSHDGKYIVSG  312 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~~~---~~~~~~----~~~-------~v~~~~-~s~~~~~l~~~  312 (408)
                      ..+..++|+|+|+++++++ .++.|.+|++.  +++...   .+....    ...       .+..++ |+|||++|+++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            3456667777777777665 47899999875  455432   222111    111       367899 99999998876


Q ss_pred             cCCc------eEEEeecc-ccCccccccccCccccce---eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE
Q psy988          313 SENQ------CIYIWKTH-HDYAKFSSVRRDRNDFWE---GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA  382 (408)
Q Consensus       313 ~~dg------~i~iw~~~-~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  382 (408)
                      +.+.      .|.+|++. ++            +...   ....+...+..++|+|..           |  ||++|+++
T Consensus       273 ~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~~~~~~~~a~sp~~-----------~--dg~~l~v~  327 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTPTSGGHSNAVSPCP-----------W--SDEWMAIT  327 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECSSCCTTCCCEEECT-----------T--CTTEEEEE
T ss_pred             CCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecCCCCcccceecCCC-----------c--CCCEEEEE
Confidence            5432      89999996 33            1111   122234456678888810           0  27788888


Q ss_pred             ec-CCeEEEEeCCCC
Q psy988          383 DF-NGVIRVFLNKTK  396 (408)
Q Consensus       383 ~~-dg~v~iw~~~~~  396 (408)
                      +. ++.|++|++...
T Consensus       328 ~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             EcCCCeEEEEEEchh
Confidence            76 489999998754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.7e-22  Score=174.51  Aligned_cols=211  Identities=12%  Similarity=0.084  Sum_probs=143.5

Q ss_pred             CeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc----------eeecC---ccccccceEEEEecCCCEEE----Eeec
Q psy988          119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS----------CKYKG---YVNVSSQIKASFSHDGKYIV----SGSE  181 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~l~----~~~~  181 (408)
                      .+..+++++++..+++++.++ +++|+.......          .....   ......+.+++|+|++++|+    +++.
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence            578899999999999998887 999886432110          00000   01123488999999999999    7888


Q ss_pred             CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC
Q psy988          182 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG  261 (408)
Q Consensus       182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (408)
                      |+.|++||+.+........ .........+.                                   .|...|.+++|+|+
T Consensus       117 d~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~-----------------------------------~h~~~V~~v~~~p~  160 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQ-KRPFAYHKLLK-----------------------------------DAGGMVIDMKWNPT  160 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSS-CCCSEEEECCC-----------------------------------SGGGSEEEEEECSS
T ss_pred             CceEEEEEccccccCCcCC-cceeeeeeccC-----------------------------------CCCCceEEEEECCC
Confidence            9999999986531000000 00000012222                                   34445555555665


Q ss_pred             -CCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988          262 -EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       262 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                       +.+|++++.||+|++||++++.......+|.  ..+.+++|+|+|++|++|+.||.|++||++ +.            .
T Consensus       161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~------------~  225 (434)
T 2oit_A          161 VPSMVAVCLADGSIAVLQVTETVKVCATLPST--VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ------------E  225 (434)
T ss_dssp             CTTEEEEEETTSCEEEEEESSSEEEEEEECGG--GCEEEEEECTTSSCEEEEETTSCEEEECTT-CC------------E
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcceeeccCCC--CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc------------c
Confidence             5678999999999999999987665555544  378999999999999999999999999987 21            1


Q ss_pred             ceeee-------eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE-ecCC------eEEEEeCCCCC
Q psy988          341 WEGIK-------AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA-DFNG------VIRVFLNKTKP  397 (408)
Q Consensus       341 ~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg------~v~iw~~~~~~  397 (408)
                      ...+.       .|...|.+++|++                ++.++++. ..||      .+++|++...+
T Consensus       226 ~~~~~~~~~~~~~~~~~v~~v~w~~----------------~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          226 KKVIPCPPFYESDHPVRVLDVLWIG----------------TYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEECCCTTCCTTSCEEEEEEEEEE----------------TTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             cccccCCcccCCCCceeEEEEEEec----------------CceEEEEEccCCCccCCCCceEEEEeccCC
Confidence            11111       2345899999999                77776543 3443      38999998754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=1.4e-21  Score=169.44  Aligned_cols=300  Identities=11%  Similarity=0.080  Sum_probs=184.6

Q ss_pred             EEeccCCeeEeEEE-eC-----CceEEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCceeeeeecCCcee-eEEEEEe
Q psy988            7 LWHISRKECLCCFQ-HI-----DFVTAICFHPRDDRYFLSGSLD---GKLRLWNIPDKKVAVWNEVEGQTKL-ITAANFC   76 (408)
Q Consensus         7 vwd~~~~~~~~~~~-h~-----~~v~~~~~sp~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~   76 (408)
                      ..|..+++.+..+. +.     ..+..++|+| +|++|+.....   ..|.+||+.+++..   .+..+... ...+.|+
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~s   89 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFIS   89 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEEC
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceEC
Confidence            34778887776664 32     3378899999 99988877543   36888898887654   23333333 3347899


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCe-------------EEEeeCCCCCeEEEe-----eCC
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI-------------SGIEPMPGEDKILVT-----SND  138 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~l~~~-----~~d  138 (408)
                      |+|++|+.++.++.|.+|++.+++.........  ........+             ..+.|+|+++.++..     ..+
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~  167 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT  167 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence            999999999999999999998876433222111  000000000             004678888877665     356


Q ss_pred             CeEEEEEccCcccceeecCccccccceEEEEec-CCCEEEEeecC------ceEEEeeeccceeeeeecccCCCcccccc
Q psy988          139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRNDFWEGI  211 (408)
Q Consensus       139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (408)
                      ..|++||+.+++......   ....+..+.|+| +++.|+..+.+      ..|.+||+..+..             ..+
T Consensus       168 ~~l~~~d~~~g~~~~~~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~l  231 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQ---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-------------RKI  231 (396)
T ss_dssp             EEEEEEETTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-------------EES
T ss_pred             ceEEEEECCCCcEEeecc---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-------------eEe
Confidence            789999998877554432   223366789999 78877766543      3577777643211             001


Q ss_pred             ccc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-----CeEEEEEcCCCee
Q psy988          212 KAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNL  284 (408)
Q Consensus       212 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~  284 (408)
                      ..+  ...+..+.|                                   +|+|++|+..+.+     +.|++||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~-----------------------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          232 KEHAEGESCTHEFW-----------------------------------IPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             SCCCTTEEEEEEEE-----------------------------------CTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             eccCCCccccceEE-----------------------------------CCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            111  122344444                                   5555544444322     4599999988875


Q ss_pred             eeEEeeccceeceeEEEEcC-CCCEEEEec----------------CCceEEEeeccccCccccccccCccccceeeeee
Q psy988          285 SCKYKGYVNVSSQIKASFSH-DGKYIVSGS----------------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH  347 (408)
Q Consensus       285 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h  347 (408)
                      ....... .   .. +.|+| ||+++++++                .++.|++||+.++.             ...+..+
T Consensus       277 ~~l~~~~-~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~  338 (396)
T 3c5m_A          277 EEVMVMP-P---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS-------------AQKLCKH  338 (396)
T ss_dssp             EEEEECC-S---EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB-------------CCEEEEC
T ss_pred             EEeeeCC-C---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc-------------eEEccCC
Confidence            4433221 1   22 78999 999888754                34789999988752             2234444


Q ss_pred             cc-----------ceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-CCeEEEEe--CCCCC
Q psy988          348 NA-----------VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-NGVIRVFL--NKTKP  397 (408)
Q Consensus       348 ~~-----------~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~v~iw~--~~~~~  397 (408)
                      ..           .+..++|+|                ||+.|+.++. ++...+|.  +.+++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~----------------dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTP----------------NDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECT----------------TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             CCccccccccccCCCCCceEcc----------------CCCeEEEEecCCCCceEEEEEEcccc
Confidence            43           256788999                8887776654 56555554  44444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=5.5e-21  Score=178.40  Aligned_cols=301  Identities=11%  Similarity=0.060  Sum_probs=183.1

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee-----eEEEEEecCCCEEEEEecC---------
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL-----ITAANFCENGKFAVVGSYD---------   88 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------   88 (408)
                      ....++.|+| ++++++++  |++|++||+.+++..  ..+.+|...     ...++|||||++|+.++.+         
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEE--EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCCceE--EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            4467899999 89988886  899999999999865  445555432     2447899999999998876         


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec-Ccccc------
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK-GYVNV------  161 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~------  161 (408)
                      +.+.+||+.+++...         ...+...+...+|+|||+.|+.+. ++.|++||+.+++..+... +....      
T Consensus        92 ~~~~~~d~~~~~~~~---------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~  161 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT---------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (740)
T ss_dssp             EEEEEEETTTTEECC---------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             eEEEEEECCCCcEEE---------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence            567799999876421         122345789999999999999885 5899999998877543221 11110      


Q ss_pred             ---------ccceEEEEecCCCEEEEeecCc------------------------------------eEEEeeecc---c
Q psy988          162 ---------SSQIKASFSHDGKYIVSGSENQ------------------------------------CIYIWKTHH---D  193 (408)
Q Consensus       162 ---------~~~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~  193 (408)
                               .....+.|||||++|+.++.|.                                    .|++||+.+   +
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred             cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence                     1123478999999999876433                                    244444443   2


Q ss_pred             eeeeeecccCCCcccccc------ccccceEEEEEEeCCcceeeeecCCCCCCCceee-------------------ecC
Q psy988          194 YAKFSSVRRDRNDFWEGI------KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV-------------------LNA  248 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  248 (408)
                      ...          ....+      .++...+..++|+|||+.++.............+                   ...
T Consensus       242 ~~~----------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~  311 (740)
T 4a5s_A          242 TNA----------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS  311 (740)
T ss_dssp             SCC----------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred             Ccc----------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence            100          01111      1367789999999999966654332211111111                   123


Q ss_pred             CCceee-----eeccCCCCCeEE-Eec-CC--CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecC----
Q psy988          249 TGRKIS-----GIEPMPGEDKIL-VTS-ND--SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSE----  314 (408)
Q Consensus       249 ~~~~i~-----~~~~~~~~~~l~-~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~----  314 (408)
                      +...+.     .+.|+|||+.|+ ..+ .+  ..|++||+.+++......+.   ..+..+. .+|++.|+ +++.    
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~---~~v~~~~-~~d~~~i~f~~~~~~~~  387 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT---WEVIGIE-ALTSDYLYYISNEYKGM  387 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS---SCEEEEE-EECSSEEEEEESCGGGC
T ss_pred             CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC---EEEEEEE-EEeCCEEEEEEecCCCC
Confidence            343333     788999999877 554 33  46888998876654433332   1333332 24466555 4443    


Q ss_pred             CceEEEeeccccCccccccccCccccce-eeeeeccceEEEEecCC
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWE-GIKAHNAVVTCAVFAPC  359 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~  359 (408)
                      .+...||.+.......       ...+. .+.+....+..+.|+|+
T Consensus       388 ~~~~~ly~v~~~g~~~-------~~~lt~~~~~~~~~~~~~~~S~d  426 (740)
T 4a5s_A          388 PGGRNLYKIQLIDYTK-------VTCLSCELNPERCQYYSVSFSKE  426 (740)
T ss_dssp             TTCBEEEEEETTEEEE-------EEESSTTTSTTTBCBEEEEECTT
T ss_pred             CceeEEEEEECCCCCc-------ceeeccccCCCCCceEEEEECCC
Confidence            2344555543321000       00111 01122356788999993

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=7.8e-22  Score=179.49  Aligned_cols=233  Identities=13%  Similarity=0.043  Sum_probs=158.1

Q ss_pred             ceeeEEEEEecCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEE
Q psy988           67 TKLITAANFCENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIR  142 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~  142 (408)
                      ..+|.+++|+|||++|++++. ||++.||++++++...      ..  ..+...+..+.|+|+ +.+++++.   +....
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~------lt--~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK------LN--REPINSVLDPHYGVG-RVILVRDVSKGAEQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE------CC--SSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe------ee--cccccccccccCCCC-eEEEEeccCCCCcceE
Confidence            557999999999999999887 9999999986654321      11  112247889999998 66666654   45566


Q ss_pred             EEEccC--cccceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          143 LYDLRD--LNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       143 i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +|.+..  ......+.....   ....+|+|+++. +++...++.+.+||+.++....             +..+..  .
T Consensus        92 l~~~~~~~~g~~~~l~~~~~---~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-------------l~~~~~--~  153 (582)
T 3o4h_A           92 LFKVNTSRPGEEQRLEAVKP---MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-------------LARLPG--F  153 (582)
T ss_dssp             EEEEETTSTTCCEECTTSCS---BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-------------EEEESS--C
T ss_pred             EEEEeccCCCccccccCCCC---ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-------------eecCCC--c
Confidence            665543  222223322222   234678888864 3333444556699987643211             111111  3


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC----CeEEEEEcCCCeeeeEEeecccee
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND----SRIRLYDLRDLNLSCKYKGYVNVS  295 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~  295 (408)
                                                         +++|+|||++|++++.+    +.|++||+.+++.. .+..+..  
T Consensus       154 -----------------------------------~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~--  195 (582)
T 3o4h_A          154 -----------------------------------GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG--  195 (582)
T ss_dssp             -----------------------------------EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC--
T ss_pred             -----------------------------------eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC--
Confidence                                               34455556666665555    78999999988765 4554433  


Q ss_pred             ceeEEEEcCCCCEEEEecCCc--eEEEeeccccCccccccccCccccceeeeeeccceEEEE--------ecCCchhhhh
Q psy988          296 SQIKASFSHDGKYIVSGSENQ--CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV--------FAPCPELIIA  365 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~  365 (408)
                      .+..++|||||++|+++..++  .|++||+.++.            .. .+.+|...+..++        |+|       
T Consensus       196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~sp-------  255 (582)
T 3o4h_A          196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGS------------VE-DLELPSKDFSSYRPTAITWLGYLP-------  255 (582)
T ss_dssp             EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC------------EE-ECCCSCSHHHHHCCSEEEEEEECT-------
T ss_pred             ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc------------EE-EccCCCcChhhhhhccccceeEcC-------
Confidence            568899999999999888888  89999998762            22 4556666666666        999       


Q ss_pred             ccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          366 QMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       366 ~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                               ||.++++++.||.+++|++
T Consensus       256 ---------dg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          256 ---------DGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ---------TSCEEEEEEETTEEEEEET
T ss_pred             ---------CCcEEEEEEcCCcEEEEEE
Confidence                     8899999999999999999

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=1.9e-21  Score=164.60  Aligned_cols=226  Identities=8%  Similarity=0.015  Sum_probs=163.3

Q ss_pred             CceEEEEeccCCeeEeEEEeCC------ceEEEEEcCCCCCEEEEEe------------CCCcEEEEecCCCCceeeeee
Q psy988            2 DKTVRLWHISRKECLCCFQHID------FVTAICFHPRDDRYFLSGS------------LDGKLRLWNIPDKKVAVWNEV   63 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~------~v~~~~~sp~~~~~l~t~~------------~dg~i~iw~~~~~~~~~~~~~   63 (408)
                      ++.|.+||+.+++.+..+....      .+.+++|+| ++++|++++            .++.|.+||+.+++..  ..+
T Consensus        55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~  131 (337)
T 1pby_B           55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--KAF  131 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--EEE
T ss_pred             CCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE--EEE
Confidence            6789999999999888776433      788999999 998888886            5799999999887655  333


Q ss_pred             cCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-C---
Q psy988           64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-S---  139 (408)
Q Consensus        64 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g---  139 (408)
                      .. ...+.+++|+|+|++|+++  ++.|.+||+.+++.........         ....+.|+|++..+++.+.. +   
T Consensus       132 ~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~~~  199 (337)
T 1pby_B          132 EA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS---------WEAETYAQPDVLAVWNQHESSGVMA  199 (337)
T ss_dssp             EC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT---------TTTTTBCCCBCCCCCCCCTTTTEEE
T ss_pred             eC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc---------cCCCceeCCCccEEeeeccCCCcee
Confidence            32 3457888999999988887  6889999999887543332110         01123788988877665432 2   


Q ss_pred             --------------------eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeee
Q psy988          140 --------------------RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  199 (408)
Q Consensus       140 --------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  199 (408)
                                          .|.+||+.+++.. .+........+..++|+|++++++++  ++.|++||+.++..... 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~-  275 (337)
T 1pby_B          200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-  275 (337)
T ss_dssp             EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-
T ss_pred             eeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce-
Confidence                                4689999988765 33222233346679999999999988  68999999865422110 


Q ss_pred             cccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEc
Q psy988          200 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL  279 (408)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  279 (408)
                                 +.                                    ....+.+++|+|++++|++++.++.|.+||+
T Consensus       276 -----------~~------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          276 -----------VP------------------------------------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             -----------EE------------------------------------CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             -----------ec------------------------------------CCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence                       00                                    1123456677778888888888999999999


Q ss_pred             CCCeeeeEEeeccc
Q psy988          280 RDLNLSCKYKGYVN  293 (408)
Q Consensus       280 ~~~~~~~~~~~~~~  293 (408)
                      .+++.+..+.....
T Consensus       309 ~~~~~~~~~~~~~~  322 (337)
T 1pby_B          309 ETLEKKGQVDLPGN  322 (337)
T ss_dssp             TTCCEEEEEECGGG
T ss_pred             cCCcEEEEEEcCCC
Confidence            99998888776533

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.88  E-value=1.6e-18  Score=154.37  Aligned_cols=334  Identities=13%  Similarity=0.125  Sum_probs=219.4

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecC--CCCceeeeeecCCceeeEEEEEe---
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP--DKKVAVWNEVEGQTKLITAANFC---   76 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~---   76 (408)
                      |++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+.  +.+..  ..+.... ....++|+   
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~G~-~P~~ia~s~~~  251 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGS-EARSIETSKME  251 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCS-EEEEEEECCST
T ss_pred             CCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEe--EEEecCC-CCceeEEcccc
Confidence            6899999999999999998777788999999 99999999999999999995  55544  4554433 35789999   


Q ss_pred             -cCCCEEEEEecC-CEEEEEeccCCeeeEEEEEeeccc--cccC-CCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcc
Q psy988           77 -ENGKFAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRG--KNAT-GRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLN  150 (408)
Q Consensus        77 -~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~  150 (408)
                       |||+++++++.. +.+.++|..+.+....+.......  ...| ...+..+..++++..+++. ...|.|.++|..+.+
T Consensus       252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~  331 (567)
T 1qks_A          252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  331 (567)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence             699998877654 899999999988776655432111  0011 2267788888887766555 557999999987654


Q ss_pred             cceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      ....... ........+.|+|++++++++. .++.|.++|+.+++.......       .....|...-.. .+      
T Consensus       332 ~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v-------gg~~Phpg~g~~-~~------  396 (567)
T 1qks_A          332 NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT-------GGQTPHPGRGAN-FV------  396 (567)
T ss_dssp             EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-------SSSSBCCTTCEE-EE------
T ss_pred             cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-------cCcCCCCcccee-eE------
Confidence            3222111 1112244678999999987765 577999999986543221100       000011110000 12      


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCC-eEEEec-CCCeEEEEEcCC-------CeeeeEEeeccceeceeEE
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGED-KILVTS-NDSRIRLYDLRD-------LNLSCKYKGYVNVSSQIKA  300 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~  300 (408)
                                                   +|++. .++++. .++.|.++|..+       .+.+.++.....  .-..+
T Consensus       397 -----------------------------~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i  445 (567)
T 1qks_A          397 -----------------------------HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFI  445 (567)
T ss_dssp             -----------------------------ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred             -----------------------------CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEE
Confidence                                         34322 234443 568999999987       567777765432  22346


Q ss_pred             EEcCCCCEEEEecC-------CceEEEeecccc-----CccccccccCccccceeeeeeccceEEEEecCCchhhhhccC
Q psy988          301 SFSHDGKYIVSGSE-------NQCIYIWKTHHD-----YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       301 ~~s~~~~~l~~~~~-------dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                      ..+|++++|.+...       .+.|.++|+.+.     ...+..+..   ..+..+..-...+..+.|+|          
T Consensus       446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------  512 (567)
T 1qks_A          446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI---AEWAGITEGQPRVVQGEFNK----------  512 (567)
T ss_dssp             ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH---HHHHTCCSSCCEEEEEEECT----------
T ss_pred             EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc---ccccccCCCCcceEeeeECC----------
Confidence            88999999998653       359999999875     110000000   00001111235688999999          


Q ss_pred             CCCCCCcccEEEEEe-----cCCeEEEEeCCCCCCcccccc
Q psy988          369 PDKSESTGYVLVSAD-----FNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       369 ~~~~s~~~~~l~s~~-----~dg~v~iw~~~~~~~~~~~~~  404 (408)
                            +|+.+..+.     .++.|.|+|.++++....++.
T Consensus       513 ------~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          513 ------DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             ------TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             ------CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence                  777665543     379999999999988777663

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.88  E-value=1.9e-19  Score=152.95  Aligned_cols=287  Identities=9%  Similarity=0.032  Sum_probs=192.6

Q ss_pred             CCCEEEEEe------CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----------CCEEEEEecc
Q psy988           34 DDRYFLSGS------LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----------DGRCIFYTTD   97 (408)
Q Consensus        34 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~   97 (408)
                      +++++++..      .|+.|.+||..+++..  ..+..+..+  .++|+|+|+++++++.          ++.|.+||..
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~   89 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL--GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD   89 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEE--EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEE--EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence            556666653      3789999999988865  466666555  8999999999999873          6789999999


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee-ecCccccccceEEEEecCC-
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDG-  173 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  173 (408)
                      +.+....+....  ....+......++++|++++|+++..  ++.|.+||+.+++.+.. +....    ...+.+.|++ 
T Consensus        90 t~~~~~~i~~~~--~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~  163 (361)
T 2oiz_A           90 KLTFEKEISLPP--KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRP  163 (361)
T ss_dssp             TCCEEEEEEECT--TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSS
T ss_pred             CCcEEEEEEcCc--cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCC
Confidence            887766654421  11112345678999999999999864  58999999999887665 43211    1124566765 


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      ..+++.+.||.+.+|+...........             +.    ...|.+.                       . ..
T Consensus       164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~-------------~~----~~~~~~~-----------------------~-~~  202 (361)
T 2oiz_A          164 RSFMTICGDGGLLTINLGEDGKVASQS-------------RS----KQMFSVK-----------------------D-DP  202 (361)
T ss_dssp             SEEEEEETTSSEEEEEECTTSSEEEEE-------------EC----CCCSCTT-----------------------T-SC
T ss_pred             eeEEEECCCCcEEEEEECCCCcEeeec-------------cc----cceEcCC-----------------------C-Cc
Confidence            667888889999999875421110000             00    0001110                       0 11


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeee--eEEeecc--------ceeceeEEEEcCCCCEEEEecC---------
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKGYV--------NVSSQIKASFSHDGKYIVSGSE---------  314 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~---------  314 (408)
                      ..+.+++++..++..+.++.+.++|+......  ..+....        .......++|+|+++.++++..         
T Consensus       203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence            12334556666777778899999998755422  2221100        0111113689999888877543         


Q ss_pred             --CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          315 --NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       315 --dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                        .+.|.+||+.+.            +.+..+..+.  +.+++|+|                ||++|++++. +.|.+||
T Consensus       283 ~~~~~v~viD~~t~------------~~v~~i~~~~--p~~ia~sp----------------dg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          283 FPAAEIWVMDTKTK------------QRVARIPGRD--ALSMTIDQ----------------QRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             CCCSEEEEEETTTT------------EEEEEEECTT--CCEEEEET----------------TTTEEEEECS-SCEEEEE
T ss_pred             CCCceEEEEECCCC------------cEEEEEecCC--eeEEEECC----------------CCCEEEEeCC-CeEEEEE
Confidence              358999999886            5677777666  89999999                8999998886 9999999


Q ss_pred             CCCC--CCcccc
Q psy988          393 NKTK--PKHSSL  402 (408)
Q Consensus       393 ~~~~--~~~~~~  402 (408)
                      ..++  +....+
T Consensus       332 ~~t~~l~~~~~i  343 (361)
T 2oiz_A          332 ISQPEPKLLRTI  343 (361)
T ss_dssp             CSSSSCEEEEEE
T ss_pred             CCCCcceeeEEe
Confidence            9999  766554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=1.5e-19  Score=168.82  Aligned_cols=312  Identities=8%  Similarity=0.055  Sum_probs=186.5

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCc-----eEEEEEcCCCCCEEEEEeCC---------CcEEEEecCCCCceeeeeecCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDF-----VTAICFHPRDDRYFLSGSLD---------GKLRLWNIPDKKVAVWNEVEGQ   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~-----v~~~~~sp~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~   66 (408)
                      ||+|++||+.++++...+. |...     ...+.||| ||++|+.++.+         +.+.+||+.+++..   .+..|
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---~l~~~  110 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERI  110 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCC
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---EcccC
Confidence            6899999999999888776 4432     24478999 99999998876         56779999998764   46667


Q ss_pred             ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc--cccCC---------CCeEEEeeCCCCCeEEEe
Q psy988           67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG--KNATG---------RKISGIEPMPGEDKILVT  135 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~---------~~v~~~~~~~~~~~l~~~  135 (408)
                      ...+...+|||||+.||.+ .++.|++|++.+++..... ......  ..++.         +....+.|+|||+.|+.+
T Consensus       111 ~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          111 PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            7789999999999999988 5789999999877642211 000000  00000         123458999999999987


Q ss_pred             eCCC------------------------------------eEEEEEccC---cc--cceeecCc----cccccceEEEEe
Q psy988          136 SNDS------------------------------------RIRLYDLRD---LN--LSCKYKGY----VNVSSQIKASFS  170 (408)
Q Consensus       136 ~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~~----~~~~~~~~~~~~  170 (408)
                      +.|.                                    .|++||+.+   ++  ....+...    .....+..++|+
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            4221                                    578899887   63  12223221    123446789999


Q ss_pred             cCCCEEEEeec----CceEEEeeeccceeeeeecccCCCcccccc--ccccceE-----EEEEEeCCcceee-eecCCCC
Q psy988          171 HDGKYIVSGSE----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGI--KAHNAVV-----TCAVFAPCPELII-AQMEPDK  238 (408)
Q Consensus       171 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v-----~~~~~~~~~~~~~-~~~~~~~  238 (408)
                      |||+.++....    +..|++||+.++......      .....+  ..+...+     ....|+|||+.++ .......
T Consensus       269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~------~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G  342 (740)
T 4a5s_A          269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNC------LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG  342 (740)
T ss_dssp             ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE------CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred             CCCeEEEEEeCCCCCEEEEEEEECCCCccccce------eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence            99997665533    347999999875410000      000111  2222222     2578999999877 4332221


Q ss_pred             ---------CCCceeeecCCCceeeeeccCCCCCeEEE-ecC----CC--eEEEEEcCCCeeeeEEeec--cceeceeEE
Q psy988          239 ---------SESTGYVLNATGRKISGIEPMPGEDKILV-TSN----DS--RIRLYDLRDLNLSCKYKGY--VNVSSQIKA  300 (408)
Q Consensus       239 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~----d~--~i~i~d~~~~~~~~~~~~~--~~~~~v~~~  300 (408)
                               .......+......+..+.. ++++.|+. +..    .+  .|...++..++....+...  ........+
T Consensus       343 ~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~  421 (740)
T 4a5s_A          343 YRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSV  421 (740)
T ss_dssp             CEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEE
T ss_pred             ceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEE
Confidence                     11111122222333444332 34555554 443    23  4444455443332223211  012356688


Q ss_pred             EEcCCCCEEEEecCC---ceEEEeecccc
Q psy988          301 SFSHDGKYIVSGSEN---QCIYIWKTHHD  326 (408)
Q Consensus       301 ~~s~~~~~l~~~~~d---g~i~iw~~~~~  326 (408)
                      .|||++++++.....   ..+.+++..++
T Consensus       422 ~~S~dg~~~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          422 SFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             EECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             EECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence            999999987654322   46777777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=3.2e-19  Score=164.97  Aligned_cols=295  Identities=10%  Similarity=-0.010  Sum_probs=182.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEE--eCCCcEEEEecCCCCceeeeeecCCceeeE---------EEEEe--cCCCE-EEEEe
Q psy988           21 HIDFVTAICFHPRDDRYFLSG--SLDGKLRLWNIPDKKVAVWNEVEGQTKLIT---------AANFC--ENGKF-AVVGS   86 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~   86 (408)
                      |...+..++|++ +.-++++.  +.++...||....+...  ..+..+...+.         ...|+  |||+. |+.++
T Consensus        22 ~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           22 RSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAE--ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             TCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCE--EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             cCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCc--ceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            888999999998 77666666  55788999996444332  45666665655         56666  99998 77655


Q ss_pred             c-CCEEEEEecc--C-CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----------CeEEEEEccC----
Q psy988           87 Y-DGRCIFYTTD--Q-LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----------SRIRLYDLRD----  148 (408)
Q Consensus        87 ~-dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~----  148 (408)
                      . +..|.++++.  + ++. ..+.  . .....+...+..++|+|||+.|++++.+          ..|++||+.+    
T Consensus        99 ~~~~~l~~~~~~~~g~~~~-~~l~--~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVP-RPLT--P-VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCC-EECS--C-CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             CCCCeEEEEcCCCCCCCCC-Eecc--C-CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            4 4567777765  2 321 1111  0 0000134568899999999999998876          5899999987    


Q ss_pred             --cccceeec-CccccccceEEEEecCCCEEEEeecC--------ceEEEeeec-cceeeeeecccCCCccccccccccc
Q psy988          149 --LNLSCKYK-GYVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTH-HDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       149 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                        ++.. .+. .+.  ..+..++|+|||++|+.++.+        ..|++||+. ++...         ........+..
T Consensus       175 ~~~~~~-~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---------~~~~l~~~~~~  242 (662)
T 3azo_A          175 DRSAVR-ELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---------DTRTLLGGPEE  242 (662)
T ss_dssp             CGGGSE-ESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---------EEEEEEEETTB
T ss_pred             cCCcee-EEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---------ccEEeCCCCCc
Confidence              5543 333 222  235568899999999987755        379999986 33100         00000111123


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC--eEEEEEcCCCeeeeEEeeccce
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYKGYVNV  294 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~  294 (408)
                                                         .+..+.|+|||++++++..++  .|.+||+.+++.......+...
T Consensus       243 -----------------------------------~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          243 -----------------------------------AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             -----------------------------------CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             -----------------------------------eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence                                               344455566666566777777  6777777666654333322111


Q ss_pred             e------ceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEE-EecCCchhhhhcc
Q psy988          295 S------SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA-VFAPCPELIIAQM  367 (408)
Q Consensus       295 ~------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~  367 (408)
                      .      .+..++|+|+++++++++. +.++||.++...           ..+..+..|...+..+ ++++         
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~-----------~~~~~l~~~~~~~~~~~s~~~---------  346 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES-----------GELVDAAGPWTEWAATLTVSG---------  346 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT-----------TEEEECCSSCCEEEEEEEEET---------
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC-----------CcEEEecCCCCeEEEEEecCC---------
Confidence            0      1456889999999999998 999999554211           1244556667777776 5544         


Q ss_pred             CCCCCCCcccEEEEEecCCe--EEEEeCCCCC
Q psy988          368 EPDKSESTGYVLVSADFNGV--IRVFLNKTKP  397 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~--v~iw~~~~~~  397 (408)
                             +.-++++++.+..  |.+|++.+++
T Consensus       347 -------~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          347 -------TRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             -------TEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -------CEEEEEEcCCCCCCEEEEEECCCCc
Confidence                   4444555565654  5555655554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=4.8e-18  Score=140.12  Aligned_cols=251  Identities=9%  Similarity=0.149  Sum_probs=168.9

Q ss_pred             CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC-CCCCeEEEeeC-CCeEE
Q psy988           65 GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM-PGEDKILVTSN-DSRIR  142 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~  142 (408)
                      ++-..+.+++++++++++++...++.|.+||.+. +......  .......+...+..+++. +++..+++... ++.|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~--~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFG--ECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEEC--CBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEec--ccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            4556789999999999888888899999999874 3322221  111112233468899994 56655555433 78999


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      +|| .+++....+... ....+..++++++|+.+++...++.|++||......             ..+..         
T Consensus       104 ~~d-~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-------------~~~~~---------  159 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-------------HKFGC---------  159 (286)
T ss_dssp             EEC-TTSCEEEEECTT-TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-------------EEEEC---------
T ss_pred             EEC-CCCcEEEEecCc-cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE-------------EEeCC---------
Confidence            999 556655555322 223467899999998777777788999998642110             00000         


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF  302 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  302 (408)
                                              ......+..++++|+++.+++...++.|++||.. ++.+..+........+..+++
T Consensus       160 ------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~  214 (286)
T 1q7f_A          160 ------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGI  214 (286)
T ss_dssp             ------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEE
T ss_pred             ------------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEE
Confidence                                    0111235566677777767777788999999974 555566654322245778999


Q ss_pred             cCCCCEEEEecCCc-eEEEeeccccCccccccccCccccceeeeeec--cceEEEEecCCchhhhhccCCCCCCCcccEE
Q psy988          303 SHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN--AVVTCAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       303 s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      +|+|+++++...++ .|.+|+...             +.+..+..+.  ..+.+++++|                +|+++
T Consensus       215 d~~G~l~v~~~~~~~~i~~~~~~g-------------~~~~~~~~~~~~~~~~~i~~~~----------------~g~l~  265 (286)
T 1q7f_A          215 NSNGEILIADNHNNFNLTIFTQDG-------------QLISALESKVKHAQCFDVALMD----------------DGSVV  265 (286)
T ss_dssp             CTTCCEEEEECSSSCEEEEECTTS-------------CEEEEEEESSCCSCEEEEEEET----------------TTEEE
T ss_pred             CCCCCEEEEeCCCCEEEEEECCCC-------------CEEEEEcccCCCCcceeEEECC----------------CCcEE
Confidence            99999988888776 999999653             2334444333  2477999999                89888


Q ss_pred             EEEecCCeEEEEeCCCCC
Q psy988          380 VSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       380 ~s~~~dg~v~iw~~~~~~  397 (408)
                      ++ +.|++|++|++....
T Consensus       266 vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          266 LA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EE-ETTTEEEEEECSCCC
T ss_pred             EE-CCCCeEEEEEccccc
Confidence            77 579999999987644

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=6.1e-19  Score=152.28  Aligned_cols=272  Identities=11%  Similarity=0.017  Sum_probs=168.8

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEE--EEecCCC
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAA--NFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~   80 (408)
                      .|.+||+.+++...... |...+..+.|+| +++.|+.++.++.|++||+.+++...  ....+...+...  .++|+++
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~dg~  137 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENV--VYQVPAEWVGYGTWVANSDCT  137 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEECTTSS
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCccee--eeechhhcccccceeECCCCC
Confidence            48889999999887776 545555789999 99999999999999999999988663  333344444333  3489999


Q ss_pred             EEEEE----------------------ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeC
Q psy988           81 FAVVG----------------------SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSN  137 (408)
Q Consensus        81 ~l~~~----------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  137 (408)
                      +++..                      ..+..|.+||+.+++......         +...+..+.|+| +++.|+.+..
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~~~~~~~~~~sp~dg~~l~~~~~  208 (388)
T 3pe7_A          138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---------ENQWLGHPIYRPYDDSTVAFCHE  208 (388)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---------ESSCEEEEEEETTEEEEEEEEEC
T ss_pred             eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---------CCccccccEECCCCCCEEEEEEe
Confidence            88743                      234689999998876433221         123688999999 9999888765


Q ss_pred             C------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-Cc----eEEEeeeccceeeeeecccCCCc
Q psy988          138 D------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ----CIYIWKTHHDYAKFSSVRRDRND  206 (408)
Q Consensus       138 d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~  206 (408)
                      +      ..|.++|+..++.. .+..+.....+....|+|||+.|+..+. ++    .|++||+.++.....        
T Consensus       209 ~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--------  279 (388)
T 3pe7_A          209 GPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL--------  279 (388)
T ss_dssp             SCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE--------
T ss_pred             cCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE--------
Confidence            3      37888887765443 3333222123557889999998866543 22    499999976542211        


Q ss_pred             cccccccccce---EEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe
Q psy988          207 FWEGIKAHNAV---VTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  283 (408)
Q Consensus       207 ~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  283 (408)
                        ..+..+...   .....|+|+|+.+++....                         + .-.....+..|++||+.+++
T Consensus       280 --~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------------------------~-~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          280 --TSMPACSHLMSNYDGSLMVGDGSDAPVDVQD-------------------------D-SGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             --EEECCEEEEEECTTSSEEEEEECCC--------------------------------------CCCCEEEEEETTTTE
T ss_pred             --EcCCCceeeeecCCCCeEccCCCcceeEeee-------------------------c-cccccCCCCEEEEEeccCCc
Confidence              001110000   0001344544444211000                         0 00011456789999999877


Q ss_pred             eeeEEeeccc-ee--------ceeEEEEcCCCCEEEEec-CCceEEEeeccc
Q psy988          284 LSCKYKGYVN-VS--------SQIKASFSHDGKYIVSGS-ENQCIYIWKTHH  325 (408)
Q Consensus       284 ~~~~~~~~~~-~~--------~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~  325 (408)
                      ... +..+.. ..        .+..++|+|||+.|+..+ .+|...||.++-
T Consensus       332 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          332 QHR-VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EEE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             eEE-eccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            643 333322 00        356789999999888655 467767776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=4.1e-18  Score=140.55  Aligned_cols=245  Identities=10%  Similarity=0.195  Sum_probs=168.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec------CCceeeEEEEEe-cCCCEEEEEec-CCEEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE------GQTKLITAANFC-ENGKFAVVGSY-DGRCI   92 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~   92 (408)
                      +-..+.+++++| +++++++...++.|.+||.+. +..  ..+.      ++...+..+++. +++.++++... ++.|.
T Consensus        28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g-~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             ccCCCceEEECC-CCCEEEEECCCCEEEEECCCC-cEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            346789999999 889888888899999999874 333  2222      344578899994 67776666543 88999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +|+. +++......       ......+.+++++|+++.+++...++.|.+||.. ++....+........+..++++++
T Consensus       104 ~~d~-~g~~~~~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~  174 (286)
T 1q7f_A          104 IYNQ-YGQFVRKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK  174 (286)
T ss_dssp             EECT-TSCEEEEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred             EECC-CCcEEEEec-------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC
Confidence            9994 444332221       1122468899999999877776778899999964 454444432222234678999999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      |+.+++...++.|++||.....             +..+...                                 .....
T Consensus       175 g~l~v~~~~~~~i~~~~~~g~~-------------~~~~~~~---------------------------------g~~~~  208 (286)
T 1q7f_A          175 QEIFISDNRAHCVKVFNYEGQY-------------LRQIGGE---------------------------------GITNY  208 (286)
T ss_dssp             SEEEEEEGGGTEEEEEETTCCE-------------EEEESCT---------------------------------TTSCS
T ss_pred             CCEEEEECCCCEEEEEcCCCCE-------------EEEEccC---------------------------------CccCC
Confidence            9877777778999999864211             0000000                                 01134


Q ss_pred             eeeeccCCCCCeEEEecCCC-eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          253 ISGIEPMPGEDKILVTSNDS-RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +..++++++|+++++...++ .|.+||. +++.+..+..+.....+..++++|+|+++++ +.++.|++|++...
T Consensus       209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          209 PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            56677777887777777775 9999995 5667777766544335678999999987777 56999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=1.5e-18  Score=145.87  Aligned_cols=259  Identities=8%  Similarity=0.023  Sum_probs=176.3

Q ss_pred             ceeeEEEEEecCCCEEEEEecC------------------------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           67 TKLITAANFCENGKFAVVGSYD------------------------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++......       ..+-.....
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~p~g   95 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-------KNLFYLPHG   95 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-------TTTCSSEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-------CCccCCceE
Confidence            4568999999999988888777                        479999998776543211       122346889


Q ss_pred             EeeCCCCCeEEEeeCCCeEEEEEccCcc-cceeecC-------ccccccceEEEEec-CCCEEEEee-cCceEEEeeecc
Q psy988          123 IEPMPGEDKILVTSNDSRIRLYDLRDLN-LSCKYKG-------YVNVSSQIKASFSH-DGKYIVSGS-ENQCIYIWKTHH  192 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~  192 (408)
                      ++++|+++.+++...++.|++||..... .+..+..       ......+..++++| +++.+++.+ .++.|++||...
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g  175 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG  175 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC
Confidence            9999999977777788999999986442 3443321       11223467899999 787777775 688999998432


Q ss_pred             ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC-CCeEEEecCC
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG-EDKILVTSND  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  271 (408)
                       ....            .+..          ...+.               ......-..+..++++|+ +..+++...+
T Consensus       176 -~~~~------------~~~~----------~g~~~---------------~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          176 -KFVT------------QWGE----------ESSGS---------------SPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             -CEEE------------EECE----------ECCSS---------------SCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             -CEEE------------Eecc----------CCCCC---------------CCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence             1110            0000          00000               000011123567777777 5666777888


Q ss_pred             CeEEEEEcCCCeeeeEEeeccceeceeEEEEcC------CCCEEEEecCCceEEEeeccccCccccccccCccccceee-
Q psy988          272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH------DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-  344 (408)
Q Consensus       272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-  344 (408)
                      +.|++||..+++.+..+........+..++|+|      +|+..++...+..|++|+..++            +.+..+ 
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g------------~~~~~~~  285 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG------------EIIDVFK  285 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC------------CEEEEEC
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC------------eEEEEEc
Confidence            999999999899888886544444677889999      4443333445568999998876            344444 


Q ss_pred             --eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          345 --KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       345 --~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                        .++.....+++++|                +|.++++...++.|++|++.....
T Consensus       286 ~~~~~~~~p~~ia~~~----------------dG~lyvad~~~~~I~~~~~~~~~~  325 (329)
T 3fvz_A          286 PVRKHFDMPHDIVASE----------------DGTVYIGDAHTNTVWKFTLTEKME  325 (329)
T ss_dssp             CSSSCCSSEEEEEECT----------------TSEEEEEESSSCCEEEEEEEECSS
T ss_pred             CCCCccCCeeEEEECC----------------CCCEEEEECCCCEEEEEeCCcccc
Confidence              35667789999999                898999999999999999876443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=3.5e-18  Score=143.60  Aligned_cols=262  Identities=9%  Similarity=0.056  Sum_probs=179.0

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCC------------------------CcEEEEecCCCCceeeeee-cCCceeeEEEEEe
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLD------------------------GKLRLWNIPDKKVAVWNEV-EGQTKLITAANFC   76 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~   76 (408)
                      -+.+.+++++| +|+++++...+                        +.|.+||..+++..  ... .++-..+..++++
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEEC
Confidence            36799999999 89988888777                        47999999888765  233 2445578999999


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCe-eeEEEEEeeccc-cccCCCCeEEEeeCC-CCCeEEEee-CCCeEEEEEccCcccc
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLK-YHTQIHVRSTRG-KNATGRKISGIEPMP-GEDKILVTS-NDSRIRLYDLRDLNLS  152 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~  152 (408)
                      ++|+++++...++.|++|+..... ....+......+ ...+-.....++++| ++..+++.+ .++.|++|| .+++.+
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            999988888889999999986542 222211000000 012334688999999 676666665 589999999 456665


Q ss_pred             eeecCcc--------ccccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          153 CKYKGYV--------NVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       153 ~~~~~~~--------~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ..+....        ....+..++++|+ +..+++...++.|++||..++......          ....+...+..+++
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~----------~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI----------KHASFGRNVFAISY  248 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE----------CCTTTTTCEEEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE----------eccccCCCcceeee
Confidence            5553211        1233678999998 666677777889999998744322110          01223445667777


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEE
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASF  302 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~  302 (408)
                      +| +..+.                            .+++.+++...+..|++||..+++.+..+... .....+..+++
T Consensus       249 ~p-g~~~~----------------------------~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~  299 (329)
T 3fvz_A          249 IP-GFLFA----------------------------VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA  299 (329)
T ss_dssp             ET-TEEEE----------------------------EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred             cC-CEEEE----------------------------eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence            77 32221                            13343444566779999999999988887421 22335778999


Q ss_pred             cCCCCEEEEecCCceEEEeecccc
Q psy988          303 SHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       303 s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +|+|.++++...++.|++|++...
T Consensus       300 ~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          300 SEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CCCCCEEEEECCCCEEEEEeCCcc
Confidence            999988888888999999998753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.84  E-value=2.3e-18  Score=145.37  Aligned_cols=261  Identities=11%  Similarity=0.097  Sum_probs=170.7

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH  102 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  102 (408)
                      ..|.++.|+| ++..++..+.++.++.|.   ++.  ...+..+...+.+++|+++|++++++..++.|.+||.++++..
T Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSG-KSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecC-CccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            4578889999 777777778889999993   222  2456666677899999999998788888999999999876643


Q ss_pred             EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC----CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988          103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      ....        .+...+.+++++|+++.+++...+    +.|.+||..++.....+........+..++++|+|+.+++
T Consensus        80 ~~~~--------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~  151 (333)
T 2dg1_A           80 RPFV--------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT  151 (333)
T ss_dssp             EEEE--------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred             EEee--------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEE
Confidence            3211        123579999999999877776655    6899999987765433332222344778999999987776


Q ss_pred             eec------CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          179 GSE------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       179 ~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      ...      .+.|..+|..++...             .+....                                   ..
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~-----------------------------------~~  183 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVT-------------PIIQNI-----------------------------------SV  183 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEE-------------EEEEEE-----------------------------------SS
T ss_pred             eccccccCCCceEEEEeCCCCEEE-------------EeecCC-----------------------------------Cc
Confidence            543      245555554321100             000000                                   12


Q ss_pred             eeeeccCCCCCeEE-EecCCCeEEEEEcCC-CeeeeEEe-----eccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          253 ISGIEPMPGEDKIL-VTSNDSRIRLYDLRD-LNLSCKYK-----GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       253 i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      +..++++|+++.++ +...++.|.+||+.+ ++....+.     .......+..++++++|+++++...++.|.+|+...
T Consensus       184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence            34556666766444 445678999999963 33322211     111112456799999999888877789999999843


Q ss_pred             cCccccccccCccccceeeeeec------cceEEEEecC
Q psy988          326 DYAKFSSVRRDRNDFWEGIKAHN------AVVTCAVFAP  358 (408)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~~  358 (408)
                                   +.+..+..+.      ..+.+++|+|
T Consensus       264 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          264 -------------YPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             -------------CEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             -------------CEEEEEEcCCCccccccCcceEEECC
Confidence                         2233333222      2688999999

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.84  E-value=8.8e-18  Score=156.18  Aligned_cols=281  Identities=9%  Similarity=-0.016  Sum_probs=177.9

Q ss_pred             CCCCCEEEEEeCC-C----cEEEEecCCCCceeee----eecCCceeeEEEEEecCCCEEEEEecCC-----EEEEEecc
Q psy988           32 PRDDRYFLSGSLD-G----KLRLWNIPDKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSYDG-----RCIFYTTD   97 (408)
Q Consensus        32 p~~~~~l~t~~~d-g----~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~   97 (408)
                      | +|++++....+ +    .+.+.+..+++...+.    ...+|...+..++|||||++|+.+..++     .|++||+.
T Consensus        81 ~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           81 K-KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             E-ETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             E-ECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            7 77777655432 2    3344444444432111    1123555789999999999998776644     89999999


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe----------------EEEEEccCcccc--eeecCcc
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR----------------IRLYDLRDLNLS--CKYKGYV  159 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~--~~~~~~~  159 (408)
                      +++....... .        ..+..++|+||++.|+.++.++.                |++|++.+++..  ..+....
T Consensus       160 tg~~~~~~~~-~--------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          160 GAKELPDVLE-R--------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             TTEEEEEEEE-E--------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             CCCCCccccc-C--------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            9876543211 1        13567899999999999887665                999999887643  2223322


Q ss_pred             ccccceEEEEecCCCEEEEeec-----CceEEEeeecc------ceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          160 NVSSQIKASFSHDGKYIVSGSE-----NQCIYIWKTHH------DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                      .......+.|+|||++|+..+.     +..|++||+.+      +..           ....+..+...+.. .|+|+|.
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~l~~~~~~~~~-~~s~dg~  298 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-----------KWVKLIDNFEGEYD-YVTNEGT  298 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-----------CCEEEECSSSSCEE-EEEEETT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-----------ceEEeeCCCCcEEE-EEeccCC
Confidence            2333567899999999988765     56899999864      210           01112222222222 2444444


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----CCeEEEEEcCCCee--eeEEeeccceeceeEEEE
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASF  302 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~  302 (408)
                      .                                   |+..+.    .+.|.+||+.+++.  ...+..+.....+..++|
T Consensus       299 ~-----------------------------------l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~  343 (710)
T 2xdw_A          299 V-----------------------------------FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC  343 (710)
T ss_dssp             E-----------------------------------EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE
T ss_pred             E-----------------------------------EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE
Confidence            4                                   443332    35799999987642  234444433235667889


Q ss_pred             cCCCCEEEEecCCce--EEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE
Q psy988          303 SHDGKYIVSGSENQC--IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV  380 (408)
Q Consensus       303 s~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  380 (408)
                      ++++.++++...++.  |++|++.++            +.+..+..+.+.+..+.++|                ++..|+
T Consensus       344 ~~~~~lv~~~~~~g~~~l~~~~~~~g------------~~~~~l~~~~~~v~~~~~s~----------------d~~~l~  395 (710)
T 2xdw_A          344 VRSNFLVLCYLHDVKNTLQLHDLATG------------ALLKIFPLEVGSVVGYSGQK----------------KDTEIF  395 (710)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEETTTC------------CEEEEECCCSSEEEEEECCT----------------TCSEEE
T ss_pred             EcCCEEEEEEEECCEEEEEEEECCCC------------CEEEecCCCCceEEEEecCC----------------CCCEEE
Confidence            888888888888885  555665444            33445566677889999999                665554


Q ss_pred             -EEe---cCCeEEEEeCCCCC
Q psy988          381 -SAD---FNGVIRVFLNKTKP  397 (408)
Q Consensus       381 -s~~---~dg~v~iw~~~~~~  397 (408)
                       +.+   ..+.|+.||+.+++
T Consensus       396 ~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEECSSCCCEEEEEETTSSS
T ss_pred             EEEeCCCCCCEEEEEECCCCc
Confidence             322   35889999998876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=1.1e-18  Score=161.38  Aligned_cols=267  Identities=10%  Similarity=0.017  Sum_probs=164.4

Q ss_pred             CceEEEEecc-CCeeEeEEEeCCceE---------EEEEc--CCCCCE-EEEEeC-CCcEEEEecC--C-CCceeeeeec
Q psy988            2 DKTVRLWHIS-RKECLCCFQHIDFVT---------AICFH--PRDDRY-FLSGSL-DGKLRLWNIP--D-KKVAVWNEVE   64 (408)
Q Consensus         2 Dg~i~vwd~~-~~~~~~~~~h~~~v~---------~~~~s--p~~~~~-l~t~~~-dg~i~iw~~~--~-~~~~~~~~~~   64 (408)
                      |+...||... .++......|...+.         ...|+  | |+++ |+.++. +..|.++++.  + +...   .+.
T Consensus        46 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~---~l~  121 (662)
T 3azo_A           46 AGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAVPR---PLT  121 (662)
T ss_dssp             TTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCCCE---ECS
T ss_pred             CCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCCCE---ecc
Confidence            5678899854 444444444766666         66665  9 8887 666554 5667777776  3 4433   444


Q ss_pred             C-----CceeeEEEEEecCCCEEEEEecC----------CEEEEEeccC------CeeeEEEEEeeccccccCCCCeEEE
Q psy988           65 G-----QTKLITAANFCENGKFAVVGSYD----------GRCIFYTTDQ------LKYHTQIHVRSTRGKNATGRKISGI  123 (408)
Q Consensus        65 ~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~  123 (408)
                      .     |...+..++|+|||+.|++++.+          ..|.+||+.+      ++.. .     ..  ..+...+..+
T Consensus       122 ~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-----l~--~~~~~~~~~~  193 (662)
T 3azo_A          122 PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-E-----LS--DDAHRFVTGP  193 (662)
T ss_dssp             CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-E-----SS--CSCSSEECCC
T ss_pred             CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-E-----EE--ecCCCcccCc
Confidence            4     67789999999999999998877          5899999987      4321 1     11  0122467788


Q ss_pred             eeCCCCCeEEEeeCC--------CeEEEEEcc-Cc---ccceeecCccccccceEEEEecCCCEEEEeecCc--eEEEee
Q psy988          124 EPMPGEDKILVTSND--------SRIRLYDLR-DL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ--CIYIWK  189 (408)
Q Consensus       124 ~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d  189 (408)
                      +|+|||++|+.++.+        ..|++||+. ++   +.......+  ...+..+.|+|||++++++..++  .|++||
T Consensus       194 ~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          194 RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWAPDGSLIVATDRTGWWNLHRVD  271 (662)
T ss_dssp             EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence            999999999988754        379999998 56   333222222  23467789999999777887788  555555


Q ss_pred             eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec
Q psy988          190 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS  269 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (408)
                      ..++...             .+..+...+....|++                          .+..++|+|++++++++.
T Consensus       272 ~~~~~~~-------------~l~~~~~~~~~p~w~~--------------------------~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          272 PATGAAT-------------QLCRREEEFAGPLWTP--------------------------GMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             TTTCCEE-------------ESSCCSSBSSCCCCST--------------------------TCCSEEECTTSCEEEEEB
T ss_pred             CCCCcee-------------ecccccccccCccccc--------------------------cCceEeEeCCCEEEEEEE
Confidence            5332111             0000111110111111                          134567788888889988


Q ss_pred             CCCeEEEE--EcCCCeeeeEEeeccceeceeEEEEcCCCCE--EEEecCCce--EEEeecccc
Q psy988          270 NDSRIRLY--DLRDLNLSCKYKGYVNVSSQIKASFSHDGKY--IVSGSENQC--IYIWKTHHD  326 (408)
Q Consensus       270 ~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~--i~iw~~~~~  326 (408)
                      . +.++||  |+.+++ +..+..+..  .+..+ ++++++.  +++++.+..  |+++|+.++
T Consensus       313 ~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          313 K-GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             S-SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             c-CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            8 999999  655555 455554433  34444 1444543  444555554  444555454

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=6.6e-19  Score=152.50  Aligned_cols=274  Identities=11%  Similarity=0.032  Sum_probs=164.0

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceE-EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE---------
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVT-AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA---------   72 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~-~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~---------   72 (408)
                      ..|.+||+.+++......+...+. .+.|+| ++++|+.++.++.|++|++.+++.....  ..+......         
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~g~~l~~~~~  136 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIY--TVDEEWKGYGTWVANSDC  136 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEE--ECCTTEEEEEEEEECTTS
T ss_pred             ceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEE--ecccccCCCCCEEEeccC
Confidence            368888999988766655544443 388999 9999999999999999999988765322  222222222         


Q ss_pred             ----------EEEecCCCEEEEE-----ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEee
Q psy988           73 ----------ANFCENGKFAVVG-----SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTS  136 (408)
Q Consensus        73 ----------~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  136 (408)
                                +.|+|+++.++..     ..+..|.+||+.+++......         +...+..+.|+| +++.|+..+
T Consensus       137 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~~  207 (396)
T 3c5m_A          137 TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---------DTAWLGHPIYRPFDDSTVGFCH  207 (396)
T ss_dssp             SEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---------ESSCEEEEEEETTEEEEEEEEE
T ss_pred             CccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---------CCcccccceECCCCCCEEEEEe
Confidence                      3467777766654     356689999998876433221         124688899999 788777765


Q ss_pred             CC------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccceeeeeecccCCC
Q psy988          137 ND------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHDYAKFSSVRRDRN  205 (408)
Q Consensus       137 ~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~  205 (408)
                      .+      ..|.+||+..++... +..+.....+..+.|+|+|++|+.++.+     +.|++||+.++.....       
T Consensus       208 ~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-------  279 (396)
T 3c5m_A          208 EGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-------  279 (396)
T ss_dssp             CSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-------
T ss_pred             cCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-------
Confidence            43      468888987655333 2222212236678999999988877654     4599999875432110       


Q ss_pred             ccccccccccceEEEEEEeC-CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee
Q psy988          206 DFWEGIKAHNAVVTCAVFAP-CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL  284 (408)
Q Consensus       206 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  284 (408)
                         ....   . .. +.|+| +++.++..... ..                +. ..++. -.....+..|++||+.+++.
T Consensus       280 ---~~~~---~-~~-~~~s~~dg~~l~~~~~~-~p----------------~~-~~~~~-~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          280 ---MVMP---P-CS-HLMSNFDGSLMVGDGCD-AP----------------VD-VADAD-SYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ---EECC---S-EE-EEEECSSSSEEEEEECC-C----------------------------CCCCCCEEEEEETTTTBC
T ss_pred             ---eeCC---C-CC-CCccCCCCceEEEecCC-cc----------------ee-ecccc-ccccCCCCcEEEEecccCce
Confidence               0000   0 11 55666 65544321000 00                00 00000 00002457899999988775


Q ss_pred             eeEEeecccee---------ceeEEEEcCCCCEEEEecC-CceEEEeecc
Q psy988          285 SCKYKGYVNVS---------SQIKASFSHDGKYIVSGSE-NQCIYIWKTH  324 (408)
Q Consensus       285 ~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~  324 (408)
                      . .+..+....         ....++|+|||+.|+..+. ++...+|.+.
T Consensus       333 ~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          333 Q-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             C-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             E-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            4 333332210         1446789999998887654 5555555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=3.7e-17  Score=138.82  Aligned_cols=241  Identities=10%  Similarity=0.050  Sum_probs=154.7

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCC---C--cEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLD---G--KLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      ++.|.+||+.+++....    ..+..++||| ||++|+.++.+   +  .|.+|++.+++...   +..+.. +..+.|+
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~---l~~~~~-~~~~~ws  112 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKK---ILEAKN-IRSLEWN  112 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEE---EEEESE-EEEEEEC
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEE---EEcCCC-ccceeEC
Confidence            46789999998876544    5688999999 99999888754   2  37888888776542   222334 8999999


Q ss_pred             cCCCEEEEEecC---------------------------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC
Q psy988           77 ENGKFAVVGSYD---------------------------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE  129 (408)
Q Consensus        77 ~~~~~l~~~~~d---------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  129 (408)
                      |+|+.|+.++.+                           ..|.+||+.+++....+..         . .+..+.|+|++
T Consensus       113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---------~-~~~~~~~spdg  182 (347)
T 2gop_A          113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---------P-RFSSGIWHRDK  182 (347)
T ss_dssp             TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---------E-TTCEEEEETTE
T ss_pred             CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---------C-CcccccCCCCe
Confidence            999999888743                           5789999988765222221         1 46788999999


Q ss_pred             CeEEEeeCCC-------eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC--------ceEEEeeeccce
Q psy988          130 DKILVTSNDS-------RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTHHDY  194 (408)
Q Consensus       130 ~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~  194 (408)
                       .++++..++       ...+|.+.+++. ..+..+   ..+..  ++|+|++|+.++.+        ..|++||  ++.
T Consensus       183 -~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~---~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~  253 (347)
T 2gop_A          183 -IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK---VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE  253 (347)
T ss_dssp             -EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE---ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred             -EEEEEecccccccccccccEEEeCCCce-EEeccC---cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCc
Confidence             777665432       344554444443 333322   22333  39999998877644        3577776  221


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                      ..            .....+...+..                                  .+.|+ ++ .+++++.++.+
T Consensus       254 ~~------------~l~~~~~~~~~~----------------------------------~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          254 VM------------GILDEVDRGVGQ----------------------------------AKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             EE------------ESSTTCCSEEEE----------------------------------EEEET-TE-EEEEEEETTEE
T ss_pred             eE------------eccccCCcccCC----------------------------------ccEEc-Cc-EEEEEecCCcE
Confidence            10            111122233332                                  14445 45 56778889999


Q ss_pred             EEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE-EEeecc
Q psy988          275 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI-YIWKTH  324 (408)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iw~~~  324 (408)
                      +|| +.+++...... +  ...+.+++|+|  .++++++.++.. .+|.+.
T Consensus       286 ~l~-~~~g~~~~~~~-~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          286 NLY-IWDGEIKPIAK-G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEE-EESSSEEEEEC-S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEE-EcCCceEEEec-C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            999 87665543333 2  33677899999  677777666654 677665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.82  E-value=6.4e-17  Score=135.66  Aligned_cols=262  Identities=11%  Similarity=0.047  Sum_probs=174.9

Q ss_pred             CceEEEEeccCCeeEeEEE-------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEE
Q psy988            2 DKTVRLWHISRKECLCCFQ-------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~   74 (408)
                      |++|.++|.++++....+.       .......+.+.  +++++++...++.|.+||..+++..  ..+. .......++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~--~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEV--GRIT-GFTSPRYIH   90 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEE--EEEE-CCSSEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEE--EEcC-CCCCCcEEE
Confidence            6899999999998876541       22456788885  4666777777899999999998875  3443 235678999


Q ss_pred             EecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccc
Q psy988           75 FCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLS  152 (408)
Q Consensus        75 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  152 (408)
                      ++++++..++...++.|.+||..+.+..........   .........+++  ++..++++.  .++.|.++|+++++..
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC---CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc---cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            999985444444889999999998876554432210   011113455666  456666665  4889999999998877


Q ss_pred             eeecCccccccceEEEEecCCCEEEEeecC----------ceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGSEN----------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                      ..+.....   ...+.++|+|++++++..+          +.|.++|..+......            +.          
T Consensus       166 ~~i~~g~~---p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~------------~~----------  220 (328)
T 3dsm_A          166 DELTIGIQ---PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ------------FK----------  220 (328)
T ss_dssp             EEEECSSC---BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE------------EE----------
T ss_pred             EEEEcCCC---ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE------------Ee----------
Confidence            76654322   4468899999877776554          7899999865421110            00          


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF  302 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  302 (408)
                      +                        .....+..++++|+++.++++..  .|.+||..+++................+++
T Consensus       221 ~------------------------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v  274 (328)
T 3dsm_A          221 F------------------------KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV  274 (328)
T ss_dssp             C------------------------CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred             c------------------------CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence            0                        01124556677777777777655  899999988776421111111235678999


Q ss_pred             cC-CCCEEEEe----cCCceEEEeecc
Q psy988          303 SH-DGKYIVSG----SENQCIYIWKTH  324 (408)
Q Consensus       303 s~-~~~~l~~~----~~dg~i~iw~~~  324 (408)
                      +| ++++.++.    ..++.|.+||..
T Consensus       275 dp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          275 NPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             cCCCCeEEEEcccccccCCEEEEECCC
Confidence            99 55555555    578999999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=1.3e-15  Score=126.36  Aligned_cols=285  Identities=10%  Similarity=0.003  Sum_probs=187.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      +...+.++++.| +++++++...++.|.+||.. +.... .....+...+.++++.++|..+++...++.|..|+... +
T Consensus        13 ~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~   88 (299)
T 2z2n_A           13 QDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I   88 (299)
T ss_dssp             SSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred             cCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c
Confidence            446799999999 88877776667899999988 55432 22233456789999999999887777788999999763 2


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      . .....   .   .....+.++++.+++..+++...++.|..||. +++... +........+..++++++|+.+++..
T Consensus        89 ~-~~~~~---~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           89 I-KEYTL---P---NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             E-EEEEC---S---STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             E-EEEeC---C---CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeC
Confidence            1 11111   1   12346889999998877777667789999998 554332 22111223467889999998777666


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .++.|..||. ++....                       +.. +                      .....+..+++++
T Consensus       160 ~~~~i~~~~~-~g~~~~-----------------------~~~-~----------------------~~~~~~~~i~~~~  192 (299)
T 2z2n_A          160 QNNAIGRITE-SGDITE-----------------------FKI-P----------------------TPASGPVGITKGN  192 (299)
T ss_dssp             TTTEEEEECT-TCCEEE-----------------------EEC-S----------------------STTCCEEEEEECT
T ss_pred             CCCEEEEEcC-CCcEEE-----------------------eeC-C----------------------CCCCcceeEEECC
Confidence            6788999987 321110                       000 0                      1122345666677


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      ++..+++...++.|.+||. +++.. .+........+..++++++|+++++...++.|..|+.. +.  .         .
T Consensus       193 ~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--~---------~  258 (299)
T 2z2n_A          193 DDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI--I---------E  258 (299)
T ss_dssp             TSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE--E---------E
T ss_pred             CCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc--e---------E
Confidence            7776666667889999998 66543 23222223467789999999977776678899999983 21  0         0


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ...+..+...+.++++ +                +|+++++.. .+.|..++.++.+
T Consensus       259 ~~~~~~~~~~~~~i~~-~----------------~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-D----------------GETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEECSSSSCCEEEEEE-C----------------SSCEEEEET-TTEEEEEEEC---
T ss_pred             EEeCCCCCCccceEEe-c----------------CCCEEEEec-CCcEEEEEcCccc
Confidence            0111233456889999 8                888887765 5667777776543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.81  E-value=6e-17  Score=135.83  Aligned_cols=272  Identities=12%  Similarity=0.032  Sum_probs=178.9

Q ss_pred             CCCcEEEEecCCCCceeeeee--c--CCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCC
Q psy988           43 LDGKLRLWNIPDKKVAVWNEV--E--GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR  118 (408)
Q Consensus        43 ~dg~i~iw~~~~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  118 (408)
                      .++.|.++|.++++.......  .  ........+.+. +++..++...++.|.+||..+.+....+..         ..
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---------~~   84 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG---------FT   84 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---------CS
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC---------CC
Confidence            378999999998876521100  0  122345667774 455556666679999999999887665521         23


Q ss_pred             CeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccc---cccceEEEEecCCCEEEEee--cCceEEEeeecc
Q psy988          119 KISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVN---VSSQIKASFSHDGKYIVSGS--ENQCIYIWKTHH  192 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~  192 (408)
                      ....+++++++ .++++. .++.|.+||+.+++....+.....   ...+..+++  ++..++++.  .++.|.++|+.+
T Consensus        85 ~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           85 SPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             SEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC
Confidence            67889998888 566655 789999999999887766553320   002334666  344555554  478999999876


Q ss_pred             ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND-  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  271 (408)
                      +.....            +.                                    ....+..+.++|+|++++++..+ 
T Consensus       162 ~~~~~~------------i~------------------------------------~g~~p~~i~~~~dG~l~v~~~~~~  193 (328)
T 3dsm_A          162 DKVVDE------------LT------------------------------------IGIQPTSLVMDKYNKMWTITDGGY  193 (328)
T ss_dssp             TEEEEE------------EE------------------------------------CSSCBCCCEECTTSEEEEEBCCBC
T ss_pred             CeEEEE------------EE------------------------------------cCCCccceEEcCCCCEEEEECCCc
Confidence            432211            00                                    01123456667777766665544 


Q ss_pred             ---------CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccce
Q psy988          272 ---------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       272 ---------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                               +.|.++|..+++....+..... .....++|+|++++|+++..  .|.+||..++....          ..
T Consensus       194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~----------~~  260 (328)
T 3dsm_A          194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV----------RP  260 (328)
T ss_dssp             TTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS----------SC
T ss_pred             cCCccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc--EEEEEECCCCceee----------ee
Confidence                     7899999999988777654222 25678999999999988765  89999998763210          01


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE----ecCCeEEEEeCCCCCCcccccc
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA----DFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~----~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                      .+.........++++|+               +++++++.    ..++.|.+|+.. ++....+++
T Consensus       261 ~~~~~~~~p~gi~vdp~---------------~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          261 FLEFRDTKYYGLTVNPN---------------NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             SBCCCSSCEEEEEECTT---------------TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             eecCCCCceEEEEEcCC---------------CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            11112456789999984               55666666    578999999998 776666554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.81  E-value=9.2e-18  Score=155.59  Aligned_cols=281  Identities=10%  Similarity=-0.045  Sum_probs=173.9

Q ss_pred             cCCCCCEEEEEeCCC---cEEEE--ecCCCCceeeee----ecCCceeeEEEEEecCCCEEEE-----EecCCEEEEEec
Q psy988           31 HPRDDRYFLSGSLDG---KLRLW--NIPDKKVAVWNE----VEGQTKLITAANFCENGKFAVV-----GSYDGRCIFYTT   96 (408)
Q Consensus        31 sp~~~~~l~t~~~dg---~i~iw--~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~iw~~   96 (408)
                      +| +|++++....++   .-.||  +..+++...+..    ..+|...+..++|||||++|+.     |+.+..|++||+
T Consensus        76 ~~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SR-RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EE-ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EE-ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            36 777777766543   34444  444444332111    1246668999999999999984     444568999999


Q ss_pred             cCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe-------------EEEEEccCcccc--eeecCcccc
Q psy988           97 DQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR-------------IRLYDLRDLNLS--CKYKGYVNV  161 (408)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~--~~~~~~~~~  161 (408)
                      .+++...    ..  ...  ......++|+||++.|+.++.+..             |++|++.++...  ..+....+.
T Consensus       155 ~tg~~~~----~~--~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~  226 (695)
T 2bkl_A          155 DSGEWSK----VD--VIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP  226 (695)
T ss_dssp             TTCCBCS----SC--CBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred             CCCCCcC----Cc--ccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence            9876431    00  000  011267899999999999988765             999999887632  233333333


Q ss_pred             ccceEEEEecCCCEEEEeecCc----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQ----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      ..+..+.|+|||++|+..+.++    .|++++..++.             ...+..+...+....+ +++. +       
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-------------~~~l~~~~~~~~~~~~-~~g~-l-------  284 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-------------FRLLVKGVGAKYEVHA-WKDR-F-------  284 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-------------CEEEEECSSCCEEEEE-ETTE-E-------
T ss_pred             EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-------------eEEeecCCCceEEEEe-cCCc-E-------
Confidence            3466889999999998877665    56666543211             1112222222233333 3333 2       


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEec---CCCeEEEEEcCCCee--eeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTS---NDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                                 ++...   .++.|.+||+.+++.  ...+..+.....+..++|+ ++.++++.
T Consensus       285 ---------------------------~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~  336 (695)
T 2bkl_A          285 ---------------------------YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEY  336 (695)
T ss_dssp             ---------------------------EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEE
T ss_pred             ---------------------------EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEE
Confidence                                       23333   368899999987653  2333333223346677887 67788888


Q ss_pred             cCCceEEEeeccccCccccccccCccccceeeeee-ccceEEEEecCCchhhhhccCCCCCCCcccEEE----EEecCCe
Q psy988          313 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH-NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV----SADFNGV  387 (408)
Q Consensus       313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~----s~~~dg~  387 (408)
                      ..|+..+||.+....           .....+..+ .+.|..++++|                +++.|+    +...+++
T Consensus       337 ~~dg~~~l~~~~~~g-----------~~~~~l~~~~~~~v~~~~~s~----------------d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          337 LKDATSEVRVATLKG-----------KPVRTVQLPGVGAASNLMGLE----------------DLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             EETTEEEEEEEETTC-----------CEEEECCCSSSSEECCCBSCT----------------TCSEEEEEEEETTEEEE
T ss_pred             EECCEEEEEEEeCCC-----------CeeEEecCCCCeEEEEeecCC----------------CCCEEEEEEcCCCCCCE
Confidence            999998888765210           222333333 56678888998                776665    2234688


Q ss_pred             EEEEeCCCCC
Q psy988          388 IRVFLNKTKP  397 (408)
Q Consensus       388 v~iw~~~~~~  397 (408)
                      |++||+.+++
T Consensus       390 v~~~d~~~g~  399 (695)
T 2bkl_A          390 IYKTSVSTGK  399 (695)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            9999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=1e-16  Score=136.04  Aligned_cols=259  Identities=8%  Similarity=0.072  Sum_probs=164.2

Q ss_pred             CCceEEEEEcCCCCCEEEEEe---------CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC---C
Q psy988           22 IDFVTAICFHPRDDRYFLSGS---------LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD---G   89 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g   89 (408)
                      ...+..+.+   +|++++...         .++.|.+|++.+++..   .+    ..+..++|+|||++|+..+.+   +
T Consensus        14 ~~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l----~~~~~~~~SpDg~~la~~~~~~~~~   83 (347)
T 2gop_A           14 FAYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI----ENATMPRISPDGKKIAFMRANEEKK   83 (347)
T ss_dssp             SCEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE----ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred             eEEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec----ccCCCeEECCCCCEEEEEEeccCCC
Confidence            345667777   466666542         2578999999988754   33    568899999999999987754   3


Q ss_pred             --EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---------------------------Ce
Q psy988           90 --RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---------------------------SR  140 (408)
Q Consensus        90 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~  140 (408)
                        .|.+|++.+++.......         .. +..+.|+|+++.|+.++.+                           ..
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  153 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEA---------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT  153 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE---------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred             cceEEEEECCCCceEEEEcC---------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence              477788877654332211         12 7889999999999888632                           57


Q ss_pred             EEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-------eEEEeeeccceeeeeecccCCCcccccccc
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-------CIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  213 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      |++||+.+++.+..+.. .   .+..+.|+|+| .++++..++       ...+|.+.++..             ..+..
T Consensus       154 l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-------------~~l~~  215 (347)
T 2gop_A          154 FWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-------------EKMFE  215 (347)
T ss_dssp             EEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-------------EEEEE
T ss_pred             EEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-------------EEecc
Confidence            99999988876344443 2   46788999999 777765432       334444322110             01111


Q ss_pred             ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC--------CCeEEEEEcCCCeee
Q psy988          214 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN--------DSRIRLYDLRDLNLS  285 (408)
Q Consensus       214 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~~~~  285 (408)
                      + ..+..+  +|+                                   |++|+.++.        ...|.+||  +++..
T Consensus       216 ~-~~~~~~--spd-----------------------------------g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          216 K-VSFYAV--DSD-----------------------------------GERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             E-ESEEEE--EEC-----------------------------------SSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             C-cceeeE--CCC-----------------------------------CCEEEEEEccccCCccccceEEEEC--CCceE
Confidence            1 112222  444                                   444444432        34688888  55543


Q ss_pred             eEEeeccceeceeE-EEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhh
Q psy988          286 CKYKGYVNVSSQIK-ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  364 (408)
Q Consensus       286 ~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  364 (408)
                      .....+  ...+.. +.|+ |+ ++++++.++.++|| +.++            +. ..+..+...|.+++|+|      
T Consensus       256 ~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g------------~~-~~~~~~~~~v~~~~~s~------  311 (347)
T 2gop_A          256 GILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG------------EI-KPIAKGRHWIMGFDVDE------  311 (347)
T ss_dssp             ESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS------------SE-EEEECSSSEEEEEEESS------
T ss_pred             eccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC------------ce-EEEecCCCeEEeeeeeC------
Confidence            322222  224555 8899 88 88999999999999 8743            12 23344577889999975      


Q ss_pred             hccCCCCCCCcccEEEEEecCCeE-EEEeCC
Q psy988          365 AQMEPDKSESTGYVLVSADFNGVI-RVFLNK  394 (408)
Q Consensus       365 ~~~~~~~~s~~~~~l~s~~~dg~v-~iw~~~  394 (408)
                                  .++++++.++.. .+|.+.
T Consensus       312 ------------~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          312 ------------IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ------------SEEEEEECSSSCCEEEEES
T ss_pred             ------------cEEEEEcCCCChHHheEeC
Confidence                        466777666654 777765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.79  E-value=9.5e-16  Score=130.15  Aligned_cols=269  Identities=9%  Similarity=-0.067  Sum_probs=173.2

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeec--CC---ce
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVE--GQ---TK   68 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~--~~---~~   68 (408)
                      +|.++|..+++.+..+.-...- .+.++| |+++|+.+.          .++.|.+||..+.+......+.  ..   ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            7899999999998877633333 999999 999888875          3678999999887665322222  00   12


Q ss_pred             eeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEE-EEEeeccccccCCCCeEEEeeCCCCC-eEEEeeCCCeEEEE
Q psy988           69 LITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQ-IHVRSTRGKNATGRKISGIEPMPGED-KILVTSNDSRIRLY  144 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~  144 (408)
                      ....+.|+|||++|++++.  ++.|.++| .+++.... ....            .++.+.|+++ .+++.+.||.+.++
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------~~~~~~~~~~~~~~~~~~dg~~~~v  192 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------TCYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------------ceEEEEeCCCceEEEEcCCCCEEEE
Confidence            3458899999999999874  47899999 88776443 2210            1234455553 45556778999999


Q ss_pred             EccCcccceeecC---cccccc-ceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          145 DLRDLNLSCKYKG---YVNVSS-QIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       145 d~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      |. +++.......   ...... .....+.+++..++..+..+.+.+.|+........          ..+.........
T Consensus       193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~----------~~~~~~~~~~~~  261 (373)
T 2mad_H          193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK----------APIDALSGGRKA  261 (373)
T ss_pred             EC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe----------eeeeecCCcccc
Confidence            99 7765532210   011111 12245666666555555778899999864321110          001101111112


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----------CCeEEEEEcCCCeeeeEEee
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYKG  290 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~  290 (408)
                      ..|.|.+..                         .+.++|+++.+++...          ++.|.++|+.+++.+..+..
T Consensus       262 ~~~~p~g~~-------------------------~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~  316 (373)
T 2mad_H          262 DTWRPGGWQ-------------------------QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL  316 (373)
T ss_pred             cceecCceE-------------------------eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC
Confidence            233333322                         2456777777666532          36899999999999888864


Q ss_pred             ccceeceeEEEEcCCCC-EEEEec-CCceEEEeecccc
Q psy988          291 YVNVSSQIKASFSHDGK-YIVSGS-ENQCIYIWKTHHD  326 (408)
Q Consensus       291 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~  326 (408)
                      ..   ....+.|+|||+ +++++. .++.|.++|..+.
T Consensus       317 g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          317 GH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            32   456899999999 777777 4899999999886

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=7e-16  Score=130.11  Aligned_cols=259  Identities=10%  Similarity=0.014  Sum_probs=167.8

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |+.++.|   .++....+. +...+.+++|+| ++++++++..++.|.+||.++++...  ....+...+.+++++++|+
T Consensus        26 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~~dg~   99 (333)
T 2dg1_A           26 ESELQTI---TAEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIHKDGR   99 (333)
T ss_dssp             GGGSCEE---ECEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEECTTSC
T ss_pred             cccCccc---ccceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEE--EeeCCCCCcceEEECCCCc
Confidence            4566777   344444444 777889999999 89888888889999999998887653  2224567799999999999


Q ss_pred             EEEEEecC----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcc
Q psy988           81 FAVVGSYD----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLN  150 (408)
Q Consensus        81 ~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~  150 (408)
                      ++++...+    +.|.+||.++........  .    ......+.+++++|+++.+++...      .+.|..+|..+++
T Consensus       100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~--~----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~  173 (333)
T 2dg1_A          100 LFVCYLGDFKSTGGIFAATENGDNLQDIIE--D----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT  173 (333)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEEC--S----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred             EEEEeCCCCCCCceEEEEeCCCCEEEEEEc--c----CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence            87777666    689999988765432211  0    112347899999999977666543      3556666665544


Q ss_pred             cceeecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          151 LSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      ......   ....+..++|+|++++|+.+ ..++.|++||+.+.....           ..+.      ..+...     
T Consensus       174 ~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~-----------~~~~------~~~~~~-----  228 (333)
T 2dg1_A          174 VTPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI-----------QPFG------ATIPYY-----  228 (333)
T ss_dssp             EEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE-----------EEEE------EEEEEE-----
T ss_pred             EEEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc-----------cccc------ceEEEe-----
Confidence            332221   11235678999999866554 457899999985311000           0000      000000     


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc----eeceeEEEEcCC
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN----VSSQIKASFSHD  305 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~v~~~~~s~~  305 (408)
                                      . .....+..++++++|+++++...++.|.+||. +++....+.....    ...+.+++|+||
T Consensus       229 ----------------~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          229 ----------------F-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             ----------------C-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             ----------------c-CCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence                            0 00124456777778877777777889999998 4666666654321    014678999999


Q ss_pred             CCEEEEecCC
Q psy988          306 GKYIVSGSEN  315 (408)
Q Consensus       306 ~~~l~~~~~d  315 (408)
                      ++.|+.++.+
T Consensus       291 g~~L~v~~~~  300 (333)
T 2dg1_A          291 TNQLIICSND  300 (333)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCEEEEEeCc
Confidence            8877765554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=3.5e-16  Score=129.58  Aligned_cols=242  Identities=8%  Similarity=0.029  Sum_probs=162.8

Q ss_pred             EeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988           20 QHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        20 ~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      .+.....+++|+| +++ +++++..++.|..|+..++ .   ..+..+...+.+++++++|+++++...++.|.+||..+
T Consensus        25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ-L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC-E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC-e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            3677789999999 887 7888888999999999887 3   35555677799999999999887776778999999977


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEE----ee-------------CCCeEEEEEccCcccceeecCcccc
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILV----TS-------------NDSRIRLYDLRDLNLSCKYKGYVNV  161 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~  161 (408)
                      ++........  .  ......+..++++|+|+.+++    ++             ..+.|..++.. ++.. .+...  .
T Consensus       100 g~~~~~~~~~--~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~--~  171 (296)
T 3e5z_A          100 GEWESIADSF--E--GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRD--R  171 (296)
T ss_dssp             CCEEEEECEE--T--TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECC--C
T ss_pred             CcEEEEeecc--C--CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecC--C
Confidence            6643222111  0  111235678999999987776    32             13456666655 4332 22222  2


Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      ..+..++|+|+++.+++...++.|++|++.. +.....                    .. .+                 
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~--------------------~~-~~-----------------  213 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ--------------------GV-HF-----------------  213 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE--------------------EE-EE-----------------
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC--------------------Ce-Ee-----------------
Confidence            2356799999999887777788999999852 110000                    00 00                 


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE-cCCCCEEEEecCCceEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF-SHDGKYIVSGSENQCIY  319 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~  319 (408)
                            ......+..++++++|+++++.  ++.|.+||.. ++.+..+..+..   +.+++| +|+++.|++++.++ +.
T Consensus       214 ------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~  280 (296)
T 3e5z_A          214 ------TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FW  280 (296)
T ss_dssp             ------CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EE
T ss_pred             ------eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EE
Confidence                  0112234567777888766655  7889999986 777777665433   678899 68999998887763 44


Q ss_pred             Eeeccc
Q psy988          320 IWKTHH  325 (408)
Q Consensus       320 iw~~~~  325 (408)
                      -++..+
T Consensus       281 ~~~~~~  286 (296)
T 3e5z_A          281 SIETNV  286 (296)
T ss_dssp             EEECSC
T ss_pred             EEEccc
Confidence            444444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=4.4e-16  Score=128.99  Aligned_cols=242  Identities=10%  Similarity=0.079  Sum_probs=160.8

Q ss_pred             eecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           62 EVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      .+..+.....+++|+|+|+ +++++..++.|..|+..+.  .....        .+...+.+++++|+++.+++...++.
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--------~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--------HPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE--------SSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE--------CCCCCcceeeECCCCcEEEEecCCCe
Confidence            4445556678999999998 7778888999999999876  22221        12346899999999987776666789


Q ss_pred             EEEEEccCcccceeecCc--cccccceEEEEecCCCEEEEeec-----------------CceEEEeeeccceeeeeecc
Q psy988          141 IRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSE-----------------NQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~  201 (408)
                      |.+||..+++........  .....+..++++|+|+++++...                 .+.|..++..          
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----------  161 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----------  161 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----------
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----------
Confidence            999999877754332211  11123557899999988776321                 1233333321          


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-  280 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-  280 (408)
                                               ++.              .........+..++|+|+++.+++.+.++.|.+||+. 
T Consensus       162 -------------------------g~~--------------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~  202 (296)
T 3e5z_A          162 -------------------------GTL--------------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA  202 (296)
T ss_dssp             -------------------------SCE--------------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred             -------------------------CCE--------------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence                                     000              0001122344667888888888777888999999997 


Q ss_pred             CCee---eeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEe-
Q psy988          281 DLNL---SCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF-  356 (408)
Q Consensus       281 ~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-  356 (408)
                      +++.   ...+ . .....+..++++++|+++++.  ++.|.+|+...             +.+..+..+.. +++++| 
T Consensus       203 ~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-------------~~~~~~~~~~~-~~~~~f~  264 (296)
T 3e5z_A          203 RGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-------------DELGRVLTPQT-TSNLCFG  264 (296)
T ss_dssp             SSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-------------CEEEEEECSSC-CCEEEEE
T ss_pred             CCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-------------CEEEEEECCCC-ceeEEEE
Confidence            5554   2333 1 123345678999999977766  78999999863             45555666666 899999 


Q ss_pred             cCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          357 APCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      .|                +++.|..++.++ +.-++.++.+
T Consensus       265 ~~----------------d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          265 GP----------------EGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             ST----------------TSCEEEEEETTE-EEEEECSCCB
T ss_pred             CC----------------CCCEEEEEcCCe-EEEEEccccc
Confidence            57                888888887664 4444554443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=2.7e-16  Score=146.19  Aligned_cols=249  Identities=12%  Similarity=0.086  Sum_probs=163.2

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCC-----cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCE-------
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDG-----KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR-------   90 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------   90 (408)
                      ..+..++||| ||++||.+..++     .|++||+.+++.... .+  ....+..++|+|||+.|+.++.++.       
T Consensus       125 ~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             EEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc--cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3588999999 999998776543     899999999876531 12  1223678999999999999988765       


Q ss_pred             ---------EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-----CCeEEEEEccC------cc
Q psy988           91 ---------CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-----DSRIRLYDLRD------LN  150 (408)
Q Consensus        91 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~  150 (408)
                               |++|++.+...........    ..+...+..+.|+|++++|+.++.     +..|++||+.+      +.
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~----~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEF----PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccCCCCEEEEEECCCCcccceEEecc----CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence                     9999998765322221111    112345788999999999988754     57899999986      43


Q ss_pred             -cceeecCccccccceEEEEecCCCEEEEeecC----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          151 -LSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       151 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                       ....+..+...  .. ..|+++|+.|+..+..    +.|.+||+.++..          ..++.+..+..         
T Consensus       277 ~~~~~l~~~~~~--~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----------~~~~~l~~~~~---------  334 (710)
T 2xdw_A          277 LKWVKLIDNFEG--EY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----------SKWKVLVPEHE---------  334 (710)
T ss_dssp             CCCEEEECSSSS--CE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCG----------GGCEEEECCCS---------
T ss_pred             cceEEeeCCCCc--EE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc----------ccceeccCCCC---------
Confidence             34444443332  22 3588999888776553    3688888764310          00111111211         


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEc
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  303 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s  303 (408)
                                              ...+..+.+++++.++++...++  .|.+||+.+++....+..+  ...+..+.++
T Consensus       335 ------------------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s  388 (710)
T 2xdw_A          335 ------------------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQ  388 (710)
T ss_dssp             ------------------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECC
T ss_pred             ------------------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecC
Confidence                                    01233344444445566777777  4667787677776777665  3367788999


Q ss_pred             CCCCEEEEe----cCCceEEEeeccccC
Q psy988          304 HDGKYIVSG----SENQCIYIWKTHHDY  327 (408)
Q Consensus       304 ~~~~~l~~~----~~dg~i~iw~~~~~~  327 (408)
                      |+++.++..    ...+.|++||+.++.
T Consensus       389 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          389 KKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            999876632    245789999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.78  E-value=6e-16  Score=137.92  Aligned_cols=284  Identities=11%  Similarity=0.035  Sum_probs=186.1

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEecc--CCeeeEEEEEeecc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD--QLKYHTQIHVRSTR  111 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~  111 (408)
                      ++.++++...+++|.++|..+++..  ..+... ..+..+.|+|||+++++++.++.|.+||+.  +.+....+..    
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~--~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----  238 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIK--TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----  238 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEE--EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEE--EEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----
Confidence            4566777778899999999998876  344432 245689999999999999999999999995  6554433321    


Q ss_pred             ccccCCCCeEEEeeC----CCCCeEEEeeC-CCeEEEEEccCcccceeecCccc---------cccceEEEEecCCCEE-
Q psy988          112 GKNATGRKISGIEPM----PGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVN---------VSSQIKASFSHDGKYI-  176 (408)
Q Consensus       112 ~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l-  176 (408)
                           ......++|+    |+|++++++.. ++.|.++|..+.+.+..+.....         ...+..+..++++..+ 
T Consensus       239 -----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          239 -----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             -----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             -----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence                 1246789999    69999988755 69999999999888776543210         1235567778876554 


Q ss_pred             EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          177 VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      +....+|.|.++|.......                    .+..+                          ........+
T Consensus       314 v~~~~~g~v~~vd~~~~~~~--------------------~v~~i--------------------------~~~~~~~d~  347 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNL--------------------KTTEI--------------------------SAERFLHDG  347 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEE--------------------EEEEE--------------------------ECCSSEEEE
T ss_pred             EEecCCCeEEEEecCCCccc--------------------eeeee--------------------------eccccccCc
Confidence            44456789999987542100                    01110                          111223455


Q ss_pred             ccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEee-ccceeceeEEE-EcCCCCEE-EEec-CCceEEEeeccccCcccc
Q psy988          257 EPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKAS-FSHDGKYI-VSGS-ENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       257 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~-~s~~~~~l-~~~~-~dg~i~iw~~~~~~~~~~  331 (408)
                      .|+|++++++++ ..+++|.++|+.++++...+.. .....+-.... ++|++..+ +++. .++.|.+++......+  
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--  425 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP--  425 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc--
Confidence            667777776655 4678999999999998877654 22111111122 57875544 4543 4689999998763211  


Q ss_pred             ccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec-------CCeEEEEeCCCC
Q psy988          332 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF-------NGVIRVFLNKTK  396 (408)
Q Consensus       332 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-------dg~v~iw~~~~~  396 (408)
                         ...++.++.+......-.-+..+|                ++++|.....       .++|.++|+.+.
T Consensus       426 ---~~~~kvv~~i~~~g~g~~~i~~~p----------------~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          426 ---DNAWKILDSFPALGGGSLFIKTHP----------------NSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             ---TTBTSEEEEEECSCSCCCCEECCT----------------TCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             ---cccCEEEEEEecCCCCCEEEEeCC----------------CCCeEEEecCCCCCcccCceEEEEECCcc
Confidence               112345555554433334477899                7877777552       358999999877

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.77  E-value=1.9e-15  Score=126.34  Aligned_cols=273  Identities=9%  Similarity=0.020  Sum_probs=170.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecC-----C
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEG-----Q   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~-----~   66 (408)
                      ++.|.+.|..+++.+..+.-...-. +.++| |+++++++.          .++.|.+||..+.+......+..     .
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P~-va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLPN-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSCE-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCc-EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            6789999999999999998433334 99999 888887765          36789999999988763222221     0


Q ss_pred             ceeeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988           67 TKLITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  144 (408)
                      ......+.|+|||++++++..  ++.|.++|+.+.+....+....          . ...+....+.+++.+.||.+.+.
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------~-~~~~P~g~~~~~~~~~DG~~~~v  204 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------C-YHIFPTAPDTFFMHCRDGSLAKV  204 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------E-EEEEEEETTEEEEEETTSCEEEE
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------c-ceeecCCCceeEEECCCCCEEEE
Confidence            124557899999999998874  6899999999998776664311          1 12222234566677778888888


Q ss_pred             EccC-cccceeecCccc--cccc-eEEEEe-cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          145 DLRD-LNLSCKYKGYVN--VSSQ-IKASFS-HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       145 d~~~-~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      ++.+ ++..........  ...+ ....|. ++|++++ .+.+|.+++.|+..+......       .+..+....  + 
T Consensus       205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~-------~~~~~~~~~--~-  273 (386)
T 3sjl_D          205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP-------AVEALTEAE--R-  273 (386)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC-------CEESSCHHH--H-
T ss_pred             ECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec-------ceecccccc--c-
Confidence            8865 444221111110  0111 123554 5776555 455799999998654321110       000000000  0 


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----------CCeEEEEEcCCCeeeeEEe
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYK  289 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~  289 (408)
                      ...|.|.+                         ...++++++++.+++...          .+.|.++|+.+++.+..+.
T Consensus       274 ~~g~~p~g-------------------------~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~  328 (386)
T 3sjl_D          274 ADGWRPGG-------------------------WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  328 (386)
T ss_dssp             HTTEEECS-------------------------SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             cccccCCC-------------------------cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence            00011111                         111333445555555421          3579999999999998887


Q ss_pred             eccceeceeEEEEcCCCC-EEEEe-cCCceEEEeecccc
Q psy988          290 GYVNVSSQIKASFSHDGK-YIVSG-SENQCIYIWKTHHD  326 (408)
Q Consensus       290 ~~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~  326 (408)
                      ...   .+..+.+++|++ +|++. ..++.|.++|..++
T Consensus       329 vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          329 MGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             EEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            532   566899999997 66664 45899999999887

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.76  E-value=1.7e-16  Score=147.18  Aligned_cols=262  Identities=8%  Similarity=-0.034  Sum_probs=161.2

Q ss_pred             EEEeccCCeeEeEEE-------eCCceEEEEEcCCCCCEEE-----EEeCCCcEEEEecCCCCceeeeeecCCceeeEEE
Q psy988            6 RLWHISRKECLCCFQ-------HIDFVTAICFHPRDDRYFL-----SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAA   73 (408)
Q Consensus         6 ~vwd~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~   73 (408)
                      .+.+...++....+.       |...+.+++||| ||++||     .|+.+..|++||+.+++......+...  ....+
T Consensus        97 ~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~  173 (695)
T 2bkl_A           97 YWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATP  173 (695)
T ss_dssp             EEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCC
T ss_pred             EEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccce
Confidence            334444555444443       444689999999 999998     344456899999999876411122211  12678


Q ss_pred             EEecCCCEEEEEecCCE-------------EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC-
Q psy988           74 NFCENGKFAVVGSYDGR-------------CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS-  139 (408)
Q Consensus        74 ~~~~~~~~l~~~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  139 (408)
                      +|+|||+.|+.++.|..             |++|++.+..........    ...+...+..+.|+|+|++|+.++.++ 
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~----~~~~~~~~~~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE----RTGDPTTFLQSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC----CCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe----cCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence            99999999999988776             999999877532221111    112334688999999999998887655 


Q ss_pred             ---eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec----CceEEEeeeccceeeeeecccCCCccccccc
Q psy988          140 ---RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  212 (408)
Q Consensus       140 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
                         .|++|+..+++.. .+..+..  ......+ ++|+ ++..+.    ++.|.+||+.++...          .+..+.
T Consensus       250 ~~~~l~~~~~~~~~~~-~l~~~~~--~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~----------~~~~l~  314 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFR-LLVKGVG--AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA----------SWKEIV  314 (695)
T ss_dssp             TEEEEEEECTTCSSCE-EEEECSS--CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG----------GCEEEE
T ss_pred             CceEEEEEcCCCCceE-EeecCCC--ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc----------CCeEEe
Confidence               6777766555433 3333222  2333444 6676 554443    578999998653110          011111


Q ss_pred             cc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-CCeeeeEEe
Q psy988          213 AH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYK  289 (408)
Q Consensus       213 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~  289 (408)
                      .+  ...+..+.                                   ++ ++..+++...|+..+||.+. +++....+.
T Consensus       315 ~~~~~~~l~~~~-----------------------------------~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~  358 (695)
T 2bkl_A          315 PEDSSASLLSVS-----------------------------------IV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ  358 (695)
T ss_dssp             CCCSSCEEEEEE-----------------------------------EE-TTEEEEEEEETTEEEEEEEETTCCEEEECC
T ss_pred             cCCCCCeEEEEE-----------------------------------EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec
Confidence            11  22233333                                   33 34456777888888877654 355444444


Q ss_pred             eccceeceeEEEEcCCCCEEE----EecCCceEEEeecccc
Q psy988          290 GYVNVSSQIKASFSHDGKYIV----SGSENQCIYIWKTHHD  326 (408)
Q Consensus       290 ~~~~~~~v~~~~~s~~~~~l~----~~~~dg~i~iw~~~~~  326 (408)
                      .+ ....+..++++|+++.++    +....+.|++||+.++
T Consensus       359 ~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          359 LP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             CS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             CC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            32 123566788999998777    3344688999999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.76  E-value=4.7e-15  Score=123.99  Aligned_cols=297  Identities=9%  Similarity=0.030  Sum_probs=191.8

Q ss_pred             EEEcCCCCCEEEEEeC-----CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEE
Q psy988           28 ICFHPRDDRYFLSGSL-----DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCI   92 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~   92 (408)
                      ....| +++.++....     ++.|.+.|..+++..  ..+.....+ . +.++|||+++++++          .++.|.
T Consensus        38 ~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            45568 7887777765     679999999998876  444433333 3 99999999988876          367899


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      +||..+.+....+...... ..........+.++|||++++++..  ++.|.++|+.+++.+.++.....     ...+.
T Consensus       113 viD~~t~~v~~~I~v~~g~-r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P  186 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAP-RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFP  186 (386)
T ss_dssp             EECTTTCCEEEEEEETTCC-CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEE
T ss_pred             EEECCCCeEEEEEECCCcc-ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeec
Confidence            9999998877766542200 0011224567899999999998864  68999999999998887753221     12344


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      ...+.+++.+.||.+.+.++........ .. .                 -.+.++...+                    
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~-~-----------------~~~~~~~~~~--------------------  227 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFGTEGTPEI-TH-T-----------------EVFHPEDEFL--------------------  227 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEE-EE-C-----------------CCCSCTTSCB--------------------
T ss_pred             CCCceeEEECCCCCEEEEECCCCCeEEE-ee-c-----------------ceeccccccc--------------------
Confidence            4456677888899888888754211100 00 0                 0000110000                    


Q ss_pred             ceeeeecc-CCCCCeEEEecCCCeEEEEEcCCCe--eeeEEee--------ccceeceeEEEEcCCCCEEEEecC-----
Q psy988          251 RKISGIEP-MPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKG--------YVNVSSQIKASFSHDGKYIVSGSE-----  314 (408)
Q Consensus       251 ~~i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~-----  314 (408)
                        .....| .++|++++ .+.+|++.+.|+.+..  ....+..        .........++++|+++.++....     
T Consensus       228 --~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          228 --INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             --CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             --cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence              001133 24565444 4557999999997654  3333320        001122334688999998887642     


Q ss_pred             -----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEE-EecCCe
Q psy988          315 -----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVS-ADFNGV  387 (408)
Q Consensus       315 -----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s-~~~dg~  387 (408)
                           .+.|.+.|+.+.            +.+..+.- ...+.+++++|                |++ +|++ ...++.
T Consensus       305 ~hk~~~~~V~viD~~t~------------kv~~~i~v-g~~~~~lavs~----------------D~~~~ly~tn~~~~~  355 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTG------------ERLAKFEM-GHEIDSINVSQ----------------DEKPLLYALSTGDKT  355 (386)
T ss_dssp             CTTSCEEEEEEEETTTC------------CEEEEEEE-EEEECEEEECS----------------SSSCEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCC------------eEEEEEEC-CCCcceEEECC----------------CCCeEEEEEcCCCCe
Confidence                 257999999886            45555542 23688999999                775 5555 455999


Q ss_pred             EEEEeCCCCCCcccccccc
Q psy988          388 IRVFLNKTKPKHSSLPVSA  406 (408)
Q Consensus       388 v~iw~~~~~~~~~~~~~s~  406 (408)
                      |.++|..+++....++...
T Consensus       356 VsViD~~t~k~~~~i~~~~  374 (386)
T 3sjl_D          356 LYIHDAESGEELRSVNQLG  374 (386)
T ss_dssp             EEEEETTTCCEEEEECCCC
T ss_pred             EEEEECCCCcEEEEecCCC
Confidence            9999999999888776643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.7e-15  Score=123.76  Aligned_cols=243  Identities=8%  Similarity=-0.026  Sum_probs=161.5

Q ss_pred             eeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           69 LITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                      ...+++++++|++++ +...++.|.+|+..+.....    ..    ......+.++++.++++.+++.. ++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----~~----~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----LP----FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE----CC----CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce----Ee----eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCC
Confidence            678899999999766 54678999999876543211    00    11123678899999888555544 8899999987


Q ss_pred             CcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          148 DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                      ..... .+.. .....+..++++++|+.+++...++.|.+|+..+.....            .                 
T Consensus        96 ~~~~~-~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~------------~-----------------  144 (270)
T 1rwi_B           96 SNNQT-VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV------------L-----------------  144 (270)
T ss_dssp             CSCCE-ECCC-CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE------------C-----------------
T ss_pred             CceEe-eeec-CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe------------e-----------------
Confidence            65432 2221 112346789999999877776677889988653211000            0                 


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  307 (408)
                                        .......+..++++++++.+++...++.|.+||............  ....+..++++++|+
T Consensus       145 ------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~  204 (270)
T 1rwi_B          145 ------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGT  204 (270)
T ss_dssp             ------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCC
T ss_pred             ------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc--CCCCceEEEECCCCC
Confidence                              001112355677778887677777788999999886654322211  123567899999998


Q ss_pred             EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe
Q psy988          308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV  387 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  387 (408)
                      ++++...++.|.+|+......            ......+...+.+++++|                +|+++++...++.
T Consensus       205 l~v~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~p~~i~~~~----------------~g~l~v~~~~~~~  256 (270)
T 1rwi_B          205 VYVTEHNTNQVVKLLAGSTTS------------TVLPFTGLNTPLAVAVDS----------------DRTVYVADRGNDR  256 (270)
T ss_dssp             EEEEETTTSCEEEECTTCSCC------------EECCCCSCSCEEEEEECT----------------TCCEEEEEGGGTE
T ss_pred             EEEEECCCCcEEEEcCCCCcc------------eeeccCCCCCceeEEECC----------------CCCEEEEECCCCE
Confidence            888877788999999865411            111112335688999999                8999999999999


Q ss_pred             EEEEeCCCCCCc
Q psy988          388 IRVFLNKTKPKH  399 (408)
Q Consensus       388 v~iw~~~~~~~~  399 (408)
                      |+++++...+.+
T Consensus       257 v~~~~~~~~~~~  268 (270)
T 1rwi_B          257 VVKLTSLEHHHH  268 (270)
T ss_dssp             EEEECCCGGGSC
T ss_pred             EEEEcCCCcccc
Confidence            999999877654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.75  E-value=3.4e-14  Score=120.63  Aligned_cols=292  Identities=8%  Similarity=-0.032  Sum_probs=183.4

Q ss_pred             EEcCCCCCEEEEEeC--CC---cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEEE
Q psy988           29 CFHPRDDRYFLSGSL--DG---KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCIF   93 (408)
Q Consensus        29 ~~sp~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i   93 (408)
                      ...| +++++++...  ..   .|.++|..+++..  ..+.....+  .+.++|||++++++.          .++.|.+
T Consensus        27 ~~~~-~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           27 APGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cCCC-CCCEEEEeCCcccCCccEEEEEECCCCeEE--EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence            3446 7777777653  22   8899999988765  455443333  999999999999886          3678999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee-ecCccccccceEEEEe
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFS  170 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~  170 (408)
                      ||..+.+........... ..........+.++|++++|+++..  ++.|.++| .+++.... +....      ++.+.
T Consensus       102 iD~~t~~~~~~i~~~~~~-~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~  173 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAP-RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT------CYHIH  173 (373)
T ss_pred             EECCCCcEEEEEECCCcc-ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc------eEEEE
Confidence            999987766555432000 0001123457899999999999864  57899999 99887766 43321      23455


Q ss_pred             cCC-CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCC
Q psy988          171 HDG-KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNAT  249 (408)
Q Consensus       171 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (408)
                      |++ +.+++.+.||.+.++|. ++.........      ..+ ....++                               
T Consensus       174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~------~~~-~~~~p~-------------------------------  214 (373)
T 2mad_H          174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG------AML-TAAQNL-------------------------------  214 (373)
T ss_pred             eCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc------ccc-cCCcce-------------------------------
Confidence            555 44566678899999998 54322110000      000 000000                               


Q ss_pred             CceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeecc--------ceeceeEEEEcCCCCEEEEecC-----
Q psy988          250 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGYV--------NVSSQIKASFSHDGKYIVSGSE-----  314 (408)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~-----  314 (408)
                         .....+.+++..++..+..+.+.+.|+.+..  ....+....        .......+.++|+++.+++...     
T Consensus       215 ---~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~  291 (373)
T 2mad_H          215 ---LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             ---eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence               0112233333333444467789998886543  222221100        0112234789999998877543     


Q ss_pred             -----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCe
Q psy988          315 -----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGV  387 (408)
Q Consensus       315 -----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~  387 (408)
                           ++.|.++|..+.            +.+..+. -.....+++|+|                ||+ +++++. .++.
T Consensus       292 ~~~~~~~~V~VID~~t~------------~vv~~i~-~g~~p~~i~~s~----------------Dg~~~l~v~~~~~~~  342 (373)
T 2mad_H          292 KLHAAAKEVTSVTGLVG------------QTSSQIS-LGHDVDAISVAQ----------------DGGPDLYALSAGTEV  342 (373)
T ss_pred             cccCCCCeEEEEECCCC------------EEEEEEE-CCCCcCeEEECC----------------CCCeEEEEEcCCCCe
Confidence                 357999999876            4555553 233578999999                888 777776 4899


Q ss_pred             EEEEeCCCCCCccc-ccc
Q psy988          388 IRVFLNKTKPKHSS-LPV  404 (408)
Q Consensus       388 v~iw~~~~~~~~~~-~~~  404 (408)
                      |.++|+.+++.... .++
T Consensus       343 V~ViD~~t~~vv~~i~~v  360 (373)
T 2mad_H          343 LHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             EEEEECCCCCEEeeecCC
Confidence            99999999998777 444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=2.3e-15  Score=140.49  Aligned_cols=280  Identities=12%  Similarity=0.013  Sum_probs=168.3

Q ss_pred             cCCCCCEEEEEeCCCc---EEEEecC-----CCCceeee----eecCCceeeEEEEEecCCCEEEEEecC-----CEEEE
Q psy988           31 HPRDDRYFLSGSLDGK---LRLWNIP-----DKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSYD-----GRCIF   93 (408)
Q Consensus        31 sp~~~~~l~t~~~dg~---i~iw~~~-----~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i   93 (408)
                      +| +|++++....++.   -.+|...     +++...+.    ...+|...+..++|||||++|+.++.+     ..|++
T Consensus       115 ~p-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QR-RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EE-ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             EE-ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            37 7888776665432   5555543     33332111    112344578899999999999887654     46999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe--------------EEEEEccCcccc--eeecC
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR--------------IRLYDLRDLNLS--CKYKG  157 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~~--~~~~~  157 (408)
                      ||+.+++..... ...        ..+..++|+|| +.|+.+..++.              |++|++.++...  ..+..
T Consensus       194 ~dl~tg~~~~~~-~~~--------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~  263 (741)
T 1yr2_A          194 VGVADGKPLADE-LKW--------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT  263 (741)
T ss_dssp             EETTTCCEEEEE-EEE--------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             EECCCCCCCCcc-CCC--------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence            999998764321 111        12357899999 99988876543              899999776532  22333


Q ss_pred             ccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      ......+..+.|+|||++|+..+.++     .|++||+.++...          ....+..+....... ++|+      
T Consensus       264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~l~~~~~~~~~~-~~~d------  326 (741)
T 1yr2_A          264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG----------PVTALIPDLKAQWDF-VDGV------  326 (741)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC----------CCEEEECSSSSCEEE-EEEE------
T ss_pred             CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc----------ccEEecCCCCceEEE-Eecc------
Confidence            22222366789999999988877544     8999998654111          001111111111111 1244      


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----CCeEEEEEcCCC--eeeeEEeeccceeceeEEEEcCCC
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDL--NLSCKYKGYVNVSSQIKASFSHDG  306 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~s~~~  306 (408)
                                                   ++.|+..+.    ++.|.+||+.++  +....+..+..  .+..++++ ++
T Consensus       327 -----------------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~--~l~~~~~~-~~  374 (741)
T 1yr2_A          327 -----------------------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD--NLESVGIA-GN  374 (741)
T ss_dssp             -----------------------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS--EEEEEEEE-BT
T ss_pred             -----------------------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC--eEEEEEEE-CC
Confidence                                         444444433    466999999874  33333333322  35567777 56


Q ss_pred             CEEEEecCCceEEEeeccccCccccccccCccccceeeee-eccceEEEEecCCchhhhhccCCCCCCCcccEEE-E---
Q psy988          307 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV-S---  381 (408)
Q Consensus       307 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s---  381 (408)
                      .++++...|+..+||.+....           .....+.. +.+.+..+.++|                +++.|+ +   
T Consensus       375 ~lv~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~~~v~~~~~s~----------------d~~~l~~~~ss  427 (741)
T 1yr2_A          375 RLFASYIHDAKSQVLAFDLDG-----------KPAGAVSLPGIGSASGLSGRP----------------GDRHAYLSFSS  427 (741)
T ss_dssp             EEEEEEEETTEEEEEEEETTS-----------CEEEECBCSSSCEEEEEECCB----------------TCSCEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEEeCCC-----------CceeeccCCCCeEEEEeecCC----------------CCCEEEEEEcC
Confidence            677888889988887665210           22233333 356788999999                666444 2   


Q ss_pred             EecCCeEEEEeCCCCC
Q psy988          382 ADFNGVIRVFLNKTKP  397 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~~  397 (408)
                      ....++|++||+.+++
T Consensus       428 ~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          428 FTQPATVLALDPATAK  443 (741)
T ss_dssp             TTEEEEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCCc
Confidence            2345899999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=1.1e-14  Score=118.39  Aligned_cols=254  Identities=12%  Similarity=0.076  Sum_probs=169.5

Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      .++.|++++.++.|.+||.++++....+....       ...+.++.+.|+|+.++  +.++.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT-------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            46789999999999999998998776654311       12578889999998888  34678999999 7888887775


Q ss_pred             ccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  236 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  236 (408)
                      ... ..+.++.+.++|+++++.+. ++.+..+|.. ++..                      ..+.+....         
T Consensus        74 ~~~-~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l----------------------~~~~~~~~~---------  120 (276)
T 3no2_A           74 PAG-CEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVL----------------------SKTEFETGI---------  120 (276)
T ss_dssp             CTT-CEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEE----------------------EEEEECCSC---------
T ss_pred             CCC-ccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEE----------------------EEEeccCCC---------
Confidence            321 23567889999999998876 6777766642 2111                      111110000         


Q ss_pred             CCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          237 DKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                                ..+...+..+++.++|+++++...++.|..||.. |+.+.++....   ....+...++|++++++..++
T Consensus       121 ----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~  186 (276)
T 3no2_A          121 ----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDAH  186 (276)
T ss_dssp             ----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS---CCCEEEECTTSCEEEECBTTS
T ss_pred             ----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC---CccceeEcCCCCEEEEeCCCC
Confidence                      0111123455678889999999999999999988 99888887642   344678889999999999888


Q ss_pred             eEEEeeccccCccccccccCccccceeeeee------ccceEEEEecCCchhhhhccCCCC----CCCcccEEEEEecCC
Q psy988          317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH------NAVVTCAVFAPCPELIIAQMEPDK----SESTGYVLVSADFNG  386 (408)
Q Consensus       317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~~~~----~s~~~~~l~s~~~dg  386 (408)
                      .|..+|..+++.            +-.+..+      ...+..++..++|..+++......    .+.+++.+. -+.||
T Consensus       187 ~v~~~d~~tG~~------------~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~-~~~~g  253 (276)
T 3no2_A          187 CFVQLNLESNRI------------VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVE-IDSEG  253 (276)
T ss_dssp             EEEEECTTTCCE------------EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEE-ECTTS
T ss_pred             eEEEEeCcCCcE------------EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEE-ECCCC
Confidence            999999987733            2222211      123678888886555555432110    001223333 34467


Q ss_pred             eEEEEeCCCCCCcccc
Q psy988          387 VIRVFLNKTKPKHSSL  402 (408)
Q Consensus       387 ~v~iw~~~~~~~~~~~  402 (408)
                      .+ +|.+...+...++
T Consensus       254 ~~-~W~~~~~~~~~~~  268 (276)
T 3no2_A          254 KV-VWQLNDKVKFGMI  268 (276)
T ss_dssp             BE-EEEECCTTTSCCC
T ss_pred             CE-EEEecCcccccce
Confidence            66 7887777666544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=2.5e-15  Score=122.69  Aligned_cols=240  Identities=7%  Similarity=0.037  Sum_probs=159.0

Q ss_pred             ceEEEEEcCCCCCEEE-EEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee
Q psy988           24 FVTAICFHPRDDRYFL-SGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH  102 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  102 (408)
                      ...+++++| ++++++ +...++.|.+|+..+.....  ....+...+.++++.++|+++++.. ++.|.+||..+....
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTV--LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EE--CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccce--EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            788999999 888777 54678999999976654331  1123335678899999998666555 889999998765432


Q ss_pred             EEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988          103 TQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                      . .   .    ......+.++++.++++.+++...++.|.+|+..+.......  ......+..++++++|+.+++...+
T Consensus       101 ~-~---~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~  170 (270)
T 1rwi_B          101 V-L---P----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGNVYVTDTDN  170 (270)
T ss_dssp             E-C---C----CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred             e-e---e----cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCCEEEEECCC
Confidence            1 1   0    011246889999999986666667789999976554332211  1122235678999999877666667


Q ss_pred             ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988          183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE  262 (408)
Q Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (408)
                      +.|.+||.........            ..                                   .....+..++++++|
T Consensus       171 ~~i~~~~~~~~~~~~~------------~~-----------------------------------~~~~~p~~i~~d~~g  203 (270)
T 1rwi_B          171 NRVVKLEAESNNQVVL------------PF-----------------------------------TDITAPWGIAVDEAG  203 (270)
T ss_dssp             TEEEEECTTTCCEEEC------------CC-----------------------------------SSCCSEEEEEECTTC
T ss_pred             CEEEEEecCCCceEee------------cc-----------------------------------cCCCCceEEEECCCC
Confidence            8999998754211100            00                                   011335566677777


Q ss_pred             CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          263 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       263 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ..+++...++.|.+||........ .. ..+...+..++++++|+++++...++.|+++++...
T Consensus       204 ~l~v~~~~~~~v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          204 TVYVTEHNTNQVVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CEEEEETTTSCEEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CEEEEECCCCcEEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            666777778899999987654322 21 112235778999999998888889999999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.73  E-value=3.8e-14  Score=117.59  Aligned_cols=282  Identities=11%  Similarity=-0.003  Sum_probs=184.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      ....+.++.+.+ +++++++...++.|.+|+.. ++... ..+..+...+..+++.++|...++...++.|..+|.. ++
T Consensus        18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            356789999999 88887777678999999987 55442 2333344678999999999877776668899999987 43


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                      .. .....      .....+.++++.++++.+++...++.|..+|.. ++.. .+........+..+++.++++..++..
T Consensus        94 ~~-~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A           94 FT-EYPLP------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             EE-EEECS------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred             eE-EecCC------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEec
Confidence            32 11111      112468899999988877766667899999987 5443 222221223467889999998666655


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      .++.|..+|.. +....                       +.. +                      .....+..+++.+
T Consensus       165 ~~~~i~~~~~~-g~~~~-----------------------~~~-~----------------------~~~~~~~~i~~d~  197 (300)
T 2qc5_A          165 QNNSIGRITNT-GKLEE-----------------------YPL-P----------------------TNAAAPVGITSGN  197 (300)
T ss_dssp             TTTEEEEECTT-CCEEE-----------------------EEC-S----------------------STTCCEEEEEECT
T ss_pred             CCCeEEEECCC-CcEEE-----------------------eeC-C----------------------CCCCCcceEEECC
Confidence            57788888862 21100                       000 0                      1122455666677


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcccc
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  340 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  340 (408)
                      ++..+++....+.|.+||. +++... +........+..++++++|++.++...++.|..|+.. +..           .
T Consensus       198 ~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-----------~  263 (300)
T 2qc5_A          198 DGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI-----------Q  263 (300)
T ss_dssp             TSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-----------E
T ss_pred             CCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE-----------E
Confidence            7766666666788999998 454433 2222223357789999999977777677899999974 211           0


Q ss_pred             ceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          341 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       341 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ...+......+.++++.+                +|+++++.. . .|..++..
T Consensus       264 ~~~~~~~~~~~~~i~~~~----------------~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          264 EYQLQTENAEPHGITFGK----------------DGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEECCSTTCCCCCEEECT----------------TSCEEEECS-S-EEEEEEEC
T ss_pred             EEECCccCCccceeEeCC----------------CCCEEEEcc-C-ceEEeCCC
Confidence            011122335578899999                888777665 4 67666653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=2.1e-14  Score=116.78  Aligned_cols=183  Identities=9%  Similarity=0.043  Sum_probs=139.7

Q ss_pred             CceEEEEeccCCeeEeEEE-eC-CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC-ceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HI-DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-TKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~-~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~   78 (408)
                      |+.|.+||.++++.+..+. +. ..+.++.++| +|++|+  +.++.|..||. +++.+  ..+..+ ...+.++.+.++
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~--W~~~~~~~~~~~~~~~~~d   87 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGREL--WNIAAPAGCEMQTARILPD   87 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEE--EEEECCTTCEEEEEEECTT
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEE--EEEcCCCCccccccEECCC
Confidence            7899999999999999988 44 4799999999 999888  34788999998 67655  445443 356888999999


Q ss_pred             CCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           79 GKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        79 ~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      |+++++.+. ++.+..++. +++..........  ...+......+.+.++++++++...++.|..||.+ ++.+..+..
T Consensus        88 G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~  163 (276)
T 3no2_A           88 GNALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL  163 (276)
T ss_dssp             SCEEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence            999999887 788888886 4555544443221  11111245566788999999999999999999998 888887765


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeee
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  197 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  197 (408)
                      ..   .+..+...++|+.++++..++.|..+|..+++...
T Consensus       164 ~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          164 SG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             SS---CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred             CC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence            42   24457788999999998888899999987665443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.72  E-value=9e-15  Score=124.60  Aligned_cols=270  Identities=10%  Similarity=-0.004  Sum_probs=173.2

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecCC-----c
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEGQ-----T   67 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-----~   67 (408)
                      +.|.+.|..+++.+..+.-...- .+.++| |+++|+++.          .++.|.++|..+.+......+.+.     .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            78999999999999999843334 899999 888887775          367899999999887632233200     1


Q ss_pred             eeeEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCCCeEEEE
Q psy988           68 KLITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSNDSRIRLY  144 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~  144 (408)
                      .....+.|+|||++++++..  ++.|.+.|+.+.+....+....          .  ....|++ ..+++.+.||.+.+.
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----------~--~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----------C--YHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------E--EEEEEEETTEEEEEETTSSEEEE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----------c--eeeccCCCcEEEEEcCCCCEEEE
Confidence            23457789999999999874  5799999999998776654311          1  1223333 445555677777777


Q ss_pred             EccCccccee----ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeeccc-CCCccccccccccceEE
Q psy988          145 DLRDLNLSCK----YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR-DRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       145 d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~  219 (408)
                      +..+++....    +...... ....+.+.+++..++.....+.+.+.|............. ....... .........
T Consensus       245 ~~~~~~v~~~~~~~~~v~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~-~g~~p~g~~  322 (426)
T 3c75_H          245 DFADGETKVTNTEVFHTEDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA-DDWRPGGWQ  322 (426)
T ss_dssp             ECCTTCCEEEECCCCSCTTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG-GTEEECSSS
T ss_pred             ECCCCcEEEEeeeeeccCCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc-cccccCCce
Confidence            7755544321    1111111 1123567899888877778899999998654322110000 0000000 000000011


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec----------CCCeEEEEEcCCCeeeeEEe
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDLNLSCKYK  289 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~  289 (408)
                      .++++|++                                   +.+++..          .++.|.++|..+.+.+..+.
T Consensus       323 ~va~s~dg-----------------------------------~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~  367 (426)
T 3c75_H          323 QTAYHRQS-----------------------------------DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE  367 (426)
T ss_dssp             CEEEEGGG-----------------------------------TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eeEEcCCC-----------------------------------CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence            13444444                                   4444432          23579999999999998887


Q ss_pred             eccceeceeEEEEcCCCC-EEEEec-CCceEEEeecccc
Q psy988          290 GYVNVSSQIKASFSHDGK-YIVSGS-ENQCIYIWKTHHD  326 (408)
Q Consensus       290 ~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~  326 (408)
                      ...   ....+.|+|||+ ++++.. .++.|.++|+.+.
T Consensus       368 vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          368 LGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            533   356899999999 888877 5899999999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.72  E-value=6e-15  Score=125.69  Aligned_cols=287  Identities=9%  Similarity=0.035  Sum_probs=184.8

Q ss_pred             CCCEEEEEeC-C----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cCCEEEEEeccC
Q psy988           34 DDRYFLSGSL-D----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YDGRCIFYTTDQ   98 (408)
Q Consensus        34 ~~~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~   98 (408)
                      +++.+++... +    +.|.++|..+.+..  ..+..-..+  .+.++|||++++++.          .++.|.++|..+
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv--~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRIL--GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEE--EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            6666665554 2    69999999998877  344433334  899999999998886          367899999999


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCccccccceEEEEecCC-CE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KY  175 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  175 (408)
                      .+....+...... ..........+.++||+++++++..  ++.|.+.|+.+++.+..+.....      ....|++ ..
T Consensus       159 ~~vv~~I~v~g~~-r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------~~~~p~g~~~  231 (426)
T 3c75_H          159 FLPIADIELPDAP-RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------YHIFPASPTV  231 (426)
T ss_dssp             CCEEEEEEETTCC-CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------EEEEEEETTE
T ss_pred             CcEEEEEECCCcc-ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------eeeccCCCcE
Confidence            9877766542100 0001124567899999999999864  57899999999988777654211      2233433 45


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      +++.+.||.+.+.+...+...... .       .            .+..                      ........
T Consensus       232 ~v~~~~dG~~~~V~~~~~~v~~~~-~-------~------------~~~v----------------------~~~p~~~~  269 (426)
T 3c75_H          232 FYMNCRDGSLARVDFADGETKVTN-T-------E------------VFHT----------------------EDELLINH  269 (426)
T ss_dssp             EEEEETTSSEEEEECCTTCCEEEE-C-------C------------CCSC----------------------TTSCBCSC
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEe-e-------e------------eecc----------------------CCCceeeE
Confidence            566667777777776322111000 0       0            0000                      00000112


Q ss_pred             eccCCCCCeEEEecCCCeEEEEEcCCCeee--eEEeec--------cceeceeEEEEcCCCCEEEEecC----------C
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYKGY--------VNVSSQIKASFSHDGKYIVSGSE----------N  315 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~----------d  315 (408)
                      +.+.+++..++..+..+.+.+.|.......  ..+...        ........++++|+++.+++...          +
T Consensus       270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred             eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence            345677777777677889999998754422  111100        00111223689999998777542          3


Q ss_pred             ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCeEEEEeC
Q psy988          316 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGVIRVFLN  393 (408)
Q Consensus       316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~  393 (408)
                      +.|.++|..+.            +.+..+..- ....+++|+|                ||+ +|+++. .++.|.++|+
T Consensus       350 ~~VsVID~~T~------------kvv~~I~vg-~~P~gia~sp----------------Dg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          350 RFVVVLNAETG------------ERINKIELG-HEIDSINVSQ----------------DAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEEEETTTC------------CEEEEEEEE-EEECEEEECC----------------SSSCEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCC------------eEEEEEECC-CCcCeEEEcc----------------CCCEEEEEEcCCCCeEEEEEC
Confidence            57999999886            455555422 2478999999                888 888877 5999999999


Q ss_pred             CCCCCcccc
Q psy988          394 KTKPKHSSL  402 (408)
Q Consensus       394 ~~~~~~~~~  402 (408)
                      .+++....+
T Consensus       401 ~t~kvv~tI  409 (426)
T 3c75_H          401 ATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999988775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=1.1e-13  Score=115.73  Aligned_cols=247  Identities=13%  Similarity=0.136  Sum_probs=153.6

Q ss_pred             ceeeEEEEEecCCCEEEE-------EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           67 TKLITAANFCENGKFAVV-------GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      -....+++|+++|..+++       ...++.|.+|+..+++..... .   .....+...+.++++++++..+++++..+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~---~~~~~~~~~~~~i~~~~~~g~l~v~~~~~   92 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K---PEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE-C---CEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e---cccCCCCCCCceEEEecCCCcEEEEECCC
Confidence            345678999999987777       578899999998776643211 1   00011234688999999834455555555


Q ss_pred             eEEEEEccCccccee-ecCc--cccccceEEEEecCCCEEEEeecC---------------ceEEEeeeccceeeeeecc
Q psy988          140 RIRLYDLRDLNLSCK-YKGY--VNVSSQIKASFSHDGKYIVSGSEN---------------QCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~  201 (408)
                      .|.+||.. ++.... ....  .....+..++++++|+.+++...+               +.|..||.. +...     
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----  165 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-----  165 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-----
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-----
Confidence            79999988 654332 2111  112346789999999877766554               455555542 1100     


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC----CCCCeE-EEecCCCeEEE
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM----PGEDKI-LVTSNDSRIRL  276 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l-~~~~~d~~i~i  276 (408)
                              .+......                                   +..++++    |+++.+ ++...++.|.+
T Consensus       166 --------~~~~~~~~-----------------------------------~~~i~~~~~~d~dg~~l~v~~~~~~~i~~  202 (314)
T 1pjx_A          166 --------QVDTAFQF-----------------------------------PNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             --------EEEEEESS-----------------------------------EEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             --------EeccCCCC-----------------------------------cceEEEecccCCCCCEEEEEECCCCeEEE
Confidence                    00001111                                   2334444    555444 44466789999


Q ss_pred             EEcC-CCeeee--EEeecc-ce-eceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccce
Q psy988          277 YDLR-DLNLSC--KYKGYV-NV-SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  351 (408)
Q Consensus       277 ~d~~-~~~~~~--~~~~~~-~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  351 (408)
                      ||.. +++...  .+.... .. ..+..++++++|+++++...++.|.+|+..++            +.+..+..+...+
T Consensus       203 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g------------~~~~~~~~~~~~~  270 (314)
T 1pjx_A          203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG------------QPKMRIRCPFEKP  270 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB------------SCSEEEECSSSCE
T ss_pred             EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC------------cEeEEEeCCCCCc
Confidence            9986 444211  111111 11 24567999999998888777889999998754            2334444555778


Q ss_pred             EEEEecCCchhhhhccCCCCCCCccc-EEEEEecCCeEEEEeCCC
Q psy988          352 TCAVFAPCPELIIAQMEPDKSESTGY-VLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iw~~~~  395 (408)
                      .+++|+|                +++ ++++...++.|..|++..
T Consensus       271 ~~i~~~~----------------dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          271 SNLHFKP----------------QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECT----------------TSSEEEEEETTTTEEEEEECSS
T ss_pred             eeEEECC----------------CCCEEEEEeCCCCeEEEEeCCC
Confidence            9999999                888 555556678999999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=1.3e-12  Score=108.29  Aligned_cols=259  Identities=9%  Similarity=-0.032  Sum_probs=169.2

Q ss_pred             CceEEEEeccCCeeEeEE-E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCF-Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ++.|.+||.. ++..... . +...+.++++++ ++.++++...++.|..|+.. ++... ..+......+..+++.++|
T Consensus        35 ~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~~~~~g  110 (299)
T 2z2n_A           35 ANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKE-YTLPNPDSAPYGITEGPNG  110 (299)
T ss_dssp             TTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS
T ss_pred             CCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEE-EeCCCcCCCceeeEECCCC
Confidence            4678888887 5543322 1 457799999999 88888877768899999986 43322 2223345578999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      .++++...++.|..||. +++... ...      ......+..+++.+++...++...++.|..||. +++... +....
T Consensus       111 ~l~v~~~~~~~i~~~d~-~g~~~~-~~~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~  180 (299)
T 2z2n_A          111 DIWFTEMNGNRIGRITD-DGKIRE-YEL------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPT  180 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEE-EEC------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSS
T ss_pred             CEEEEecCCceEEEECC-CCCEEE-ecC------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCC
Confidence            88887777889999998 433221 111      112346889999999877666666789999998 655433 21112


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ....+..++++++|+.+++...++.|..||. ++....                       +.                 
T Consensus       181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-----------------------~~-----------------  219 (299)
T 2z2n_A          181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-----------------------FK-----------------  219 (299)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-----------------------EE-----------------
T ss_pred             CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-----------------------EE-----------------
Confidence            2234667899999987666666788999987 321100                       00                 


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                            .......+.+++++++|+.+++...++.|..||. +++. ..+........+.++++ ++|++.++.. .+.+.
T Consensus       220 ------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~  289 (299)
T 2z2n_A          220 ------IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG  289 (299)
T ss_dssp             ------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred             ------CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence                  0012234556667777776666667889999998 4543 33332222346778889 8888777765 56677


Q ss_pred             Eeeccc
Q psy988          320 IWKTHH  325 (408)
Q Consensus       320 iw~~~~  325 (408)
                      .++..+
T Consensus       290 ~~~~~~  295 (299)
T 2z2n_A          290 KLTLIK  295 (299)
T ss_dssp             EEEEC-
T ss_pred             EEEcCc
Confidence            777655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=3.8e-14  Score=119.66  Aligned_cols=270  Identities=11%  Similarity=0.079  Sum_probs=164.3

Q ss_pred             CceEEEEEcCCCCCEEEEEeC--CCcEEEEecCCCCceeee----eecCCceeeEEEEEecCCCEEEEEec-----CCEE
Q psy988           23 DFVTAICFHPRDDRYFLSGSL--DGKLRLWNIPDKKVAVWN----EVEGQTKLITAANFCENGKFAVVGSY-----DGRC   91 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i   91 (408)
                      ..+..++++| +++++++...  ++.++||.+.+++...+.    ....+-..+..++++++|+++++-..     ++.|
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            7899999999 8998888642  343666666544432111    11234567999999999886665544     5799


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-e---CCCeEEEEEccCcccceeecCccccccceEE
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-S---NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA  167 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  167 (408)
                      .+||+.+++....+.....  ...+...+..+++++++..++.+ .   .++.|.+||+.+++....+..+.....- ..
T Consensus        96 ~~~d~~tg~~~~~~~~~~~--~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~-~~  172 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPP--ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE-DI  172 (343)
T ss_dssp             EEEETTTTEEEEEEECCTT--TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC-SC
T ss_pred             EEEECCCCeEEEEEECChh--hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc-cc
Confidence            9999998875554433211  11223457889999876666555 3   5789999999988766555442211100 13


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      .+.++|..+.+.+.++.+..|..                          .+..++                         
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~--------------------------~~~gia-------------------------  201 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHL--------------------------GVNGIV-------------------------  201 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCC--------------------------CEEEEE-------------------------
T ss_pred             ceeECCEEEEeccCCCceeceec--------------------------ccceeE-------------------------
Confidence            45567766666667776655532                          123344                         


Q ss_pred             CCCceeeeeccCCCCCeEEEecCCC-eEEEEEcC---CCe-----eee--EEeeccceeceeEEEEcCCCCEEEEecCCc
Q psy988          248 ATGRKISGIEPMPGEDKILVTSNDS-RIRLYDLR---DLN-----LSC--KYKGYVNVSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                                ++|+++.|+++..++ .+..++..   .+.     ...  ...++..  ....++++++|+++++...++
T Consensus       202 ----------~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g--~pdgia~d~~G~l~va~~~~~  269 (343)
T 2qe8_A          202 ----------LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP--ICDGISIDKDHNIYVGDLAHS  269 (343)
T ss_dssp             ----------ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC--SCSCEEECTTCCEEEEEGGGT
T ss_pred             ----------eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC--CCceEEECCCCCEEEEccCCC
Confidence                      455555555554443 55555532   111     000  1111111  344689999999999988899


Q ss_pred             eEEEeeccccCccccccccCccccceeeee--eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeE
Q psy988          317 CIYIWKTHHDYAKFSSVRRDRNDFWEGIKA--HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVI  388 (408)
Q Consensus       317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  388 (408)
                      .|.+|+..++            +. ..+..  +.....+++|.+                +++++++.+..+.+
T Consensus       270 ~V~~~d~~~G------------~~-~~~~~~~~~~~p~~va~~~----------------~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          270 AIGVITSADR------------AY-KLLVTDEKLSWTDSFNFGS----------------DGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEEEEETTTT------------EE-EEEEECGGGSCEEEEEECT----------------TSCEEEEECCGGGS
T ss_pred             eEEEEECCCC------------CE-EEEEECCceecCCeeEECC----------------CCcEEEEeCccccc
Confidence            9999998433            11 11111  234578999999                77777777654444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.66  E-value=2.5e-13  Score=113.43  Aligned_cols=251  Identities=10%  Similarity=0.114  Sum_probs=160.2

Q ss_pred             eCCceEEEEEcCCCCCEEEE-------EeCCCcEEEEecCCCCceeeee--ecCCceeeEEEEEecC-CCEEEEEecCCE
Q psy988           21 HIDFVTAICFHPRDDRYFLS-------GSLDGKLRLWNIPDKKVAVWNE--VEGQTKLITAANFCEN-GKFAVVGSYDGR   90 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~   90 (408)
                      .-....+++|++ ++.++++       +..++.|.+|+..+++......  ..++...+..++++++ |+++++ +..+.
T Consensus        16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~   93 (314)
T 1pjx_A           16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG   93 (314)
T ss_dssp             CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred             cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence            445678999998 8888887       5778999999988877643211  0124567899999999 664444 44557


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---------------CeEEEEEccCcccceee
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---------------SRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~  155 (408)
                      |.+||.+ ++... .. ... ........+.++++.++++.+++...+               +.|..||.. ++.....
T Consensus        94 l~~~d~~-g~~~~-~~-~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           94 LLVVQTD-GTFEE-IA-KKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             EEEEETT-SCEEE-CC-SBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             EEEEeCC-CCEEE-EE-ecc-CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            9999987 44321 10 110 011122458899999999777666544               567777765 4433222


Q ss_pred             cCccccccceEEEEe----cCCCEEEEe-ecCceEEEeeecc-ceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          156 KGYVNVSSQIKASFS----HDGKYIVSG-SENQCIYIWKTHH-DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      . .  ......++++    ++++.++.+ ..++.|.+||... +.....       .....+.                 
T Consensus       169 ~-~--~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~-----------------  221 (314)
T 1pjx_A          169 T-A--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIP-----------------  221 (314)
T ss_dssp             E-E--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECC-----------------
T ss_pred             c-C--CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECC-----------------
Confidence            1 1  1224568899    999766655 4578999999752 110000       0000000                 


Q ss_pred             eeeecCCCCCCCceeeecCCC-ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988          230 IIAQMEPDKSESTGYVLNATG-RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  308 (408)
                                        .+. ..+..++++++|+.+++...++.|.+||..+++....+..+.  ..+.+++|+|+|+.
T Consensus       222 ------------------~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~  281 (314)
T 1pjx_A          222 ------------------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKT  281 (314)
T ss_dssp             ------------------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSE
T ss_pred             ------------------CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCE
Confidence                              111 334566777777777777778899999998777766665443  36788999999995


Q ss_pred             EE-EecCCceEEEeeccc
Q psy988          309 IV-SGSENQCIYIWKTHH  325 (408)
Q Consensus       309 l~-~~~~dg~i~iw~~~~  325 (408)
                      |+ +...++.|..|++..
T Consensus       282 l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          282 IFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTTEEEEEECSS
T ss_pred             EEEEeCCCCeEEEEeCCC
Confidence            54 555678999999865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=8.6e-14  Score=129.97  Aligned_cols=248  Identities=10%  Similarity=0.010  Sum_probs=154.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCE-----
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR-----   90 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----   90 (408)
                      |...+..++||| ||++||.++.+     ..|++||+.+++...   ...+...+..++|+|| +.|+.++.++.     
T Consensus       161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~---~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLA---DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEE---EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCC---ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence            334688999999 99999887654     359999999998653   1112223467899999 99988877654     


Q ss_pred             ---------EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCc--cccee
Q psy988           91 ---------CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDL--NLSCK  154 (408)
Q Consensus        91 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~  154 (408)
                               |.+|++.+...........    ..+...+..+.|+|||++|+..+.+     ..|++||+.++  +....
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFAT----PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEecc----CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                     8899987665322221111    1122357889999999999887654     38999999876  31334


Q ss_pred             ecCccccccceEEEEecCCCEEEEeecC----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGSEN----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      +..+...  .... ++|+|+.|+..+.+    +.|.+||+.++....          ...+..+...+..+.+.      
T Consensus       312 l~~~~~~--~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~----------~~l~~~~~~~l~~~~~~------  372 (741)
T 1yr2_A          312 LIPDLKA--QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF----------DTVVPESKDNLESVGIA------  372 (741)
T ss_dssp             EECSSSS--CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEE----------EEEECCCSSEEEEEEEE------
T ss_pred             ecCCCCc--eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcccc----------EEEecCCCCeEEEEEEE------
Confidence            4333322  2223 45889888877653    458888876421000          01111122223333333      


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcC-CCeeeeEEeeccceeceeEEEEcCCCCEE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR-DLNLSCKYKGYVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  309 (408)
                                                    ++..+++...|+..+||.+. +++....+..+ ....+..+.++|+++.|
T Consensus       373 ------------------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l  421 (741)
T 1yr2_A          373 ------------------------------GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP-GIGSASGLSGRPGDRHA  421 (741)
T ss_dssp             ------------------------------BTEEEEEEEETTEEEEEEEETTSCEEEECBCS-SSCEEEEEECCBTCSCE
T ss_pred             ------------------------------CCEEEEEEEECCEEEEEEEeCCCCceeeccCC-CCeEEEEeecCCCCCEE
Confidence                                          23446667778877776554 35555554432 23357788999999877


Q ss_pred             E----EecCCceEEEeeccccC
Q psy988          310 V----SGSENQCIYIWKTHHDY  327 (408)
Q Consensus       310 ~----~~~~dg~i~iw~~~~~~  327 (408)
                      +    +....+.|++||+.++.
T Consensus       422 ~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          422 YLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEcCCCCCCEEEEEECCCCc
Confidence            6    33446899999997753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=8e-13  Score=113.88  Aligned_cols=256  Identities=13%  Similarity=0.140  Sum_probs=163.0

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC--EEEEEeccCCe
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG--RCIFYTTDQLK  100 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~  100 (408)
                      .....|+|+| +++++++...++.|++||.+++....  ..... .... ++|+++++.|+++..++  .|.+++.....
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~--~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTT--VHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEE--EEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEE--eeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            4678999999 88888887778999999998877653  22222 2233 89999999999888766  78888887654


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccccee----ecCccccccce-EEEEecC-CC
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK----YKGYVNVSSQI-KASFSHD-GK  174 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~-~~~~~~~-~~  174 (408)
                      ......  ...  ......+.+++++|++..|+++..++.|+.||..++.....    ..+... .... .++|+|+ +.
T Consensus       206 ~~~~~g--~~~--~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~-~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          206 APTRIG--QLG--STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG-TNPGPYLIYYFVDSN  280 (409)
T ss_dssp             CEEEEE--ECC--TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC-CSSCCEEEEETTTTE
T ss_pred             eeEEee--ecc--chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC-CCccccEEEeCCCCE
Confidence            322221  100  11234678899999666777777788999999987653222    111111 1123 7999995 54


Q ss_pred             EEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceee
Q psy988          175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKIS  254 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (408)
                      .+++-..++.|+.|+.......              +.++..        ..+            ..........-..+.
T Consensus       281 lyv~d~~~~~I~~~~~~g~~~~--------------~~g~~~--------~~g------------~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGECEW--------------FCGSAT--------QKT------------VQDGLREEALFAQPN  326 (409)
T ss_dssp             EEEEETTTTEEEEECTTCCEEE--------------EEECTT--------CCS------------CBCEEGGGCBCSSEE
T ss_pred             EEEEeCCCCEEEEEecCCCEEE--------------EEeCCC--------CCC------------cCCCcccccEeCCCe
Confidence            4555556788998886432100              000000        000            000000001123467


Q ss_pred             eeccCCCCCeEEEec-CCCeEEEEEcCCCeeeeEEeecc-------------ceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988          255 GIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYV-------------NVSSQIKASFSHDGKYIVSGSENQCIYI  320 (408)
Q Consensus       255 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i  320 (408)
                      .++++|+|+++++-. .++.|+.||+.+++.. .+.++.             .......++++++|.++++-..++.|+.
T Consensus       327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             EEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence            888999998777777 8899999998877643 333320             0134678999999888888888888888


Q ss_pred             eec
Q psy988          321 WKT  323 (408)
Q Consensus       321 w~~  323 (408)
                      +++
T Consensus       406 i~~  408 (409)
T 3hrp_A          406 YAV  408 (409)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=4.9e-12  Score=104.77  Aligned_cols=257  Identities=11%  Similarity=-0.035  Sum_probs=165.8

Q ss_pred             CceEEEEeccCCeeEeEE-E-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCF-Q-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ++.|.+||.. ++..... . +...+.++++.+ +++++++...++.|..||.. ++... ..+......+..+++.++|
T Consensus        40 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~-~~~~~~~~~~~~i~~~~~g  115 (300)
T 2qc5_A           40 ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTE-YPLPQPDSGPYGITEGLNG  115 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECSTT
T ss_pred             CCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEE-ecCCCCCCCCccceECCCC
Confidence            4678888877 5544321 1 346799999999 88877777667889999987 55432 2333344678999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      +++++...++.|..++.+ ++.. ....      ......+.++++.++++..++...++.|..+|. +++... +....
T Consensus       116 ~l~v~~~~~~~i~~~~~~-g~~~-~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~  185 (300)
T 2qc5_A          116 DIWFTQLNGDRIGKLTAD-GTIY-EYDL------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT  185 (300)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEE-EEEC------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS
T ss_pred             CEEEEccCCCeEEEECCC-CCEE-EccC------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC
Confidence            887777668899999987 4332 1111      112346889999999985555555788999998 554432 32222


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ....+..++++++|+..++....+.|..||.. +.....           ...                           
T Consensus       186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~-----------~~~---------------------------  226 (300)
T 2qc5_A          186 NAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISEY-----------DIP---------------------------  226 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEE-----------ECS---------------------------
T ss_pred             CCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEEE-----------ECC---------------------------
Confidence            22346788999999766666666789988862 110000           000                           


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                              .....+.+++++++|+.+++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|.
T Consensus       227 --------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~  294 (300)
T 2qc5_A          227 --------TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIG  294 (300)
T ss_dssp             --------STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred             --------CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence                    11223456666777776666666789999998 44433 332222233567889999998776655 4 666


Q ss_pred             Eeec
Q psy988          320 IWKT  323 (408)
Q Consensus       320 iw~~  323 (408)
                      .++.
T Consensus       295 ~~~p  298 (300)
T 2qc5_A          295 KLNL  298 (300)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            6664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=2.7e-12  Score=106.04  Aligned_cols=237  Identities=11%  Similarity=0.026  Sum_probs=149.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      +..--.+..|+|+++.++++...++.|..||..++....   + .....+.+++++++|+++++ . ++.|.+||.++++
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            334456889999556667777778999999998876532   2 23456899999999995554 3 6789999998776


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---------CCeEEEEEccC-cccceeecCccccccceEEEEe
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---------DSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      ........    .......+..++++|+|+.+++...         ...-.+|.+.. ++... +..  .......++|+
T Consensus        85 ~~~~~~~~----~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~--~~~~pngi~~s  157 (297)
T 3g4e_A           85 AVVLATVD----NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFD--QVDISNGLDWS  157 (297)
T ss_dssp             EEEEEECC----TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEE--EESBEEEEEEC
T ss_pred             EEEEEecC----CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eee--ccccccceEEc
Confidence            43222111    0111245789999999986655422         12334554442 23222 211  12235679999


Q ss_pred             cCCCEEEEe-ecCceEEEeeec--cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          171 HDGKYIVSG-SENQCIYIWKTH--HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       171 ~~~~~l~~~-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      |+++.|+.+ +.++.|..|++.  ++.....       ..+..+                                   .
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-------~~~~~~-----------------------------------~  195 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-------RSVYKL-----------------------------------E  195 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-------EEEEEC-----------------------------------C
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCc-------EEEEEC-----------------------------------C
Confidence            999877554 457889999873  2110000       000000                                   0


Q ss_pred             CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEecC
Q psy988          248 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGSE  314 (408)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  314 (408)
                      .....+..++++++|++.++...++.|.+||..+++.+..+..+..  .+++++|. |+++.|++.+.
T Consensus       196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~--~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD--KTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS--BEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC--CceEEEEeCCCCCEEEEEcC
Confidence            1123455667777777677777788999999998998888876533  67899998 88887765543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.61  E-value=3.5e-14  Score=119.07  Aligned_cols=281  Identities=8%  Similarity=-0.024  Sum_probs=167.5

Q ss_pred             eEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecCC-----c
Q psy988            4 TVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEGQ-----T   67 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-----~   67 (408)
                      +|.+.|..+++.+..+. -..+  .+.++| |+++++++.          .++.|.+||..+++......+.+.     .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            78899999999999997 3344  799999 888888876          368899999999987732222210     1


Q ss_pred             eeeEEEEEecCCCEEEEEec--CCEEEE--EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEE
Q psy988           68 KLITAANFCENGKFAVVGSY--DGRCIF--YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIR  142 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~  142 (408)
                      .....+.++|||++++++..  ...+.+  +|..+   ...+...         +.   ..+.|+++. +++.+.||.+.
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~---------~~---~~~~p~g~~~~~~~~~dg~~~  188 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA---------SC---FHIHPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS---------SC---CCCEEEETTEEECCCCTTSCE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC---------Cc---eEEccCCCeEEEEEcCCCCEE
Confidence            23567899999999999875  467888  88877   2222110         01   223344443 34456788888


Q ss_pred             EEEccC-----cccceeec--CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccccc
Q psy988          143 LYDLRD-----LNLSCKYK--GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  215 (408)
Q Consensus       143 i~d~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                      +.|+++     ++......  ...... ..  . .+++..++..+. +.+.+.|.........          ..+....
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~-P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~----------~~~~~~~  253 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQ-AA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK----------AAIDGNE  253 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSC-CE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEE----------CCCCSSC
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCC-cc--c-cccCCEEEEEcC-CEEEEEECCCCcceEE----------EEEEecc
Confidence            888876     44321110  011111 11  3 666666666656 8899999854221110          0000000


Q ss_pred             ceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---------CCeEEEEEcCCCeeee
Q psy988          216 AVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---------DSRIRLYDLRDLNLSC  286 (408)
Q Consensus       216 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~  286 (408)
                      .......+.|                         .....++++|+++.++++..         ++.+.++|+.+++.+.
T Consensus       254 ~~~~~~~~~p-------------------------~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~  308 (368)
T 1mda_H          254 SGRKADNFRS-------------------------AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             THHHHTTEEE-------------------------CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cccccccccc-------------------------CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence            0000000000                         00011345555555555422         2356699999999888


Q ss_pred             EEeeccceeceeEEEEcCCCCE-EEEec-CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          287 KYKGYVNVSSQIKASFSHDGKY-IVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       287 ~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      .+....   ....++|+|||++ +++.. .++.|.++|+.+.            +.+..+..... -..+++.+
T Consensus       309 ~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~------------kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          309 PISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD------------QDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             CCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC------------EEEEECCCCSC-CCEEECCC
T ss_pred             EEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC------------cEEEEEECCCC-CCEEEeec
Confidence            776533   3568999999985 45555 5899999999987            45555543332 34555543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=1.4e-12  Score=108.21  Aligned_cols=238  Identities=10%  Similarity=0.024  Sum_probs=152.7

Q ss_pred             EeEEEeCCceEEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           16 LCCFQHIDFVTAICFHPRDDR-YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        16 ~~~~~h~~~v~~~~~sp~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      ..............|+| +++ ++++...++.|..|+. +++..   .+..+...+..++++++|+++++...++.|.+|
T Consensus        38 ~~l~~~~~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTVD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             EEEECCCSSEEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCEE---EEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEEecCCcCccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCEE---EEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            33344666788999999 777 6677777899999998 44433   344455678999999999966665566899999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEE----eeC-------------CCeEEEEEccCcccceeecC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILV----TSN-------------DSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~  157 (408)
                      +.+ ++......  ....  .....+..+++.|+|+..++    +..             .+.|..+|..+++.....  
T Consensus       113 ~~~-g~~~~~~~--~~~~--~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--  185 (305)
T 3dr2_A          113 DAD-GQAHLLVG--RYAG--KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--  185 (305)
T ss_dssp             CTT-SCEEEEEC--EETT--EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred             CCC-CCEEEEEe--ccCC--CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence            986 33221111  1111  11235678999999987775    332             256788887666654332  


Q ss_pred             ccccccceEEEEecCCCEEEEeecC------ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                        .......++|+|+++.|+.+...      +.|+.|++..+. . ..                ..    .+.       
T Consensus       186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l-~~----------------~~----~~~-------  234 (305)
T 3dr2_A          186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L-HD----------------RR----HFA-------  234 (305)
T ss_dssp             --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E-EE----------------EE----EEE-------
T ss_pred             --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c-cC----------------Ce----EEE-------
Confidence              12335678999999988877665      689999875421 0 00                00    000       


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  311 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  311 (408)
                                     ......+..++++++|++.+ ++.+ .|.+|+. +++.+..+....   .+.+++|+|+++.|..
T Consensus       235 ---------------~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~i  293 (305)
T 3dr2_A          235 ---------------SVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFI  293 (305)
T ss_dssp             ---------------CCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEE
T ss_pred             ---------------ECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEE
Confidence                           00112344567778888444 4444 4999997 466666666433   4678999999998888


Q ss_pred             ecCCce
Q psy988          312 GSENQC  317 (408)
Q Consensus       312 ~~~dg~  317 (408)
                      ++.++.
T Consensus       294 t~~~~l  299 (305)
T 3dr2_A          294 TGGPCL  299 (305)
T ss_dssp             EETTEE
T ss_pred             EcCCeE
Confidence            776643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=3.8e-12  Score=109.64  Aligned_cols=243  Identities=9%  Similarity=0.026  Sum_probs=156.7

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC--eEEEEE
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS--RIRLYD  145 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d  145 (408)
                      .....++|+++++++++...++.|++||.++.........         ..... ++|+|+++.|+++..++  .|.+++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---------CCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence            3578999999999777777779999999987765433221         11233 89999999999887755  799999


Q ss_pred             ccCcccceeec--CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          146 LRDLNLSCKYK--GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       146 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ...+.....+.  .......+..++++|++..|+++..++.|+.||..+..........        ..+..        
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--------~~g~~--------  264 (409)
T 3hrp_A          201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--------LSGSL--------  264 (409)
T ss_dssp             GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--------CCSCC--------
T ss_pred             cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--------ccCCC--------
Confidence            87655433330  0101233567899995556666777889999998643211000000        00000        


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceee-eeccCCC-CCeEEEecCCCeEEEEEcCCCeeeeEEeecc---------
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKIS-GIEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYV---------  292 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------  292 (408)
                                                ...+. .++|+|+ +.++++-..++.|+.|+....  ...+.+..         
T Consensus       265 --------------------------~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~  316 (409)
T 3hrp_A          265 --------------------------GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGL  316 (409)
T ss_dssp             --------------------------CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEE
T ss_pred             --------------------------CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCc
Confidence                                      00011 5666664 444555567788999987643  23333321         


Q ss_pred             ----ceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccceeeeee---------------ccceE
Q psy988          293 ----NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH---------------NAVVT  352 (408)
Q Consensus       293 ----~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~  352 (408)
                          .......++++|+|+++++-. .++.|+.|++.++.             +..+.++               -....
T Consensus       317 ~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-------------v~~~~g~~~~~g~~~g~~~~~~~~~P~  383 (409)
T 3hrp_A          317 REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-------------VSTVAGQVDVASQIDGTPLEATFNYPY  383 (409)
T ss_dssp             GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-------------EEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred             ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-------------EEEEeCCCCCCCcCCCChhceEeCCce
Confidence                012467899999999888877 88999999976542             2222222               24578


Q ss_pred             EEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          353 CAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      .+++++                +|.++++-..+++|+.+++
T Consensus       384 giavd~----------------~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          384 DICYDG----------------EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEECS----------------SSEEEEEESTTCEEEEEEE
T ss_pred             EEEEcC----------------CCCEEEEECCCCeEEEEEe
Confidence            899999                8888888888899998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.59  E-value=4.9e-13  Score=123.74  Aligned_cols=244  Identities=10%  Similarity=0.082  Sum_probs=149.6

Q ss_pred             CCceeeEEEEEecCCCEEEEEe-----cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           65 GQTKLITAANFCENGKFAVVGS-----YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        65 ~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      +|...+..++|||||++||.+.     ....|++||+.+++..... ...        .....++|+ |++.|+.++.+.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~--------~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD--------VKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE--------EESCCCEEE-TTTEEEEEESSC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC--------ceeccEEEe-CCCEEEEEEecC
Confidence            3556788999999999988543     2357999999998754331 111        013567899 999999987764


Q ss_pred             -------------eEEEEEccCcccc--eeecCcc-ccccceEEEEecCCCEEEEeec----CceEEEeeeccceeeeee
Q psy988          140 -------------RIRLYDLRDLNLS--CKYKGYV-NVSSQIKASFSHDGKYIVSGSE----NQCIYIWKTHHDYAKFSS  199 (408)
Q Consensus       140 -------------~i~i~d~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~  199 (408)
                                   .|++|++.+....  ..+.... .......+.++|||++|+....    ...|+++|+.++...   
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~---  272 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP---  272 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC---
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc---
Confidence                         3999999876532  2233322 2233567899999999865543    248899998653211   


Q ss_pred             cccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC---CCeEEE
Q psy988          200 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN---DSRIRL  276 (408)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i  276 (408)
                              ...+..+....... +++++..+                                  ++....   .+.|..
T Consensus       273 --------~~~l~~~~~~~~~~-~~~~g~~l----------------------------------~~~t~~~~~~~~l~~  309 (693)
T 3iuj_A          273 --------LLTVQGDLDADVSL-VDNKGSTL----------------------------------YLLTNRDAPNRRLVT  309 (693)
T ss_dssp             --------CEEEECSSSSCEEE-EEEETTEE----------------------------------EEEECTTCTTCEEEE
T ss_pred             --------eEEEeCCCCceEEE-EeccCCEE----------------------------------EEEECCCCCCCEEEE
Confidence                    11122222222222 34444333                                  222222   368999


Q ss_pred             EEcCCCee--eeEEeeccceeceeEEEEcCCCCEEEEecC-Cc--eEEEeeccccCccccccccCccccceeee-eeccc
Q psy988          277 YDLRDLNL--SCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQ--CIYIWKTHHDYAKFSSVRRDRNDFWEGIK-AHNAV  350 (408)
Q Consensus       277 ~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~  350 (408)
                      +|+.++..  ...+..+..  .+.  .|++++++|+.... ++  .|++|++..+             ....+. ...+.
T Consensus       310 ~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-------------~~~~l~~p~~~~  372 (693)
T 3iuj_A          310 VDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-------------RVREVALPGLGS  372 (693)
T ss_dssp             EETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-------------EEEEECCSSSSE
T ss_pred             EeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-------------eeEEeecCCCce
Confidence            99987654  234444433  333  89999998877654 43  6888888753             112222 23455


Q ss_pred             eEEEEecCCchhhhhccCCCCCCCcccEEEEEecC----CeEEEEeCCCCC
Q psy988          351 VTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN----GVIRVFLNKTKP  397 (408)
Q Consensus       351 v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~  397 (408)
                      +..+.++|                ++..|+....+    +.|..||+.+++
T Consensus       373 ~~~~~~~~----------------d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          373 VSGFNGKH----------------DDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEECCCCT----------------TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEeeecCC----------------CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            77778888                55555544333    789999987765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.58  E-value=1.7e-11  Score=101.26  Aligned_cols=222  Identities=8%  Similarity=0.021  Sum_probs=138.2

Q ss_pred             CceeeEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988           66 QTKLITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        66 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  144 (408)
                      ...-..+..|++++ .++++...++.|..||..+..... ..         ....+.+++++++++ ++++. ++.|.+|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---------~~~~~~~i~~~~dG~-l~v~~-~~~l~~~   78 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT---------MDAPVSSVALRQSGG-YVATI-GTKFCAL   78 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE---------CSSCEEEEEEBTTSS-EEEEE-TTEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee---------CCCceEEEEECCCCC-EEEEE-CCeEEEE
Confidence            33445678899964 555666678999999998765421 11         124789999999998 44444 5689999


Q ss_pred             EccCcccceeecCc--cccccceEEEEecCCCEEEEeecC---------ceEEEeeeccceeeeeecccCCCcccccccc
Q psy988          145 DLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSEN---------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  213 (408)
Q Consensus       145 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      |..+++........  .....+..++++|+|+++++....         ..-.+|.+...                    
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------------------  138 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--------------------  138 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------------------
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--------------------
Confidence            99877653322211  122346678999999866544321         12233333211                    


Q ss_pred             ccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-EecCCCeEEEEEc--CCCeee--eEE
Q psy988          214 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-VTSNDSRIRLYDL--RDLNLS--CKY  288 (408)
Q Consensus       214 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~--~~~  288 (408)
                                   +....              ..........++|+|+++.++ +.+.++.|.+||+  .++...  ..+
T Consensus       139 -------------g~~~~--------------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          139 -------------HHVKK--------------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             -------------SCEEE--------------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             -------------CCEEE--------------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence                         00000              000112245667777777654 4466789999997  455432  122


Q ss_pred             eec-cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEec-C
Q psy988          289 KGY-VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-P  358 (408)
Q Consensus       289 ~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~  358 (408)
                      ... ........++++++|++.++....+.|..||..++            +.+..+..+...+++++|. |
T Consensus       192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG------------~~~~~i~~p~~~~t~~~f~g~  251 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG------------KRLQTVKLPVDKTTSCCFGGK  251 (297)
T ss_dssp             EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC------------CEEEEEECSSSBEEEEEEESG
T ss_pred             EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc------------eEEEEEECCCCCceEEEEeCC
Confidence            111 11234568899999998888777889999999866            4566666666789999998 7

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.55  E-value=3e-12  Score=107.42  Aligned_cols=264  Identities=6%  Similarity=-0.109  Sum_probs=163.9

Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee----------CCCeEEEEEccCcccceeecCcc
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      .|.++|..+.+....+....        .+  .+.++|++++++++.          .++.|.+||+.+++.+..+....
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECCCCeEEEEEeCCC--------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            88999999998877665432        23  799999999999986          36889999999999888875321


Q ss_pred             c-----cccceEEEEecCCCEEEEeec--CceEEE--eeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          160 N-----VSSQIKASFSHDGKYIVSGSE--NQCIYI--WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       160 ~-----~~~~~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      .     ......++++|||++++++..  +..+.+  +|..+ ....   ...  .+.........  .-+.++++++.+
T Consensus       117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i---~v~--~~~~~~p~g~~--~~~~~~~dg~~~  188 (368)
T 1mda_H          117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLT---KSA--SCFHIHPGAAA--THYLGSCPASLA  188 (368)
T ss_dssp             SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEE---ECS--SCCCCEEEETT--EEECCCCTTSCE
T ss_pred             ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEE---ECC--CceEEccCCCe--EEEEEcCCCCEE
Confidence            0     012446899999999998864  457888  99876 1111   100  01111111111  123556666665


Q ss_pred             eeecCC----CCCCCce--eeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeec------c--ce
Q psy988          231 IAQMEP----DKSESTG--YVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGY------V--NV  294 (408)
Q Consensus       231 ~~~~~~----~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~------~--~~  294 (408)
                      ......    .......  ..+.....+.   . ++++..++..+. +.+.+.|..+..  ....+...      .  ..
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            554433    1100000  0111111222   2 556666666666 899999986532  22222110      0  01


Q ss_pred             eceeEEEEcCCCCEEEEecC---------CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhh
Q psy988          295 SSQIKASFSHDGKYIVSGSE---------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  365 (408)
Q Consensus       295 ~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  365 (408)
                      .....++++||++.++++..         ++.+.++|+.+.            +.+..+.... ...+++|+|       
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------------~vv~~i~vg~-~p~gi~~s~-------  323 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISNGH-DSDAIIAAQ-------  323 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEEEE-EECEEEECC-------
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC------------eEEEEEECCC-CcceEEECC-------
Confidence            11122689999998887543         235669999886            4555555333 578999999       


Q ss_pred             ccCCCCCCCccc-EEEEEe-cCCeEEEEeCCCCCCccccccc
Q psy988          366 QMEPDKSESTGY-VLVSAD-FNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       366 ~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                               ||+ ++++.. .++.|.++|+.+++....+++.
T Consensus       324 ---------Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          324 ---------DGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             ---------SSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ---------CCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence                     886 566666 5999999999999988887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=7.6e-13  Score=111.24  Aligned_cols=184  Identities=7%  Similarity=0.052  Sum_probs=130.6

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---------ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK---------VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      .++.+++++ ...++++|+.+ .+.+|+++...         ... .....+.. |+.++|  ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            689999999 88899999987 56669875432         221 12223556 999999  89999998 88999999


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      |+.+........        .+...+.++.+.+.  .+++++.||.|.+||+.++....      ....+.+++|+|+| 
T Consensus       112 dv~sl~~~~~~~--------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          112 DLEELSEFRTVT--------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             ESSSTTCEEEEE--------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE-
T ss_pred             EchhhhccCccc--------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc-
Confidence            998876433322        12245777777654  38888999999999999776543      12358899999999 


Q ss_pred             EEEEeecCceEEEeeecccee--eeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          175 YIVSGSENQCIYIWKTHHDYA--KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                       ++.|..||.+++|+......  +....+.   ..+..-..|...|.++.|.+++.++++...
T Consensus       175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~P---p~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             -EEEEETTSCEEEEEEETTEEEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             -eEEEEcCCcEEEEcCCCccccccceecCC---cccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence             77889999999998876542  2111111   001111136788999999999998876443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.54  E-value=7.2e-11  Score=101.13  Aligned_cols=296  Identities=9%  Similarity=0.031  Sum_probs=174.9

Q ss_pred             CceEEEEeccCCeeEeEEEe----------CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeE
Q psy988            2 DKTVRLWHISRKECLCCFQH----------IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLIT   71 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h----------~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~   71 (408)
                      ++.|..+|.++++.+-.+..          ...+.+.-..  ++..++.++.++.|..+|.++++..-...+...  ...
T Consensus        62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~  137 (376)
T 3q7m_A           62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALS  137 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCS
T ss_pred             CCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEc
Confidence            57899999999998877663          2333332222  345678888899999999999986532222221  111


Q ss_pred             EEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc
Q psy988           72 AANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL  151 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  151 (408)
                      ....  .+..++.++.++.+..+|..+++..............   ........  .+..+++++.++.|..+|..+++.
T Consensus       138 ~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~  210 (376)
T 3q7m_A          138 RPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL---RGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQM  210 (376)
T ss_dssp             CCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCE
T ss_pred             CCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee---cCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcE
Confidence            1112  2457888889999999999988876654432110000   00011111  245788888899999999999987


Q ss_pred             ceeecCcccccc-----ceEEEEe--cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          152 SCKYKGYVNVSS-----QIKASFS--HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       152 ~~~~~~~~~~~~-----~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      +...........     +..+...  ..+..+++++.++.+..+|.+++.......              ......+.. 
T Consensus       211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--------------~~~~~~~~~-  275 (376)
T 3q7m_A          211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--------------LGSVNDFIV-  275 (376)
T ss_dssp             EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--------------CCCEEEEEE-
T ss_pred             EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--------------CCCCCCceE-
Confidence            765543211000     0000011  134567788888999999987664432210              000111111 


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  304 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~  304 (408)
                                                          ++..+++++.++.+..+|..+++..-........ .......  
T Consensus       276 ------------------------------------~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~--  316 (376)
T 3q7m_A          276 ------------------------------------DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-LLTSPVL--  316 (376)
T ss_dssp             ------------------------------------ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-CCCCCEE--
T ss_pred             ------------------------------------ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-cccCCEE--
Confidence                                                2445677788899999999999887665522111 1112222  


Q ss_pred             CCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEE-EEecCCchhhhhccCCCCCCCcccEEEEEe
Q psy988          305 DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC-AVFAPCPELIIAQMEPDKSESTGYVLVSAD  383 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  383 (408)
                      .+..|++++.+|.++++|..+++            .+.........+.+ ...                  .+..|..++
T Consensus       317 ~~~~l~v~~~~g~l~~~d~~tG~------------~~~~~~~~~~~~~~~~~~------------------~~~~l~v~~  366 (376)
T 3q7m_A          317 YNGNLVVGDSEGYLHWINVEDGR------------FVAQQKVDSSGFQTEPVA------------------ADGKLLIQA  366 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC------------EEEEEECCTTCBCSCCEE------------------ETTEEEEEB
T ss_pred             ECCEEEEEeCCCeEEEEECCCCc------------EEEEEecCCCcceeCCEE------------------ECCEEEEEe
Confidence            35688888999999999998873            22222221222221 122                  234677788


Q ss_pred             cCCeEEEEe
Q psy988          384 FNGVIRVFL  392 (408)
Q Consensus       384 ~dg~v~iw~  392 (408)
                      .||.|..|+
T Consensus       367 ~~G~l~~~~  375 (376)
T 3q7m_A          367 KDGTVYSIT  375 (376)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCEEEEEe
Confidence            899999987

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.53  E-value=2.3e-11  Score=101.74  Aligned_cols=230  Identities=11%  Similarity=0.034  Sum_probs=142.8

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  103 (408)
                      -.....|+|+++.++++...++.|..||..+++...   +. ....+.++.|+++|+++++. . ..|.+||..+++...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV---HA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE---EE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence            356789999446666777778999999998876442   22 23568999999999877754 3 459999988766432


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                      ..   ... .......+.+++++|+++.+++...      .+.|..++  +++... +..  .......++|+|+++.++
T Consensus       124 ~~---~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~--~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          124 HA---ELE-SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA--DISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             EE---CSS-TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE--EESSEEEEEECTTSCEEE
T ss_pred             Ee---eCC-CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC--CCcccCCeEEcCCCCEEE
Confidence            11   111 0111236889999999986655432      24555555  444322 211  112345789999998776


Q ss_pred             Ee-ecCceEEEeeec--cc-eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          178 SG-SENQCIYIWKTH--HD-YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       178 ~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      .+ ..++.|.+||+.  ++ ....       ...+..+                                   ......+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~-------~~~~~~~-----------------------------------~~~~~~p  232 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGK-------AEVFIDS-----------------------------------TGIKGGM  232 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSC-------CEEEEEC-----------------------------------TTSSSEE
T ss_pred             EEECCCCEEEEEEcccccCCcccC-------ceEEEEC-----------------------------------CCCCCCC
Confidence            55 446789999975  21 1000       0000000                                   0112234


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEEec
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVSGS  313 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  313 (408)
                      ..++++++|.+.++...++.|.+||. +++....+..+..  .+.+++|+ |+++.|++++
T Consensus       233 ~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~--~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          233 DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEE
T ss_pred             CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC--CcEEEEEecCCCCEEEEEe
Confidence            55667777776666666788999998 5666666654432  57899998 8888776544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.53  E-value=2.2e-12  Score=119.31  Aligned_cols=246  Identities=13%  Similarity=0.159  Sum_probs=148.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEE-----eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC------
Q psy988           21 HIDFVTAICFHPRDDRYFLSG-----SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG------   89 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------   89 (408)
                      |...+..++||| ||++||-+     +....|++||+.+++.... .+.  ......++|+ ||+.|+.++.+.      
T Consensus       127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence            445688899999 99988843     3335799999999986531 111  1123578899 999999888774      


Q ss_pred             -------EEEEEeccCCeeeEEEEEeecccccc-CCCCeEEEeeCCCCCeEEEeeC----CCeEEEEEccCcc-cceeec
Q psy988           90 -------RCIFYTTDQLKYHTQIHVRSTRGKNA-TGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDLN-LSCKYK  156 (408)
Q Consensus        90 -------~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~  156 (408)
                             .|++|++.+...........    .. +......+.|+|++++|+....    .+.|+++|+.++. ....+.
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGA----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESC----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             cccCCCcEEEEEECCCCcccceEEEec----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                   49999988765322221111    11 2234678899999998866532    3589999998764 233444


Q ss_pred             CccccccceEEEEecCCCEEEEeec----CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          157 GYVNVSSQIKASFSHDGKYIVSGSE----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      .+...  .... ++++|..|+..+.    .+.|..+|+.++..          ..++.+..+...+.  .|+++      
T Consensus       278 ~~~~~--~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----------~~~~~l~~~~~~~~--~~s~~------  336 (693)
T 3iuj_A          278 GDLDA--DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----------AHWRDLIPERQQVL--TVHSG------  336 (693)
T ss_dssp             CSSSS--CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----------GGCEEEECCCSSCE--EEEEE------
T ss_pred             CCCCc--eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----------cccEEEecCCCCEE--EEEEE------
Confidence            33322  2222 6677766655443    25788888764321          00112222222222  44444      


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI  309 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  309 (408)
                                                   +++|+... .++  .|++||+..+. ...+... ....+..+.++++++.|
T Consensus       337 -----------------------------g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p-~~~~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          337 -----------------------------SGYLFAEYMVDATARVEQFDYEGKR-VREVALP-GLGSVSGFNGKHDDPAL  385 (693)
T ss_dssp             -----------------------------TTEEEEEEEETTEEEEEEECTTSCE-EEEECCS-SSSEEEECCCCTTCSCE
T ss_pred             -----------------------------CCEEEEEEEECCeeEEEEEECCCCe-eEEeecC-CCceEEeeecCCCCCEE
Confidence                                         44444443 333  68999987543 3444322 22345677888888877


Q ss_pred             EEecCC----ceEEEeeccccC
Q psy988          310 VSGSEN----QCIYIWKTHHDY  327 (408)
Q Consensus       310 ~~~~~d----g~i~iw~~~~~~  327 (408)
                      +....+    +.++.||+.++.
T Consensus       386 ~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          386 YFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEecCCCCCCEEEEEECCCCe
Confidence            655443    789999987653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.52  E-value=9.3e-11  Score=98.82  Aligned_cols=275  Identities=9%  Similarity=0.066  Sum_probs=161.1

Q ss_pred             EEEEeccC-----CeeEeEEE--eC-CceEEEEE-----------c--CCCCCEEEE-EeCCCcEEEEecCCC--Cceee
Q psy988            5 VRLWHISR-----KECLCCFQ--HI-DFVTAICF-----------H--PRDDRYFLS-GSLDGKLRLWNIPDK--KVAVW   60 (408)
Q Consensus         5 i~vwd~~~-----~~~~~~~~--h~-~~v~~~~~-----------s--p~~~~~l~t-~~~dg~i~iw~~~~~--~~~~~   60 (408)
                      |.+-|++.     ++.+..+.  +. +....+-|           +  + ++++|+. +..++.|.++|+.+.  +....
T Consensus        45 la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~  123 (462)
T 2ece_A           45 IAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNI-ERRFLIVPGLRSSRIYIIDTKPNPREPKII  123 (462)
T ss_dssp             EEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTC-CSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred             EEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCc-cCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence            45566665     66676664  21 23444445           6  6 5666554 556889999999754  22222


Q ss_pred             eeec-------CCceeeEEEEEecCCCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC
Q psy988           61 NEVE-------GQTKLITAANFCENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP  127 (408)
Q Consensus        61 ~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  127 (408)
                      +.+.       ........+...|+| .++++..+      |.|.++|.++.+..........     ....-..+.|+|
T Consensus       124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~-----~~~~~Yd~~~~p  197 (462)
T 2ece_A          124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG-----DQYLAYDFWWNL  197 (462)
T ss_dssp             EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT-----TCCCCCCEEEET
T ss_pred             eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC-----CccccceEEECC
Confidence            3331       112245567788999 66666655      7899999999887655432211     111234577899


Q ss_pred             CCCeEEEee-------------------CCCeEEEEEccCcccceeecCccccccceEEEE--ecCCCEEEEeec-----
Q psy988          128 GEDKILVTS-------------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--SHDGKYIVSGSE-----  181 (408)
Q Consensus       128 ~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-----  181 (408)
                      +++.+++..                   ....|.+||+.+++.+.++...........+.|  +|++++++++.+     
T Consensus       198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~  277 (462)
T 2ece_A          198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD  277 (462)
T ss_dssp             TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred             CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence            999888884                   368999999998877776655322223444545  999999887764     


Q ss_pred             -CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          182 -NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       182 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                       +++|.+|....+.-..                    ...+.+.+ .+...      .......-+......+..+.+++
T Consensus       278 Lss~V~v~~~d~g~~~~--------------------~~vIdi~~-~~v~~------~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          278 LSSSIWLWFYEDGKWNA--------------------EKVIEIPA-EPLEG------NLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             CCEEEEEEEEETTEEEE--------------------EEEEEECC-EECCS------SCCGGGGGGTEECCCCCCEEECT
T ss_pred             CCceEEEEEecCCceeE--------------------EEEEeCCC-ccccc------cccccccccccCCCceeEEEECC
Confidence             5688887764321100                    00011100 00000      00000000000123467788888


Q ss_pred             CCCeEEEec-CCCeEEEEEcCC---CeeeeEEeeccc------------eeceeEEEEcCCCCEEEEec
Q psy988          261 GEDKILVTS-NDSRIRLYDLRD---LNLSCKYKGYVN------------VSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       261 ~~~~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~  313 (408)
                      ||++|+++. ..+.|.+||+..   .+++..+.....            ......+.++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            888888764 468999999863   344444433200            01245789999999999887

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=2.2e-11  Score=102.40  Aligned_cols=152  Identities=10%  Similarity=0.085  Sum_probs=114.4

Q ss_pred             eEEEEeccCCe-----------eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEE
Q psy988            4 TVRLWHISRKE-----------CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITA   72 (408)
Q Consensus         4 ~i~vwd~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~   72 (408)
                      .+++|+++..+           ......+.. |+.++|   ++++|+++ .++.|++||+.+....  .....|...+.+
T Consensus        59 ~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~--~~~~~~~~~v~~  131 (388)
T 1xip_A           59 KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLDLEELSEF--RTVTSFEKPVFQ  131 (388)
T ss_dssp             EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCE--EEEEECSSCEEE
T ss_pred             EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEEchhhhcc--Cccceeecceee
Confidence            46678765433           223445777 999999   67888888 8899999999876643  455666777888


Q ss_pred             EEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-  151 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  151 (408)
                      +.+.+.  .+++++.||.+.+||+.+.....   .         ...|.+++|+|+|  ++.|..||.+++|+...++. 
T Consensus       132 i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~---------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~  195 (388)
T 1xip_A          132 LKNVNN--TLVILNSVNDLSALDLRTKSTKQ---L---------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME  195 (388)
T ss_dssp             EEECSS--EEEEEETTSEEEEEETTTCCEEE---E---------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred             EEecCC--CEEEEECCCCEEEEEccCCcccc---c---------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence            877655  38889999999999999776532   1         1379999999999  78899999999999987764 


Q ss_pred             -ceeecC----c---cccccceEEEEecCCCEEEE
Q psy988          152 -SCKYKG----Y---VNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       152 -~~~~~~----~---~~~~~~~~~~~~~~~~~l~~  178 (408)
                       ...+..    .   .+...+.++.|.+++.++++
T Consensus       196 ~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          196 KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence             444421    1   12356889999999988876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.51  E-value=6e-11  Score=99.25  Aligned_cols=214  Identities=9%  Similarity=-0.010  Sum_probs=130.6

Q ss_pred             eEEEEEecCC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988           70 ITAANFCENG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus        70 v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      .....|+|++ ..+++...++.|..||.++++... ..         ....+.++.++|+++.+++. . ..|.+||..+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---------~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~  118 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---------LPFMGSALAKISDSKQLIAS-D-DGLFLRDTAT  118 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---------CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTT
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE---------CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCC
Confidence            4567899975 455666678899999998765321 11         12368999999998766654 4 4599999987


Q ss_pred             cccceeecCc--cccccceEEEEecCCCEEEEeec------CceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          149 LNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSE------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      ++........  .....+..++++|+|+++++...      .+.|+.++  ++...             .+....     
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-------------~~~~~~-----  178 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-------------KLFADI-----  178 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-------------EEEEEE-----
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-------------EeeCCC-----
Confidence            7653322211  11234678899999986665432      13444444  21100             000000     


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcC--CC-eee--eEEeec-cc
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLR--DL-NLS--CKYKGY-VN  293 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~--~~-~~~--~~~~~~-~~  293 (408)
                                                    .....++|+|+++.++. .+.++.|.+||+.  ++ +..  ..+... ..
T Consensus       179 ------------------------------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~  228 (326)
T 2ghs_A          179 ------------------------------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI  228 (326)
T ss_dssp             ------------------------------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             ------------------------------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC
Confidence                                          11234566666765544 4567899999986  55 321  122211 11


Q ss_pred             eeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEec-C
Q psy988          294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-P  358 (408)
Q Consensus       294 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~  358 (408)
                      ......++++++|++.++...++.|..|+.. +            +.+..+..+...+++++|+ |
T Consensus       229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g------------~~~~~i~~~~~~~~~~af~g~  281 (326)
T 2ghs_A          229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------------NHIARYEVPGKQTTCPAFIGP  281 (326)
T ss_dssp             SSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------------CEEEEEECSCSBEEEEEEEST
T ss_pred             CCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C------------CEEEEEECCCCCcEEEEEecC
Confidence            2245678999999988777667889999874 3            3444455556679999998 7

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.51  E-value=1e-11  Score=113.83  Aligned_cols=308  Identities=12%  Similarity=0.082  Sum_probs=173.4

Q ss_pred             CceEEEEeccCCeeEeEEEeCCc------------eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC-c-
Q psy988            2 DKTVRLWHISRKECLCCFQHIDF------------VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-T-   67 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~------------v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~-   67 (408)
                      ++.|.-+|..+|+.+-.+.....            -..+++   .+..++.++.|+.|..+|..+++..-  ....+ . 
T Consensus        86 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~W--~~~~~~~~  160 (677)
T 1kb0_A           86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAATGKEVW--HQNTFEGQ  160 (677)
T ss_dssp             GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEE--EEETTTTC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCCCCEEe--eecCCcCc
Confidence            46788899999999887763221            122333   34568888889999999999998763  23222 1 


Q ss_pred             ---eeeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeecccc---------------c---------
Q psy988           68 ---KLITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGK---------------N---------  114 (408)
Q Consensus        68 ---~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~---------------~---------  114 (408)
                         ..+.+.-.. .+..++.++.      +|.|+.+|..+++.............               .         
T Consensus       161 ~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~  239 (677)
T 1kb0_A          161 KGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAG  239 (677)
T ss_dssp             CSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHC
T ss_pred             CcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeC
Confidence               111111111 2345555543      69999999999988766654221100               0         


Q ss_pred             cCCCCeEEEeeCCCCCeEEEeeCCC-------------------eEEEEEccCcccceeecCccc-------cccceEEE
Q psy988          115 ATGRKISGIEPMPGEDKILVTSNDS-------------------RIRLYDLRDLNLSCKYKGYVN-------VSSQIKAS  168 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~  168 (408)
                      ........++++|++..++++..++                   .|..+|.++++.+..++...+       .....-+.
T Consensus       240 ~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~  319 (677)
T 1kb0_A          240 GGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAD  319 (677)
T ss_dssp             EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred             CCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEe
Confidence            1111223567888888888886653                   599999999998877654221       11222233


Q ss_pred             EecCC---CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE------------------------EEE
Q psy988          169 FSHDG---KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV------------------------TCA  221 (408)
Q Consensus       169 ~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------------------------~~~  221 (408)
                      ...+|   ..++.++.+|.++++|.++++........... ....+.....++                        ..+
T Consensus       320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~  398 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN-WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM  398 (677)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred             cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC-cccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence            44577   67899999999999999888765432211100 000000000000                        133


Q ss_pred             EEeCCcceeeeecCCCCCCCc-eeeec-C-------------CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeee
Q psy988          222 VFAPCPELIIAQMEPDKSEST-GYVLN-A-------------TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC  286 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  286 (408)
                      +++|+...+++.......... ...+. .             .......+...|       ....+.|..||+.+++.+-
T Consensus       399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~g~l~A~D~~tG~~~W  471 (677)
T 1kb0_A          399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK-------SKPFGRLLAWDPVAQKAAW  471 (677)
T ss_dssp             EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC-------SCCEEEEEEEETTTTEEEE
T ss_pred             eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCC-------CCCccEEEEEeCCCCcEEe
Confidence            445544444332110000000 00000 0             000000000000       0123789999999999887


Q ss_pred             EEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          287 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       287 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      .+....   ......++.++.+++.++.||.+++||..++
T Consensus       472 ~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          472 SVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             EEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence            776432   2334456678889999999999999999998

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.50  E-value=2.8e-11  Score=100.33  Aligned_cols=236  Identities=11%  Similarity=0.074  Sum_probs=140.4

Q ss_pred             eecCCceeeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           62 EVEGQTKLITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        62 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      .+...........|+|+|+ ++++...++.|..|+.. ++. .....        ....+..++++++++.+++...++.
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE--------SCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC--------CCCccceeeECCCCCEEEEECCCCE
Confidence            4444555678899999998 56666678999999884 332 11111        2246889999999986655555678


Q ss_pred             EEEEEccCcccceeecCc--cccccceEEEEecCCCEEEE----eec-------------CceEEEeeeccceeeeeecc
Q psy988          141 IRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVS----GSE-------------NQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~  201 (408)
                      |..|+.. ++........  .....+..++++++|+..++    |..             .+.|+.+|..++...     
T Consensus       109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-----  182 (305)
T 3dr2_A          109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-----  182 (305)
T ss_dssp             EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-----
T ss_pred             EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-----
Confidence            9999986 4432221111  11123556889999987775    321             134555544321100     


Q ss_pred             cCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC------CeEE
Q psy988          202 RDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND------SRIR  275 (408)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~  275 (408)
                                        .+.                          .......++|+|+++.|+++...      +.|.
T Consensus       183 ------------------~~~--------------------------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~  218 (305)
T 3dr2_A          183 ------------------RMA--------------------------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT  218 (305)
T ss_dssp             ------------------EEE--------------------------EESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred             ------------------EEe--------------------------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence                              000                          01123456677777766666544      7899


Q ss_pred             EEEcCCCeee--eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEE
Q psy988          276 LYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  353 (408)
Q Consensus       276 i~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  353 (408)
                      +|++..+...  ..+... .......++++++|++.+ +..+ .|.+|+...             +.+..+..+. .+.+
T Consensus       219 ~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~~g-------------~~~~~~~~~~-~~~~  281 (305)
T 3dr2_A          219 AFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSGT-GVCVFDSDG-------------QLLGHIPTPG-TASN  281 (305)
T ss_dssp             EEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEE-CCSS-EEEEECTTS-------------CEEEEEECSS-CCCE
T ss_pred             EEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecCC-cEEEECCCC-------------CEEEEEECCC-ceeE
Confidence            9998765411  111111 112344689999999544 4444 499998753             3444444333 5889


Q ss_pred             EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEE
Q psy988          354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRV  390 (408)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i  390 (408)
                      ++|+|                +++.|..++.++..++
T Consensus       282 ~~f~~----------------d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          282 CTFDQ----------------AQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEECT----------------TSCEEEEEETTEEEEE
T ss_pred             EEEeC----------------CCCEEEEEcCCeEEEE
Confidence            99998                8877777776654443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.46  E-value=6.4e-15  Score=125.32  Aligned_cols=223  Identities=9%  Similarity=0.015  Sum_probs=116.6

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      ++..+++++.||.|+.||..+++..  ..+..  ..+.+..+..++..+++++.||.|+.||.++++.............
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~--W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK--WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE--EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE--EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            4678999999999999999999876  33333  3455555667787888888999999999988765433321110000


Q ss_pred             ccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccc
Q psy988          114 NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  193 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (408)
                        ...+    .+. .+..+++++.++.|+.||.++++.+..+..+..      ..++|++..+++++.++.|+.||.+++
T Consensus        84 --~~sp----~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           84 --QASP----CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------DSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             --TTCS----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred             --ccCc----eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------ccccccCCEEEEEecCCEEEEEECCCC
Confidence              0011    111 355778888899999999999998776654321      345668888999999999999999765


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCC---CCeEEEecC
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPG---EDKILVTSN  270 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~  270 (408)
                      .....            +..     ..  +                              ....+.++   +..+++++.
T Consensus       151 ~~~W~------------~~~-----~~--~------------------------------~~~~~~~~~~~~~~v~~~~~  181 (369)
T 2hz6_A          151 ELRWN------------ATY-----FD--Y------------------------------AASLPEDDVDYKMSHFVSNG  181 (369)
T ss_dssp             SCCCE------------EEE-----EE--E------------------------------CCBCCCCCTTCCCCEEEEET
T ss_pred             CEEEe------------Eec-----cc--c------------------------------cCccccCCccccceEEEECC
Confidence            43221            000     00  0                              01111221   144667888


Q ss_pred             CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE----EEecCCceEEEeecccc
Q psy988          271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI----VSGSENQCIYIWKTHHD  326 (408)
Q Consensus       271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----~~~~~dg~i~iw~~~~~  326 (408)
                      +|.++.||..+++.+-.+.....  .+....++++|...    +.+  ++.++.+|..++
T Consensus       182 dg~v~a~d~~tG~~~W~~~~~~p--v~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG  237 (369)
T 2hz6_A          182 DGLVVTVDSESGDVLWIQNYASP--VVAFYVWQREGLRKVMHINVA--VETLRYLTFMSG  237 (369)
T ss_dssp             SCEEEEECTTTCCEEEEEECSSC--EEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCcEEEEecCCCc--eEEEEEecCCceEeccceeec--ccceeeeehhcC
Confidence            99999999999998776653221  12233455565432    112  345666666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.44  E-value=1e-10  Score=107.34  Aligned_cols=296  Identities=11%  Similarity=0.050  Sum_probs=172.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCce---------eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK---------LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      +..++.++.++.|.-+|..+++.+-.........         ....+.+  .+..++.++.|+.+..+|..+++.....
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            3456777778999999999988653222221110         0012222  4567888899999999999999887665


Q ss_pred             EEeeccccccCCCCeEE-EeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCcccc-----------------
Q psy988          106 HVRSTRGKNATGRKISG-IEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVNV-----------------  161 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-----------------  161 (408)
                      .......   ....+.. ...  .+..+++++.      ++.|+.+|.++++.+..+......                 
T Consensus       155 ~~~~~~~---~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          155 NTFEGQK---GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             ETTTTCC---SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             cCCcCcC---cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            4320000   0001111 011  2456666653      689999999999987665432111                 


Q ss_pred             -------------ccceEEEEecCCCEEEEeecCce-------------------EEEeeeccceeeeeecccCCCcccc
Q psy988          162 -------------SSQIKASFSHDGKYIVSGSENQC-------------------IYIWKTHHDYAKFSSVRRDRNDFWE  209 (408)
Q Consensus       162 -------------~~~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~~~  209 (408)
                                   .....+++++++..++.+..++.                   |..+|..+++.........      
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~------  303 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP------  303 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST------
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC------
Confidence                         00124678888888888876653                   5555555443332211000      


Q ss_pred             ccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC---CeEEEecCCCeEEEEEcCCCeeee
Q psy988          210 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE---DKILVTSNDSRIRLYDLRDLNLSC  286 (408)
Q Consensus       210 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~  286 (408)
                          +...                           -... ...+.-+....+|   +.++.++.+|.++++|..+|+++.
T Consensus       304 ----~d~w---------------------------d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          304 ----GDNW---------------------------DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             ----TCCS---------------------------CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             ----Cccc---------------------------cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence                0000                           0000 0001111111244   567888999999999999999877


Q ss_pred             EEeeccce---------ece------------------------eEEEEcCCCCEEEEecCC------------------
Q psy988          287 KYKGYVNV---------SSQ------------------------IKASFSHDGKYIVSGSEN------------------  315 (408)
Q Consensus       287 ~~~~~~~~---------~~v------------------------~~~~~s~~~~~l~~~~~d------------------  315 (408)
                      .+......         ..+                        ..++++|++.++++...+                  
T Consensus       352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~  431 (677)
T 1kb0_A          352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP  431 (677)
T ss_dssp             EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred             cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccc
Confidence            66522100         000                        146889988888775432                  


Q ss_pred             -------------------------ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988          316 -------------------------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       316 -------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                                               |.|..||+.+++            .+-... +..++....+..            
T Consensus       432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------------~~W~~~-~~~~~~~g~~~~------------  486 (677)
T 1kb0_A          432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------------AAWSVE-HVSPWNGGTLTT------------  486 (677)
T ss_dssp             TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------------EEEEEE-ESSSCCCCEEEE------------
T ss_pred             cccccccccccccccccccCCCCCccEEEEEeCCCCc------------EEeecC-CCCCCcCcceEe------------
Confidence                                     678888887762            221121 333344444555            


Q ss_pred             CCCCcccEEEEEecCCeEEEEeCCCCCCcccccc
Q psy988          371 KSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       371 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                          ++.+++.++.||.+++||..+++.+..+.+
T Consensus       487 ----~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          487 ----AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             ----TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ----CCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence                677888899999999999999998766654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=3.2e-10  Score=104.31  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=85.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCce----------ee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK----------LI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  103 (408)
                      +..+++++.++.|.-+|..+++.+-  .......          .+ ..+..  .+..++.++.|+.|..+|.++++...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIW--KYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEE--EECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeE--EEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence            4467777788999999999988653  2222111          00 11122  45678888999999999999998876


Q ss_pred             EEEEe-eccccccCCCCeEEEeeCC--CCCeEEEee------CCCeEEEEEccCcccceeecCcc---------------
Q psy988          104 QIHVR-STRGKNATGRKISGIEPMP--GEDKILVTS------NDSRIRLYDLRDLNLSCKYKGYV---------------  159 (408)
Q Consensus       104 ~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~---------------  159 (408)
                      ..... ....       ...+..+|  .+..+++++      .+|.|+.||.++++.+..+....               
T Consensus       146 ~~~~~~~~~~-------~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          146 SVDTRADHKR-------SYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             EEECCSCTTS-------CCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred             eecCcCCCCC-------CccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence            65532 1000       00111111  134555553      36899999999999876654210               


Q ss_pred             --------------ccccceEEEEecCCCEEEEeecCce
Q psy988          160 --------------NVSSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       160 --------------~~~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                                    ....-..++++|++..++.+..++.
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~  257 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGS  257 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCC
Confidence                          0000124678888888988887764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=7.9e-11  Score=108.29  Aligned_cols=309  Identities=13%  Similarity=0.082  Sum_probs=171.2

Q ss_pred             CceEEEEeccCCeeEeEEEeCCc-----------e-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee
Q psy988            2 DKTVRLWHISRKECLCCFQHIDF-----------V-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~-----------v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   69 (408)
                      ++.|.-+|..+|+.+-.+.....           + ..+..   .+..++.++.|+.|..+|..+++..-......+...
T Consensus        79 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~  155 (689)
T 1yiq_A           79 FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR  155 (689)
T ss_dssp             GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS
T ss_pred             CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC
Confidence            56788899999999887763211           1 11233   345688888999999999999987632222101110


Q ss_pred             eEEEEEec---CCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeeccccc-----------------------cCC
Q psy988           70 ITAANFCE---NGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGKN-----------------------ATG  117 (408)
Q Consensus        70 v~~~~~~~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----------------------~~~  117 (408)
                      ...+..+|   ++. ++.++      .+|.|..||.++++..............                       ...
T Consensus       156 ~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~  234 (689)
T 1yiq_A          156 SYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGG  234 (689)
T ss_dssp             CCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEEC
T ss_pred             CccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCC
Confidence            01111111   444 44443      3689999999999887665421100000                       011


Q ss_pred             CCeEEEeeCCCCCeEEEeeCCC-------------------eEEEEEccCcccceeecCcccc-------ccceEEEEec
Q psy988          118 RKISGIEPMPGEDKILVTSNDS-------------------RIRLYDLRDLNLSCKYKGYVNV-------SSQIKASFSH  171 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~  171 (408)
                      .....+++.|+...+++++.++                   .|..+|.++++.+..++...+.       ..........
T Consensus       235 ~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~  314 (689)
T 1yiq_A          235 TAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI  314 (689)
T ss_dssp             CCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             ccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc
Confidence            1123577888888999887765                   3999999999988776542111       1111122233


Q ss_pred             CCC---EEEEeecCceEEEeeeccceeeeeecccCCCccccc------------------cccccce-----------EE
Q psy988          172 DGK---YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG------------------IKAHNAV-----------VT  219 (408)
Q Consensus       172 ~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-----------v~  219 (408)
                      +|+   .++.++.+|.++++|.++++..........  .+..                  +......           -.
T Consensus       315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~  392 (689)
T 1yiq_A          315 DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ--SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ  392 (689)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred             CCcEEEEEEEECCCCeEEEEECCCCCEecccccccc--ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence            565   788999999999999988876532211110  0000                  0000000           01


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe------------------cCCCeEEEEEcCC
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT------------------SNDSRIRLYDLRD  281 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~~  281 (408)
                      .++++|+...+++.........   ...... .    .+.+.+..+..+                  ..+|.|..||+.+
T Consensus       393 ~~a~dp~~~~~yv~~~~~~~~~---~~~~~~-~----~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t  464 (689)
T 1yiq_A          393 PMSYNPDTGLVYIPAHIMSAYY---EHIPEA-P----KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK  464 (689)
T ss_dssp             CCEEETTTTEEEEEEEECCEEE---ECCSSC-C----CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred             cceECCCCCEEEEeccccceee---eecccc-c----cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence            1444554444333211000000   000000 0    000000000000                  1248899999999


Q ss_pred             CeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          282 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       282 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      ++.+-.++.+..   ...-.++..+.+++.|+.||.++.||..+++
T Consensus       465 G~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          465 QQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             TEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence            998887765432   2233566678899999999999999999983

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.39  E-value=3.6e-11  Score=101.01  Aligned_cols=288  Identities=15%  Similarity=0.091  Sum_probs=163.2

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ++.|..|| .+++.+.... +...+.++...+ ++. |..++.+  |..+|. +++..  ..............+.  +.
T Consensus        39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~--l~~~d~-~g~~~--~~~~~~~~~~~~~~~~--~~  108 (330)
T 3hxj_A           39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK-DGT-IYFGSDK--VYAINP-DGTEK--WRFDTKKAIVSDFTIF--ED  108 (330)
T ss_dssp             TTTTEEEC-TTSCEEESSCGGGEEEECCEETT-TTE-ECCSSCE--EEEECC-CGGGG--GGSCC-----CCEEEE--TT
T ss_pred             CCEEEEEC-CCCcEEEEEecCCCcccceEEec-CCc-EEEecCc--EEEECC-CCcEE--EEEECCCCcccCceEE--CC
Confidence            56678888 7777765544 344457777776 665 5555554  888886 44433  1222222222222333  45


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN  160 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  160 (408)
                      .+..++.++.+..+|.. ++.......        ....+.++...+++. +++++.++.|..+|.. ++....+.....
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~--------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~  177 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKT--------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA  177 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEEC--------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcC--------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence            67788889999999988 554333221        112345556665554 7777788999999998 766555543222


Q ss_pred             cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          161 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                        .+.++...+++... .++  +.+..+| .++......            .                            
T Consensus       178 --~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~------------~----------------------------  211 (330)
T 3hxj_A          178 --ITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNF------------Y----------------------------  211 (330)
T ss_dssp             --CCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEE------------C----------------------------
T ss_pred             --ceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEE------------c----------------------------
Confidence              24456666777644 444  7788888 443221110            0                            


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI  320 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  320 (408)
                             .....+.++...+++. |.+++.++.+..+|. +++....+.....  .+..+.+.+++ .|..++.+|.|..
T Consensus       212 -------~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~  279 (330)
T 3hxj_A          212 -------AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYA  279 (330)
T ss_dssp             -------CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEE
T ss_pred             -------cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEE
Confidence                   0112244455555554 445566778888874 5555555543222  22345555555 5666777888999


Q ss_pred             eeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      +|. ++            +.+.........+.++...+                +|+ |..++.+|.+++...+..+.
T Consensus       280 ~d~-~g------------~~~~~~~~~~~~~~~~~~d~----------------~g~-l~~gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          280 INP-DG------------TEKWNFETGSWIIATPVIDE----------------NGT-IYFGTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             ECT-TS------------CEEEEEECSSCCCSCCEECT----------------TCC-EEEECTTSCEEEEEC-----
T ss_pred             ECC-CC------------cEEEEEEcCCccccceEEcC----------------CCE-EEEEcCCCeEEEEecccccc
Confidence            985 33            22222222344566677766                665 45578899999988776543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.38  E-value=3.3e-09  Score=90.82  Aligned_cols=280  Identities=13%  Similarity=0.102  Sum_probs=165.0

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCC-------ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-------TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  107 (408)
                      +..+++++.++.|..+|.++++..-...+...       ...+.+. ...++..++.++.++.|..+|.++++.......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            45677888889999999999886532233211       1122221 223456788888999999999998887655433


Q ss_pred             eeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccccc---ceEEEEecCCCEEEEeecCce
Q psy988          108 RSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS---QIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       108 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~  184 (408)
                      ...    ....+    ..  .+..+++++.++.|..+|.++++.+..+........   ......  .+..++++..++.
T Consensus       132 ~~~----~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~  199 (376)
T 3q7m_A          132 AGE----ALSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGR  199 (376)
T ss_dssp             SSC----CCSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTE
T ss_pred             CCc----eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCE
Confidence            210    00111    11  255888888899999999999987766554322100   011122  2456888888999


Q ss_pred             EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC--CC
Q psy988          185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP--GE  262 (408)
Q Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  262 (408)
                      +..+|..++............       . ...+..                                +..+...|  .+
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~-------~-~~~~~~--------------------------------~~~~~~~p~~~~  239 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQAT-------G-STEIDR--------------------------------LSDVDTTPVVVN  239 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC---------------------------------------------------CCCCCCEEET
T ss_pred             EEEEECCCCcEEEEEecccCC-------C-Cccccc--------------------------------ccccCCCcEEEC
Confidence            999998776544321110000       0 000000                                00000001  24


Q ss_pred             CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccce
Q psy988          263 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       263 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                      ..+++++.++.+..+|..+++.+......    ....+..  ++..|+.++.++.|..+|..++.....           
T Consensus       240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~-----------  302 (376)
T 3q7m_A          240 GVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT-----------  302 (376)
T ss_dssp             TEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE-----------
T ss_pred             CEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe-----------
Confidence            56777788999999999999887665432    1222333  467788888899999999988742211           


Q ss_pred             eee-eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          343 GIK-AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       343 ~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                       .. .....+.....                  .+..|..++.+|.|.++|..+++.....+
T Consensus       303 -~~~~~~~~~~~~~~------------------~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          303 -QSDLLHRLLTSPVL------------------YNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             -ECTTTTSCCCCCEE------------------ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -ecccCCCcccCCEE------------------ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence             11 01111222222                  23467788889999999999988655443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.31  E-value=3.6e-10  Score=95.26  Aligned_cols=245  Identities=9%  Similarity=0.031  Sum_probs=140.9

Q ss_pred             eeeEEEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeec-cccccCCCCeEEEeeCCCCCeEEEeeC-----CC
Q psy988           68 KLITAANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRST-RGKNATGRKISGIEPMPGEDKILVTSN-----DS  139 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg  139 (408)
                      ..+..++++++|+.+++..  .++.++||.+.+++..   ..... .....+-..+.+++++++++.+++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence            5689999999999888864  2343566665543321   11110 111233457999999998765554333     57


Q ss_pred             eEEEEEccCcccceeecCcc----ccccceEEEEecCCCEEE-Eee---cCceEEEeeeccceeeeeecccCCCcccccc
Q psy988          140 RIRLYDLRDLNLSCKYKGYV----NVSSQIKASFSHDGKYIV-SGS---ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI  211 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~-~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (408)
                      .|.+||+.+++.+..+....    ....+..+++++++..++ +..   .++.|.+||+.++...            +.+
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~------------r~~  161 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA------------RVL  161 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE------------EEC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE------------EEe
Confidence            89999999888666554321    112356789998655554 443   5788999998654211            111


Q ss_pred             ccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988          212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  291 (408)
Q Consensus       212 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  291 (408)
                      ..|...      .|+                            ...+.+++..+.+.+.++.++.|..            
T Consensus       162 ~~~~~~------~~~----------------------------~~~~~~~g~~~~~~~~~g~~~~~~~------------  195 (343)
T 2qe8_A          162 QGYPGI------APE----------------------------DIDLVIDGVPVQIGQPDGTVIRPHL------------  195 (343)
T ss_dssp             TTCTTT------SCC----------------------------SCCCEETTEECBEECTTSCEECCCC------------
T ss_pred             cCCCcc------ccc----------------------------ccceeECCEEEEeccCCCceeceec------------
Confidence            111000      000                            0112223444455566666655421            


Q ss_pred             cceeceeEEEEcCCCCEEEEecCCc-eEEEeeccccCccccccccCccccce--eeeeeccceEEEEecCCchhhhhccC
Q psy988          292 VNVSSQIKASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWE--GIKAHNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                          .+..++|+|||+.|+.+..++ .++.++.......  ...  ..+...  ...++.+....+++++          
T Consensus       196 ----~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~g~~g~pdgia~d~----------  257 (343)
T 2qe8_A          196 ----GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL--QLT--DAELGSKIERYSEKPICDGISIDK----------  257 (343)
T ss_dssp             ----CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT--TCC--HHHHHTTCEEEEECCSCSCEEECT----------
T ss_pred             ----ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC--CCC--hhhhhcceEecccCCCCceEEECC----------
Confidence                234689999999998887665 4444443211000  000  001111  1224445567899999          


Q ss_pred             CCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          369 PDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                            +|+++++...++.|.+|+..+++
T Consensus       258 ------~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          258 ------DHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             ------TCCEEEEEGGGTEEEEEETTTTE
T ss_pred             ------CCCEEEEccCCCeEEEEECCCCC
Confidence                  89999999889999999984443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.31  E-value=1.7e-08  Score=85.34  Aligned_cols=202  Identities=12%  Similarity=0.037  Sum_probs=119.3

Q ss_pred             cCCCEEEE-EecCCEEEEEeccCC----eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEE
Q psy988           77 ENGKFAVV-GSYDGRCIFYTTDQL----KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYD  145 (408)
Q Consensus        77 ~~~~~l~~-~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d  145 (408)
                      +++++|+. +..+++|.++|+.+.    +....+......... .......+...|++ .++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH-CEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc-CCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            77777665 455689999999754    222222100010000 01134567788999 66665443      7899999


Q ss_pred             ccCcccceeecCcccc-ccceEEEEecCCCEEEEee-------------------cCceEEEeeeccceeeeeecccCCC
Q psy988          146 LRDLNLSCKYKGYVNV-SSQIKASFSHDGKYIVSGS-------------------ENQCIYIWKTHHDYAKFSSVRRDRN  205 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~  205 (408)
                      .++.+.+.++...... .....+.|+|+++.+++..                   ....|.+||+.+.+...        
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--------  242 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--------  242 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--------
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--------
Confidence            9999988887643222 1233477899999888884                   35789999997532111        


Q ss_pred             ccccccccc--cceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec------CCCeEEEE
Q psy988          206 DFWEGIKAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS------NDSRIRLY  277 (408)
Q Consensus       206 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~i~  277 (408)
                          .+...  ......+.                                 ++++|+++++++++      .+++|.+|
T Consensus       243 ----tI~vg~~g~~P~~i~---------------------------------f~~~Pdg~~aYV~~e~~~~~Lss~V~v~  285 (462)
T 2ece_A          243 ----SLTLGEENRMALELR---------------------------------PLHDPTKLMGFINMVVSLKDLSSSIWLW  285 (462)
T ss_dssp             ----EEESCTTEEEEEEEE---------------------------------ECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred             ----EEecCCCCCccceeE---------------------------------eeECCCCCEEEEEEeeeccCCCceEEEE
Confidence                11110  01111111                                 23466666666655      45688777


Q ss_pred             EcCCCeee--eEEeeccc----------------eeceeEEEEcCCCCEEEEecC-CceEEEeeccc
Q psy988          278 DLRDLNLS--CKYKGYVN----------------VSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHH  325 (408)
Q Consensus       278 d~~~~~~~--~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~  325 (408)
                      ....++..  +.+.....                ......+.+||||++|.++.. .+.|.+||+..
T Consensus       286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            66554321  11110000                124568899999999987765 68999999864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=3.6e-12  Score=108.40  Aligned_cols=192  Identities=8%  Similarity=0.035  Sum_probs=100.5

Q ss_pred             CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcc
Q psy988          128 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDF  207 (408)
Q Consensus       128 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (408)
                      ++..+++++.||.|+.||..+++.+..+.. .   .+.+..+..++..+++++.||.|+.||.+++......        
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~--------   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL--------   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTTCCEEEC-----CCSEEC--------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee--------
Confidence            478899999999999999999998877765 2   2333445567777888889999999998765432110        


Q ss_pred             ccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE
Q psy988          208 WEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK  287 (408)
Q Consensus       208 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  287 (408)
                          ..+...           ..                  .    ....+. ++..+++++.++.++.||..+|+.+..
T Consensus        76 ----~~~~~~-----------~~------------------~----~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           76 ----PFTIPE-----------LV------------------Q----ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             ----SCCHHH-----------HH------------------T----TCSCC------CCCCEEEEEEEEECCC-------
T ss_pred             ----eccCcc-----------cc------------------c----cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence                000000           00                  0    000001 234566778899999999999998877


Q ss_pred             EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhcc
Q psy988          288 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       288 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  367 (408)
                      +..+.      ...++|++..+++++.|+.|+.||..++...            -.+..+.  .....+.++.       
T Consensus       118 ~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------------W~~~~~~--~~~~~~~~~~-------  170 (369)
T 2hz6_A          118 LSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------------WNATYFD--YAASLPEDDV-------  170 (369)
T ss_dssp             ---------------------EEEEEEEEEEECCCSSSSSCC------------CEEEEEE--ECCBCCCCCT-------
T ss_pred             ecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEE------------EeEeccc--ccCccccCCc-------
Confidence            66532      1355678899999999999999999887322            1121111  1222233200       


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                           ..+ ..++.++.||.|+.||..+++..-..
T Consensus       171 -----~~~-~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          171 -----DYK-MSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             -----TCC-CCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             -----ccc-ceEEEECCCCEEEEEECCCCcEEEEe
Confidence                 001 45667788999999999988865443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.26  E-value=5e-10  Score=97.90  Aligned_cols=244  Identities=12%  Similarity=0.067  Sum_probs=153.5

Q ss_pred             CCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEE-e-cCCCEEEEEe------------------cCCEEE
Q psy988           34 DDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANF-C-ENGKFAVVGS------------------YDGRCI   92 (408)
Q Consensus        34 ~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~   92 (408)
                      ||++|+.... ++.|.+.|+.+.++.....+.. ...+..+++ + |+++++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            5667766655 5679999999988764334432 234677787 5 9999998884                  346899


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---------------------------------
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS---------------------------------  139 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------------------------  139 (408)
                      +.|.++.+...+.....         ....++++|+++++++++.+.                                 
T Consensus       179 vID~~t~~v~~qI~Vgg---------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG---------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             EEETTTTEEEEEEEESS---------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             EEECCCCeEEEEEEeCC---------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            99999988776665422         335577899999988887542                                 


Q ss_pred             -----eEEEEEccC--ccc-ceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccc
Q psy988          140 -----RIRLYDLRD--LNL-SCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       140 -----~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                           .|.+.|.++  ++. +..+...   ....++.++|||+++++++ .+..|.++|+.+....+             
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~-------------  313 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-------------  313 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-------------
T ss_pred             eeEECcEEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-------------
Confidence                 355666665  322 2222221   2244689999999877765 57799999997532110             


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC---------
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---------  281 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------  281 (408)
                       .+.        +.+....              .....-+..+..++|+|+|...++.-.|+.|.+||+.+         
T Consensus       314 -~~~--------l~~~~~v--------------~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          314 -YEN--------ADPRSAV--------------VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             -HSC--------CCGGGGE--------------EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             -ccc--------cCcccce--------------EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence             000        0010000              00112344567778888884445567899999999987         


Q ss_pred             -CeeeeEEeeccceec---eeEEEEcCCCCEEEEecC---Cce----------EEEeecccc
Q psy988          282 -LNLSCKYKGYVNVSS---QIKASFSHDGKYIVSGSE---NQC----------IYIWKTHHD  326 (408)
Q Consensus       282 -~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~---dg~----------i~iw~~~~~  326 (408)
                       .+.+.++..+...+.   .....++|||++|++...   |+-          -.++|+..+
T Consensus       371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence             456666665533211   123467899999998643   432          278888654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=8.8e-09  Score=94.51  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=84.2

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCCc--------eee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT--------KLI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      +..++.++.++.|.-+|..+++.+-........        ..+ ..+.+  .+..++.++.|+.|..+|..+++.....
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            345777777899999999998865222211100        000 11222  3557888889999999999999887665


Q ss_pred             EEeeccccc-cCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCccc------------------
Q psy988          106 HVRSTRGKN-ATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVN------------------  160 (408)
Q Consensus       106 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~------------------  160 (408)
                      ......... ....++    +  .+..++++..      +|.|+.+|.++++.+..+.....                  
T Consensus       144 ~~~~~~~~~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             ECSCTTSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             ccCCCCCcceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            532111000 001111    1  1446666543      58999999999998776542100                  


Q ss_pred             -----------cccceEEEEecCCCEEEEeecCce
Q psy988          161 -----------VSSQIKASFSHDGKYIVSGSENQC  184 (408)
Q Consensus       161 -----------~~~~~~~~~~~~~~~l~~~~~dg~  184 (408)
                                 ......++++++...++.+..++.
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~  252 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS  252 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence                       000113578888888888877664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.24  E-value=3.2e-09  Score=92.89  Aligned_cols=178  Identities=12%  Similarity=0.146  Sum_probs=120.0

Q ss_pred             CceEEEEeccCCeeEeEEE--eCCceEEEEE-c-CCCCCEEEEEe------------------CCCcEEEEecCCCCcee
Q psy988            2 DKTVRLWHISRKECLCCFQ--HIDFVTAICF-H-PRDDRYFLSGS------------------LDGKLRLWNIPDKKVAV   59 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~-s-p~~~~~l~t~~------------------~dg~i~iw~~~~~~~~~   59 (408)
                      ++.|.+.|+++.++...+.  ....+..+++ + | +++++++++                  .++.+.+.|.++.+...
T Consensus       111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~  189 (595)
T 1fwx_A          111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  189 (595)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence            4568999999999988665  4567889998 5 8 888888885                  24679999999876653


Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecCC---------------E-----------------------EEEEeccC--C
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYDG---------------R-----------------------CIFYTTDQ--L   99 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~-----------------------i~iw~~~~--~   99 (408)
                      .....+   ....++++|+|+++++.+.+.               .                       |.+.|..+  .
T Consensus       190 qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~  266 (595)
T 1fwx_A          190 QVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS  266 (595)
T ss_dssp             EEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred             EEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence            222222   345677999999999888653               2                       44444443  1


Q ss_pred             ee-eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccc---------eeecCccccccceEEE
Q psy988          100 KY-HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLS---------CKYKGYVNVSSQIKAS  168 (408)
Q Consensus       100 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~  168 (408)
                      +. ...+..         .....++.++|||+++++++ .+..|.++|+.+.+..         .......-......++
T Consensus       267 ~~~~~~Ipv---------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          267 SLFTRYIPI---------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             CSSEEEEEE---------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             ceeEEEEec---------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            11 111111         12567799999999988875 4789999999865310         0011111223467799


Q ss_pred             EecCCCEEEEeecCceEEEeeecc
Q psy988          169 FSHDGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      |+++|...++...|++|.+||+..
T Consensus       338 F~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          338 FDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ECCCCeEEEEEecCCcEEEEEhhH
Confidence            999994444556789999999865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.23  E-value=1.2e-06  Score=82.72  Aligned_cols=344  Identities=11%  Similarity=0.136  Sum_probs=202.4

Q ss_pred             eEEEEeccCCeeEeEEE--------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceee
Q psy988            4 TVRLWHISRKECLCCFQ--------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLI   70 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v   70 (408)
                      -|.+||..+++......        ....|.++...+ ++. |..|+.+ -|.+|+..++.........     -....|
T Consensus       236 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i  312 (795)
T 4a2l_A          236 GLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSV  312 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCE
T ss_pred             CeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcE
Confidence            46777877665543321        135699999988 776 4445555 5899998776654221111     123579


Q ss_pred             EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc
Q psy988           71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  150 (408)
                      .++...++|. |..|+.++-|..++..+...... .... .........|.++...+++ .|.+|+.++-|..||..+++
T Consensus       313 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~-~~~~-~~~~l~~~~V~~i~~d~~g-~lWiGt~~~Gl~~~~~~~~~  388 (795)
T 4a2l_A          313 RSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNI-RNIP-YKNSLSDNVVSCIVEDKDK-NLWIGTNDGGLNLYNPITQR  388 (795)
T ss_dssp             EEEEECTTSC-EEEEESSSCEEEECGGGGSSEEE-CCCT-TSSSCSCSSEEEEEECTTS-CEEEEESSSCEEEECTTTCC
T ss_pred             EEEEEeCCcC-EEEEECCCCeEEeCCCcccceEE-cCCC-CCCCCCCCeeEEEEECCCC-CEEEEECCCCeEEEcCCCCc
Confidence            9999988887 56677777789998765543211 1100 0111123568999888766 46678877779999987765


Q ss_pred             cceeecCc------cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          151 LSCKYKGY------VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       151 ~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      ........      .....+.++...++++.|.+|+.++-|..||..++....-.  ...      -......|.++...
T Consensus       389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~--~~~------~~l~~~~v~~i~~d  460 (795)
T 4a2l_A          389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN--QRN------SQLVNENVYAILPD  460 (795)
T ss_dssp             EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC--TTT------SCCSCSCEEEEEEC
T ss_pred             EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee--cCC------CCcCCCeeEEEEEC
Confidence            43322111      11244777888888875777777777999998764322110  000      00234568888888


Q ss_pred             CCcceeeeecCCC----CCCCceeeec-------CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee---
Q psy988          225 PCPELIIAQMEPD----KSESTGYVLN-------ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG---  290 (408)
Q Consensus       225 ~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---  290 (408)
                      +++...+.+...-    ........+.       .....|.++...++|...+...  +-+..||..+++.  .+..   
T Consensus       461 ~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~  536 (795)
T 4a2l_A          461 GEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILP  536 (795)
T ss_dssp             SSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSC
T ss_pred             CCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCC
Confidence            8887666543110    0111111111       1235688888898888766544  4588899877665  3321   


Q ss_pred             --ccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-eccceEEEEecCCchhhhhcc
Q psy988          291 --YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQM  367 (408)
Q Consensus       291 --~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~  367 (408)
                        ......+.++..+++|++.++.. . -+..||..+....          ......+ ....|.++...+         
T Consensus       537 ~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~----------~~~~~~gl~~~~i~~i~~d~---------  595 (795)
T 4a2l_A          537 VSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK----------RYNTTNGLPNNVVYGILEDS---------  595 (795)
T ss_dssp             SCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE----------EECGGGTCSCSCEEEEEECT---------
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE----------EeCCCCCCchhheEEEEECC---------
Confidence              11223678888899998666544 3 5778887654110          0000011 124588888888         


Q ss_pred             CCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          368 EPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       368 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                             +|++.+++  ++-|..|+..+.
T Consensus       596 -------~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          596 -------FGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             -------TSCEEEEE--TTEEEEEETTTT
T ss_pred             -------CCCEEEEc--CCceEEEcCCCC
Confidence                   77776665  344666776654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=2.1e-08  Score=92.04  Aligned_cols=307  Identities=14%  Similarity=0.113  Sum_probs=169.1

Q ss_pred             CceEEEEeccCCeeEeEEEeCCce------------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCc--
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFV------------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT--   67 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v------------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~--   67 (408)
                      ++.|.-+|..+|+.+-.+......            ..+.+   .+..++.++.|+.|..+|..+++..-........  
T Consensus        75 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~  151 (668)
T 1kv9_A           75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP  151 (668)
T ss_dssp             GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS
T ss_pred             CCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCc
Confidence            467888899999988777522211            12233   2446788888999999999999876322221110  


Q ss_pred             eeeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeeccccc-----------------------cCCC
Q psy988           68 KLITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGKN-----------------------ATGR  118 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~-----------------------~~~~  118 (408)
                      ..+.+--.-.++ .++++..      +|.|..+|.++++..............                       ....
T Consensus       152 ~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~  230 (668)
T 1kv9_A          152 YSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGT  230 (668)
T ss_dssp             CBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECC
T ss_pred             ceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCc
Confidence            111110001134 4555543      589999999999887766532100000                       0111


Q ss_pred             CeEEEeeCCCCCeEEEeeCCC-------------------eEEEEEccCcccceeecCcccc-------ccceEEEEecC
Q psy988          119 KISGIEPMPGEDKILVTSNDS-------------------RIRLYDLRDLNLSCKYKGYVNV-------SSQIKASFSHD  172 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  172 (408)
                      ....+++.|+...+++++.++                   .|..+|.++++.+..++...+.       .......+..+
T Consensus       231 ~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~  310 (668)
T 1kv9_A          231 VWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNID  310 (668)
T ss_dssp             CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred             cccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccC
Confidence            223467888888888887665                   4999999999988776542111       11222233346


Q ss_pred             CC---EEEEeecCceEEEeeeccceeeeeecccCCCccccc-cc-cccceE------------------------EEEEE
Q psy988          173 GK---YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG-IK-AHNAVV------------------------TCAVF  223 (408)
Q Consensus       173 ~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~v------------------------~~~~~  223 (408)
                      |+   .++.++.+|.++++|..+++..........  .+.. +. ....++                        ..+++
T Consensus       311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~  388 (668)
T 1kv9_A          311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKV--TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF  388 (668)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred             CcEEEEEEEECCCCEEEEEECCCCCEecccccccc--ccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence            65   688999999999999988765532111100  0000 00 000000                        01344


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC----------CCCeEE-EecCCCeEEEEEcCCCeeeeEEeecc
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP----------GEDKIL-VTSNDSRIRLYDLRDLNLSCKYKGYV  292 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~  292 (408)
                      +|+...+.+......     ..+...     ...+.+          .+...+ ....+|.|..||+.+++.+-+.....
T Consensus       389 dp~~g~~yv~~~~~~-----~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~  458 (668)
T 1kv9_A          389 NPGTGLVYIPYQEVP-----GVYRNE-----GKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT  458 (668)
T ss_dssp             ETTTTEEEEEEEECC-----EEECCC-----GGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred             CCCCCEEEEeccccc-----eEeeee-----ccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence            444333322110000     000000     000000          001111 22355899999999999887766432


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      .   .....+...+.++++++.||.++.||..+++
T Consensus       459 ~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          459 H---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             S---CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             C---CcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            2   2223445578899999999999999999873

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.21  E-value=9.3e-07  Score=83.43  Aligned_cols=353  Identities=10%  Similarity=0.067  Sum_probs=199.5

Q ss_pred             eEEEEeccCCeeEeEE--EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceeeEEEEEe
Q psy988            4 TVRLWHISRKECLCCF--QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLITAANFC   76 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~~   76 (408)
                      -|..||.++++.....  .+...|.++...+ ++.+. .|+.++-+.+||..+++........     -....|.++...
T Consensus       194 Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d  271 (795)
T 4a2l_A          194 GLYTYSITQKTFEKVIPILGTKQIQAILQQS-PTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD  271 (795)
T ss_dssp             CEEEEETTTCCEEECC----CCCEEEEEEEE-TTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC
T ss_pred             CEEEEeCCCCeEEEecCCCCCCeeEEEEEcC-CCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc
Confidence            4667777666554332  1456789998887 66644 4554445899998776554321110     123569999988


Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ++|.+. .|+.+ -|.+|+..+...... ..............|.++...++|. |.+|+.++-|..|+..+........
T Consensus       272 ~~g~lW-igt~~-Gl~~~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~  347 (795)
T 4a2l_A          272 SQNRLW-IGTFN-DLNIYHEGTDSFASY-SSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN  347 (795)
T ss_dssp             TTSCEE-EEESS-CEEEEETTTTEEEEE-CCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC
T ss_pred             CCCCEE-EEeCC-hhheEcCCCCeEEEE-ecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC
Confidence            888754 45555 588899876653221 1111011112335799999888764 6677777789999877654322111


Q ss_pred             C----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc-eee
Q psy988          157 G----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE-LII  231 (408)
Q Consensus       157 ~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  231 (408)
                      .    ......|.++...++|+ |..|+.++-|..||..++.-..-..  ....  .........|.++...+++. ..+
T Consensus       348 ~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~--~~~~--~~~~l~~~~v~~i~~d~~g~~lWi  422 (795)
T 4a2l_A          348 IPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTL--QEDE--SARGIGSNNIKAVYVDEKKSLVYI  422 (795)
T ss_dssp             CTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECC--C--------CCSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEec--CCCC--cccCCCCccEEEEEEcCCCCEEEE
Confidence            0    11123467777777776 6667777779999876542211000  0000  00001235688888888887 554


Q ss_pred             eecCCC-----CCCCceeeec-----CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee----ccceece
Q psy988          232 AQMEPD-----KSESTGYVLN-----ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG----YVNVSSQ  297 (408)
Q Consensus       232 ~~~~~~-----~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v  297 (408)
                      .+....     ........+.     .....|.++...+++...+... + -+.+||..+++.......    ......+
T Consensus       423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i  500 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQI  500 (795)
T ss_dssp             EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCE
T ss_pred             EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceE
Confidence            432111     0111111111     2345788888888887665544 4 488999887654322111    1112467


Q ss_pred             eEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc
Q psy988          298 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  377 (408)
Q Consensus       298 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~  377 (408)
                      .++...++|++.+...  +-+..|+..+....+   ....    ..-......|.++...+                +|+
T Consensus       501 ~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~---~~~~----~~~~l~~~~i~~i~~d~----------------~g~  555 (795)
T 4a2l_A          501 TTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQK---ASIL----PVSNVTKLFTNCIYEAS----------------NGI  555 (795)
T ss_dssp             EEEEECTTCCEEEEES--SCEEEEEEETTEEEE---CCCS----CSCGGGGSCEEEEEECT----------------TSC
T ss_pred             EEEEECCCCCEEEEeC--CceEEEeCCCCeEEE---ecCC----CCCCCCCCeeEEEEECC----------------CCC
Confidence            8888999998776554  458888876542100   0000    00011345688999988                777


Q ss_pred             EEEEEecCCeEEEEeCCCC
Q psy988          378 VLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       378 ~l~s~~~dg~v~iw~~~~~  396 (408)
                      +.++.. . -|..|+..+.
T Consensus       556 lWigT~-~-Gl~~~d~~~~  572 (795)
T 4a2l_A          556 IWVGTR-E-GFYCFNEKDK  572 (795)
T ss_dssp             EEEEES-S-CEEEEETTTT
T ss_pred             EEEEeC-C-CceeECCCCC
Confidence            666543 3 4777887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.21  E-value=2.8e-08  Score=82.93  Aligned_cols=247  Identities=11%  Similarity=0.000  Sum_probs=142.4

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----------------CCceeeEEEEEec-CCCEEEE
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----------------GQTKLITAANFCE-NGKFAVV   84 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~~   84 (408)
                      ....++++.+ ++++++++..++.|..|+..++....+....                 .....+..+++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            4567789999 8887888888899999998776544221100                 0123578899997 555 555


Q ss_pred             EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeC-----------------CCeEEEEEc
Q psy988           85 GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSN-----------------DSRIRLYDL  146 (408)
Q Consensus        85 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~  146 (408)
                      +...+.+..+|..++.......  ....  ........+++.+ +++..++-..                 ++.|..+|.
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~--~~~~--~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLAT--SVDG--VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEES--EETT--EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EECCCCEEEEeCCCCEEEEecc--cCCC--CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            5555668888876543221111  1000  1113578899999 8865555322                 367888888


Q ss_pred             cCcccceeecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      .+++.......   ......+++++++++|+.+ ...+.|..|++.....         .. ...+....          
T Consensus       173 ~~~~~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~-~~~~~~~~----------  229 (322)
T 2fp8_A          173 STKETTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GT-AEVLVKIP----------  229 (322)
T ss_dssp             TTTEEEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TC-EEEEEECS----------
T ss_pred             CCCEEEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------Cc-cceEEeCC----------
Confidence            76654322221   1224568999999877666 4567899998753210         00 00000000          


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC----------CCeEEEEEcCCCeeeeEEeeccc--
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN----------DSRIRLYDLRDLNLSCKYKGYVN--  293 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~--  293 (408)
                                               . +..+++.++|++.++...          .+.|..+|.. ++.+..+.....  
T Consensus       230 -------------------------g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~  282 (322)
T 2fp8_A          230 -------------------------N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA  282 (322)
T ss_dssp             -------------------------S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT
T ss_pred             -------------------------C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc
Confidence                                     1 334455555554444332          4567788764 666666654321  


Q ss_pred             eeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       294 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ...+..+++ .++++.++....+.|..+++...
T Consensus       283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            123555666 46666666667889999988653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=1.4e-07  Score=76.28  Aligned_cols=248  Identities=10%  Similarity=-0.038  Sum_probs=141.1

Q ss_pred             CEEEEEeCCCcEEEEecCCCCcee---eeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeecc
Q psy988           36 RYFLSGSLDGKLRLWNIPDKKVAV---WNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTR  111 (408)
Q Consensus        36 ~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~  111 (408)
                      .+|+.+.. +.|+.+++++.....   ...+......+..++|++++..|+.+. ..+.|..++.++.......   .  
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---~--   75 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---R--   75 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---C--
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE---E--
Confidence            34555554 578889987654321   011222234678999999766665544 5689999998765432111   0  


Q ss_pred             ccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec---CceEEE
Q psy988          112 GKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYI  187 (408)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i  187 (408)
                         ........+++++++..++.+. ..+.|.++++...........  .......++++|++..|+.+..   .+.|..
T Consensus        76 ---~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~  150 (267)
T 1npe_A           76 ---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (267)
T ss_dssp             ---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             ---CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC--CCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence               1113678899999777776664 467899999874332222211  1133567899997666665543   356776


Q ss_pred             eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE
Q psy988          188 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV  267 (408)
Q Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (408)
                      +++......             .+.                                  ...-.....++++|++..|+.
T Consensus       151 ~~~dg~~~~-------------~~~----------------------------------~~~~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          151 SHMDGTNRR-------------ILA----------------------------------QDNLGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             EETTSCCCE-------------EEE----------------------------------CTTCSCEEEEEEETTTTEEEE
T ss_pred             EecCCCCcE-------------EEE----------------------------------ECCCCCCcEEEEcCCCCEEEE
Confidence            665321100             000                                  001123455666665554444


Q ss_pred             -ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE-ecCCceEEEeeccccCccccccccCccccceeee
Q psy988          268 -TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  345 (408)
Q Consensus       268 -~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  345 (408)
                       -...+.|.++|.........+....   ....++..  +..|+. ....+.|..++..++            +.+..+.
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g------------~~~~~i~  246 (267)
T 1npe_A          184 VDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS------------KEMDTFH  246 (267)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEEEEEETTTT------------EEEEEEC
T ss_pred             EECCCCEEEEEecCCCceEEEecCCC---CceEEEEe--CCEEEEEECCCCeEEEEeCCCC------------CceEEEc
Confidence             4566899999987654433333221   23455554  445544 445689999998876            3344443


Q ss_pred             eec-cceEEEEecC
Q psy988          346 AHN-AVVTCAVFAP  358 (408)
Q Consensus       346 ~h~-~~v~~~~~~~  358 (408)
                      ... .....+++.|
T Consensus       247 ~g~~~~p~gi~~~~  260 (267)
T 1npe_A          247 PHKQTRLYGITIAL  260 (267)
T ss_dssp             CSSCCCCCCEEEEC
T ss_pred             cccccccceeeecC
Confidence            222 2356778877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.19  E-value=2.2e-08  Score=79.37  Aligned_cols=168  Identities=13%  Similarity=0.086  Sum_probs=112.0

Q ss_pred             CeeEeEEEeCCc--eEEEEEcCCCCCEEEEEeC--CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ec
Q psy988           13 KECLCCFQHIDF--VTAICFHPRDDRYFLSGSL--DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SY   87 (408)
Q Consensus        13 ~~~~~~~~h~~~--v~~~~~sp~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~   87 (408)
                      .+.+.++.|...  ...+.|+| ++.++++.+.  ++.|.+.|+.+++......+..+.. ...+++.  ++.|+.+ -.
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEe--CCEEEEEEec
Confidence            456677777754  58999999 7765555553  5799999999999874333333322 2244443  4455544 45


Q ss_pred             CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc---ccc
Q psy988           88 DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---SSQ  164 (408)
Q Consensus        88 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~  164 (408)
                      ++.+.++|..+.+....+...     ..   .  ...++++++.++++..++.|.++|.++.+....+.-....   ..+
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-----~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-----MK---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-----SS---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECCCCcEEEEEECC-----CC---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            789999999998877665432     01   1  1234567888888877899999999998877776543221   124


Q ss_pred             eEEEEecCCCEEEEeecCceEEEeeecccee
Q psy988          165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYA  195 (408)
Q Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  195 (408)
                      ..+.|. ++...+....++.|.+.|..++..
T Consensus       155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          155 NELEYI-NGEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTTCCE
T ss_pred             eeEEEE-CCEEEEecCCCCeEEEEECCCCcE
Confidence            467777 675444444578999999987654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.18  E-value=2.4e-08  Score=79.18  Aligned_cols=201  Identities=12%  Similarity=0.027  Sum_probs=129.0

Q ss_pred             eEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEc
Q psy988           70 ITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDL  146 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~  146 (408)
                      ...+.|++++.+.++.+.  ++.|+++|..+++.........       ......+++.  ++.|+.+. .++.+.++|.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------~~fgeGi~~~--g~~lyv~t~~~~~v~viD~   93 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------SYFGEGLTLL--NEKLYQVVWLKNIGFIYDR   93 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------TCCEEEEEEE--TTEEEEEETTCSEEEEEET
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------CcceEEEEEe--CCEEEEEEecCCEEEEEEC
Confidence            578999998754444443  5799999999998776654321       0122345554  55666665 4789999999


Q ss_pred             cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      .+.+.+..+... ...   ...+++||+.++++..++.|.++|..+......                      +.....
T Consensus        94 ~t~~v~~~i~~g-~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~----------------------I~Vg~~  147 (266)
T 2iwa_A           94 RTLSNIKNFTHQ-MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK----------------------HNVKYN  147 (266)
T ss_dssp             TTTEEEEEEECC-SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE----------------------EECEET
T ss_pred             CCCcEEEEEECC-CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE----------------------EEECCC
Confidence            999888877543 111   244677888888877788999999876432211                      110000


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-----------cee
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----------NVS  295 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~~~  295 (408)
                      ++.                    -..+..+.+. ++..++....++.|.+.|..+++.+..+....           ...
T Consensus       148 ~~p--------------------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~  206 (266)
T 2iwa_A          148 GHR--------------------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID  206 (266)
T ss_dssp             TEE--------------------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred             Ccc--------------------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence            000                    0012233333 34334555567899999999999988887421           112


Q ss_pred             ceeEEEEcCCCCEE-EEecCCceEEEeecccc
Q psy988          296 SQIKASFSHDGKYI-VSGSENQCIYIWKTHHD  326 (408)
Q Consensus       296 ~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~  326 (408)
                      ....++|+|+++.+ +++...+.+...++...
T Consensus       207 v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          207 VLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            45789999998755 55667789999888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.17  E-value=1.7e-07  Score=75.88  Aligned_cols=243  Identities=7%  Similarity=-0.009  Sum_probs=143.4

Q ss_pred             ceEEEEeccCCeeE-----eEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            3 KTVRLWHISRKECL-----CCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         3 g~i~vwd~~~~~~~-----~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      +.|+.+++......     ..+. ....+..++|+|.++.++++-..++.|..++..+....  ............+++.
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~~~p~~ia~d   87 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDLGSPEGIALD   87 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTCCCEEEEEEE
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEECCCCCccEEEEE
Confidence            46788888765421     1222 23467899999933444555555789999999876543  2222223467899999


Q ss_pred             cCCCEEEEE-ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCcccc
Q psy988           77 ENGKFAVVG-SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDLNLS  152 (408)
Q Consensus        77 ~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~  152 (408)
                      +++..|+.+ ...+.|.+++.+.......  ...      .......++++|++..|+.+..   .+.|..+++.... .
T Consensus        88 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~  158 (267)
T 1npe_A           88 HLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDT------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R  158 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEE--ECS------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred             ecCCeEEEEECCCCEEEEEEcCCCCEEEE--EEC------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence            976555554 4567999999875432111  110      1135688999997777776654   3688888876432 2


Q ss_pred             eeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          153 CKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      ..+.. ........++++++++.|+.+. ..+.|..+|.........            ...                  
T Consensus       159 ~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------------~~~------------------  207 (267)
T 1npe_A          159 RILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV------------LEG------------------  207 (267)
T ss_dssp             EEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE------------EEC------------------
T ss_pred             EEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE------------ecC------------------
Confidence            22211 1223466799999877766554 457899988753211000            000                  


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  307 (408)
                                        ...+..++.. ++..+++....+.|.++|..+++.+..+..... .....+++.|++.
T Consensus       208 ------------------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~  263 (267)
T 1npe_A          208 ------------------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQC  263 (267)
T ss_dssp             ------------------CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred             ------------------CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecCccC
Confidence                              0011223322 223344445668999999999998888764321 1244677777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.15  E-value=1.1e-07  Score=85.48  Aligned_cols=311  Identities=12%  Similarity=0.073  Sum_probs=169.5

Q ss_pred             CceEEEEec-cCCeeEeEEEeCCc------------eEEEEEcCCCCCE----EEEEeCCCcEEEEecCCCCceeeeeec
Q psy988            2 DKTVRLWHI-SRKECLCCFQHIDF------------VTAICFHPRDDRY----FLSGSLDGKLRLWNIPDKKVAVWNEVE   64 (408)
Q Consensus         2 Dg~i~vwd~-~~~~~~~~~~h~~~------------v~~~~~sp~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~   64 (408)
                      ++.|.-+|. .+|+.+-.+.....            ...++++| .+..    ++.++.|+.|.-+|..+++..-...+.
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~  150 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAETGETVWKVENS  150 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCC
Confidence            567888899 89998877763321            12356654 3334    778888999999999999876333332


Q ss_pred             CCce--eeEEEEEecCCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeecccc-----------------------
Q psy988           65 GQTK--LITAANFCENGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGK-----------------------  113 (408)
Q Consensus        65 ~~~~--~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------------------  113 (408)
                      .+..  .+.+--.-.++ .+++++      .+|.|+.+|.++++.............                       
T Consensus       151 ~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~t  229 (599)
T 1w6s_A          151 DIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGT  229 (599)
T ss_dssp             CGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHT
T ss_pred             CCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccccccccccc
Confidence            2110  11110011244 455554      379999999999988766553321100                       


Q ss_pred             ------ccCCCCe-EEEeeCCCCCeEEEeeCC----------------CeEEEEEccCcccceeecCccccc-------c
Q psy988          114 ------NATGRKI-SGIEPMPGEDKILVTSND----------------SRIRLYDLRDLNLSCKYKGYVNVS-------S  163 (408)
Q Consensus       114 ------~~~~~~v-~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~~-------~  163 (408)
                            ......+ ..+++.+....++.+..+                +.|.-+|.++++.+-.++...+..       .
T Consensus       230 w~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~  309 (599)
T 1w6s_A          230 WEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNV  309 (599)
T ss_dssp             SSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCC
T ss_pred             CCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCc
Confidence                  0000001 134556677788877654                389999999999887765433211       1


Q ss_pred             ceEEEEe-cCC---CEEEEeecCceEEEeeeccceeeeeecccC-----------CCcccccc-----ccccce------
Q psy988          164 QIKASFS-HDG---KYIVSGSENQCIYIWKTHHDYAKFSSVRRD-----------RNDFWEGI-----KAHNAV------  217 (408)
Q Consensus       164 ~~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~------  217 (408)
                      ..-+... .+|   ..++.++.+|.++++|.++++.........           ...++...     ......      
T Consensus       310 p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~  389 (599)
T 1w6s_A          310 MMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSA  389 (599)
T ss_dssp             CEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCT
T ss_pred             cEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCc
Confidence            1112222 467   467778899999999998887665432111           00000000     000000      


Q ss_pred             -----EEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCe------EEE--ec------CCCeEEEEE
Q psy988          218 -----VTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK------ILV--TS------NDSRIRLYD  278 (408)
Q Consensus       218 -----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------l~~--~~------~d~~i~i~d  278 (408)
                           -..++++|+...+++........   ....       .+.+....-+      +..  .+      ..|.|..||
T Consensus       390 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~---~~~~-------~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D  459 (599)
T 1w6s_A          390 MGYHNQGHDSYDPKRELFFMGINHICMD---WEPF-------MLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN  459 (599)
T ss_dssp             TCSSCSCBCEEETTTTEEEEEEECEEEE---EEEC-------CCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred             ccccCCCCccCCCCCCEEEEecccccee---eecc-------cccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence                 01345666655554321110000   0000       0000000000      111  01      458899999


Q ss_pred             cCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          279 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +.+++.+-+.+...   +...-.+...+.+++.++.||.++.||..+++
T Consensus       460 ~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          460 AITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             TTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence            99999877665321   11111223357788889999999999999984

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.13  E-value=4.6e-08  Score=76.53  Aligned_cols=166  Identities=11%  Similarity=0.120  Sum_probs=111.1

Q ss_pred             eeEeEEEeCCce--EEEEEcCCCCCEEEEEeCCC--cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-cC
Q psy988           14 ECLCCFQHIDFV--TAICFHPRDDRYFLSGSLDG--KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YD   88 (408)
Q Consensus        14 ~~~~~~~h~~~v--~~~~~sp~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d   88 (408)
                      +.+.++.|...-  ..+.|+  ++.++.+.+.+|  .|+.+|+++++......+..   ........++++.|.... .+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEEeCCEEEEEEeeC
Confidence            455666676554  889998  467777777766  89999999999875333332   233322333455555554 57


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc---ccce
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV---SSQI  165 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~  165 (408)
                      +.+.++|.++.+....+....           ....++++++.|+.+..++.|.++|..+.+....+.-....   ..+.
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~-----------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDG-----------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSS-----------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECccCcEEEEEECCC-----------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            899999999998877765421           11233457888888877789999999998887776543221   2233


Q ss_pred             EEEEecCCCEEEEeecCceEEEeeeccceee
Q psy988          166 KASFSHDGKYIVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (408)
                      .+.+. +|+..+..-.+..|.+.|.+++...
T Consensus       176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred             eeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence            46665 6765554546789999999877644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=2.9e-09  Score=89.31  Aligned_cols=263  Identities=14%  Similarity=0.126  Sum_probs=148.1

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE
Q psy988           27 AICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH  106 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  106 (408)
                      ++.... ++ .|..++.++.|..|| .+++..  .........+.++...++|. +..++.+  +..+|. +++......
T Consensus        24 ~~~~d~-~g-~l~v~t~~~~l~~~d-~~g~~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~   94 (330)
T 3hxj_A           24 SPILAK-NG-TIYLGSSNKNLYAIN-TDGSVK--WFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD   94 (330)
T ss_dssp             CCEECT-TS-CEECSSTTTTTEEEC-TTSCEE--ESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred             CceEcc-CC-eEEEEcCCCEEEEEC-CCCcEE--EEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE
Confidence            344544 44 467777889999999 777754  23333445567777766765 4445444  888875 333221111


Q ss_pred             EeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEE
Q psy988          107 VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  186 (408)
Q Consensus       107 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  186 (408)
                      ..        ........+.  +..+++++.++.|..+|.. ++..........  .+.++...+++. ++.++.++.|.
T Consensus        95 ~~--------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~  160 (330)
T 3hxj_A           95 TK--------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLY  160 (330)
T ss_dssp             C-------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEE
T ss_pred             CC--------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEE
Confidence            00        0111122222  5678888888999999988 665554443222  233455666665 66677788899


Q ss_pred             EeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE
Q psy988          187 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL  266 (408)
Q Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (408)
                      .+|.. +.....            ..                                   .....+.++...+++..++
T Consensus       161 ~~d~~-g~~~~~------------~~-----------------------------------~~~~~~~~~~~d~~g~l~v  192 (330)
T 3hxj_A          161 AINPD-GTEKWR------------FK-----------------------------------TNDAITSAASIGKDGTIYF  192 (330)
T ss_dssp             EECTT-SCEEEE------------EE-----------------------------------CSSCCCSCCEECTTCCEEE
T ss_pred             EECCC-CCEeEE------------Ee-----------------------------------cCCCceeeeEEcCCCEEEE
Confidence            99875 322111            00                                   0011223344445555444


Q ss_pred             EecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee
Q psy988          267 VTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  346 (408)
Q Consensus       267 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  346 (408)
                       ++  +.|..+| .+++....+....  ..+.++...++|.+. .++.++.+..++....             .+.....
T Consensus       193 -~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g~-------------~~~~~~~  252 (330)
T 3hxj_A          193 -GS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAINPDGT-------------EKWRFKT  252 (330)
T ss_dssp             -ES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEECTTSC-------------EEEEEEC
T ss_pred             -Ee--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEECCCCC-------------EeEEeeC
Confidence             44  7799999 7777665555432  356677888887544 4556777888874321             2222222


Q ss_pred             eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          347 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       347 h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      ....+.++...+                ++ .|..++.+|.|..+|. +++.
T Consensus       253 ~~~~~~~~~~~~----------------~g-~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          253 GKRIESSPVIGN----------------TD-TIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             SSCCCSCCEECT----------------TS-CEEEECTTCEEEEECT-TSCE
T ss_pred             CCCccccceEcC----------------CC-eEEEecCCCCEEEECC-CCcE
Confidence            222333445554                45 4556677888888885 4443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.09  E-value=4.7e-08  Score=89.92  Aligned_cols=118  Identities=12%  Similarity=0.149  Sum_probs=76.9

Q ss_pred             EEEEcCCCCCEEEEEeCCC-----------cEEEEecCCCCceeeeeecC-CceeeEEEEEecCCCEEEEEec-CCEEEE
Q psy988           27 AICFHPRDDRYFLSGSLDG-----------KLRLWNIPDKKVAVWNEVEG-QTKLITAANFCENGKFAVVGSY-DGRCIF   93 (408)
Q Consensus        27 ~~~~sp~~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i   93 (408)
                      ++++.|.++++++.|+.+.           .+.+||..+++......+.. +.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            5566654678888887543           58899999887654433322 2233345677789999999884 468999


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CC-----CeEEEEEccCccc
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-ND-----SRIRLYDLRDLNL  151 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~  151 (408)
                      ||..+.+....   .....    ...-.+++..++++.++.|+ .+     ..+.+||..+.+-
T Consensus       270 yd~~t~~W~~~---~~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          270 YDSSSDSWIPG---PDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEGGGTEEEEC---CCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCcCCceeEC---CCCCc----cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            99987754322   11111    11223455667899888888 34     5699999987653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.09  E-value=5.1e-08  Score=81.38  Aligned_cols=245  Identities=13%  Similarity=0.076  Sum_probs=137.3

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc------------ccccCCCCeEEEeeCCCCCeEEEee
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR------------GKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                      ...+++|.++|++++++..++.|..|+..+..... +......            ........+.++++.+++..|+++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            45678899999878888889999999987654321 1111000            0000113578899997445666665


Q ss_pred             CCCeEEEEEccCcccceeecCc---cccccceEEEEec-CCCEEEEeec-----------------CceEEEeeecccee
Q psy988          137 NDSRIRLYDLRDLNLSCKYKGY---VNVSSQIKASFSH-DGKYIVSGSE-----------------NQCIYIWKTHHDYA  195 (408)
Q Consensus       137 ~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~  195 (408)
                      ..+.|..+|..++... .+...   ........+++.+ +|+..++-..                 ++.|..||..++..
T Consensus        99 ~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            5566888887755432 22111   1112345677888 7765544322                 13344444322110


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeE
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRI  274 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i  274 (408)
                      .                       .                         ....-.....++++|+++.|+++ ...+.|
T Consensus       178 ~-----------------------~-------------------------~~~~~~~p~gia~~~dg~~lyv~d~~~~~I  209 (322)
T 2fp8_A          178 T-----------------------L-------------------------LLKELHVPGGAEVSADSSFVLVAEFLSHQI  209 (322)
T ss_dssp             E-----------------------E-------------------------EEEEESCCCEEEECTTSSEEEEEEGGGTEE
T ss_pred             E-----------------------E-------------------------eccCCccCcceEECCCCCEEEEEeCCCCeE
Confidence            0                       0                         00001234557788888866555 566899


Q ss_pred             EEEEcCCCe--eeeEEeeccceeceeEEEEcCCCCEEEEecC----------CceEEEeeccccCccccccccCccccce
Q psy988          275 RLYDLRDLN--LSCKYKGYVNVSSQIKASFSHDGKYIVSGSE----------NQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       275 ~i~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                      .+|++....  ....+...  .. ...++++++|++.++...          .+.|..++...             +.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-------------~~~~  273 (322)
T 2fp8_A          210 VKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-------------NILE  273 (322)
T ss_dssp             EEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-------------CEEE
T ss_pred             EEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-------------CEEE
Confidence            999987521  11122211  11 557899999987766544          45677777542             2233


Q ss_pred             eeeee----ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          343 GIKAH----NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       343 ~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      .+...    ...++++++ .                +++++++....+.|..+++...
T Consensus       274 ~~~~~~g~~~~~~~~~~~-~----------------~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          274 VIPLPPPFAGEHFEQIQE-H----------------DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEECCTTTTTSCCCEEEE-E----------------TTEEEEECSSCSEEEEEEC---
T ss_pred             EEECCCCCccccceEEEE-e----------------CCEEEEeecCCCceEEEecccc
Confidence            33222    134566666 3                6777777777889999998644

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.09  E-value=5.8e-08  Score=75.96  Aligned_cols=187  Identities=10%  Similarity=0.066  Sum_probs=119.2

Q ss_pred             eEEEEEecCCCEEEEEecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEc
Q psy988           70 ITAANFCENGKFAVVGSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDL  146 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~  146 (408)
                      ...+.|+ ++.+..+.+.+|  .|+++|+++++.........         .....-..++++.|+... .++.+.+||.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---------~~FgeGit~~g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---------RYFGEGISDWKDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------TCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------ccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            4788888 677677777766  89999999998876664321         222222223456666665 4789999999


Q ss_pred             cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      .+.+.+.++......     ..++++++.|+.+..++.|.++|..+......                      +....+
T Consensus       115 ~t~~~~~ti~~~~eG-----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~----------------------I~V~~~  167 (262)
T 3nol_A          115 RNLRQVRSFNYDGEG-----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT----------------------ITVTAH  167 (262)
T ss_dssp             TTCCEEEEEECSSCC-----CCEEECSSCEEECCSSSEEEEECTTTCSEEEE----------------------EECEET
T ss_pred             ccCcEEEEEECCCCc-----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEE----------------------EEeccC
Confidence            999988887653321     34456788888877778899999876432211                      111000


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc----------ceec
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV----------NVSS  296 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~  296 (408)
                      ++.+                    ..+..+.+. +|+.++....++.|.+.|..+++.+..+....          ....
T Consensus       168 g~~~--------------------~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v  226 (262)
T 3nol_A          168 GEEL--------------------PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV  226 (262)
T ss_dssp             TEEC--------------------CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred             Cccc--------------------cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence            0000                    011122232 44445555677899999999999988876431          1124


Q ss_pred             eeEEEEcCCCCEEEEecC
Q psy988          297 QIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       297 v~~~~~s~~~~~l~~~~~  314 (408)
                      ...++|+|+++.|++.+.
T Consensus       227 lNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          227 LNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEECC
Confidence            578999998887776654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.08  E-value=1.7e-07  Score=84.26  Aligned_cols=316  Identities=10%  Similarity=0.054  Sum_probs=164.7

Q ss_pred             CceEEEEec-cCCeeEeEEEeCCc--e----------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce
Q psy988            2 DKTVRLWHI-SRKECLCCFQHIDF--V----------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         2 Dg~i~vwd~-~~~~~~~~~~h~~~--v----------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      ++.|.-+|. .+|+.+-.+.....  +          ..+..   .+..++.++.|+.+..+|..+++..-...+..+..
T Consensus        72 ~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~  148 (571)
T 2ad6_A           72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY---GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV  148 (571)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG
T ss_pred             CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE---ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc
Confidence            567888898 89998877653221  0          12233   24567788889999999999998764333332211


Q ss_pred             --eeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeecccc---------------------------
Q psy988           69 --LITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGK---------------------------  113 (408)
Q Consensus        69 --~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~---------------------------  113 (408)
                        .+.+--.-.++ .+++++.      ++.|..+|.++++.............                           
T Consensus       149 ~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~  227 (571)
T 2ad6_A          149 GSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGD  227 (571)
T ss_dssp             TCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTT
T ss_pred             cceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCccc
Confidence              11110001144 4555554      79999999999988766553221100                           


Q ss_pred             ---ccCCCCeEEEeeCCCCCeEEEeeCC----------------CeEEEEEccCcccceeecCccc-------cccceEE
Q psy988          114 ---NATGRKISGIEPMPGEDKILVTSND----------------SRIRLYDLRDLNLSCKYKGYVN-------VSSQIKA  167 (408)
Q Consensus       114 ---~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~  167 (408)
                         .........+++.++...++.+..+                +.|..+|.++++.+-.++...+       .....-+
T Consensus       228 ~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~  307 (571)
T 2ad6_A          228 AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLT  307 (571)
T ss_dssp             GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEE
T ss_pred             ceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEE
Confidence               0000001234566666677766532                3699999999998776653221       1112212


Q ss_pred             EEecCCC---EEEEeecCceEEEeeeccceeeeeecccCCC-----------cccccc--c---cccceE----------
Q psy988          168 SFSHDGK---YIVSGSENQCIYIWKTHHDYAKFSSVRRDRN-----------DFWEGI--K---AHNAVV----------  218 (408)
Q Consensus       168 ~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------~~~~~~--~---~~~~~v----------  218 (408)
                      ....+|+   .++.++.+|.++++|..+++...........           .++..-  .   .....+          
T Consensus       308 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~  387 (571)
T 2ad6_A          308 DQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHN  387 (571)
T ss_dssp             EEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSC
T ss_pred             ecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccC
Confidence            3334774   5777888999999999887665432211100           000000  0   000000          


Q ss_pred             -EEEEEeCCcceeeeecCCCCCCC-ce-eeecCCC---ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc
Q psy988          219 -TCAVFAPCPELIIAQMEPDKSES-TG-YVLNATG---RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  292 (408)
Q Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  292 (408)
                       ..++++|+...+.+........- .. .......   ..-..+..+|.+.   ....++.|..||+.+++.+-++....
T Consensus       388 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~---~~~~~g~l~a~D~~tG~~~W~~~~~~  464 (571)
T 2ad6_A          388 QGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGP---TKKEMGQIRAFDLTTGKAKWTKWEKF  464 (571)
T ss_dssp             SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTST---TSCCCEEEEEECTTTCCEEEEEEESS
T ss_pred             CCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCcccc---CCCCCCeEEEEECCCCCEEEEecCCC
Confidence             12344554444433211000000 00 0000000   0000000011100   00246889999999999877765432


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      .   +....+...+..++.++.||.|+.+|..+++
T Consensus       465 ~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          465 A---AWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             C---CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             C---ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence            1   1122233356778889999999999999874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.07  E-value=7e-07  Score=80.36  Aligned_cols=192  Identities=16%  Similarity=0.097  Sum_probs=112.9

Q ss_pred             eEEEEeccCCeeEeEEEeCCce----------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCce--eeE
Q psy988            4 TVRLWHISRKECLCCFQHIDFV----------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTK--LIT   71 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v----------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~v~   71 (408)
                      .|.-+|.++|+.+-.+......          ..+++   .+..++.++.|+.|.-+|.++++..-......+..  .+.
T Consensus        79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~  155 (582)
T 1flg_A           79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMT  155 (582)
T ss_dssp             EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCC
T ss_pred             CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccc
Confidence            3777888899988777632221          12233   24467788889999999999998763333322110  111


Q ss_pred             -EEEEec---CCC-EEEEEec------CCEEEEEeccCCeeeEEEEEeeccc------------cc--------------
Q psy988           72 -AANFCE---NGK-FAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRG------------KN--------------  114 (408)
Q Consensus        72 -~~~~~~---~~~-~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~------------~~--------------  114 (408)
                       ......   +|+ .+++++.      +|.|.-+|..+++............            ..              
T Consensus       156 ~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g  235 (582)
T 1flg_A          156 GAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTG  235 (582)
T ss_dssp             SCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTS
T ss_pred             cCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccc
Confidence             111111   233 5666543      7899999999988776543210000            00              


Q ss_pred             -------cCCCCeEEEeeCCCCCeEEEeeC--------------------C----CeEEEEEccCcccceeecCcccc--
Q psy988          115 -------ATGRKISGIEPMPGEDKILVTSN--------------------D----SRIRLYDLRDLNLSCKYKGYVNV--  161 (408)
Q Consensus       115 -------~~~~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~~~~~~~~--  161 (408)
                             .....-..+++.|....++++..                    |    +.|.-+|.++++.+-.++...+.  
T Consensus       236 ~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~w  315 (582)
T 1flg_A          236 KVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAW  315 (582)
T ss_dssp             BCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             cccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcc
Confidence                   00001123556677777777653                    2    58999999999988776542211  


Q ss_pred             -----ccceEEEEe-cCCC---EEEEeecCceEEEeeeccceeeee
Q psy988          162 -----SSQIKASFS-HDGK---YIVSGSENQCIYIWKTHHDYAKFS  198 (408)
Q Consensus       162 -----~~~~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~  198 (408)
                           ....-+... .+|+   .++.++.+|.++++|.++++....
T Consensus       316 d~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  361 (582)
T 1flg_A          316 DFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA  361 (582)
T ss_dssp             CCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence                 111112222 4674   688899999999999988776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.07  E-value=1e-06  Score=72.85  Aligned_cols=242  Identities=11%  Similarity=0.073  Sum_probs=137.1

Q ss_pred             eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC--CEE
Q psy988           14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD--GRC   91 (408)
Q Consensus        14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i   91 (408)
                      +.+..+........++|+| +++++++-..++.|..||..+. ...  ... ....+..+++.++|+++++....  ..|
T Consensus        23 ~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~--~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           23 KIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQI--HAT-VEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             EEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEE--EEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             eEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-eEE--EEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            3444443336788999999 8887777767899999998754 321  222 23468899999999965554332  246


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc-ceee-------cCcccccc
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-SCKY-------KGYVNVSS  163 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-------~~~~~~~~  163 (408)
                      ..++..+++.......   ..    ......++..+++..+++-..++.|+.+|..+++. +...       ........
T Consensus        98 ~~~d~~~g~~~~~~~~---~~----~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTL---PD----AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEECTTSCEEEEEEC---TT----CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEcCCCCeEEEEEeC---CC----ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            6677666654322211   11    12234455455443333334578999999865421 1100       00011112


Q ss_pred             ceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          164 QIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                      ...+  ++++++|+.+. ..+.|..|++.....               + ... .+.  .                    
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~---------------~-~~~-~~~--~--------------------  209 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK---------------P-GEP-EIF--V--------------------  209 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSC---------------B-CCC-EEE--E--------------------
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC---------------C-Ccc-EEE--e--------------------
Confidence            3334  78887766654 467888888753100               0 000 000  0                    


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc---CCCCEEEEecCC
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSEN  315 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d  315 (408)
                            ....+..++++++|+++++....+.|.++|.. ++...............+++|.   |+++.|++.+..
T Consensus       210 ------~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          210 ------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ------ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ------ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence                  00134557778888777776777889999975 5543222222222357789998   888877766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=7.1e-06  Score=77.28  Aligned_cols=346  Identities=9%  Similarity=0.058  Sum_probs=192.7

Q ss_pred             eEEEEeccCCeeEeEEE--------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee-------e-----
Q psy988            4 TVRLWHISRKECLCCFQ--------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE-------V-----   63 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~-----   63 (408)
                      -+.+||..+++......        ....|.++...+ ++. |..|+..+-|.+++..++.......       .     
T Consensus       231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~  308 (781)
T 3v9f_A          231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY  308 (781)
T ss_dssp             EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred             cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence            36677776665543321        235699999887 665 5556665678899987765432211       0     


Q ss_pred             cCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEee-ccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           64 EGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRS-TRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        64 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      .-....|.++...++|. |-.|+.++-|..++.............. ..........|.++...+++ .|.+|+.++-|.
T Consensus       309 ~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~Gl~  386 (781)
T 3v9f_A          309 SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGGGIN  386 (781)
T ss_dssp             SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSSCEE
T ss_pred             CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCCcEE
Confidence            11245689998888876 6667777778888877554322111000 00111123568888887766 466777666799


Q ss_pred             EEEccCcccceeec-CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          143 LYDLRDLNLSCKYK-GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       143 i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                      .||..++....... .......+.++...+++. |.+|+.++-+..+|..++.....  ...        ......|.++
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~--~~~--------~~~~~~v~~i  455 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQII--ELE--------KNELLDVRVF  455 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEEC--CST--------TTCCCCEEEE
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEe--ccC--------CCCCCeEEEE
Confidence            99987654322111 011223466777777775 55576666788888765432110  000        1234567888


Q ss_pred             EEeCCcceeeeecCC-----CCCCCceeeecC-----CCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988          222 VFAPCPELIIAQMEP-----DKSESTGYVLNA-----TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  291 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  291 (408)
                      ...+++...+.....     ............     ....|.++...++|...+....+| +..||..+++.. .+...
T Consensus       456 ~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~  533 (781)
T 3v9f_A          456 YEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQY  533 (781)
T ss_dssp             EECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTT
T ss_pred             EECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCC
Confidence            888877766554311     001111111111     135788898898888666544345 777887765433 33211


Q ss_pred             c--ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeee-eccceEEEEecCCchhhhhccC
Q psy988          292 V--NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQME  368 (408)
Q Consensus       292 ~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~  368 (408)
                      .  ....|.++...++|++.++.. +|.|..||..++...          ......+ ....|.++...+          
T Consensus       534 ~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~----------~~~~~~gl~~~~i~~i~~d~----------  592 (781)
T 3v9f_A          534 EGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ----------VFQRKEGLPNTHIRAISEDK----------  592 (781)
T ss_dssp             TTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE----------EECGGGTCSCCCCCEEEECS----------
T ss_pred             CCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE----------EccccCCCCCceEEEEEECC----------
Confidence            1  123578888889988766554 676588887664211          0000001 123577888887          


Q ss_pred             CCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          369 PDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       369 ~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                            +|++.+++ .+| |..++..+
T Consensus       593 ------~g~lW~~t-~~G-l~~~~~~~  611 (781)
T 3v9f_A          593 ------NGNIWAST-NTG-ISCYITSK  611 (781)
T ss_dssp             ------SSCEEEEC-SSC-EEEEETTT
T ss_pred             ------CCCEEEEc-CCc-eEEEECCC
Confidence                  67666654 344 55566554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.06  E-value=5.2e-07  Score=81.08  Aligned_cols=115  Identities=7%  Similarity=0.009  Sum_probs=69.4

Q ss_pred             CEEEEEeC-CCcEEEEec-CCCCceeeeeecCCce---------eeEEEEEecCCCE----EEEEecCCEEEEEeccCCe
Q psy988           36 RYFLSGSL-DGKLRLWNI-PDKKVAVWNEVEGQTK---------LITAANFCENGKF----AVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        36 ~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~~  100 (408)
                      ..++.++. ++.|.-+|. .+++.+-.........         ....++++|.+..    ++.++.|+.+..+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            45666666 789999999 8887653222221110         0123445444444    8888899999999999998


Q ss_pred             eeEEEEEeecccc-ccCCCCeEEEeeCCCCCeEEEee------CCCeEEEEEccCcccceeec
Q psy988          101 YHTQIHVRSTRGK-NATGRKISGIEPMPGEDKILVTS------NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus       101 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ............. .....++    +  .+..+++++      .+|.|+-+|.++++.+-.+.
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~----v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPY----V--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCE----E--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEeecCCCCCccceeecCCE----E--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            8766543221100 0001111    1  134566665      37999999999998876554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.05  E-value=6.8e-07  Score=80.37  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             CEEEEEeC-CCcEEEEec-CCCCceeeeeecCCce--------e-eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEE
Q psy988           36 RYFLSGSL-DGKLRLWNI-PDKKVAVWNEVEGQTK--------L-ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        36 ~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  104 (408)
                      ..++.++. ++.|.-+|. .+++.+-...+.....        . -..+..  .+..++.++.|+.+..+|..+++....
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            34666666 789999999 8888653222221100        0 011222  356788888999999999999988766


Q ss_pred             EEEeecccc-ccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeec
Q psy988          105 IHVRSTRGK-NATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus       105 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  156 (408)
                      ......... .....++    .  .+..+++++.      ++.|+.+|.++++.+..+.
T Consensus       141 ~~~~~~~~~~~~~~~P~----v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPF----V--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EECCCGGGTCBCCSCCE----E--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ecCCCCCccceeccCCE----E--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            543221100 0001111    1  2446666654      7899999999998876654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=1.3e-05  Score=75.43  Aligned_cols=350  Identities=9%  Similarity=0.085  Sum_probs=195.9

Q ss_pred             eEEEEeccCCeeEeEEE--------eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-----CCceee
Q psy988            4 TVRLWHISRKECLCCFQ--------HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-----GQTKLI   70 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--------h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v   70 (408)
                      -|..||..+++......        ....|.++...+ ++.+.+ |+.+ -+.+||..+++........     .....|
T Consensus       184 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i  260 (781)
T 3v9f_A          184 GLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT-NGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYI  260 (781)
T ss_dssp             EEEEEETTTTEEEEECC--------CCSSEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCE
T ss_pred             CeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC-CCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceE
Confidence            46667776665433210        135689999888 776544 4454 5899998776554221111     123568


Q ss_pred             EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE--E----eeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988           71 TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH--V----RSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  144 (408)
                      .++...++|. |..|+..+-|.+++..+........  .    ............|.++...+++ .|.+|+.++-|..+
T Consensus       261 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~Gl~~~  338 (781)
T 3v9f_A          261 FSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGGGINFI  338 (781)
T ss_dssp             EEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSSCEEEE
T ss_pred             EEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCCeEEEe
Confidence            8988887776 5556664568888887654322111  0    0000112234578899888766 47777777778999


Q ss_pred             EccCcccceee-------cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccce
Q psy988          145 DLRDLNLSCKY-------KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  217 (408)
Q Consensus       145 d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (408)
                      +..+.......       ........+.++...++|. |..|+.++-|..||..+.....-  .       .........
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~--~-------~~~~~~~~~  408 (781)
T 3v9f_A          339 SNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN--K-------ENRELLSNS  408 (781)
T ss_dssp             CSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC--------------CCCSB
T ss_pred             CCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc--c-------CCCCCCCcc
Confidence            88765432211       1111223466777777765 66666666688898764322110  0       000123456


Q ss_pred             EEEEEEeCCcceeeeecCCC-----CCCCceeee---cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe
Q psy988          218 VTCAVFAPCPELIIAQMEPD-----KSESTGYVL---NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  289 (408)
Q Consensus       218 v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  289 (408)
                      |.++...+++...+......     ........+   ......|.++...+++...+. +. +-+..||..+++......
T Consensus       409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEEC
T ss_pred             eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEeccc
Confidence            88888888777666543111     011111111   123457888888888775554 44 458899988765543322


Q ss_pred             ec---cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhc
Q psy988          290 GY---VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  366 (408)
Q Consensus       290 ~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  366 (408)
                      ..   .....+.++...++|++.+.....| +..|+..+....  ....     ..  .-....|.++...+        
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~--~~~~-----~~--~l~~~~i~~i~~d~--------  548 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR--KFNQ-----YE--GFCSNTINQIYRSS--------  548 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE--EECT-----TT--TCSCSCEEEEEECT--------
T ss_pred             CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE--EccC-----CC--CCCCCeeEEEEECC--------
Confidence            11   0124678888999888666543344 777876653110  0000     00  01235688898888        


Q ss_pred             cCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          367 MEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       367 ~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                              +|++.++.. +|.|..|+..+++
T Consensus       549 --------~g~lWi~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          549 --------KGQMWLATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             --------TSCEEEEET-TEEEEESCTTTCC
T ss_pred             --------CCCEEEEEC-CCceEEECCCCCc
Confidence                    777666554 7765888877654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.01  E-value=2.9e-06  Score=76.40  Aligned_cols=118  Identities=11%  Similarity=-0.027  Sum_probs=65.4

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee-------eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEE
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL-------ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIH  106 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  106 (408)
                      ++. ++.++.++.|.-+|..+++.+-..........       -..+..  .+..++.++.++.|..+|.++++......
T Consensus        68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            444 55555534488899998886532222211100       011122  35568888899999999999998876654


Q ss_pred             Eeecccc-ccCCCCeEEEeeCCCCC-eEEEeeC------CCeEEEEEccCcccceee
Q psy988          107 VRSTRGK-NATGRKISGIEPMPGED-KILVTSN------DSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus       107 ~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~  155 (408)
                      ....... .....++.. .-..+++ .+++++.      ++.|+-+|.++++.+-..
T Consensus       145 ~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             CSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             CCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            3321100 001112110 0001223 5666542      789999999998876554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.99  E-value=1.1e-07  Score=74.43  Aligned_cols=165  Identities=10%  Similarity=0.081  Sum_probs=110.6

Q ss_pred             eeEeEEEeCCce--EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCCE
Q psy988           14 ECLCCFQHIDFV--TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDGR   90 (408)
Q Consensus        14 ~~~~~~~h~~~v--~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~   90 (408)
                      +.+.++.|...-  ..+.|+  ++.++++.+.+|.|+++|+++++..... +..   ........++++.|+. .-.++.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---~~FgeGit~~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG---NIFAEGLASDGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---TCCEEEEEECSSCEEEEESSSCE
T ss_pred             EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---CcceeEEEEeCCEEEEEEccCCE
Confidence            455666666444  788997  4678888888899999999999987533 333   2222222334444444 446789


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccc---cceEE
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVS---SQIKA  167 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~  167 (408)
                      +.+||.++.+....+....         .-..+  +++++.|+.+..++.|.++|.++.+.+..+.-.....   .+..+
T Consensus       118 v~V~D~~Tl~~~~ti~~~~---------eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL  186 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSG---------EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL  186 (268)
T ss_dssp             EEEEETTTTEEEEEEECSS---------CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEECCcCcEEEEEeCCC---------ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence            9999999999877765421         11233  3568888888778999999999988877765433221   23456


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceee
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAK  196 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (408)
                      .|. +|+..+....+..|.+.|.+++...
T Consensus       187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          187 ECA-NGVIYANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             EEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred             EEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence            666 6754544446778999998876543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.95  E-value=1.5e-07  Score=73.60  Aligned_cols=167  Identities=11%  Similarity=0.016  Sum_probs=114.6

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEE--EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTA--ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~--~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      +|.|+++|+++++.+..+ -......  +++.  ++++.+....++.+.+||.++.+...  .+..... -..  +++++
T Consensus        74 ~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~--ti~~~~e-GwG--Lt~Dg  145 (268)
T 3nok_A           74 QGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER--TTRYSGE-GWG--LCYWN  145 (268)
T ss_dssp             TTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE--EEECSSC-CCC--EEEET
T ss_pred             CCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE--EEeCCCc-eeE--EecCC
Confidence            577999999999998888 5555544  5554  34555555568999999999988763  3332221 123  33678


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      +.|+.+..++.|.++|.++.+....+........   -..++.+.|. +|. |++.. .++.|.+.|.++++.+..+...
T Consensus       146 ~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~  220 (268)
T 3nok_A          146 GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDAS  220 (268)
T ss_dssp             TEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred             CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence            8888887899999999999888777665442111   1245667776 564 55554 5789999999999987766432


Q ss_pred             c-----------ccccceEEEEecCCCEEEEeec
Q psy988          159 V-----------NVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       159 ~-----------~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      .           .......++++|+++.|++.+.
T Consensus       221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            1           1123567999998777766654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.95  E-value=2.2e-06  Score=70.86  Aligned_cols=204  Identities=9%  Similarity=0.014  Sum_probs=112.7

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--CeEEEEE
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--SRIRLYD  145 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d  145 (408)
                      .....++|+++|+++++-..++.|..||.+... .....         .......+++.++++.+++....  ..|..+|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~---------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT---------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE---------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe---------CCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            456789999999877776678999999987632 11111         11368889999999855544332  2477778


Q ss_pred             ccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeC
Q psy988          146 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  225 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  225 (408)
                      ..+++........ .......++..+++..+++-..++.|+.+|...+..........    .....            +
T Consensus       102 ~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~----~~~~~------------~  164 (306)
T 2p4o_A          102 KSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM----LARSN------------S  164 (306)
T ss_dssp             CTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG----GSCSS------------T
T ss_pred             CCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc----ccccc------------c
Confidence            7777643322211 11112234444555444444457888888865421110000000    00000            0


Q ss_pred             CcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCC-Cee--eeEEeeccceeceeEEE
Q psy988          226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRD-LNL--SCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~v~~~~  301 (408)
                                           ...-.....+  +|+++.|++ -...+.|..|++.. ++.  ...+...   .....++
T Consensus       165 ---------------------~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~  218 (306)
T 2p4o_A          165 ---------------------ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFA  218 (306)
T ss_dssp             ---------------------TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEE
T ss_pred             ---------------------cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeE
Confidence                                 0000112223  555655544 46678999999874 332  1122111   1344689


Q ss_pred             EcCCCCEEEEecCCceEEEeecc
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      ++++|+++++....+.|.+++..
T Consensus       219 vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          219 FDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EBTTCCEEEECBTTCCEEEECTT
T ss_pred             ECCCCCEEEEeCCCCeEEEECCC
Confidence            99999887777778899999865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=6.8e-07  Score=69.39  Aligned_cols=188  Identities=10%  Similarity=0.003  Sum_probs=116.2

Q ss_pred             eeeEEEEEecCCCEEEEEecC--CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEE
Q psy988           68 KLITAANFCENGKFAVVGSYD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLY  144 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~  144 (408)
                      .-...+.|++ +.+..+.+.+  ..|+.+|+++++..........       ..-..+++  .++.|+.. -.++.+.+|
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------~fgeGi~~--~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------YFGAGIVA--WRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------CCEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------cceeEEEE--eCCEEEEEEeeCCEEEEE
Confidence            3466888876 5555666654  4999999999988766643221       01122333  35556555 457899999


Q ss_pred             EccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      |..+.+.+.++......     ..+.++++.|+.+..++.|.++|.++......                      +...
T Consensus        91 D~~tl~~~~ti~~~~~G-----wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~----------------------I~V~  143 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEG-----WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS----------------------IKVT  143 (243)
T ss_dssp             ETTTTEEEEEEECSSCC-----CEEEECSSCEEEECSSSEEEEECTTTCCEEEE----------------------EECE
T ss_pred             ECCcCcEEEEEeCCCCc-----eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE----------------------EEEc
Confidence            99999988887754321     34456777788777788999999876432211                      1110


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-----------c
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----------N  293 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~  293 (408)
                      .++.-+                    ..+..+.+. +|+.++....+..|.+.|..+++.+..+....           .
T Consensus       144 ~~g~~~--------------------~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          144 AGGRPL--------------------DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             ETTEEC--------------------CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             cCCccc--------------------ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence            000000                    011122222 34444555567799999999999988876331           1


Q ss_pred             eeceeEEEEcCCCCEEEEec
Q psy988          294 VSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       294 ~~~v~~~~~s~~~~~l~~~~  313 (408)
                      ......++++|+++.|++.+
T Consensus       203 ~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEC
Confidence            22457899999877666554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.90  E-value=2.4e-06  Score=67.39  Aligned_cols=169  Identities=8%  Similarity=0.065  Sum_probs=105.0

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY  101 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  101 (408)
                      .+.+..++|+|+++.++++...++.|...|.. ++......+.+. .....+++.+++.++++.-.++.+.++++.....
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            35699999999444455557778889999987 665532333332 4577888889988777766778999998876553


Q ss_pred             eEEEEEeecc-ccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC---cccceeec-----CccccccceEEEEecC
Q psy988          102 HTQIHVRSTR-GKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---LNLSCKYK-----GYVNVSSQIKASFSHD  172 (408)
Q Consensus       102 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~  172 (408)
                      .......... ...........++|.|.++.|+++.+.....+|.+..   ...+..+.     ..........++++|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence            2222222111 1123345689999999998888887765556665541   11111111     0111123457889996


Q ss_pred             CCE-EEEeecCceEEEeeecc
Q psy988          173 GKY-IVSGSENQCIYIWKTHH  192 (408)
Q Consensus       173 ~~~-l~~~~~dg~i~i~d~~~  192 (408)
                      ... ++.......+..+|.+.
T Consensus       184 tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             TTEEEEEETTTTEEEEECTTC
T ss_pred             CCeEEEEECCCCeEEEEcCCC
Confidence            554 45555667888888653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.89  E-value=6.5e-07  Score=69.48  Aligned_cols=169  Identities=10%  Similarity=-0.018  Sum_probs=113.6

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      ..|+++|+++++.+....-..........+.++++.+....++.+.+||.++.+...  .+...... ..  +.++++.|
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~--ti~~~~~G-wg--lt~dg~~L  117 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA--RFRYPGEG-WA--LTSDDSHL  117 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE--EEECSSCC-CE--EEECSSCE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE--EEeCCCCc-eE--EeeCCCEE
Confidence            479999999999999988555554433333134555555568999999999988763  33322221 23  34677878


Q ss_pred             EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCc---
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGY---  158 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~---  158 (408)
                      +.+..++.|.++|.++.+....+........   -..++.+.+. ++. +++.. .+..|.+.|.++++.+..+...   
T Consensus       118 ~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~---~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~  192 (243)
T 3mbr_X          118 YMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP---LDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALV  192 (243)
T ss_dssp             EEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGS
T ss_pred             EEECCCCeEEEEeCCCCeEEEEEEEccCCcc---cccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCc
Confidence            8777889999999999887777665432111   1245666665 454 54443 5779999999999987765422   


Q ss_pred             --------cccccceEEEEecCCCEEEEeec
Q psy988          159 --------VNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       159 --------~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                              ........++++|+++.|++.+.
T Consensus       193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          193 PDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence                    11123567999998887777664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.86  E-value=9.3e-06  Score=70.31  Aligned_cols=156  Identities=16%  Similarity=0.132  Sum_probs=91.6

Q ss_pred             ceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC-----EEEEEecc
Q psy988           24 FVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG-----RCIFYTTD   97 (408)
Q Consensus        24 ~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~   97 (408)
                      ....++|+|+ ++..|..+...+.|+.++..++...   .+.........++++++|+ |+.+...+     .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~---~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD---IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE---EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE---EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            3578999982 1334555544489999999877655   3333445688999999999 55444321     23333332


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEE
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      ...... .....       ......++++|++..|+++ ..++.|+.+|..++.....+...........++++|++++|
T Consensus       216 ~~~~~~-~~~~~-------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          216 SGFTER-LSLCN-------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             GTTCCE-EEEEE-------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             CCeecc-ccccc-------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            221110 11111       1346678899944455554 55788999998866652222111111223469999999966


Q ss_pred             EEee-cCceEEEeeec
Q psy988          177 VSGS-ENQCIYIWKTH  191 (408)
Q Consensus       177 ~~~~-~dg~i~i~d~~  191 (408)
                      +.+. ..+.|+.++..
T Consensus       288 Yvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEETTTTEEEEEEBC
T ss_pred             EEEeCCCCEEEEEeCC
Confidence            6554 45788887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.83  E-value=0.00011  Score=71.36  Aligned_cols=135  Identities=10%  Similarity=0.108  Sum_probs=81.8

Q ss_pred             ceEEEEeccCCeeEeEEEe--CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC--
Q psy988            3 KTVRLWHISRKECLCCFQH--IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN--   78 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--   78 (408)
                      ..|++.+......+..+..  ...|...+.+.   ..++.++ .+.+.+++++.++....... .-...|.|+++.|.  
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~  566 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGD  566 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSS
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCC
Confidence            4566777665555555552  23566666543   3565554 57888888876654332222 23457999999763  


Q ss_pred             ----CCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEcc
Q psy988           79 ----GKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLR  147 (408)
Q Consensus        79 ----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  147 (408)
                          +++++.|.. |++++|+++.+.+......+..   . .....+.-+.+ ....+|.+|-.||.+.-+.+.
T Consensus       567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~---~-~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG---E-IIPRSILMTTF-ESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS---S-CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred             CcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC---C-CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEc
Confidence                478999997 9999999998765543332211   0 01112322333 234578888899988766554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.83  E-value=3.1e-07  Score=84.48  Aligned_cols=96  Identities=11%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             eEEEEeccCCeeEeE--EE--eCCceEEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            4 TVRLWHISRKECLCC--FQ--HIDFVTAICFHPRDDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~--~~--h~~~v~~~~~sp~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      .+.+||+.+++....  ..  +.....++++.+ ++++++.|+. +..+.+||..+.+......+... ..-.++...++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~d  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSD  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEecC
Confidence            577888877764432  22  333344577888 8999999985 46899999988765533322221 12234455678


Q ss_pred             CCEEEEEe-cC-----CEEEEEeccCCee
Q psy988           79 GKFAVVGS-YD-----GRCIFYTTDQLKY  101 (408)
Q Consensus        79 ~~~l~~~~-~d-----g~i~iw~~~~~~~  101 (408)
                      |+.++.|+ .+     ..+.+||..+...
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            99999988 34     5789999987664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.82  E-value=8.5e-06  Score=69.55  Aligned_cols=177  Identities=14%  Similarity=0.019  Sum_probs=111.9

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      ..|+..++.+.+..........+..++|++.++.++++-...+.|..+++.+.....  .+.........+++.+.+..|
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EECSSCSCCCCEEEETTTTEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EEeCCCCCccEEEEEeCCCeE
Confidence            457777777766655555556688999998455555555567889999988765432  222222345678888755444


Q ss_pred             -EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C-CeEEEEEccCcccceeecCcc
Q psy988           83 -VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D-SRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        83 -~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~  159 (408)
                       ++-...+.|.+.+++.........        ........+++.|.+..|+.+.. . +.|..+++...........  
T Consensus       174 Y~~d~~~~~I~~~~~dg~~~~~l~~--------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--  243 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--  243 (386)
T ss_dssp             EEEETTTTEEEECBTTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--
T ss_pred             EEEcCCCCeEEEEeCCCCceEEeec--------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--
Confidence             455556788888887543222111        11235788999998877777644 3 6788888864433222221  


Q ss_pred             ccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988          160 NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  191 (408)
                      .......++++|++..|+.+. ..+.|..+|+.
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            223356799998777766654 45678888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.81  E-value=2.2e-05  Score=65.91  Aligned_cols=177  Identities=14%  Similarity=0.021  Sum_probs=111.7

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      +.|+..++...+..........+..++|++.++.++++-...+.|..+++.+.....  ...........+++.+.+..|
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCEEEEETTTTEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE--EEeCCCCCccEEEEecCCCeE
Confidence            456677776665555555555689999998455555555567889999988765442  222223345788888755444


Q ss_pred             -EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-C-CeEEEEEccCcccceeecCcc
Q psy988           83 -VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-D-SRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        83 -~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~  159 (408)
                       ++-...+.|.+.+.+.........        ........+++.|.+..|+.+.. . +.|..+++..... ..+.. .
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~--------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-~  200 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD-T  200 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC--------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCC-S
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEe--------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEE-C
Confidence             555556899999987654222110        11235788999997777776644 3 7888888864332 22211 1


Q ss_pred             ccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988          160 NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  191 (408)
                      .......++++|++..|+.+. ..+.|..+|+.
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            223466799998777776664 45678888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.78  E-value=4.2e-05  Score=63.33  Aligned_cols=177  Identities=12%  Similarity=0.002  Sum_probs=112.6

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCC----CCceeeeeecCCceeeEEEEEecC
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD----KKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      +.|+..|+.+.+....+.....+..++|++.++.++++-..++.|..+++.+    ....  ..+...-.....+++.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCcCEEEEeec
Confidence            5688899988877666666677899999983445555555678999999876    2222  122222234578888875


Q ss_pred             CCEE-EEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--CeEEEEEccCcccceee
Q psy988           79 GKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--SRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        79 ~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~  155 (408)
                      +..| ++-...+.|.+.+.+.........        ........+++.|.+..|+.+...  +.|...++.. .....+
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~  158 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL  158 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEE--------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEE--------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEE
Confidence            5444 454567899999987643322111        011357889999977777776543  6888888764 322222


Q ss_pred             cCccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  191 (408)
                      .. ........+++++++..|+.+. ..+.|..+|+.
T Consensus       159 ~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          159 VT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            11 1223466799999877776665 45688888875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=2.7e-05  Score=67.44  Aligned_cols=155  Identities=12%  Similarity=0.170  Sum_probs=94.1

Q ss_pred             ceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----C-EEEEEecc
Q psy988           24 FVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----G-RCIFYTTD   97 (408)
Q Consensus        24 ~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iw~~~   97 (408)
                      ....|+++|. ++. |..+...+.|+.+|++++...   .+.........++|+++|++|+.+...    . .+.+++..
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            4578899972 354 555544488999998876654   222344568899999999977666542    1 34444433


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCC-CCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEE
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMP-GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI  176 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (408)
                      . ..........       ......++++| ++..+++-..++.|..++...+......... .......++++|+|++|
T Consensus       214 g-~~~~~~~l~~-------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          214 S-GFKVITELTK-------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             G-TSCSEEEEEE-------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEE
T ss_pred             C-ceeeeeeecc-------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEE
Confidence            2 2211111111       12467788999 4544444456789999999866542222111 11335679999999966


Q ss_pred             EEee-cCceEEEeeec
Q psy988          177 VSGS-ENQCIYIWKTH  191 (408)
Q Consensus       177 ~~~~-~dg~i~i~d~~  191 (408)
                      +.+. ..+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            5554 56788888875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.71  E-value=9.7e-05  Score=63.29  Aligned_cols=179  Identities=12%  Similarity=0.026  Sum_probs=109.8

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--ceeeeeecCCceeeEEEEEecC-C
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK--VAVWNEVEGQTKLITAANFCEN-G   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~   79 (408)
                      ..|+..++..............+..|+|++.++.++++-...+.|..+++....  ................+++.+. +
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            467777877766666666667889999998445555555557889999987632  1111223333446788899874 4


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecC
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ++.++-...+.|.+.+++.........        ........+++.|.+..|+.+..  .+.|...++...........
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~--------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCSEEEEEE--------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             ceEEEECCCCeEEEEeCCCCceEEEEe--------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            444555567899999988654332221        01235788999997777777653  36788888764333222221


Q ss_pred             ccccccceEEEEecCCCEEEEeec-CceEEEeeec
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTH  191 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~  191 (408)
                        .......+++++++..|+.+.. .+.|..+|+.
T Consensus       244 --~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          244 --NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             --SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence              2233567888887776666643 4567777653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=6.6e-05  Score=65.22  Aligned_cols=160  Identities=11%  Similarity=0.152  Sum_probs=95.7

Q ss_pred             eEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCceeeeeecC-CceeeEEEEE-------ecCCCEEEEEecCC------
Q psy988           25 VTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-QTKLITAANF-------CENGKFAVVGSYDG------   89 (408)
Q Consensus        25 v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~l~~~~~dg------   89 (408)
                      ...|+|+|. .++++++-...+.|++.|++++.+..+..... .......++|       +++|++|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            568999983 35555555545678999988877653222211 2235899999       99999777776654      


Q ss_pred             -EEEEEeccC-CeeeE---EEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEcc-------Cccc-----
Q psy988           90 -RCIFYTTDQ-LKYHT---QIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLR-------DLNL-----  151 (408)
Q Consensus        90 -~i~iw~~~~-~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~-------~~~~-----  151 (408)
                       .+.+++... +....   ......       ......++++|++..|+++ ..++.|..+|+.       ++..     
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             ceEEEEecCCCCceeecccceeecc-------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence             255665333 12210   001111       1245678889966666655 567889999997       5543     


Q ss_pred             ------ceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988          152 ------SCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       152 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  191 (408)
                            ...+...........++|+|+|++|+.+. ....|+.++..
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                  11111111123356799999999665554 46688887653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.67  E-value=1.9e-05  Score=73.79  Aligned_cols=113  Identities=10%  Similarity=0.042  Sum_probs=74.2

Q ss_pred             eeEEEEEe-cCCCEEEEEecC-----CEEEEEeccCC-eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---
Q psy988           69 LITAANFC-ENGKFAVVGSYD-----GRCIFYTTDQL-KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---  138 (408)
Q Consensus        69 ~v~~~~~~-~~~~~l~~~~~d-----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  138 (408)
                      .+...+|| |||++|+.+...     ..|+++|+.++ +.... ...         .....+.|+||++.|+....+   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---------~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---------GTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---------EECSCCEECSSTTEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---------CceeeEEEecCCCEEEEEEECCCC
Confidence            67889999 999988865442     25999999987 52211 000         123468899999988887654   


Q ss_pred             --CeEEEEEccCcccc--eeecCccccccceEEEEecCCCEEEEeec---CceEEEeeecc
Q psy988          139 --SRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHH  192 (408)
Q Consensus       139 --g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~  192 (408)
                        ..|+.+++.++...  ..+..... .....+.|+|||++|+....   ...|+++|+.+
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence              36888888776432  22222111 22456789999999887653   34677777754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.67  E-value=0.0001  Score=62.92  Aligned_cols=236  Identities=10%  Similarity=-0.016  Sum_probs=129.7

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEE-EecCCEEEEEeccCCeeeE
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV-GSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~  103 (408)
                      -.|.+..+ .+ +|+.+ ....|+..++.+.....  ... ....+..++|.+.+..|+. -...+.|..++.+......
T Consensus        79 ~~C~~~~~-~~-~l~~~-~~~~I~~i~~~~~~~~~--~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           79 RSCKALGP-EP-VLLFA-NRIDIRQVLPHRSEYTL--LLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             SCEEECSS-CC-EEEEE-CBSCEEEECTTSCCCEE--EEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred             CeECCccc-cc-eeEee-cCccceeeccCCCcEEE--Eec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence            34444444 33 34443 34678888987766542  222 3345789999976555554 4456889999988654322


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-  181 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  181 (408)
                      ...    .    .......+++.+.+..|+.+ ...+.|.+.++........+..  .......++++|.+..|+.... 
T Consensus       153 ~~~----~----~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          153 VVS----T----GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             EEC----S----SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECS
T ss_pred             EEe----C----CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccC
Confidence            111    0    01245678888766666655 4467888888865433222222  2233567899987776665543 


Q ss_pred             C-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          182 N-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       182 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      . +.|+.+++......             .+.                                  ...-.....|+++|
T Consensus       223 ~~~~I~r~~~dG~~~~-------------~~~----------------------------------~~~~~~PnGlavd~  255 (386)
T 3v65_B          223 NTPRIEASSMDGSGRR-------------IIA----------------------------------DTHLFWPNGLTIDY  255 (386)
T ss_dssp             SSCEEEEEETTSCSCE-------------EEE----------------------------------CSSCSCEEEEEEEG
T ss_pred             CCCEEEEEeCCCCCcE-------------EEE----------------------------------ECCCCCeeeEEEeC
Confidence            3 56666665421100             000                                  00111234455554


Q ss_pred             CCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          261 GEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       261 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ++..|+.+ ...+.|..+|+........+...  ......+++ ..+.++.+-...+.|..++..++
T Consensus       256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          256 AGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             GGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            44444443 55678999987643332222221  223456677 34455556666788888885444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.64  E-value=2.1e-05  Score=73.52  Aligned_cols=116  Identities=11%  Similarity=0.059  Sum_probs=77.0

Q ss_pred             ceEEEEEc-CCCCCEEEEEeC-CC----cEEEEecCCC-CceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEE
Q psy988           24 FVTAICFH-PRDDRYFLSGSL-DG----KLRLWNIPDK-KVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRC   91 (408)
Q Consensus        24 ~v~~~~~s-p~~~~~l~t~~~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i   91 (408)
                      .+...+|| | ||++||.+.. +|    .|+++|+.++ +... ..+   ......+.|+|||+.|+....+     ..|
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            57889999 9 8988875543 33    4999999988 6321 112   1224568899999988877765     267


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---CCeEEEEEccCc
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---DSRIRLYDLRDL  149 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~  149 (408)
                      .++++.+...........     ........+.|+||+++|+....   ...|+++|+.++
T Consensus       250 ~~~~lgt~~~~~~lv~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEE-----HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEETTSCGGGCEEEEEC-----CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEECCCCchhcEEEEec-----CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            888887654221111111     11124567899999999887653   456888998875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.62  E-value=0.00016  Score=60.78  Aligned_cols=240  Identities=10%  Similarity=-0.022  Sum_probs=133.5

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecCCEEEEEeccCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQL   99 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~   99 (408)
                      +.+..+|.+..+ ++. |+.+ ....|+..++......  ..+. ....+..++|.+.+..|+.. ...+.|..++.+..
T Consensus        32 ~~d~~~C~~~~~-~~~-ll~~-~~~~I~~i~~~g~~~~--~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           32 RPDRRSCKALGP-EPV-LLFA-NRIDIRQVLPHRSEYT--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             CTTSSCEEESSS-CCE-EEEE-CBSCEEEECTTSCCEE--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCccccccc-Cce-eEee-cccceEEEeCCCCeeE--Eeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            345556666666 443 4433 3456888888766544  2222 33457899999766655544 45688999998765


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .......  .      .......+++.+.+..|+.+ ...+.|.+.++........+..  .......++++|.+..|+.
T Consensus       106 ~~~~~~~--~------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~ly~  175 (349)
T 3v64_C          106 NVEEVVS--T------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYW  175 (349)
T ss_dssp             SCEEEEC--S------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT--TCSCEEEEEEETTTTEEEE
T ss_pred             CceEEEe--C------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC--CCCCcceEEEecCcCeEEE
Confidence            4322111  0      11245678888766666655 4567899999875433222222  2233567899986666655


Q ss_pred             eec-C-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeee
Q psy988          179 GSE-N-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI  256 (408)
Q Consensus       179 ~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (408)
                      ... . +.|..+++......             .+.                                  ...-.....+
T Consensus       176 td~~~~~~I~r~~~dG~~~~-------------~~~----------------------------------~~~~~~PnGl  208 (349)
T 3v64_C          176 TDWGNTPRIEASSMDGSGRR-------------IIA----------------------------------DTHLFWPNGL  208 (349)
T ss_dssp             EECSSSCEEEEEETTSCSCE-------------ESC----------------------------------CSSCSCEEEE
T ss_pred             eccCCCCEEEEEeCCCCCcE-------------EEE----------------------------------ECCCCCcceE
Confidence            543 3 56766665421100             000                                  0111234455


Q ss_pred             ccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          257 EPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       257 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +++|++..|+.+ ...+.|..+|+........+...  ......+++ ..+....+-...+.|..++..++
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence            555544444444 55678999997743332222221  223456666 34455555556778888875444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.60  E-value=0.00011  Score=57.90  Aligned_cols=216  Identities=13%  Similarity=0.067  Sum_probs=123.4

Q ss_pred             eeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC
Q psy988           61 NEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS  139 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  139 (408)
                      +.+.+-...+..++|+|+++.|+ +...++.|...|.. ++........   +    ......+++.+++.++++.-.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---g----~~D~EGIa~~~~g~~~vs~E~~~   91 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---F----VKDLETIEYIGDNQFVISDERDY   91 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---S----CSSEEEEEECSTTEEEEEETTTT
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---C----CCChHHeEEeCCCEEEEEECCCC
Confidence            35666667899999999866555 46677889999987 5544444321   1    13677888888886656655678


Q ss_pred             eEEEEEccCcccc---eeec----CccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccc
Q psy988          140 RIRLYDLRDLNLS---CKYK----GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK  212 (408)
Q Consensus       140 ~i~i~d~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
                      .+.++++.....+   ....    ........-.++|+|.++.|+++.+.....+|.+.. ...        ...+... 
T Consensus        92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~--------~~~l~i~-  161 (255)
T 3qqz_A           92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLS--------SNELHIS-  161 (255)
T ss_dssp             EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTC--------SSCCEEE-
T ss_pred             cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-ccc--------CCceeee-
Confidence            8999987654421   1111    011122345799999998888887766666666531 000        0000000 


Q ss_pred             cccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC-CeEEEecCCCeEEEEEcCCCeeeeEEeec
Q psy988          213 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE-DKILVTSNDSRIRLYDLRDLNLSCKYKGY  291 (408)
Q Consensus       213 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  291 (408)
                                ..+.   +              .-...-..+.+++++|.. ++++.......+..+|.. ++.+..+.-.
T Consensus       162 ----------~~~~---~--------------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~  213 (255)
T 3qqz_A          162 ----------KDKA---L--------------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT  213 (255)
T ss_dssp             ----------ECHH---H--------------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS
T ss_pred             ----------cchh---h--------------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC
Confidence                      0000   0              000011123445555533 345556777888888866 5555555432


Q ss_pred             cc-------eeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          292 VN-------VSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       292 ~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                      ..       ....-.++|.++|++.++ ++.+.++.+.-
T Consensus       214 ~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          214 KGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             TTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             CccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            11       123457999999985555 66666666643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=0.0001  Score=63.85  Aligned_cols=111  Identities=8%  Similarity=0.001  Sum_probs=68.8

Q ss_pred             eeEEEEEec-CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-C----eEE
Q psy988           69 LITAANFCE-NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-S----RIR  142 (408)
Q Consensus        69 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~  142 (408)
                      ....++++| ++..|+.+...+.|+.+|.++........         .......++++++++.|+++... +    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---------GLSKVRTICWTHEADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---------CCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence            457889998 45667666666889999988765432211         12468899999999977776541 1    344


Q ss_pred             EEEccCcccc--eeecCccccccceEEEEec-CCCEEEEeecCceEEEeeecc
Q psy988          143 LYDLRDLNLS--CKYKGYVNVSSQIKASFSH-DGKYIVSGSENQCIYIWKTHH  192 (408)
Q Consensus       143 i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  192 (408)
                      .++. .+...  ..+..   ......++++| ++..+++-..++.|+.++...
T Consensus       209 ~~~~-~g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          209 ILTR-ESGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             EEEG-GGTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             EEeC-CCceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            4443 33332  12221   12345688999 666555555677888888753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.56  E-value=0.00015  Score=59.98  Aligned_cols=178  Identities=10%  Similarity=-0.029  Sum_probs=110.2

Q ss_pred             ceEEEEeccCCe--eEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC-
Q psy988            3 KTVRLWHISRKE--CLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG-   79 (408)
Q Consensus         3 g~i~vwd~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-   79 (408)
                      ..|+..++++..  ....+.....+.+++|++.++.++++-...+.|..+++.++.... ..+...-.....+++.+.+ 
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcCCC
Confidence            468888887763  223333344677999998445555565567889999987764221 1122222346678888754 


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecC
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~  157 (408)
                      ...++-...+.|.+++.+.........        ........+++.|.+..|+.+..  .+.|...++.... ...+..
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~--------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~  162 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFW--------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN  162 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEe--------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE
Confidence            444555566899999987643222110        11235788999987777777653  5788888886433 222211


Q ss_pred             ccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  191 (408)
                       ........+++++++..|+.+. ..+.|..+|+.
T Consensus       163 -~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          163 -SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             -SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence             1223356799999777776664 45678888875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.54  E-value=0.00023  Score=58.84  Aligned_cols=228  Identities=9%  Similarity=-0.021  Sum_probs=126.3

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecCCEEEEEeccCC---eeeEEEEEeeccc
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQL---KYHTQIHVRSTRG  112 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~---~~~~~~~~~~~~~  112 (408)
                      +|+.+. ...|+..++.+.+...  .+. ....+..++|.+.+..|+.+ ...+.|..++..+.   ...... ..    
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~--~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~----   73 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTS--LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS----   73 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEE--EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-EC----
T ss_pred             EEEEEC-CCeEEEEECCCcceEe--hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-Ee----
Confidence            344443 3679999998876542  222 34457899999876555544 45689999998762   111111 10    


Q ss_pred             cccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC--ceEEEee
Q psy988          113 KNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN--QCIYIWK  189 (408)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d  189 (408)
                        ........+++.+.+..|+.+ ...+.|.++++...........  .......++++|.+..|+.+...  +.|..++
T Consensus        74 --~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           74 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             --SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             --CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence              011245788888766666655 5578999999875433222221  12345678999876666655432  5666666


Q ss_pred             eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-
Q psy988          190 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-  268 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  268 (408)
                      +......             .+                                  ....-.....++++|++..|+.+ 
T Consensus       150 ~dG~~~~-------------~~----------------------------------~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          150 LNGVDIY-------------SL----------------------------------VTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             TTSCCEE-------------EE----------------------------------ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCCeE-------------EE----------------------------------EECCCCCceEEEEeccCCEEEEEE
Confidence            5321100             00                                  00111234556666655555544 


Q ss_pred             cCCCeEEEEEcCCCeeeeEE-eeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          269 SNDSRIRLYDLRDLNLSCKY-KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       269 ~~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ...+.|..+|+.... ...+ ...........+++. .+.++.+-...+.|..++..++
T Consensus       183 ~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          183 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            556789999987433 3333 221111234566774 3555555566788888887554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.52  E-value=0.00055  Score=62.15  Aligned_cols=159  Identities=11%  Similarity=0.001  Sum_probs=94.7

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec--CCEEEEEeccCCe
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY--DGRCIFYTTDQLK  100 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~  100 (408)
                      .....+++.+.+++++++-...+.|.+.+++......  .....-.....+++.|.+.+|+....  .+.|...+++...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~  161 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS  161 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence            5678899998445555555667899999998765432  22233445778999997666665543  3577777766543


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      ......  .      .......+++.++++.|+.+. ..+.|..+|+............  ......+++..+ ..+++-
T Consensus       162 ~~~l~~--~------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td  230 (619)
T 3s94_A          162 RFIIIN--S------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTD  230 (619)
T ss_dssp             CEEEEC--S------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEEC
T ss_pred             eEEEEe--C------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEec
Confidence            222111  0      123678899999888887774 4678888888654333222211  122345666544 334444


Q ss_pred             ecCceEEEeeeccce
Q psy988          180 SENQCIYIWKTHHDY  194 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~  194 (408)
                      ...+.|...|..++.
T Consensus       231 ~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          231 WSTHSILACNKYTGE  245 (619)
T ss_dssp             TTTCSEEEEESSSCC
T ss_pred             CCCCEEEEEECCCCc
Confidence            456778888876553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.52  E-value=0.00028  Score=58.65  Aligned_cols=279  Identities=11%  Similarity=0.107  Sum_probs=135.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-ceeee-eecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK-VAVWN-EVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      ....+.++.|.+ .+..++ ++..|.| +...+.++ ..... ........+.++.|.+ +. ++.++..+.|.. ..+.
T Consensus        34 ~~~~~~~v~~~~-~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           34 TTATILDMSFID-RHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG  107 (327)
T ss_dssp             CSSCEEEEEESS-SSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred             CCCcEEEEEECC-CCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence            345799999987 666666 4566765 33344443 11111 1112244688899976 44 444556675544 2332


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      ++.-......     ......+..+.+.+++..++ ++.+|.|.. ....++.-...... ....+..+.+.+++.++++
T Consensus       108 G~tW~~~~~~-----~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~  179 (327)
T 2xbg_A          108 GQSWSQIPLD-----PKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV  179 (327)
T ss_dssp             TSSCEECCCC-----TTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE
T ss_pred             CCCceECccc-----cCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE
Confidence            3221111100     01123466777766555444 444554432 11223222222111 1224667888888877766


Q ss_pred             eecCceEEE-eeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          179 GSENQCIYI-WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       179 ~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +. +|.++. .|-. +            ..+..+.                                  ......+..+.
T Consensus       180 g~-~G~~~~S~d~g-G------------~tW~~~~----------------------------------~~~~~~~~~~~  211 (327)
T 2xbg_A          180 SS-RGSFYSTWEPG-Q------------TAWEPHN----------------------------------RTTSRRLHNMG  211 (327)
T ss_dssp             ET-TSSEEEEECTT-C------------SSCEEEE----------------------------------CCSSSCEEEEE
T ss_pred             EC-CCcEEEEeCCC-C------------CceeECC----------------------------------CCCCCccceeE
Confidence            64 444433 2210 0            0001000                                  01112233444


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec--cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccccc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY--VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR  335 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  335 (408)
                      +.++++.++ .+.+|.+++.+...++.-..+...  .....+..+.+.+++..++++. +|.| .+..+.+         
T Consensus       212 ~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG---------  279 (327)
T 2xbg_A          212 FTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG---------  279 (327)
T ss_dssp             ECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT---------
T ss_pred             ECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC---------
Confidence            555555444 345677776643323322222211  1112467888998888777765 6665 3333333         


Q ss_pred             Cccccceeee---eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          336 DRNDFWEGIK---AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       336 ~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                         +....+.   .+...+.++.|.+                ++. ++.++.+|.|.-++-
T Consensus       280 ---~tW~~~~~~~~~~~~~~~v~~~~----------------~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          280 ---QTWQQDVDVKKVPSNFYKILFFS----------------PDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ---SSCEECGGGTTSSSCCCEEEEEE----------------TTE-EEEECSTTEEEEECC
T ss_pred             ---cccEEcCccCCCCCCeEEEEEEC----------------CCc-eEEEcCCceEEEEcC
Confidence               1222222   1234577888875                554 556667998877764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.45  E-value=0.00053  Score=58.74  Aligned_cols=234  Identities=12%  Similarity=0.005  Sum_probs=127.8

Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcc----cceee
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLN----LSCKY  155 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~  155 (408)
                      +|+.+ ....|+..++..........         ....+..++|++.+..|+.+. ..+.|+.+++....    ....+
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~---------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc---------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence            44444 45788888888665432211         124688999999777777764 46789889886522    22222


Q ss_pred             cCccccccceEEEEecCCCEEE-EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          156 KGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                      ..  ....+..+++.+.+..|+ +-...+.|.+.++.......            .+.                      
T Consensus       155 ~~--~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~------------l~~----------------------  198 (400)
T 3p5b_L          155 SR--DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT------------LFR----------------------  198 (400)
T ss_dssp             CS--SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE------------EEE----------------------
T ss_pred             eC--CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE------------EEe----------------------
Confidence            21  122355688887444444 44456678777764321110            000                      


Q ss_pred             CCCCCCCceeeecCCCceeeeeccCCCCCeEEEec--CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                   .....+..+++.|.+.+|+...  ..+.|...++...........  .......+++++++..|+.+
T Consensus       199 -------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~--~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          199 -------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             -------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTEEEEE
T ss_pred             -------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC--CCCceEEEEEEeCCCEEEEE
Confidence                         1112234455555444444432  236788888764333322222  22355689999887777665


Q ss_pred             c-CCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEE
Q psy988          313 S-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF  391 (408)
Q Consensus       313 ~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw  391 (408)
                      . ..+.|..+++.....          ..+...........++++.                 .+.++.+....+.|..+
T Consensus       264 D~~~~~I~~~d~dG~~~----------~~~~~~~~~l~~P~gl~v~-----------------~~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNR----------KTILEDEKRLAHPFSLAVF-----------------EDKVFWTDIINEAIFSA  316 (400)
T ss_dssp             ETTTTEEEEEETTSCCC----------EEEEECSSTTSSEEEEEEE-----------------TTEEEEEESSSCSEEEE
T ss_pred             ECCCCEEEEEeCCCCcc----------EEEEeCCCCCCCCEEEEEe-----------------CCEEEEecCCCCeEEEE
Confidence            4 467899999865311          1111110111233466663                 45566676667888888


Q ss_pred             eCCCCCCcccc
Q psy988          392 LNKTKPKHSSL  402 (408)
Q Consensus       392 ~~~~~~~~~~~  402 (408)
                      +..+++....+
T Consensus       317 ~~~~G~~~~~i  327 (400)
T 3p5b_L          317 NRLTGSDVNLL  327 (400)
T ss_dssp             ESSSCCCCEEE
T ss_pred             EcCCCCceEEE
Confidence            87777655443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.42  E-value=0.0013  Score=61.38  Aligned_cols=231  Identities=9%  Similarity=-0.046  Sum_probs=124.1

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA  115 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  115 (408)
                      +|+.+ ....|+..++......   .+......+..++|.+....|+ +-...+.|+.+++.............    ..
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~  468 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SR  468 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----CS
T ss_pred             ccccc-cccceeEeeccCCcce---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE----ec
Confidence            34443 3467888888776554   2333345678999998555554 44456788888887532100000000    00


Q ss_pred             CCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeecc
Q psy988          116 TGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHH  192 (408)
Q Consensus       116 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  192 (408)
                      .......|++.+.++.|+.+ ...+.|.+.++........+..  .......+++.|.+.+|+.+..  .+.|...++..
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            12356778888877777766 4578999999875443222222  2233667899997666666543  25666666542


Q ss_pred             ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCC
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SND  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d  271 (408)
                      ....             .+                                  ....-..+..|++++.+..|+.+ ...
T Consensus       547 ~~~~-------------~l----------------------------------v~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          547 VDIY-------------SL----------------------------------VTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             CCEE-------------EE----------------------------------ECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CceE-------------EE----------------------------------EeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            1110             00                                  00111234556666555555554 456


Q ss_pred             CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeecccc
Q psy988          272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD  326 (408)
Q Consensus       272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~  326 (408)
                      +.|..+++........+...........|++.  +.+|+ +-...+.|...+..++
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence            78999998654443333322212233455553  33444 4445677877776555

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.41  E-value=0.00025  Score=61.44  Aligned_cols=156  Identities=15%  Similarity=0.185  Sum_probs=92.4

Q ss_pred             CeEEEeeCCC--CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeec
Q psy988          119 KISGIEPMPG--EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTH  191 (408)
Q Consensus       119 ~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~  191 (408)
                      ....+++.|+  +..|+++...+.|+.+|+.++.......   ....+..++++++|+ |+.+...+     .+..++..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            5678999984  5667776555889999998776544333   223366899999999 55554322     12222211


Q ss_pred             cceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC-CCCeEEEecC
Q psy988          192 HDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP-GEDKILVTSN  270 (408)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  270 (408)
                      ..                 +..   . ..+                          ........++++| ++..+++-..
T Consensus       216 ~~-----------------~~~---~-~~~--------------------------~~~~~P~giavd~~~G~lyv~d~~  248 (433)
T 4hw6_A          216 SG-----------------FTE---R-LSL--------------------------CNARGAKTCAVHPQNGKIYYTRYH  248 (433)
T ss_dssp             GT-----------------TCC---E-EEE--------------------------EECSSBCCCEECTTTCCEEECBTT
T ss_pred             CC-----------------eec---c-ccc--------------------------cccCCCCEEEEeCCCCeEEEEECC
Confidence            00                 000   0 000                          0123455677888 5655556567


Q ss_pred             CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE-ecCCceEEEeeccc
Q psy988          271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHH  325 (408)
Q Consensus       271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~  325 (408)
                      ++.|+.+|..++.....+...........++|+|+|++|+. -...+.|+.++...
T Consensus       249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            78999999887766333322211122346999999995554 44567899988753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.37  E-value=0.00069  Score=63.10  Aligned_cols=179  Identities=12%  Similarity=0.013  Sum_probs=110.8

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEecCCCE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      .|+..++...+..........+..|+|++.++.++++-...+.|+.+++.....  .....+.........|++.+.+..
T Consensus       405 ~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~  484 (791)
T 3m0c_C          405 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  484 (791)
T ss_dssp             SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc
Confidence            466666666655555556677889999984455555555668899999875321  111233323445678889877755


Q ss_pred             EE-EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCc
Q psy988           82 AV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        82 l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      |+ +-...+.|.+.+++.........        ........|++.|.+..|+.+..  .+.|...++........+.. 
T Consensus       485 LY~tD~~~~~I~v~~ldG~~~~~l~~--------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~-  555 (791)
T 3m0c_C          485 IYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-  555 (791)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEE--------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEe--------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-
Confidence            55 44556899999988654322221        11135789999998777777753  36788888875433322222 


Q ss_pred             cccccceEEEEecCCCEEEEee-cCceEEEeeecc
Q psy988          159 VNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHH  192 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (408)
                       .......+++++.+..|+.+. ....|..+++..
T Consensus       556 -~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          556 -NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence             223466799998777777664 345788887743

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.34  E-value=0.0009  Score=56.20  Aligned_cols=106  Identities=13%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeC-C-----
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSN-D-----  138 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----  138 (408)
                      .....++|.|+|++ +++..+|.|.+++  +++.....   ..............++++|+   +..|+++.. .     
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~---~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYA---ELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEE---ECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEee---cceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            34678999999985 4456679999998  33321111   11111112346889999998   666666543 2     


Q ss_pred             CeEEEEEccCccc-----c-eeecC-ccccccceEEEEecCCCEEEEe
Q psy988          139 SRIRLYDLRDLNL-----S-CKYKG-YVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       139 g~i~i~d~~~~~~-----~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      +.|..++......     + ..+.. .........++|.|+|...++.
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            5788888764321     1 11221 0111123468999999765554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.32  E-value=0.00019  Score=58.90  Aligned_cols=178  Identities=12%  Similarity=0.230  Sum_probs=108.4

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCC----CC---EEEEEeC---CCcEEEEecC--CCCceeeeeecC-----
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRD----DR---YFLSGSL---DGKLRLWNIP--DKKVAVWNEVEG-----   65 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~----~~---~l~t~~~---dg~i~iw~~~--~~~~~~~~~~~~-----   65 (408)
                      +-+.+||+ +|+.++.+.. +.++.+..-| +    ++   ++++...   +++|.+|++.  ++.+.   .+..     
T Consensus        50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~---~i~~~~~pv  123 (355)
T 3amr_A           50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ---SMTDPDHPI  123 (355)
T ss_dssp             TEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE---ECSCTTSCE
T ss_pred             CCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee---eccccccCc
Confidence            56899999 7888887754 6677777766 3    22   2333333   4789999774  44322   2211     


Q ss_pred             -Cc-eeeEEEEE--ecC-CC-EEEEEecCCEEEEEeccC---CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988           66 -QT-KLITAANF--CEN-GK-FAVVGSYDGRCIFYTTDQ---LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        66 -~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                       .. ..+..+++  +|. +. ++++...+|.+..|++..   +... ....+.+.    ..+.+..+...+....|+++-
T Consensus       124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~----lgsq~EgcvvDd~~g~Lyv~e  198 (355)
T 3amr_A          124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFK----MNSQTEGMAADDEYGRLYIAE  198 (355)
T ss_dssp             ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEE----CSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEec----CCCCcceEEEcCCCCeEEEec
Confidence             11 45666777  664 43 688888899999999843   2111 11122211    124788899999899999999


Q ss_pred             CCCeEEEEEcc-----CcccceeecCccccccceEEEE--ecCCC-EEEEee-cCceEEEeeec
Q psy988          137 NDSRIRLYDLR-----DLNLSCKYKGYVNVSSQIKASF--SHDGK-YIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       137 ~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~  191 (408)
                      ++..|..++.+     +++.+..+....-...+-.+++  .++++ +|++++ .+....+||.+
T Consensus       199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            98777777754     2334433322111112444555  55665 666666 46689999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.26  E-value=5.7e-06  Score=76.23  Aligned_cols=176  Identities=11%  Similarity=0.004  Sum_probs=102.6

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-eCCCcEEEEecCC----CCceeeeeecCCceeeEEEEEec
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-SLDGKLRLWNIPD----KKVAVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-~~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~   77 (408)
                      +.|++.++.+.+....+.....+..|+|++ .+..|+.+ ...+.|+.+++.+    ....  ..+.........+++.+
T Consensus       386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCEECCC
T ss_pred             cceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCcceEEEEe
Confidence            356677777666655554445678899998 55555544 4568899999875    2221  12222223355678875


Q ss_pred             CC-CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCccccee
Q psy988           78 NG-KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        78 ~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~  154 (408)
                      .+ +++++-...+.|.++++..........        ........+++.|.+.+|+.+..  .+.|..+++..... ..
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~  533 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS  533 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECC--------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEe--------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE
Confidence            44 444444556889999987654222111        01124577889987777766643  36788887754322 22


Q ss_pred             ecCccccccceEEEEecCCCEEEEee-cCceEEEeeec
Q psy988          155 YKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTH  191 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  191 (408)
                      +.. ........++++|++..|+.+. ..+.|..+++.
T Consensus       534 l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          534 LVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             ESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             EEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            211 1123355689998876665554 45678888874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0013  Score=54.34  Aligned_cols=230  Identities=13%  Similarity=0.018  Sum_probs=127.1

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA  115 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  115 (408)
                      +|+.+. ...|+..++....... ..+......+.++.|.+.+..|+ +-...+.|..++..+...........      
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~-~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~------   77 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG------   77 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCC-EEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC------
T ss_pred             EEEEEc-cCeEEEEECCCCceEE-EEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC------
Confidence            344433 4679999998764221 12222234577899998655554 44556889999987653211111111      


Q ss_pred             CCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeecc
Q psy988          116 TGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHH  192 (408)
Q Consensus       116 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  192 (408)
                       -.....+++.+.+..|+.+ ...+.|.++++...........  .......+++.|.+..|+.+..  .+.|...++..
T Consensus        78 -l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A           78 -LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             -CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             -CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence             1246678888766666655 4567899999875432222222  2233567899987666666552  45666666532


Q ss_pred             ceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCC
Q psy988          193 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SND  271 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d  271 (408)
                      ....             .+                                  ....-.....++++|++..|+.+ +..
T Consensus       155 ~~~~-------------~~----------------------------------~~~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          155 SSRF-------------II----------------------------------INSEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             CSCE-------------EE----------------------------------ECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCeE-------------EE----------------------------------EECCCCCccEEEEeccCCEEEEEECCC
Confidence            1100             00                                  00111234556666655545544 566


Q ss_pred             CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      +.|..+|+............  ......+++.. +.++.+-...+.|..++..++.
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence            88999998743332222211  22344666643 3444555567889988886653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.24  E-value=0.0027  Score=57.76  Aligned_cols=177  Identities=8%  Similarity=0.013  Sum_probs=106.3

Q ss_pred             ceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCE
Q psy988            3 KTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKF   81 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (408)
                      +.|..+++........+. -......+++.+.+++++++-...+.|.+.+++......  .....-.....+++.|...+
T Consensus        59 ~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~iavdp~~G~  136 (628)
T 4a0p_A           59 KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV--LVWKDLDSPRALALDPAEGF  136 (628)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE--EECSSCCCEEEEEEETTTTE
T ss_pred             CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE--EEeCCCCCcccEEEccCCCe
Confidence            445555554433333333 224567888887355556666667889999987654332  22233345789999986555


Q ss_pred             EEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCc
Q psy988           82 AVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        82 l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      |+....  .+.|...+++.........         .......++++++++.|+.+. ..+.|..+|+..... ..+...
T Consensus       137 lY~tD~g~~~~I~r~~~dG~~~~~l~~---------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~  206 (628)
T 4a0p_A          137 MYWTEWGGKPKIDRAAMDGSERTTLVP---------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD  206 (628)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC
T ss_pred             EEEeCCCCCCEEEEEeCCCCceEEEEC---------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc
Confidence            655542  5678888877654322211         123678999999888888874 467899999875443 233221


Q ss_pred             cccccceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                        ......+++.. +..+++-...+.|...|..++.
T Consensus       207 --l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          207 --LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             --CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             --CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence              22345666654 3344444457788888865543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.24  E-value=0.0015  Score=54.81  Aligned_cols=233  Identities=11%  Similarity=0.044  Sum_probs=118.9

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeC----C--
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSN----D--  138 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d--  138 (408)
                      .....++|.|+|+ |+++..+|.|++++. +++  ...  ...............++++|+   +..|+++..    +  
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~--~~~--~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK--KLV--ASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE--EEE--EECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc--eEe--eccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            3468899999998 555566799999973 333  111  111111112246889999997   666666543    2  


Q ss_pred             --CeEEEEEccCc--c---c--c-eeecCccccccceEEEEecCCCEEEEeecC-------------ceEEEeeecccee
Q psy988          139 --SRIRLYDLRDL--N---L--S-CKYKGYVNVSSQIKASFSHDGKYIVSGSEN-------------QCIYIWKTHHDYA  195 (408)
Q Consensus       139 --g~i~i~d~~~~--~---~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~  195 (408)
                        +.|..|+....  .   .  + ..+... .......++|.|||...++.+..             |.|.-++....  
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~--  179 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR--  179 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC--
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC--
Confidence              56777877643  1   1  1 111111 11123468999999866654321             34444443211  


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeC-CcceeeeecCCCCCC--------------------------CceeeecC
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAP-CPELIIAQMEPDKSE--------------------------STGYVLNA  248 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~--------------------------~~~~~~~~  248 (408)
                      ...   .........+...-.....++|+| ++...++........                          .....+..
T Consensus       180 ~p~---~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          180 PPA---DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             CCT---TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCC---CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            000   000000011111112235688888 565554432221100                          01111111


Q ss_pred             CCceeeeeccC-------CCCCeEEEecCCCeEEEEEcCCC-eee--eEEeeccceeceeEEEEcCCCCEEEEec
Q psy988          249 TGRKISGIEPM-------PGEDKILVTSNDSRIRLYDLRDL-NLS--CKYKGYVNVSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       249 ~~~~i~~~~~~-------~~~~~l~~~~~d~~i~i~d~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~  313 (408)
                      ....+..++|.       .+|.++++....+.|...++... +..  ..+.. .....+..+++.|||.+.++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence            23346667763       46777777677788888888753 222  12211 1134677899999997666653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.17  E-value=0.0067  Score=59.22  Aligned_cols=94  Identities=15%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             ceEEEEeccCCeeEe--EEEeCCceEEEEEcCC-----CCCEEEEEeC-CCcEEEEecCCCCceeeeeecC--CceeeEE
Q psy988            3 KTVRLWHISRKECLC--CFQHIDFVTAICFHPR-----DDRYFLSGSL-DGKLRLWNIPDKKVAVWNEVEG--QTKLITA   72 (408)
Q Consensus         3 g~i~vwd~~~~~~~~--~~~h~~~v~~~~~sp~-----~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~--~~~~v~~   72 (408)
                      +.+.++.++.++...  ...-.+.|.|+++.|.     ..++++.|.. |++|+|+++.+.+......+..  -...+.-
T Consensus       532 ~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l  611 (1158)
T 3ei3_A          532 RALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILM  611 (1158)
T ss_dssp             TEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEE
T ss_pred             CEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEE
Confidence            455666666554322  2235678999999862     1478999997 9999999998766554344432  2233333


Q ss_pred             EEEecCCCEEEEEecCCEEEEEecc
Q psy988           73 ANFCENGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~dg~i~iw~~~   97 (408)
                      +.+ ....+|..|-.||.+.-+.++
T Consensus       612 ~~~-~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          612 TTF-ESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             EEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred             EEe-CCCcEEEEEeCCCeEEEEEEc
Confidence            333 234678899999998776655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.16  E-value=1.8e-05  Score=73.03  Aligned_cols=226  Identities=9%  Similarity=-0.048  Sum_probs=117.7

Q ss_pred             CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           44 DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        44 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      .+.|+..++.+.....  .+ .....+..++|.+.+..|+.+. ..+.|+.+++.+......  ....  ..........
T Consensus       385 ~~~I~~id~~~~~~~~--~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--~~~~--i~~~~~~P~g  457 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS--LI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--YDTV--ISRDIQAPDG  457 (699)
T ss_dssp             TTC-CEECTTSCCEEC--CS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--CCCB--CCSCC--CCC
T ss_pred             ccceEEEeCCCCccee--ee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--eEEE--EeCCCCCcce
Confidence            3678888887765442  22 2223467889998776666554 457888888775110000  0000  0001123456


Q ss_pred             EeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeeccceeeeee
Q psy988          123 IEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHHDYAKFSS  199 (408)
Q Consensus       123 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~  199 (408)
                      +++.+.+..|+.+ ...+.|.++++........+..  .......++++|.+.+|+.+..  .+.|..+++......   
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~--~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---  532 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---  532 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC--SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC--CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---
Confidence            7887656566555 4567899999875433222221  1123456788886665555442  256666655321000   


Q ss_pred             cccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEE
Q psy988          200 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYD  278 (408)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d  278 (408)
                                .                                  +....-.....|+++|++..|+.+ ...+.|..++
T Consensus       533 ----------~----------------------------------l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d  568 (699)
T 1n7d_A          533 ----------S----------------------------------LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  568 (699)
T ss_dssp             ----------E----------------------------------ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred             ----------E----------------------------------EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence                      0                                  000111234567777765555444 5668899999


Q ss_pred             cCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          279 LRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +........+...........+++..+ .++++-...+.|..++..++
T Consensus       569 ~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          569 VNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             SSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             cCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            874333222221111112334555443 34445556678998887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.16  E-value=0.0015  Score=53.75  Aligned_cols=208  Identities=13%  Similarity=0.183  Sum_probs=113.6

Q ss_pred             CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec----CCCE--EE-Eeec---CceEEEeeeccceeeee
Q psy988          129 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH----DGKY--IV-SGSE---NQCIYIWKTHHDYAKFS  198 (408)
Q Consensus       129 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~-~~~~---dg~i~i~d~~~~~~~~~  198 (408)
                      ...++.....+-+.+||+ +++.++.+..    ..+..+..-|    .|+.  ++ +...   +++|.+|++........
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            445666677789999999 7887777753    1133344333    3332  33 3333   46899997742111111


Q ss_pred             ecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc--CCC-CC-eEEEecCCCeE
Q psy988          199 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP--MPG-ED-KILVTSNDSRI  274 (408)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~d~~i  274 (408)
                      .           +.....++                            ...-..+..+|+  +|. ++ ++++...+|.+
T Consensus       115 ~-----------i~~~~~pv----------------------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~  155 (355)
T 3amr_A          115 S-----------MTDPDHPI----------------------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEF  155 (355)
T ss_dssp             E-----------CSCTTSCE----------------------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEE
T ss_pred             e-----------ccccccCc----------------------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeE
Confidence            0           00000000                            000123444555  553 33 56777888999


Q ss_pred             EEEEcC-------CCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee-e
Q psy988          275 RLYDLR-------DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-A  346 (408)
Q Consensus       275 ~i~d~~-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~  346 (408)
                      ..|++.       +.+.++++...   ..+-.+...+...+|+.+-++..|..++.+....       .....+..+. +
T Consensus       156 ~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-------~~~~~v~~~~~g  225 (355)
T 3amr_A          156 EQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-------SNGTVIDRADGR  225 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-------SCCEEEEEBSSS
T ss_pred             EEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-------CCceEEEEecCC
Confidence            999983       33556666543   2456788899889999999986655555332110       0012222221 1


Q ss_pred             -eccceEEEEecCCchhhhhccCCCCCCCccc-EEEEEe-cCCeEEEEeCC-CCCCcccccc
Q psy988          347 -HNAVVTCAVFAPCPELIIAQMEPDKSESTGY-VLVSAD-FNGVIRVFLNK-TKPKHSSLPV  404 (408)
Q Consensus       347 -h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~v~iw~~~-~~~~~~~~~~  404 (408)
                       ....+..|+.-+..              +++ +|++++ .+.++.+||.. +.+....+++
T Consensus       226 ~l~aDvEGLai~~~~--------------~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I  273 (355)
T 3amr_A          226 HLTRDIEGLTIYYAA--------------DGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI  273 (355)
T ss_dssp             SBCSCEEEEEEEECG--------------GGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             ccccCcceEEEEecC--------------CCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence             22367888884310              444 444444 57899999996 5555555543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.15  E-value=0.00026  Score=57.58  Aligned_cols=166  Identities=5%  Similarity=0.040  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC------CceeeEEEEE---ecCCCEEEEEec--------
Q psy988           25 VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG------QTKLITAANF---CENGKFAVVGSY--------   87 (408)
Q Consensus        25 v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~l~~~~~--------   87 (408)
                      -.+++|++.++.++++.-..++|..|+...+..... .+.+      ....+..+.|   .|+++++++...        
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            456889884454444444789999999986654432 2322      1124689999   688777775432        


Q ss_pred             -----CCEEEEEecc---CCeeeEEEEEeecccc----cc-CCCCeEEEeeCCCCCeEEEeeCC-CeEEEEEccCcccce
Q psy988           88 -----DGRCIFYTTD---QLKYHTQIHVRSTRGK----NA-TGRKISGIEPMPGEDKILVTSND-SRIRLYDLRDLNLSC  153 (408)
Q Consensus        88 -----dg~i~iw~~~---~~~~~~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~  153 (408)
                           +..+..+|+.   +++......+......    .+ .......++..++|+..++++.. +.|...+........
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~  173 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST  173 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence                 6789999998   6766555543221110    00 11258899999999999988887 887777766432221


Q ss_pred             ee-cC--ccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          154 KY-KG--YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       154 ~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                      -+ ..  .........++++|+|+.|++....|.+..+|+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            11 11  1112235579999999998888779999999986

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.10  E-value=0.0022  Score=52.17  Aligned_cols=143  Identities=11%  Similarity=0.127  Sum_probs=97.6

Q ss_pred             CceEEEEeccCCeeEeE-EEe-------CCceEEEEE---cCCCCCEEEEEeC-------------CCcEEEEecC---C
Q psy988            2 DKTVRLWHISRKECLCC-FQH-------IDFVTAICF---HPRDDRYFLSGSL-------------DGKLRLWNIP---D   54 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~-~~h-------~~~v~~~~~---sp~~~~~l~t~~~-------------dg~i~iw~~~---~   54 (408)
                      .++|..||...+..... +..       ...+..|.|   .| +++++++...             +..|..+|+.   +
T Consensus        34 ~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t  112 (334)
T 2p9w_A           34 KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN  112 (334)
T ss_dssp             TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred             CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence            57899999876644333 212       113578999   68 7777775431             5779999999   7


Q ss_pred             CCceeeeeecCC-----------ceeeEEEEEecCCCEEEEEecC-CEEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           55 KKVAVWNEVEGQ-----------TKLITAANFCENGKFAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        55 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      ++......+...           ......++..++|+..++++.. +.|...+.+.... ........  ........+.
T Consensus       113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~~~--~~~~~~G~nG  189 (334)
T 2p9w_A          113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-STFAWESG--NGGQRPGYSG  189 (334)
T ss_dssp             CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-EEEEECCC--CSSSCCSCSE
T ss_pred             CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-eeeeecCC--CcccccCcce
Confidence            766544444322           1358899999999999999988 8888887765532 22211111  1112235789


Q ss_pred             EeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988          123 IEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      |+++|+++.|++....|.|..+|+.+
T Consensus       190 Iv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          190 ITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            99999999999987799999999884

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0045  Score=53.89  Aligned_cols=114  Identities=6%  Similarity=-0.013  Sum_probs=69.2

Q ss_pred             eEEEEEec-CCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEee-------CCCCCeEEEeeCCC-
Q psy988           70 ITAANFCE-NGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP-------MPGEDKILVTSNDS-  139 (408)
Q Consensus        70 v~~~~~~~-~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg-  139 (408)
                      ...|+|.| ++..|+.+.. .+.|++.|.++..........     .........++|       +++++.|+++...+ 
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-----TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-----TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-----ccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            56889998 3555555544 467888888877654332210     011235889999       99999777775543 


Q ss_pred             ------eEEEEEccC-cccc-----eeecCccccccceEEEEecCCCE-EEEeecCceEEEeeec
Q psy988          140 ------RIRLYDLRD-LNLS-----CKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTH  191 (408)
Q Consensus       140 ------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~  191 (408)
                            .|.+++... +...     ..+..   ......++++|++.. +++-..++.|+.+|+.
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CcccCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence                  266666433 2222     12221   123456788995545 4455567789999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.03  E-value=0.0036  Score=51.27  Aligned_cols=148  Identities=9%  Similarity=0.109  Sum_probs=76.9

Q ss_pred             CCCEEEEEe-CC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCe--
Q psy988           34 DDRYFLSGS-LD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLK--  100 (408)
Q Consensus        34 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~--  100 (408)
                      ++.+++.|+ .+     ..+.+||..+.+......+.........+  ..++..++.|+.+     ..+.+||..+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            556777777 33     47889998887654333222221112222  2366777777755     468899988765  


Q ss_pred             -eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCcccceeecCccccccceEEEEecCCC
Q psy988          101 -YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (408)
                       ....   .......   .....+.+  ++..++.|+.+     ..+.+||+.+.+-...-.........  .+...+++
T Consensus        92 ~W~~~---~~~p~~r---~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~~~~~~  161 (301)
T 2vpj_A           92 VWYSV---APMNVRR---GLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA--GLVVASGV  161 (301)
T ss_dssp             CCEEE---CCCSSCC---BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC--EEEEETTE
T ss_pred             eeEEC---CCCCCCc---cceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc--eEEEECCE
Confidence             3322   1111111   11122222  46666666543     46889998876543321111111111  12223677


Q ss_pred             EEEEeecC-----ceEEEeeeccc
Q psy988          175 YIVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       175 ~l~~~~~d-----g~i~i~d~~~~  193 (408)
                      .++.|+.+     ..+.+||+.+.
T Consensus       162 iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          162 IYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEEECCCCCCcccceEEEEeCCCC
Confidence            77777654     35777776553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.02  E-value=0.0043  Score=51.65  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=92.1

Q ss_pred             ceEEEEEcCCCCCEEEEEe------------CCCcEEEEecCC--CCceeeeeecC-----CceeeEEEEEec--CCC-E
Q psy988           24 FVTAICFHPRDDRYFLSGS------------LDGKLRLWNIPD--KKVAVWNEVEG-----QTKLITAANFCE--NGK-F   81 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~------------~dg~i~iw~~~~--~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~   81 (408)
                      ..-.+...| +|..+++++            .+|.|.++|.++  .+...+ .+.+     .......+.+.+  ++. +
T Consensus        51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            456677888 776555542            689999999874  333322 2222     223566777766  453 4


Q ss_pred             EEEEe-c--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-----------------CCCeE
Q psy988           82 AVVGS-Y--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-----------------NDSRI  141 (408)
Q Consensus        82 l~~~~-~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i  141 (408)
                      |+++. .  +.++.+|+++........ .....+.  .-...+.+.+.++|...++..                 ..|.|
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~-~~~~~g~--~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLH-LKTIRHK--LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEE-EEEECCT--TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEE-EeccccC--CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence            44443 2  467888887654322221 2222221  224688999999887666543                 12445


Q ss_pred             EEEEccCcccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeecc
Q psy988          142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHH  192 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (408)
                      .-+|.  ++......   .......++|+||++.|+.+. ..+.|+.|++..
T Consensus       206 yr~d~--~~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          206 TYYSP--NDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEECT--TCCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEEEC--CeEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            55554  32222111   223356799999999887765 467899999863

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.00  E-value=0.005  Score=51.88  Aligned_cols=269  Identities=12%  Similarity=0.088  Sum_probs=156.3

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV   83 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   83 (408)
                      +|.|-|+.++....  ...-.--+.-.+| ..+.+|-=. ..++.|+|+++........+.   ..|.-=.|-.+.. |+
T Consensus        49 ~vvIiDl~~~~~~~--rrpi~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~~-l~  120 (494)
T 1bpo_A           49 QVVIIDMNDPSNPI--RRPISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNT-VA  120 (494)
T ss_dssp             EEEEEETTSTTSCE--EEECCCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETTE-EE
T ss_pred             eEEEEECCCCCcce--ecccccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecCCCe-EE
Confidence            45566665544432  1222234566788 778777665 589999999988765333322   2455555654433 44


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-------CCCeEEEEEccCcccceeec
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-------NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~  156 (408)
                      .. .+..|.-|+++..........+... .  ....|..-..+++.++++..+       -.|.+.+|..+.+ ..+.+.
T Consensus       121 lV-T~taVyHWsi~~~s~P~kvFdR~~~-L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie  195 (494)
T 1bpo_A          121 LV-TDNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE  195 (494)
T ss_dssp             EE-CSSEEEEEESSSSCCCEEEEECCGG-G--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC
T ss_pred             EE-cCCeeEEecccCCCCchhheecchh-c--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe
Confidence            33 3568999999864433332222111 1  235788888899999877543       2467889988754 344556


Q ss_pred             CccccccceEEEEecCC-----CEEEEeec---CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          157 GYVNVSSQIKASFSHDG-----KYIVSGSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~-----~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                      +|...  .  ..+-.+|     +.+..+..   .+.+++.++.....         +     -.........+.|.|+  
T Consensus       196 Ghaa~--F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~---------~-----~~~f~kk~vdv~fppe--  255 (494)
T 1bpo_A          196 GHAAS--F--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT---------G-----NQPFPKKAVDVFFPPE--  255 (494)
T ss_dssp             CSEEE--E--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT---------T-----CCCCCCEEEECCCCTT--
T ss_pred             eeeee--e--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc---------C-----CCCccceeeeeeCCcc--
Confidence            65432  1  1222222     12333322   26777777743100         0     0111222334444443  


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  308 (408)
                                         .......++..++....++.-+.-|.|.+||+.++.++..-+-...  .+...+......-
T Consensus       256 -------------------~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~G  314 (494)
T 1bpo_A          256 -------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAG  314 (494)
T ss_dssp             -------------------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTE
T ss_pred             -------------------cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCc
Confidence                               2344566777888888888899999999999999998877664433  4444445555455


Q ss_pred             EEEecCCceEEEeecccc
Q psy988          309 IVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       309 l~~~~~dg~i~iw~~~~~  326 (408)
                      ++.....|.|.--.++..
T Consensus       315 i~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          315 IIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEETTCEEEEEEECTT
T ss_pred             EEEEccCceEEEEEEccc
Confidence            555667888777777654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.96  E-value=0.0059  Score=51.23  Aligned_cols=106  Identities=14%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc--eeec-CccccccceEEEEecC---CCEEEEeecC------ceEE
Q psy988          119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS--CKYK-GYVNVSSQIKASFSHD---GKYIVSGSEN------QCIY  186 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~---~~~l~~~~~d------g~i~  186 (408)
                      ....++|.|+++ ++++...|.|++++  +++..  ..+. ..........++++|+   +..|+++...      +.|.
T Consensus        32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            567899999997 55556679999998  33321  1111 1112234678999998   5566555432      5677


Q ss_pred             EeeeccceeeeeecccCCCccccccc---cccceEEEEEEeCCcceeeee
Q psy988          187 IWKTHHDYAKFSSVRRDRNDFWEGIK---AHNAVVTCAVFAPCPELIIAQ  233 (408)
Q Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~  233 (408)
                      .|+...+.....      ...+..+.   ........++|.|+|...++.
T Consensus       109 r~~~~~~~~~~~------~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLD------RVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSSCEEEE------EEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcCce------EEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            787764211000      00111111   111123578999999666554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.96  E-value=0.0039  Score=51.10  Aligned_cols=148  Identities=9%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC-----CEEEEEeccCCeeeEE
Q psy988           34 DDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQ  104 (408)
Q Consensus        34 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~  104 (408)
                      ++.+++.|+.+    ..+..||+.+.+......+......-..+.  -++..++.|+.+     ..+.+||..+.+....
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34566666653    468889988776543322222111112222  267777777754     3588899887764332


Q ss_pred             EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC-----eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988          105 IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS-----RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      .   ......   .....+.+  ++..++.|+.++     .+.+||+.+.+-...-....... -.++ ...+++.++.|
T Consensus        93 ~---~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~-~~~~~~iyv~G  162 (302)
T 2xn4_A           93 A---NMRDRR---STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS-SVGV-GVVGGLLYAVG  162 (302)
T ss_dssp             C---CCSSCC---BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB-SCEE-EEETTEEEEEC
T ss_pred             C---CCCccc---cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc-CceE-EEECCEEEEEe
Confidence            2   111111   11122222  466667776543     57788887765433211111111 1112 22366666776


Q ss_pred             ecC-------ceEEEeeeccc
Q psy988          180 SEN-------QCIYIWKTHHD  193 (408)
Q Consensus       180 ~~d-------g~i~i~d~~~~  193 (408)
                      +.+       ..+.+||+.+.
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTT
T ss_pred             CCCCCCCccccEEEEEeCCCC
Confidence            643       24677777553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.92  E-value=0.0071  Score=50.77  Aligned_cols=58  Identities=7%  Similarity=-0.017  Sum_probs=36.7

Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEEEEec-CCceE
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSGS-ENQCI  318 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i  318 (408)
                      ++.++++....+.|...++..++........ .....+..+++.|||.+.++.. .+|.|
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            4667777777788888888766543332211 1123678899999998766533 34543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.89  E-value=0.013  Score=53.17  Aligned_cols=341  Identities=8%  Similarity=-0.047  Sum_probs=167.9

Q ss_pred             ceEEEEeccCCeeEeEE-EeCCceEEEEEcCCCCCEEEEEe-CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            3 KTVRLWHISRKECLCCF-QHIDFVTAICFHPRDDRYFLSGS-LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      +.|.+.+++........ ..-.....|++.|.++.+++|-. ..+.|...+++......  .....-.....+++.+++.
T Consensus       106 ~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~--l~~~~~~~P~Glald~~~~  183 (619)
T 3s94_A          106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSEIYWPNGLTLDYEEQ  183 (619)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECSSCSSEEEEEEETTTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE--EEeCCCCCCcEEEEEccCC
Confidence            45666676654433333 24455778999994454444432 24667777776554432  2222344578999998766


Q ss_pred             EEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCc
Q psy988           81 FAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      .|+.+. ..+.|...+++.........     ..   .....++++..+  .++.+ ...+.|...|..+++....+...
T Consensus       184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~-----~~---~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~  253 (619)
T 3s94_A          184 KLYWADAKLNFIHKSNLDGTNRQAVVK-----GS---LPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSD  253 (619)
T ss_dssp             EEEEEETTTCCEEEESSSCCEEC-----------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSC
T ss_pred             EEEEEeCCCCeEEEecCCCCccEEEEe-----CC---CCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecC
Confidence            666654 45688888887644322111     00   112345666544  55555 44678888888776543322111


Q ss_pred             cc-----------------------cccceEEEE-ecC----------C---------------CEEEEeecCceEEEee
Q psy988          159 VN-----------------------VSSQIKASF-SHD----------G---------------KYIVSGSENQCIYIWK  189 (408)
Q Consensus       159 ~~-----------------------~~~~~~~~~-~~~----------~---------------~~l~~~~~dg~i~i~d  189 (408)
                      ..                       ......+++ +|.          |               .+|+.+ ..+.|+..+
T Consensus       254 ~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~  332 (619)
T 3s94_A          254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRIS  332 (619)
T ss_dssp             CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEE
T ss_pred             CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEe
Confidence            00                       000111111 111          1               011111 122333333


Q ss_pred             eccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC--------CCCceeeecCCCceeeeeccCCC
Q psy988          190 THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK--------SESTGYVLNATGRKISGIEPMPG  261 (408)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~  261 (408)
                      +.....         ......+ ..-.....+++.+.+..+...-....        ......+....-..+..+++.+.
T Consensus       333 l~~~~~---------~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~  402 (619)
T 3s94_A          333 LDTPDF---------TDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV  402 (619)
T ss_dssp             SSSTTC---------CCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred             cCCCcc---------ceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence            322110         0000001 11234667888886555544321111        11112223333356778888875


Q ss_pred             CCeEEE-ecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec--CCceEEEeeccccCccccccccCcc
Q psy988          262 EDKILV-TSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       262 ~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      ++.|+. -+..+.|.+.++.... ...+.. ........+++.|...+|+...  ....|...++....           
T Consensus       403 ~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~-----------  469 (619)
T 3s94_A          403 ARNLYWTDTGTDRIEVTRLNGTM-RKILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD-----------  469 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS-CEEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----------
T ss_pred             cCcEEEEeCCCCcEEEEeCCCCe-EEEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc-----------
Confidence            554444 4667899999987543 333322 1233567899999755555443  23566666665421           


Q ss_pred             ccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE-EEecCCeEEEEeCCCC
Q psy988          339 DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV-SADFNGVIRVFLNKTK  396 (408)
Q Consensus       339 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~v~iw~~~~~  396 (408)
                       ........-...+.+++++                +++.|. +-+..+.|...++...
T Consensus       470 -~~~l~~~~l~~P~GlalD~----------------~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          470 -RVVLVNTSLGWPNGLALDY----------------DEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             -CEEEECSSCSCEEEEEEET----------------TTTEEEEEETTTTEEEEEESSSC
T ss_pred             -cEEEEeCCCCCCeeeEEcc----------------cCCEEEEEECCCCEEEEEecCCC
Confidence             1111111234567889987                333443 3344566777776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.85  E-value=0.008  Score=49.32  Aligned_cols=147  Identities=10%  Similarity=0.028  Sum_probs=77.6

Q ss_pred             CCEEEEEeC--CCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC----CEEEEEeccCCeeeEEEEEe
Q psy988           35 DRYFLSGSL--DGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD----GRCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        35 ~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~  108 (408)
                      +.+++.|+.  ...+.+||..+++......+.........+.  -++..++.|+.+    ..+.+||..+.+......  
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~--   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG--   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC--
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC--
Confidence            445666665  3578999998876553333322222222222  366777777754    678899998876543322  


Q ss_pred             eccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988          109 STRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                       .....   .....+.+  ++..++.|+.+      ..+.+||+.+.+-...-........ .++ ...+++.++.|+.+
T Consensus        88 -~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           88 -PPTPR---DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGM-VEANGLIYVCGGSL  159 (306)
T ss_dssp             -CSSCC---BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCEE
T ss_pred             -CCccc---cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEE-EEECCEEEEECCCC
Confidence             11111   11122222  56666777654      4688999987654332111111111 112 22366666666542


Q ss_pred             ---------ceEEEeeeccc
Q psy988          183 ---------QCIYIWKTHHD  193 (408)
Q Consensus       183 ---------g~i~i~d~~~~  193 (408)
                               ..+.+||+.+.
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTT
T ss_pred             CCCCcccccceEEEeCCCCC
Confidence                     34677777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.85  E-value=0.0077  Score=49.41  Aligned_cols=177  Identities=12%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             ceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            3 KTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      ..+.+||..+.+-...-.  ....-.++.. - ++.+++.|+.+    ..+.+||..+.+......+.........+.  
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--   99 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--   99 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--
Confidence            357788888766443321  1111112222 2 66778888765    678899998876554333332222222222  


Q ss_pred             cCCCEEEEEecC------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---------CCeE
Q psy988           77 ENGKFAVVGSYD------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---------DSRI  141 (408)
Q Consensus        77 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i  141 (408)
                      -+++.++.|+.+      ..+.+||..+.+.....   ......   .....+.+  ++..++.|+.         -..+
T Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  171 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQR---CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSC  171 (306)
T ss_dssp             ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCC---BSCEEEEE--TTEEEEECCEESCTTTCEECCCE
T ss_pred             ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCc---ceeEEEEE--CCEEEEECCCCCCCCcccccceE
Confidence            267777777765      46889998887653321   111111   11122222  4556666643         3458


Q ss_pred             EEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988          142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  193 (408)
                      .+||+.+.+-...-....... -.++ ..-+++.++.|+.+     ..+.+||+.+.
T Consensus       172 ~~yd~~~~~W~~~~~~p~~r~-~~~~-~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          172 EVYDPATETWTELCPMIEARK-NHGL-VFVKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             EEEETTTTEEEEECCCSSCCB-SCEE-EEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             EEeCCCCCeEEECCCccchhh-cceE-EEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            899998765332211111111 1122 22266777777654     35777777653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.80  E-value=0.0098  Score=48.65  Aligned_cols=176  Identities=11%  Similarity=0.068  Sum_probs=92.7

Q ss_pred             eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCC---ceeeeeecCCceeeEEE
Q psy988            4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKK---VAVWNEVEGQTKLITAA   73 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~---~~~~~~~~~~~~~v~~~   73 (408)
                      .+.+||+.+.+-...-.  ....-.+++. . ++.+++.|+.+     ..+.+||..+.+   ......+.........+
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            57778887765433222  1111122222 2 67778888765     468999998877   54333332222222222


Q ss_pred             EEecCCCEEEEEecC-----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEE
Q psy988           74 NFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRL  143 (408)
Q Consensus        74 ~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i  143 (408)
                      .+  +++.++.|+.+     ..+.+||..+.+........   ...   .....+.+  ++..++.|+.+     ..+.+
T Consensus       110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  179 (301)
T 2vpj_A          110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ---TAR---EGAGLVVA--SGVIYCLGGYDGLNILNSVEK  179 (301)
T ss_dssp             EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS---SCC---BSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred             EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC---CCc---ccceEEEE--CCEEEEECCCCCCcccceEEE
Confidence            22  67777777654     46889998887654432211   111   11122222  56666776643     46889


Q ss_pred             EEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988          144 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       144 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  193 (408)
                      ||+.+.+-...-........  ..+...+++.++.|+.+     ..+.+||+.+.
T Consensus       180 ~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          180 YDPHTGHWTNVTPMATKRSG--AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeCCCCcEEeCCCCCccccc--ceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            99887654332111111111  11222366777777664     35778887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.74  E-value=0.014  Score=48.64  Aligned_cols=213  Identities=12%  Similarity=0.160  Sum_probs=106.2

Q ss_pred             eeEEEEEecCCCEEEEE------------ecCCEEEEEeccCCee-eEEEEEeeccccccCCCCeEEEeeCC--CCC-eE
Q psy988           69 LITAANFCENGKFAVVG------------SYDGRCIFYTTDQLKY-HTQIHVRSTRGKNATGRKISGIEPMP--GED-KI  132 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~l  132 (408)
                      ....+...|+|..++++            ..+|.|.++|.++... ...+..... ......-....+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEEE
Confidence            34556677877655554            2689999999874322 122222110 0111123566677655  343 45


Q ss_pred             EEee---CCCeEEEEEccCccc----ceeecCccccccceEEEEecCCCEEEEeec---CceEEEeeeccceeeeeeccc
Q psy988          133 LVTS---NDSRIRLYDLRDLNL----SCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHHDYAKFSSVRR  202 (408)
Q Consensus       133 ~~~~---~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~  202 (408)
                      +++.   .+..|.+|++.....    +..+.+ ........+.+.++|.+.++...   |.....++..           
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~-----------  197 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH-----------  197 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH-----------
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh-----------
Confidence            5552   256788888765322    222332 23344677888888876665431   1000000000           


Q ss_pred             CCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCC
Q psy988          203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRD  281 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  281 (408)
                              .......+.  .+.|..               .......-...+.++|+||++.++++ +..+.|..|++..
T Consensus       198 --------~~~~~g~vy--r~d~~~---------------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          198 --------LGLAWSFVT--YYSPND---------------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --------TTCCCEEEE--EECTTC---------------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --------ccCCccEEE--EEECCe---------------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                    000001111  111210               00111122345778888888877766 5678999999863


Q ss_pred             -Cee--eeEEeeccceeceeEEEEcC-CCCEEEEecCC-ceEEEee
Q psy988          282 -LNL--SCKYKGYVNVSSQIKASFSH-DGKYIVSGSEN-QCIYIWK  322 (408)
Q Consensus       282 -~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d-g~i~iw~  322 (408)
                       ++.  ...+..   ....-.+++.+ +|++.+++..+ +.|..|+
T Consensus       253 ~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          253 NWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             TSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             CCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence             332  122311   22455789999 59988766544 3444444

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.73  E-value=0.016  Score=48.97  Aligned_cols=221  Identities=5%  Similarity=0.066  Sum_probs=131.5

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEe
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIE  124 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  124 (408)
                      ..|.|-|+..+.....+...+     -+.-.+|..+.+|.-. ..++.|+|+++..........         ..|.--.
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~VvfWk  112 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWK  112 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEE
T ss_pred             CeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCceEEE
Confidence            468888888766543233332     2334678887776654 789999999998765554432         2565566


Q ss_pred             eCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccc--cccceEEEEecCCCEEEEee-------cCceEEEeeeccce
Q psy988          125 PMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVN--VSSQIKASFSHDGKYIVSGS-------ENQCIYIWKTHHDY  194 (408)
Q Consensus       125 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~  194 (408)
                      |-. .+.|+..+. ..|+-|++... .+.+.+..|..  ...+.....+++.++++..+       -.|.+.+|..+.. 
T Consensus       113 Wis-~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-  189 (494)
T 1bpo_A          113 WIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  189 (494)
T ss_dssp             EEE-TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-
T ss_pred             ecC-CCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-
Confidence            654 345555443 58999999743 45555554433  34466667788999876543       2467888887543 


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec---CC
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS---ND  271 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d  271 (408)
                                  ..+.+.+|......+.+..+..                       +.         ..++.+.   ..
T Consensus       190 ------------~sQ~ieGhaa~F~~~~~~g~~~-----------------------~~---------~lf~fa~r~~~g  225 (494)
T 1bpo_A          190 ------------VSQPIEGHAASFAQFKMEGNAE-----------------------ES---------TLFCFAVRGQAG  225 (494)
T ss_dssp             ------------CEEEECCSEEEEEEEECTTCSS-----------------------EE---------EEEEEEECSTTC
T ss_pred             ------------ccchheeeeeeeEEEecCCCCC-----------------------Cc---------eEEEEEEecCCC
Confidence                        2234566655554443332110                       00         0112221   23


Q ss_pred             CeEEEEEcCCC---eee---eE----EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          272 SRIRLYDLRDL---NLS---CK----YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       272 ~~i~i~d~~~~---~~~---~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      ++++|.++...   ...   +.    ++.........++..|+.-..+..-+.-|.|++||+.++.
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence            67888887432   110   01    1111112345578888888888888999999999999984

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.69  E-value=0.029  Score=51.03  Aligned_cols=349  Identities=7%  Similarity=-0.056  Sum_probs=171.2

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA   82 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   82 (408)
                      .|...+++..........-.....|++++ +++.|..+ ...+.|...++.......   +.........+++.. +..+
T Consensus       147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~~v---~~~~l~~P~glav~~-~~ly  221 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNREV---IADDLPHPFGLTQYQ-DYIY  221 (628)
T ss_dssp             EEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEE---EEECCSCEEEEEEET-TEEE
T ss_pred             EEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCceEE---eeccCCCceEEEEEC-CEEE
Confidence            34444554443333333445678999999 55555544 456789999987755432   222223345677754 4444


Q ss_pred             EEEecCCEEEEEeccCCeeeEEEEE----------eecc---ccccC---CCCe--EEE----------e-----eCCCC
Q psy988           83 VVGSYDGRCIFYTTDQLKYHTQIHV----------RSTR---GKNAT---GRKI--SGI----------E-----PMPGE  129 (408)
Q Consensus        83 ~~~~~dg~i~iw~~~~~~~~~~~~~----------~~~~---~~~~~---~~~v--~~~----------~-----~~~~~  129 (408)
                      ++-...+.|...|..+++....+..          ....   .....   .+..  .|+          +     ..+++
T Consensus       222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~  301 (628)
T 4a0p_A          222 WTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN  301 (628)
T ss_dssp             EEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTS
T ss_pred             EecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccC
Confidence            4444578888888665543322211          0000   00000   0001  111          0     01111


Q ss_pred             -------CeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecc
Q psy988          130 -------DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVR  201 (408)
Q Consensus       130 -------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  201 (408)
                             .+|+.+. ...|+-..+.................+..++|.+.++.|+.+. ..+.|+.+++.......    
T Consensus       302 ~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~----  376 (628)
T 4a0p_A          302 RTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT----  376 (628)
T ss_dssp             SCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----
T ss_pred             CcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE----
Confidence                   1222222 2344444433221110111111223466788988766666554 35677777664321100    


Q ss_pred             cCCCccccc-cc--cccceEEEEEEeCCcceeeeecCCCC-------CCCc-eeeecCCCceeeeeccCCCCCeEEEe-c
Q psy988          202 RDRNDFWEG-IK--AHNAVVTCAVFAPCPELIIAQMEPDK-------SEST-GYVLNATGRKISGIEPMPGEDKILVT-S  269 (408)
Q Consensus       202 ~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~-~  269 (408)
                           .+.. ..  ........+++...++.|...-....       .... ..+....-..+.+|++.|...+|+.. .
T Consensus       377 -----v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~  451 (628)
T 4a0p_A          377 -----VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNL  451 (628)
T ss_dssp             -----EEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEE
T ss_pred             -----EEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeec
Confidence                 0000 00  01235678888887666554321111       1111 12223344668899999955455443 2


Q ss_pred             CCC--eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCccccceeee-
Q psy988          270 NDS--RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK-  345 (408)
Q Consensus       270 ~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-  345 (408)
                      ...  .|...++...........  .......++++++++.|+.+. ..+.|...+++...             ...+. 
T Consensus       452 g~~~~~I~r~~~dG~~~~~l~~~--~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-------------r~~~~~  516 (628)
T 4a0p_A          452 QERSPKIERAALDGTEREVLFFS--GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-------------RIVLED  516 (628)
T ss_dssp             ETTEEEEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------CEEEEC
T ss_pred             CCCCCeEEEEeCCCCCcEEEEec--cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-------------eEEEEc
Confidence            222  677777764333222222  223567899999877777654 45789999986531             11111 


Q ss_pred             eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCc
Q psy988          346 AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKH  399 (408)
Q Consensus       346 ~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  399 (408)
                      .......+++...                 +.++.+-...+.|...+..+++..
T Consensus       517 ~~~~~P~glav~~-----------------~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          517 SNILQPVGLTVFE-----------------NWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             SSCSCEEEEEEET-----------------TEEEEEETTTTEEEEEETTSSSCC
T ss_pred             CCCCCcEEEEEEC-----------------CEEEEEECCCCeEEEEECcCCCCc
Confidence            1222345666653                 445555555667777776665543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.66  E-value=0.0063  Score=51.23  Aligned_cols=165  Identities=15%  Similarity=0.189  Sum_probs=92.5

Q ss_pred             CCCCCeEEEeeCCCeEEEEEccCcccceeecCcc--ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccC
Q psy988          126 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV--NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRD  203 (408)
Q Consensus       126 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  203 (408)
                      ..++..++++-. +.||.-++.....-+.+....  ....+..+..+|+|++|+..+. ..|.|..+..+.......   
T Consensus        29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~---  103 (452)
T 3pbp_A           29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV---  103 (452)
T ss_dssp             ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH---
T ss_pred             EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc---
Confidence            345666666543 788888887544333333331  2224667999999999998865 478888775321110000   


Q ss_pred             CCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC---CCCeEEEecCCCeEEEEEcC
Q psy988          204 RNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLR  280 (408)
Q Consensus       204 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~  280 (408)
                            .. ...-.+......+.                   ......+|..+.|+|   .+..|++-..|+.|++||+.
T Consensus       104 ------~~-~~~~q~~ty~l~~~-------------------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~  157 (452)
T 3pbp_A          104 ------SI-QDAFQIFHYSIDEE-------------------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL  157 (452)
T ss_dssp             ------HH-HHTTEEEEEEGGGC-------------------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred             ------cc-ccccceeEEEcCCc-------------------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence                  00 00001111111110                   001234566666666   35678888999999999998


Q ss_pred             CCee-eeEEee-------ccceeceeEEEEcCCCCEEEE--ecCCceEEEe
Q psy988          281 DLNL-SCKYKG-------YVNVSSQIKASFSHDGKYIVS--GSENQCIYIW  321 (408)
Q Consensus       281 ~~~~-~~~~~~-------~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw  321 (408)
                      .... ...+..       ......+.+++|++++-.|..  .+..|.|+-.
T Consensus       158 ~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          158 NSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            5221 112221       111246789999998887777  4488888753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.65  E-value=0.02  Score=48.05  Aligned_cols=109  Identities=8%  Similarity=0.021  Sum_probs=58.3

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc-ccccCCCCeEEEeeCCC---CCeEEEeeC-------
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR-GKNATGRKISGIEPMPG---EDKILVTSN-------  137 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~-------  137 (408)
                      ....|+|.|+|++|+++...|.|++++.+. .....  ..... ...........++++|+   +..|+++..       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAP--LSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCC--CBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeE--ecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            467899999998445556789999998543 21100  01110 00112245789999996   566665532       


Q ss_pred             -CCeEEEEEccCcc----cce-eecCc----cccccceEEEEecCCCEEEEee
Q psy988          138 -DSRIRLYDLRDLN----LSC-KYKGY----VNVSSQIKASFSHDGKYIVSGS  180 (408)
Q Consensus       138 -dg~i~i~d~~~~~----~~~-~~~~~----~~~~~~~~~~~~~~~~~l~~~~  180 (408)
                       ...|..+++....    ... .+...    ........+.|.|||.+.++.+
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence             2356666664321    111 11111    1111234689999996555543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.63  E-value=0.018  Score=47.05  Aligned_cols=176  Identities=10%  Similarity=0.111  Sum_probs=89.5

Q ss_pred             eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSLD-----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      .+..||+.+.+-...-.  ....-.+++..  ++.+++.|+.+     ..+.+||..+.+......+.........+.  
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--  106 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--  106 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence            46677777665433211  11111122222  56777887754     358899988876554333332222222222  


Q ss_pred             cCCCEEEEEecCC-----EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-------CCeEEEE
Q psy988           77 ENGKFAVVGSYDG-----RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-------DSRIRLY  144 (408)
Q Consensus        77 ~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~  144 (408)
                      -++..++.|+.++     .+.+||..+.+.....   .....   ......+.+  ++..++.|+.       ...+.+|
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~y  178 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---PMNTR---RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECY  178 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---CCSSC---CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---CCCCc---ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEE
Confidence            2677777777653     5778888876643321   11111   111122222  4556666643       2458899


Q ss_pred             EccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccc
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHD  193 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~  193 (408)
                      |+.+.+-...-........ .++ ...+++.++.|+.++     .+.+||+.+.
T Consensus       179 d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          179 NATTNEWTYIAEMSTRRSG-AGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             eCCCCcEEECCCCcccccc-ccE-EEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            9887654332111111111 122 223677777777643     5777877653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.60  E-value=0.021  Score=46.85  Aligned_cols=148  Identities=8%  Similarity=0.012  Sum_probs=75.7

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----C-----CEEEEEeccCCe
Q psy988           34 DDRYFLSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----D-----GRCIFYTTDQLK  100 (408)
Q Consensus        34 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iw~~~~~~  100 (408)
                      ++.+++.|+.+    ..+.+||..+.+......+.........+.  .++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            56777777742    468899988876553322222111112222  26677777765    2     457888888765


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      .....   .....   ......+.+  ++..++.|+.+     ..+.+||+.+.+-...-......... +++ .-+++.
T Consensus       102 W~~~~---~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i  171 (308)
T 1zgk_A          102 WSPCA---PMSVP---RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVA-VLNRLL  171 (308)
T ss_dssp             EEECC---CCSSC---CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEE
T ss_pred             EeECC---CCCcC---ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEE-EECCEE
Confidence            43221   11111   111222222  46666666532     46888998876533221111111111 122 226677


Q ss_pred             EEEeecC-----ceEEEeeeccc
Q psy988          176 IVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       176 l~~~~~d-----g~i~i~d~~~~  193 (408)
                      ++.|+.+     ..+.+||+.+.
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEEeCCCCCCcCceEEEEeCCCC
Confidence            7777654     34777776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.55  E-value=0.0062  Score=51.24  Aligned_cols=140  Identities=11%  Similarity=0.047  Sum_probs=91.1

Q ss_pred             CceEEEEeccCCeeEeEEEeC-----CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCcee----------eeeecC-
Q psy988            2 DKTVRLWHISRKECLCCFQHI-----DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV----------WNEVEG-   65 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~-----~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~----------~~~~~~-   65 (408)
                      ++.||.-++.....-+.+...     +.|..+..+| +|++||..+. ..|.|-.+..+....          .+.+.- 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcC
Confidence            456666677654444555533     2688899999 9999998865 689999887432110          011111 


Q ss_pred             -----CceeeEEEEEecC---CCEEEEEecCCEEEEEeccCCeeeEEEEEeec---cccccCCCCeEEEeeCCCCCeEEE
Q psy988           66 -----QTKLITAANFCEN---GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRST---RGKNATGRKISGIEPMPGEDKILV  134 (408)
Q Consensus        66 -----~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~  134 (408)
                           ...+|..+.|+|-   +..|++-..|+.|++||+........ .+...   .+.......+.+++|.+++-.|++
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                 2467999999995   56899999999999999986322211 11111   111222357889999987777777


Q ss_pred             ee--CCCeEEEE
Q psy988          135 TS--NDSRIRLY  144 (408)
Q Consensus       135 ~~--~dg~i~i~  144 (408)
                      .+  +.|.|+-.
T Consensus       197 l~~t~~GDIYAl  208 (452)
T 3pbp_A          197 LNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EecCCCCCEEEE
Confidence            54  67777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.46  E-value=0.047  Score=47.49  Aligned_cols=113  Identities=11%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEeeC-------
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVTSN-------  137 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-------  137 (408)
                      .....|+|.|+|+++++-...+.|++++..++.......+............+..++|+|+   +..|+++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3467999999998666644335788887654443221111111100112356789999996   666666542       


Q ss_pred             ------CCeEEEEEccCcc-------cce-eecCccccccceEEEEecCCCEEEEeec
Q psy988          138 ------DSRIRLYDLRDLN-------LSC-KYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       138 ------dg~i~i~d~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                            ...|.-++.....       .+. .+.. ........++|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence                  1345556554321       111 1111 11123557899999987666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.43  E-value=0.038  Score=45.77  Aligned_cols=188  Identities=9%  Similarity=-0.067  Sum_probs=92.4

Q ss_pred             CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC--ccccccceEEEEecCCCEEEEeecCceEEEeeecccee
Q psy988          118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  195 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  195 (408)
                      ..+.++.|.+.+..++ ++..|.|. .....++.-.....  ......+..+.+.+ +. +++++..+.|+.  ...+..
T Consensus        36 ~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~--S~DgG~  109 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH--TTDGGQ  109 (327)
T ss_dssp             SCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE--ESSTTS
T ss_pred             CcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE--ECCCCC
Confidence            3688898887666666 45567553 33333332111111  11123466778875 44 444456664443  222111


Q ss_pred             eeeecccCCCccccccccccceEEEEEEeCCcceeeeecCC------CCCCCceeeecCCCceeeeeccCCCCCeEEEec
Q psy988          196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP------DKSESTGYVLNATGRKISGIEPMPGEDKILVTS  269 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (408)
                      .......        .......+..+.+.+++..++.....      +....-..........+..+.+.+++.+++++.
T Consensus       110 tW~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~  181 (327)
T 2xbg_A          110 SWSQIPL--------DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS  181 (327)
T ss_dssp             SCEECCC--------CTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred             CceECcc--------ccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence            1111100        00112235566666666555443211      111111222233445688899999998887775


Q ss_pred             CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEee
Q psy988          270 NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       270 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  322 (408)
                      ..+..+-.|- .++.-..+.. .....+..+.++++++.++++ .+|.+++.+
T Consensus       182 ~G~~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~  231 (327)
T 2xbg_A          182 RGSFYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSD  231 (327)
T ss_dssp             TSSEEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSCEEEEE-TTTEEEEEE
T ss_pred             CCcEEEEeCC-CCCceeECCC-CCCCccceeEECCCCCEEEEe-CCceEEEec
Confidence            5444444442 1222222221 122356788899998876554 577777764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.32  E-value=0.048  Score=44.67  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=89.8

Q ss_pred             eEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEEEEEeC----C-----CcEEEEecCCCCceeeeeecCCceeeEE
Q psy988            4 TVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYFLSGSL----D-----GKLRLWNIPDKKVAVWNEVEGQTKLITA   72 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~t~~~----d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~   72 (408)
                      .+.+||+.+.+-...-.  ....-.+++..  ++.+++.|+.    +     ..+.+||..+.+......+.........
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            56778887766443321  11111122222  5677777775    2     4688999888765433333222222222


Q ss_pred             EEEecCCCEEEEEecC-----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-----CeEE
Q psy988           73 ANFCENGKFAVVGSYD-----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-----SRIR  142 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~  142 (408)
                      +.+  +++.++.|+.+     ..+.+||..+.+......   ....   ...-..+.+  ++..++.|+.+     ..+.
T Consensus       118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  187 (308)
T 1zgk_A          118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTR---RIGVGVAVL--NRLLYAVGGFDGTNRLNSAE  187 (308)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSC---CBSCEEEEE--TTEEEEECCBCSSCBCCCEE
T ss_pred             EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCcc---ccceEEEEE--CCEEEEEeCCCCCCcCceEE
Confidence            222  66777776643     468888888765432211   1111   111122222  46666666543     4688


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  193 (408)
                      +||+.+.+-...-....... -.+++ .-+++.++.|+.+     ..+.+||+.+.
T Consensus       188 ~yd~~~~~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          188 CYYPERNEWRMITAMNTIRS-GAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCB-SCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEeCCCCeEeeCCCCCCccc-cceEE-EECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            99988765332211111111 11222 2267777777654     45788887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.30  E-value=0.052  Score=44.63  Aligned_cols=144  Identities=10%  Similarity=0.055  Sum_probs=72.8

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----C-------CEEEEEeccCCeeeEEE
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----D-------GRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iw~~~~~~~~~~~  105 (408)
                      +++.|+  ..+.+||..+++... ..+..............++..++.|+.    +       ..+.+||..+.+.... 
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-
Confidence            445555  579999998887643 233222122222233457777777774    1       1377888887664321 


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--------CeEEEEEccCcccceeecCccccccceEEEEecCCCEEE
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSND--------SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  177 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (408)
                        .......   .....+.+  ++..++.|+.+        ..+.+||+.+.+-...-....... - ..+...+++.++
T Consensus        83 --~~~p~~r---~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~-~~~~~~~~~iyv  153 (315)
T 4asc_A           83 --PPLPSPR---CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY-G-HTVLSHMDLVYV  153 (315)
T ss_dssp             --CCBSSCE---ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB-S-CEEEEETTEEEE
T ss_pred             --CCCCcch---hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc-c-eeEEEECCEEEE
Confidence              1111111   01112222  45566666532        458899998765322211111111 1 122234666777


Q ss_pred             Eeec-C-----ceEEEeeeccc
Q psy988          178 SGSE-N-----QCIYIWKTHHD  193 (408)
Q Consensus       178 ~~~~-d-----g~i~i~d~~~~  193 (408)
                      .|+. +     ..+.+||+.+.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTT
T ss_pred             EeCCCCCCcccceEEEEeCCCC
Confidence            7765 2     35777777653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.29  E-value=0.032  Score=54.66  Aligned_cols=272  Identities=11%  Similarity=0.073  Sum_probs=141.6

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV   83 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   83 (408)
                      +|.|-|+.++..+.  ...-.--+.-.+| ..+.+|.=. ..++.|+|+++........+   ...|.-=.|-.+.. |+
T Consensus        49 ~vvIidl~~~~~~~--rrpi~AdsAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~-l~  120 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPI--RRPISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNT-VA  120 (1630)
T ss_pred             eEEEEECCCCCCcc--cccccchhhccCC-CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecCCCe-eE
Confidence            35555555443321  1122223455788 777777654 68899999988765532222   23455555644433 33


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-------CCCeEEEEEccCcccceeec
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-------NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ..+ +..|..|++.+.........+. .  .-....|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.
T Consensus       121 lVT-~~aVyHW~~~~~s~P~k~fdR~-~--~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie  195 (1630)
T 1xi4_A          121 LVT-DNAVYHWSMEGESQPVKMFDRH-S--SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE  195 (1630)
T ss_pred             EEc-CCeEEEeccCCCCccHHHHhcc-h--hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh
Confidence            332 5689999997532211110000 0  01134677778888888877543       35788999887543 33344


Q ss_pred             CccccccceEEEEecCCCEEEE-eec---CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          157 GYVNVSSQIKASFSHDGKYIVS-GSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      +|...-.-..+.-.+....+++ +..   .+.+++.++.....         +     -.........+.|.|+      
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~---------~-----~~~f~kk~~~~~~~~~------  255 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT---------G-----NQPFPKKAVDVFFPPE------  255 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCcc---------C-----CCCCccccccccCCcc------
Confidence            4432110000000111112222 211   25788877743200         0     0011112333444443      


Q ss_pred             ecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe
Q psy988          233 QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  312 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  312 (408)
                                     .....+.++..++....+..-+.-|.|.+||+.++.++..-+-...  +|...+......-++..
T Consensus       256 ---------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~v  318 (1630)
T 1xi4_A          256 ---------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGV  318 (1630)
T ss_pred             ---------------cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEE
Confidence                           2233456677788888888889999999999999988765443323  33322333333334444


Q ss_pred             cCCceEEEeeccc
Q psy988          313 SENQCIYIWKTHH  325 (408)
Q Consensus       313 ~~dg~i~iw~~~~  325 (408)
                      ...|.|.--.++.
T Consensus       319 nr~G~vl~v~v~~  331 (1630)
T 1xi4_A          319 NRKGQVLSVCVEE  331 (1630)
T ss_pred             cCCceEEEEEEcc
Confidence            4666666555554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.24  E-value=0.0036  Score=47.43  Aligned_cols=150  Identities=13%  Similarity=-0.023  Sum_probs=80.9

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee--------eEEEEEecCCCEEEEEecCCEEEEE
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL--------ITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      ..+..++|+| ++.+.+.  .+|.+.-.+..+....   ...+-...        ..++.|.|+|.+.++  .||.|.-+
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND---NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC---CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc---cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence            5788999999 9986666  6687666665443222   11111222        478899999987777  66988877


Q ss_pred             eccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc-----eeecCccccccceEEEE
Q psy988           95 TTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASF  169 (408)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~  169 (408)
                      +-.+.....-+.... ......-..+..+.+.|+|...++.  |+.++-....+....     ....+.........+.|
T Consensus       113 ~pP~~~~~~Wl~~a~-~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          113 SPPQSDTDNWIARAT-EVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             SCCCSTTCCHHHHSE-EEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             CCCcCCCCceecccc-EeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence            753321110000000 0000111367899999999776666  777543333221110     11111111112334568


Q ss_pred             ecCCCEEEEeecCceE
Q psy988          170 SHDGKYIVSGSENQCI  185 (408)
Q Consensus       170 ~~~~~~l~~~~~dg~i  185 (408)
                      .+++...++.  +|.+
T Consensus       190 ~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          190 SSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             CTTSCEEEEE--TTEE
T ss_pred             CCCCcEEEEe--CCeE
Confidence            8888766655  6633

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.056  Score=44.56  Aligned_cols=118  Identities=8%  Similarity=0.100  Sum_probs=70.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCceeeeeecCC-ceeeEEEEE--ec-CCCEEEEE-ecCCEEEEEeccCCeeeEEEEEee
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ-TKLITAANF--CE-NGKFAVVG-SYDGRCIFYTTDQLKYHTQIHVRS  109 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~  109 (408)
                      +.+++.++.||.|.-.|.++|+..  -.+... ..++....-  .+ ++..++.. +.||.+..++..++..........
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~--W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHII--WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEE--EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEE--EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            347888999999999999888765  233322 122222110  01 23333333 589999999988875543333222


Q ss_pred             ccccccCCCCeEE---Eee-----CCCCCeEEEeeCCCeEEEEEccCcccceeecCc
Q psy988          110 TRGKNATGRKISG---IEP-----MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus       110 ~~~~~~~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      ...    ..++..   ...     ...+..+++++.+|.+...|+++|+.+..+...
T Consensus        88 lv~----~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           88 LVS----TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHT----TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cee----ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            111    112221   000     013568899999999999999999998887643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.16  E-value=0.068  Score=46.48  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC------CceeeEEEEEecC---CCEEEEEec-----
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG------QTKLITAANFCEN---GKFAVVGSY-----   87 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~-----   87 (408)
                      -...+.|+|.| +|+++++-...+.|++++..++.......+..      .......|+|+|+   +..|+.+..     
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            45678999999 89866665433478888866555433222221      2456789999995   444544432     


Q ss_pred             --------CCEEEEEeccCC--eeeE-EEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988           88 --------DGRCIFYTTDQL--KYHT-QIHVRSTRGKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        88 --------dg~i~iw~~~~~--~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                              ...|.-++....  .... ...+........|  ....++|.|+|.+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEEC
Confidence                    235666665432  1111 1111111111122  578899999998666644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.12  E-value=0.1  Score=51.38  Aligned_cols=244  Identities=8%  Similarity=0.036  Sum_probs=124.8

Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEE
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  168 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  168 (408)
                      ..|.|.|+..+......+.           .--+...+|..+.++.-. ...+.|+|+++...+..+.-..   .|.--.
T Consensus        48 ~~vvIidl~~~~~~~rrpi-----------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWk  112 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI-----------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWK  112 (1630)
T ss_pred             ceEEEEECCCCCCcccccc-----------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEE
Confidence            4788888887654322211           122344577776665554 6799999999877666554433   355566


Q ss_pred             EecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccc----cceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          169 FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH----NAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                      |-.+.. |+..+ +..|+-|++....           .+.+.+..|    ...|.....+++.++++..+          
T Consensus       113 Wis~~~-l~lVT-~~aVyHW~~~~~s-----------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g----------  169 (1630)
T 1xi4_A          113 WISLNT-VALVT-DNAVYHWSMEGES-----------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG----------  169 (1630)
T ss_pred             ecCCCe-eEEEc-CCeEEEeccCCCC-----------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe----------
Confidence            654443 33332 3579999996421           122222222    34455555555555553211          


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC-CCEEEEec---CCceEEE
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-GKYIVSGS---ENQCIYI  320 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~---~dg~i~i  320 (408)
                                   ++++.     +.-.|.+.+|..+. +..+.+.+|.....-..+.=.+. ...++.+.   ..+.++|
T Consensus       170 -------------i~~~~-----~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi  230 (1630)
T 1xi4_A          170 -------------ISAQQ-----NRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (1630)
T ss_pred             -------------eccCC-----Ccccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence                         01111     13458899998774 34445566544221111111111 12222222   1368999


Q ss_pred             eeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcc
Q psy988          321 WKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHS  400 (408)
Q Consensus       321 w~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  400 (408)
                      -++...........+........-..-.+--.++..++                .-..+..-+.-|.|.++|+.++....
T Consensus       231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~----------------k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE----------------KHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EecCCCccCCCCCccccccccCCcccccCcceEEEecc----------------ccCEEEEEecCceEEEEecccchhhh
Confidence            99865311100000000000000001122223556666                45567777788999999999998876


Q ss_pred             ccccc
Q psy988          401 SLPVS  405 (408)
Q Consensus       401 ~~~~s  405 (408)
                      .-++|
T Consensus       295 ~~ris  299 (1630)
T 1xi4_A          295 MNRIS  299 (1630)
T ss_pred             hcccc
Confidence            65554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.10  E-value=0.098  Score=43.81  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=62.2

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec---CCceeeEEEEEecC---CCEEEEEec----C---
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE---GQTKLITAANFCEN---GKFAVVGSY----D---   88 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d---   88 (408)
                      -.....|+|.| ++++++ +..+|.|++++. +++ .....+.   ........++++|+   +..|+.+..    +   
T Consensus        28 l~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCCeEEEEcC-CCeEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            35678999999 887544 556799999973 443 2222221   12345789999997   445554433    3   


Q ss_pred             -CEEEEEeccCC--eeeEE-EEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988           89 -GRCIFYTTDQL--KYHTQ-IHVRSTRGKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        89 -g~i~iw~~~~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                       +.|..|+....  ..... ...........|  ....++|.|++..+++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEEC
Confidence             57777877654  11111 111111111112  346789999997666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.96  E-value=0.11  Score=42.24  Aligned_cols=95  Identities=12%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             ecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--------------C
Q psy988           76 CENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--------------S  139 (408)
Q Consensus        76 ~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g  139 (408)
                      +++|..++...  .++.|...+.+..... .+..            -.+--++++++.|+.+...              .
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN------------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE------------EEEEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC------------CceeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence            35666666554  2456666665544322 2211            1123446778888777542              4


Q ss_pred             eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee--cCceEEEeee
Q psy988          140 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS--ENQCIYIWKT  190 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~  190 (408)
                      .|+..++...+... +...      ....+++++++|+-..  .++.-.||.+
T Consensus        89 ~Iy~i~~dg~~~~~-l~~~------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           89 SLCRIKRNGHGSTV-LDPD------PCIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EEEEEETTSCCCEE-EECS------CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             eEEEEeCCCCcceE-eecC------CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            67777777665332 2211      1236788888888765  3444444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.93  E-value=0.11  Score=43.64  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=30.7

Q ss_pred             CCCEEEEEeC-C---------CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecC
Q psy988           34 DDRYFLSGSL-D---------GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYD   88 (408)
Q Consensus        34 ~~~~l~t~~~-d---------g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   88 (408)
                      ++.+++.|+. +         ..+.+||..+.+......+......-.++. ..+++.++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTF-VHNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEE-EETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEE-EECCEEEEEeCcC
Confidence            5677777776 2         468899998876553333221111111122 2577777888754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.89  E-value=0.14  Score=42.10  Aligned_cols=176  Identities=13%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             eEEEEeccCCeeEeEEE--e-CCceEEEEEcCCCCCEEEEEeC----C-------CcEEEEecCCCCceeeeeecCCcee
Q psy988            4 TVRLWHISRKECLCCFQ--H-IDFVTAICFHPRDDRYFLSGSL----D-------GKLRLWNIPDKKVAVWNEVEGQTKL   69 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~--h-~~~v~~~~~sp~~~~~l~t~~~----d-------g~i~iw~~~~~~~~~~~~~~~~~~~   69 (408)
                      .+.+||+.+++-.. ..  . ........... ++.+++.|+.    +       ..+.+||..+.+......+......
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             ceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            57788988887543 22  1 12223333344 7788888874    1       1277888887765433333222222


Q ss_pred             eEEEEEecCCCEEEEEecC--------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC----
Q psy988           70 ITAANFCENGKFAVVGSYD--------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN----  137 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----  137 (408)
                      ...+.+  ++..++.|+.+        ..+.+||..+.+.....   ......   .....+.  .+++.++.|+.    
T Consensus        92 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r---~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           92 FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVV---YGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCC---BSCEEEE--ETTEEEEECCBCTTS
T ss_pred             eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcc---cceeEEE--ECCEEEEEeCCCCCC
Confidence            222222  66667777642        46888998877543221   111111   1112222  24566667765    


Q ss_pred             --CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCc-----eEEEeeeccc
Q psy988          138 --DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIWKTHHD  193 (408)
Q Consensus       138 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~  193 (408)
                        -..+.+||+.+.+-...-........  ..+..-+++.++.|+.++     .+.+||+.+.
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSL--FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhc--eEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence              24689999987653322111111111  112233677777777644     4777777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.87  E-value=0.21  Score=43.86  Aligned_cols=289  Identities=10%  Similarity=0.057  Sum_probs=140.4

Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccC-----------------CCCe--EEEeeC---CCCCeEEEeeC-C
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT-----------------GRKI--SGIEPM---PGEDKILVTSN-D  138 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v--~~~~~~---~~~~~l~~~~~-d  138 (408)
                      +.||+..|.++|+-+.+++....+.........+-                 .+..  ..+.+.   .||++|+.-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            77889999999999999988777665443321110                 0011  112222   25677777753 5


Q ss_pred             CeEEEEEccCcccceeecCccccccceEEEEe--cCCCEEEEeecCc-------eEEEeeeccceeeeeecccCCCcc-c
Q psy988          139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS--HDGKYIVSGSENQ-------CIYIWKTHHDYAKFSSVRRDRNDF-W  208 (408)
Q Consensus       139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~-~  208 (408)
                      ..|...+++..++.+.+... +...+..+.+-  |+..|++++++..       ...-+|-......+..+.....+. +
T Consensus       153 ~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             cceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            67888888877765554432 22335556665  6788888887532       110000000000011000000000 0


Q ss_pred             cccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecC-CCceeeeecc------CCCCCeEEEecCCC-eEEEEEcC
Q psy988          209 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNA-TGRKISGIEP------MPGEDKILVTSNDS-RIRLYDLR  280 (408)
Q Consensus       209 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~------~~~~~~l~~~~~d~-~i~i~d~~  280 (408)
                      +...  ..........+++.+.++...+............ ....+..+.|      -.+|++-..   +| .+.+.|.+
T Consensus       232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~---~g~gv~ViD~~  306 (638)
T 3sbq_A          232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL---GDSKTPVLDGR  306 (638)
T ss_dssp             EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC---TTCCCCEEECS
T ss_pred             EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE---CCCCeeEEccc
Confidence            0000  0111122334455554444333222211111111 1111111111      112332211   21 36777776


Q ss_pred             C----Ce-eeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccc-cccCccccceeeeeeccceEE
Q psy988          281 D----LN-LSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSS-VRRDRNDFWEGIKAHNAVVTC  353 (408)
Q Consensus       281 ~----~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~  353 (408)
                      .    +. ....++...   ....+..+|||+++++++ .+.++.++|+..-...+.. +..+......... -.-.-..
T Consensus       307 ~~~~~~~~~~~~iP~pk---sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlH  382 (638)
T 3sbq_A          307 KKDGKDSKFTRYVPVPK---NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLH  382 (638)
T ss_dssp             CBTTBCCSSEEEEEESS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEE
T ss_pred             cccccCCceEEEEeCCC---CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccE
Confidence            5    22 222232222   334679999999988755 5789999998853221110 0011111122222 2334568


Q ss_pred             EEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          354 AVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      .+|.+                +|+...|---|..|.-|++...
T Consensus       383 t~Fd~----------------~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          383 TTFDG----------------RGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEECS----------------SSEEEEEETTTTEEEEEEHHHH
T ss_pred             EEECC----------------CCceEeeeeecceEEEEeccHH
Confidence            89999                8876677778999999998753

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.86  E-value=0.15  Score=42.22  Aligned_cols=116  Identities=11%  Similarity=0.017  Sum_probs=64.5

Q ss_pred             ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEEe---e
Q psy988           63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILVT---S  136 (408)
Q Consensus        63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~---~  136 (408)
                      +...-.....|+|.|+|.++++--..|.|++++..+++........  ............++++|+   +..|++.   .
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            3333445689999999987666544899999986654432111111  111122356899999995   4555553   2


Q ss_pred             CCCeEEEEEccCcc--------cce---eecCccccccceEEEEecCCCEEEEeec
Q psy988          137 NDSRIRLYDLRDLN--------LSC---KYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       137 ~dg~i~i~d~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      .++.|.-|.+..+.        ...   .+.. ........+.|.|||.+.++.+.
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBC
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECC
Confidence            34556666665421        111   1111 11112335889999976666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.67  E-value=0.22  Score=41.30  Aligned_cols=113  Identities=11%  Similarity=0.026  Sum_probs=66.0

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee----cCCceeeEEEEEecC---CCEEEEE-e--cCCE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV----EGQTKLITAANFCEN---GKFAVVG-S--YDGR   90 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~   90 (408)
                      .-...+.|+|.| ++.++++--..|.|++++..++.......+    .........|+|+|+   +..|+.. +  .++.
T Consensus        30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            456778999999 898776665489999998766654322222    123456789999985   3344432 2  3456


Q ss_pred             EEEEeccCCe-----e-eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988           91 CIFYTTDQLK-----Y-HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        91 i~iw~~~~~~-----~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                      |.-|......     . .....+........|  .-..+.|.|++.+.++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEEC
Confidence            6666665421     1 011111111111222  346789999997666644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0046  Score=50.95  Aligned_cols=158  Identities=10%  Similarity=0.092  Sum_probs=81.9

Q ss_pred             CCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEE--e-cCCCEEEEe-ecCceEEEeeeccceeeeeecccCC
Q psy988          129 EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--S-HDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDR  204 (408)
Q Consensus       129 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~  204 (408)
                      +..+++++.||.|.-+|..+|+..-.+... ....+....-  . .++..++.. ..||.|+.++..++..+......  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~--   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR--   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH--
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc--
Confidence            457889999999999999999988877654 1111211110  0 123333333 57999999998765333211000  


Q ss_pred             CccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee
Q psy988          205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL  284 (408)
Q Consensus       205 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  284 (408)
                           .+. ...++.. .    +.-++                      ...--...+..+++|+.+|++...|+.+|+.
T Consensus        87 -----~lv-~~SP~~~-~----~~pvv----------------------~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           87 -----QLV-STSPLHL-K----TNIVV----------------------NDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             -----HHH-TTCSEEE-E----CC--------------------------------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             -----cce-ecccccc-C----CCcee----------------------ecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence                 000 0001100 0    00000                      0000001245678899999999999999999


Q ss_pred             eeEEeeccceec-----eeEEEEc-----CCCCEEEEecCCceEEEee
Q psy988          285 SCKYKGYVNVSS-----QIKASFS-----HDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       285 ~~~~~~~~~~~~-----v~~~~~s-----~~~~~l~~~~~dg~i~iw~  322 (408)
                      +..+........     ..+....     ..+..|+.+..+..+.+.+
T Consensus       134 ~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          134 ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             EEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred             EEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            988874321110     0011110     1235677777676666666

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.57  E-value=0.47  Score=43.94  Aligned_cols=154  Identities=14%  Similarity=0.161  Sum_probs=83.1

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCCCceeee-e-----ecCCceeeEEEEEecCCCEEEEEecC------CEEEEEecc
Q psy988           34 DDRYFLSGSLD----GKLRLWNIPDKKVAVWN-E-----VEGQTKLITAANFCENGKFAVVGSYD------GRCIFYTTD   97 (408)
Q Consensus        34 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~   97 (408)
                      ++.+++.||.+    ..+.+||..++...... .     .......-..+.+..+++.++.|+.+      ..+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            67788888753    46889998887765433 1     11111112222222277777777754      357888888


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC--eEEEEEccCcccceeec---CccccccceEEEEecC
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS--RIRLYDLRDLNLSCKYK---GYVNVSSQIKASFSHD  172 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~  172 (408)
                      +.......   .....    ..-.+++...++..++.|+.++  .+.+||+.+.+-...-.   ..........+.+..+
T Consensus       477 t~~W~~~~---~~p~~----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          477 TREWSMIK---SLSHT----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTEEEECC---CCSBC----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             CCcEEECC---CCCCC----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            76543221   11110    1112223323677888886644  79999998765332211   1111111222445554


Q ss_pred             -CCEEEEeec--C-----ceEEEeeeccce
Q psy988          173 -GKYIVSGSE--N-----QCIYIWKTHHDY  194 (408)
Q Consensus       173 -~~~l~~~~~--d-----g~i~i~d~~~~~  194 (408)
                       ++.++.|+.  +     ..+..||+.+..
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence             667777765  2     358888886643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.54  E-value=0.26  Score=40.52  Aligned_cols=95  Identities=6%  Similarity=-0.070  Sum_probs=46.3

Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC----CC-------eEEEEEccCcccceeecCc
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN----DS-------RIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~  158 (408)
                      .+..||..+.+... ...... .     ..........++..++.|+.    ++       .+..||..+.+-...-...
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~-~-----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p   97 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQ-I-----PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP   97 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTT-S-----CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS
T ss_pred             ceEEECCCCCceec-ccCCcc-C-----CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC
Confidence            47899998887544 111110 0     01112223346777777763    12       2778888776543221111


Q ss_pred             cccccceEEEEecCCCEEEEeecC-------ceEEEeeeccc
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSEN-------QCIYIWKTHHD  193 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~  193 (408)
                      .... -.+++ ..+++.++.|+.+       ..+.+||+.+.
T Consensus        98 ~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  137 (318)
T 2woz_A           98 SARC-LFGLG-EVDDKIYVVAGKDLQTEASLDSVLCYDPVAA  137 (318)
T ss_dssp             SCBC-SCEEE-EETTEEEEEEEEBTTTCCEEEEEEEEETTTT
T ss_pred             cccc-ccceE-EECCEEEEEcCccCCCCcccceEEEEeCCCC
Confidence            1111 11122 2266777777754       24677776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.42  E-value=0.31  Score=40.05  Aligned_cols=177  Identities=12%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             eEEEEeccCCeeEeEEE-e-CCceEEEEEcCCCCCEEEEEeC----CC-------cEEEEecCCCCceeeeeecCCceee
Q psy988            4 TVRLWHISRKECLCCFQ-H-IDFVTAICFHPRDDRYFLSGSL----DG-------KLRLWNIPDKKVAVWNEVEGQTKLI   70 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~-h-~~~v~~~~~sp~~~~~l~t~~~----dg-------~i~iw~~~~~~~~~~~~~~~~~~~v   70 (408)
                      .+..||..+.+-...-. . ...-....... ++.+++.|+.    ++       .+.+||..+.+......+.......
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            36778888777544211 1 11222223344 7788888873    12       1778888777654332222222112


Q ss_pred             EEEEEecCCCEEEEEecC-------CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------
Q psy988           71 TAANFCENGKFAVVGSYD-------GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------  137 (408)
Q Consensus        71 ~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------  137 (408)
                      ..+.+  +++.++.|+.+       ..+.+||..+.+......   .....   ..-..+.  .++..++.|+.      
T Consensus       104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r---~~~~~~~--~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A          104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN---LPIKV---YGHNVIS--HNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC---CSSCE---ESCEEEE--ETTEEEEECCEESSSCB
T ss_pred             ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC---CCCcc---cccEEEE--ECCEEEEEcCCCCCCCc
Confidence            22222  66777777754       357888888776543211   11110   0111122  35666666653      


Q ss_pred             CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----ceEEEeeeccc
Q psy988          138 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----QCIYIWKTHHD  193 (408)
Q Consensus       138 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  193 (408)
                      -..+.+||+.+.+-...-....... ..++ ..-+++.++.|+.+     ..+.+||+.+.
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRS-MFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCB-SCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcc-cceE-EEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            2458999998765332211111111 1122 22366777777653     34667776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.16  E-value=0.87  Score=42.71  Aligned_cols=348  Identities=9%  Similarity=0.028  Sum_probs=175.3

Q ss_pred             EEEEeccCCeeEeEEE-----eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC----CceeeEEEEE
Q psy988            5 VRLWHISRKECLCCFQ-----HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG----QTKLITAANF   75 (408)
Q Consensus         5 i~vwd~~~~~~~~~~~-----h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~   75 (408)
                      |..+|..+++......     ....|.++...+ ++.+.+ |+.+ -+..++..++..... ....    ....|.++..
T Consensus       123 l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~  198 (758)
T 3ott_A          123 LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGI-PLPVHSSQSNLFVNSLLE  198 (758)
T ss_dssp             EEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEE-CCCCCTTCSSCCEEEEEE
T ss_pred             ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEe-cCCCccccccceeEEEEE
Confidence            4556665554332211     134688888877 666544 5544 477888776654321 1111    1234788887


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      .+++..|..|+. +-+..++..+.+........        ...|.++...+++. |..|+. +-+.+++..+++.....
T Consensus       199 d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--------~~~i~~i~~d~~g~-lWigT~-~Gl~~~~~~~~~~~~~~  267 (758)
T 3ott_A          199 DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--------NNSIKSLALDGNGD-LLAGTD-NGLYVYHNDTTPLQHII  267 (758)
T ss_dssp             ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--------EEEEEEEEECTTCC-EEEEET-TEEEEECCTTSCCEEEC
T ss_pred             ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--------CCeEEEEEEcCCCC-EEEEeC-CceeEEecCCCcEEEEE
Confidence            777776666664 45888888766543221111        13578888776664 555554 45888887765432211


Q ss_pred             cC-----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          156 KG-----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       156 ~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      ..     ......+.++....+|. |..|+..| +.++............. .      .-......|.++....+|...
T Consensus       268 ~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~-~------~~~~~~~~v~~i~~D~~g~lW  338 (758)
T 3ott_A          268 HDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQ-I------TGTGDGNQFYSLFRDSKGFYW  338 (758)
T ss_dssp             CCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHH-H------SCSCCCCBEEEEEECTTCCEE
T ss_pred             cCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEeccc-C------CCCCCCceEEEEEEcCCCCEE
Confidence            11     01123366676676665 55565566 54443221111000000 0      000122457777777777665


Q ss_pred             eeecC------CCCC-CCceeeec-------CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc----
Q psy988          231 IAQME------PDKS-ESTGYVLN-------ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV----  292 (408)
Q Consensus       231 ~~~~~------~~~~-~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----  292 (408)
                      +.+..      .... ......+.       .....|.++.-.++++..+ |+ ++-+..||..+++.........    
T Consensus       339 iGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~  416 (758)
T 3ott_A          339 FGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTY  416 (758)
T ss_dssp             EEETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--C
T ss_pred             EeeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCC
Confidence            54321      1100 00111111       1234578888888877555 44 3469999988775433221111    


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc-cccccCccccceeeee-eccceEEEEecCCchhhhhccCCC
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF-SSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                      ....|.++...++|++.+ |+..+-+.+++..+..... ......  .......+ ....|.++...+            
T Consensus       417 ~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~i~~i~~d~------------  481 (758)
T 3ott_A          417 NTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAE--QNYSVHNGLSGMFINQIIPDN------------  481 (758)
T ss_dssp             BSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECS--EEECGGGTCSCSCEEEEEECT------------
T ss_pred             CCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecc--cccccccccccceeeeEEEcC------------
Confidence            123467777777776544 5555568888765310000 000000  00000000 123588888887            


Q ss_pred             CCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          371 KSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       371 ~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                          +|++.+.++..+-|..++..+.+
T Consensus       482 ----~g~lWi~~~t~~Gl~~~d~~~~~  504 (758)
T 3ott_A          482 ----EGNVWVLLYNNKGIDKINPRTRE  504 (758)
T ss_dssp             ----TSCEEEEETTCSSEEEEETTTTE
T ss_pred             ----CCCEEEEccCCCCcEEEeCCCCc
Confidence                77777633334447777776543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.12  E-value=0.31  Score=37.14  Aligned_cols=62  Identities=13%  Similarity=-0.026  Sum_probs=37.8

Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeee-----eEEeeccceeceeEEEEcCCCCEEEEecCCceEE
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-----CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY  319 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  319 (408)
                      ..+.|.|+|.+.++  .||.|+-++-.+...-     ...-+......+..+.|.|+|.+.++.  |+.++
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            34556666766666  5688887775431110     111122233456789999999988877  77754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.03  E-value=0.82  Score=42.31  Aligned_cols=184  Identities=10%  Similarity=0.107  Sum_probs=93.7

Q ss_pred             eEEEEeccCCeeEeEE-E-------eC-CceEEEEEcCCCCCEEEEEeCC------CcEEEEecCCCCceeeeeecCCce
Q psy988            4 TVRLWHISRKECLCCF-Q-------HI-DFVTAICFHPRDDRYFLSGSLD------GKLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~-~-------h~-~~v~~~~~sp~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      .+.+||+.+++-...- .       .. ..-.++.+.. ++.+++.||.+      ..+.+||..+........+.....
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~  491 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF  491 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence            4677787776544332 1       11 1123334433 56677777754      357889988866543322222111


Q ss_pred             eeEEEEEecCCCEEEEEecCC--EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC-CCeEEEeeC--C-----
Q psy988           69 LITAANFCENGKFAVVGSYDG--RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG-EDKILVTSN--D-----  138 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----  138 (408)
                      .-.+ ....+++.++.|+.++  .+.+||..+..............   ......++.+..+ +..++.|+.  +     
T Consensus       492 ~h~~-~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~---~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~  567 (695)
T 2zwa_A          492 RHSA-CSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ---NSLVSAGLEFDPVSKQGIILGGGFMDQTTVS  567 (695)
T ss_dssp             SCEE-EECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG---SCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred             cceE-EEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCC---cccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence            1222 2223788888887654  68999998876432211000110   1112223444444 556666654  2     


Q ss_pred             CeEEEEEccCccc-----ceeecC--ccccccceEEEEecCCCEEEEeecC--------ceEEEeeeccc
Q psy988          139 SRIRLYDLRDLNL-----SCKYKG--YVNVSSQIKASFSHDGKYIVSGSEN--------QCIYIWKTHHD  193 (408)
Q Consensus       139 g~i~i~d~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~  193 (408)
                      ..+.+||+.+.+.     -..+..  ..... -.+++...+++.++.|+.+        ..+.+||+.+.
T Consensus       568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          568 DKAIIFKYDAENATEPITVIKKLQHPLFQRY-GSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             CEEEEEEECTTCSSCCEEEEEEEECGGGCCB-SCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CcEEEEEccCCccccceEEEEcCCCCCCCcc-cceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            4688999988762     111111  11111 1123333337777777743        35788887654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.33  E-value=1  Score=37.52  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=37.4

Q ss_pred             CCCEEEEEeCC-CcEEEEecCC--CCceeeeeec-CCceeeEEEEEecCCCEEEEEec-C---------CEEEEEeccCC
Q psy988           34 DDRYFLSGSLD-GKLRLWNIPD--KKVAVWNEVE-GQTKLITAANFCENGKFAVVGSY-D---------GRCIFYTTDQL   99 (408)
Q Consensus        34 ~~~~l~t~~~d-g~i~iw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~   99 (408)
                      ++.+++.|+.+ ..+.++|+..  .+......+. .......++.  -+++.++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56677777654 5688888864  4443222222 1111122222  25677777765 2         46888998876


Q ss_pred             eee
Q psy988          100 KYH  102 (408)
Q Consensus       100 ~~~  102 (408)
                      +..
T Consensus        97 ~W~   99 (357)
T 2uvk_A           97 SWV   99 (357)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.32  E-value=0.92  Score=36.85  Aligned_cols=137  Identities=9%  Similarity=0.027  Sum_probs=78.1

Q ss_pred             EEEcCCCCCEEEEEeCC--------------CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe--cC--C
Q psy988           28 ICFHPRDDRYFLSGSLD--------------GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS--YD--G   89 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~d--------------g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g   89 (408)
                      --+++ ++++|+-+...              ..|+..++++.+..   .+....    +..|++++++|+-..  .+  .
T Consensus        58 ~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~---~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~  129 (302)
T 3s25_A           58 MYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST---VLDPDP----CIYASLIGNYIYYLHYDTQTAT  129 (302)
T ss_dssp             EEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE---EEECSC----EEEEEEETTEEEEEEESSSSCE
T ss_pred             eeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce---EeecCC----ccEEEEeCCEEEEEeecCCCCc
Confidence            34577 77777766543              35777777776543   232222    226778888888776  23  4


Q ss_pred             EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccceeecCccccccceEEE
Q psy988           90 RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  168 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  168 (408)
                      .|..-+++.... ..+. .         ..+  ..++++++.|+..+. ...|...++..+.....+.+..      ...
T Consensus       130 ~Iy~~~~dGs~~-~~lt-~---------~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~------~~~  190 (302)
T 3s25_A          130 SLYRIRIDGEEK-KKIK-N---------HYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNC------YKP  190 (302)
T ss_dssp             EEEEEETTSCCC-EEEE-S---------SCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCE------EEE
T ss_pred             eEEEEECCCCCe-EEEe-C---------CCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCc------cce
Confidence            555555554332 1111 1         011  356778888887765 5788888887665443333211      123


Q ss_pred             EecCCCEEEEeecCc--eEEEeeec
Q psy988          169 FSHDGKYIVSGSENQ--CIYIWKTH  191 (408)
Q Consensus       169 ~~~~~~~l~~~~~dg--~i~i~d~~  191 (408)
                      +.|++.+|+-....+  .|..-++.
T Consensus       191 ~~P~g~~iy~t~~~~~~~I~~~~ld  215 (302)
T 3s25_A          191 VVLDDTNVYYMDVNRDNAIVHVNIN  215 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEECSS
T ss_pred             eeecCCEEEEEEcCCCcEEEEEECC
Confidence            568888888765443  44444443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.21  E-value=1.2  Score=37.42  Aligned_cols=141  Identities=7%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             eEEEEeccCC--eeEeEEEe-------CCceEEEEEc---CC--C-CCEEEEE-eCCCcEEEEecCCCCceeee------
Q psy988            4 TVRLWHISRK--ECLCCFQH-------IDFVTAICFH---PR--D-DRYFLSG-SLDGKLRLWNIPDKKVAVWN------   61 (408)
Q Consensus         4 ~i~vwd~~~~--~~~~~~~h-------~~~v~~~~~s---p~--~-~~~l~t~-~~dg~i~iw~~~~~~~~~~~------   61 (408)
                      +|.+||+.+.  +.++.+.-       ...+..+.+.   |.  . +.++..+ +..+-|.++|+.+++.-...      
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5889999999  99988862       3457788877   21  1 2333333 34678999999887643211      


Q ss_pred             ------eecCC----ceeeEEEEEecC----CCEEEEEecCCEEEEEeccC-----CeeeEEEEEeeccccccCCCCeEE
Q psy988           62 ------EVEGQ----TKLITAANFCEN----GKFAVVGSYDGRCIFYTTDQ-----LKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        62 ------~~~~~----~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                            ...+.    ...+..++++|+    ++.|.-....+ -++|.+.+     ..........   +..+....-..
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~---G~kg~~s~~~~  279 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL---GNRGKYNDAIA  279 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE---EECCTTCCEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe---eecCCCCCcce
Confidence                  00111    136788888887    66666665443 23333321     1110000000   11111123344


Q ss_pred             EeeC-CCCCeEEEeeCCCeEEEEEccC
Q psy988          123 IEPM-PGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus       123 ~~~~-~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      ++.. .+|..+++--+.+.|..|+..+
T Consensus       280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          280 LAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            5665 4565555656778999999875

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.91  E-value=1.9  Score=38.13  Aligned_cols=78  Identities=8%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             CCceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCe------e---eeE-EeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          249 TGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLN------L---SCK-YKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~------~---~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                      ....+..+.++|||++++++ -.+.++.++|++...      .   ... .....-.......+|.++|....+---|..
T Consensus       321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecce
Confidence            34556778899999999886 457899999987421      1   000 111111224456899999966666778999


Q ss_pred             EEEeecccc
Q psy988          318 IYIWKTHHD  326 (408)
Q Consensus       318 i~iw~~~~~  326 (408)
                      |.-|++...
T Consensus       401 vvkWni~~a  409 (638)
T 3sbq_A          401 VVKWNMEEA  409 (638)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEeccHH
Confidence            999999764

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=94.14  E-value=2  Score=35.26  Aligned_cols=251  Identities=8%  Similarity=0.051  Sum_probs=123.2

Q ss_pred             CCEEEEEeCCCcEEEEecCCCC-------ceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCee---e-E
Q psy988           35 DRYFLSGSLDGKLRLWNIPDKK-------VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKY---H-T  103 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~-~  103 (408)
                      ...+++.+.+|.|+--.+.+-.       -..-..++ ....+..+........|+.-+..|.++-.....-..   . .
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            4578888888888866543211       01001222 223455554455566677777788776655432111   0 0


Q ss_pred             EEEEeeccccccCCCCeEEEeeCC---CCCeEEEeeCCCeEEEEEccCcccce-----eecCccccccceEEEEecCCCE
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMP---GEDKILVTSNDSRIRLYDLRDLNLSC-----KYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      ...+...... .....|..+...+   +...++..+.+|.++-..+.......     .+.... ...+..+........
T Consensus        82 G~~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~  159 (327)
T 3uc1_A           82 GQHVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD  159 (327)
T ss_dssp             CEEHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred             CEEHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence            0011011111 1233555554333   57799999999999998876533211     111111 122444444455567


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      |+..+..|.+..+....+..             .........+..+.+                        ..+..|.+
T Consensus       160 ill~T~~G~~~rf~~~~~ei-------------p~~gr~a~Gv~~i~L------------------------~~~d~Vv~  202 (327)
T 3uc1_A          160 LLLVSANGQSIRFSATDEAL-------------RPMGRATSGVQGMRF------------------------NIDDRLLS  202 (327)
T ss_dssp             EEEEETTSEEEEEECCTTTS-------------CCCCTTSBCEESSCC------------------------CTTCCEEE
T ss_pred             EEEEECCCeEEEEECccccc-------------CcCCcCCCCeeeecC------------------------CCCCEEEE
Confidence            88888889888777641000             000000011111111                        11223344


Q ss_pred             eccCCCCCeEEEecCCCeEEEEEcCCCeee-------eEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLS-------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       256 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      +...+++.+++..+..|.++.-.+......       ..+........+..+....+...++..+.+|.+.-++...
T Consensus       203 ~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          203 LNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            444445567888889999888876532221       1111111112344444334445666667777777777654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.03  E-value=4  Score=38.26  Aligned_cols=299  Identities=8%  Similarity=0.084  Sum_probs=153.4

Q ss_pred             EEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-c-CCceeeEEEEEecCCCE
Q psy988            5 VRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-E-GQTKLITAANFCENGKF   81 (408)
Q Consensus         5 i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~   81 (408)
                      +..||..+.+...... ....|.++.. . ++. |..++.+ -+..++..+++....... . .....|.++....+|.+
T Consensus        84 l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l  159 (758)
T 3ott_A           84 ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQI  159 (758)
T ss_dssp             EEEEETTTTEECCCSCCCCSCEEEEEE-E-TTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCE
T ss_pred             eEEEeCCCCEEECcccCCCceEEEEEe-c-CCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCE
Confidence            4566666554322111 2235777654 3 454 5556655 588889877665422110 0 11345788877777775


Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV  161 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  161 (408)
                      .+ ++.+ -+..++..+.+... ....  .........|.++...+++..|..|+. +-+..+|..+++... +... ..
T Consensus       160 Wi-gt~~-Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l-~~  231 (758)
T 3ott_A          160 YV-GTYN-GLCRYIPSNGKFEG-IPLP--VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF-HN  231 (758)
T ss_dssp             EE-EETT-EEEEEETTTTEEEE-ECCC--CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE-EE
T ss_pred             EE-EeCC-CHhhCccCCCceEE-ecCC--CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC-CC
Confidence            44 5544 57778877654321 1111  000111234788887777777777764 468888987654322 2111 12


Q ss_pred             ccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC---
Q psy988          162 SSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK---  238 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---  238 (408)
                      ..+.++....+|.. ..|+.+ -+.+++..+.....  ......   .........|.++....++...+.+.....   
T Consensus       232 ~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~--~~~~~~---~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~  304 (758)
T 3ott_A          232 NSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQH--IIHDSR---NIQSLTNNIIWNIFADQEHNIWLGTDYGISLSR  304 (758)
T ss_dssp             EEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEE--ECCCTT---CTTSCSCSCEEEEEECTTCCEEEEESSSEEEEC
T ss_pred             CeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEE--EEcCCC---CcCcCCcCeEEEEEEcCCCCEEEEeCCcccccc
Confidence            23666777767764 445544 47788875432111  000000   000112345788887777766555422100   


Q ss_pred             CCCceeee-------cCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCe--eeeEEeec-----cceeceeEEEEcC
Q psy988          239 SESTGYVL-------NATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN--LSCKYKGY-----VNVSSQIKASFSH  304 (408)
Q Consensus       239 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~-----~~~~~v~~~~~s~  304 (408)
                      ........       ......|.++....+|...+. +.+| +..++..+++  ....+...     -....|.++.-.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~  382 (758)
T 3ott_A          305 YNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK  382 (758)
T ss_dssp             CCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT
T ss_pred             cCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECC
Confidence            00000000       012345778887877776554 4444 6666655432  11122210     0123477788788


Q ss_pred             CCCEEEEecCCceEEEeecccc
Q psy988          305 DGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       305 ~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +|++.+ |+ ++-+..|+..++
T Consensus       383 ~g~lWi-gt-~~GL~~~~~~~~  402 (758)
T 3ott_A          383 EQQLWI-AT-DGSINRYDYATR  402 (758)
T ss_dssp             TSCEEE-EE-TTEEEEEETTTT
T ss_pred             CCCEEE-Ee-CCcHhhcCcCCC
Confidence            887655 34 356888887664

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.68  E-value=3.3  Score=36.05  Aligned_cols=29  Identities=3%  Similarity=0.173  Sum_probs=24.0

Q ss_pred             CeEEEeeCCCCC-eEEEeeCCCeEEEEEcc
Q psy988          119 KISGIEPMPGED-KILVTSNDSRIRLYDLR  147 (408)
Q Consensus       119 ~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~  147 (408)
                      ....|+|.|++. .|+++...|.|++++..
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            567899999996 67778888999999754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.54  E-value=3.4  Score=35.90  Aligned_cols=113  Identities=12%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             eeEEEEEecCCC-EEEEEecCCEEEEEeccCCeeeEE-EEEeecccc---ccCCCCeEEEeeCCC---CCeEEEe-eC--
Q psy988           69 LITAANFCENGK-FAVVGSYDGRCIFYTTDQLKYHTQ-IHVRSTRGK---NATGRKISGIEPMPG---EDKILVT-SN--  137 (408)
Q Consensus        69 ~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~-~~--  137 (408)
                      ....|+|.|+|. .|+++...|.|++++......... ..+......   ......+..|+++|+   +..|++. +.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            457899999996 566667899999997543211100 111111000   011356889999996   3444443 21  


Q ss_pred             C----------CeEEEEEccCc----------ccceeecCccccccceEEEEecCCCEEEEeec
Q psy988          138 D----------SRIRLYDLRDL----------NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE  181 (408)
Q Consensus       138 d----------g~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  181 (408)
                      +          ..|.-|.+..+          +.+..+.........-.+.|.|||.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          13444555421          11111111111122446899999987666554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.02  E-value=4.9  Score=33.76  Aligned_cols=127  Identities=16%  Similarity=0.147  Sum_probs=72.6

Q ss_pred             ceEEEEE-cCCCCCEEEEEeC--C---CcEEEEecCC--------CCceeeeeecC-----CceeeEEEEEecCCCEEEE
Q psy988           24 FVTAICF-HPRDDRYFLSGSL--D---GKLRLWNIPD--------KKVAVWNEVEG-----QTKLITAANFCENGKFAVV   84 (408)
Q Consensus        24 ~v~~~~~-sp~~~~~l~t~~~--d---g~i~iw~~~~--------~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~   84 (408)
                      -...++. +. +++++++--.  +   -++...+...        +...  ..+..     +--.|..+...+++++-+.
T Consensus        27 ~P~gv~vd~~-~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll--~PYP~w~~~~~lvsV~~v~iD~~~rLWVL  103 (381)
T 3q6k_A           27 ISTAFAYDAE-GEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLL--NKFSGHKTGKELTSIYQPVIDDCRRLWVV  103 (381)
T ss_dssp             CCCEEEEETT-TTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCB--EECTTCSSSCSSSCEEEEEECTTCEEEEE
T ss_pred             ceeeeeeecC-CCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccc--cCCCCCccccceEEeeEEEEcCCCcEEEE
Confidence            3456777 56 7777776543  2   2455554431        1220  12221     2235777777776654332


Q ss_pred             --Ee-------------cCCEEEEEeccCC--eeeEEEEEeeccccccCCCCeEEEeeC---CC----CCeEEEee-CCC
Q psy988           85 --GS-------------YDGRCIFYTTDQL--KYHTQIHVRSTRGKNATGRKISGIEPM---PG----EDKILVTS-NDS  139 (408)
Q Consensus        85 --~~-------------~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~l~~~~-~dg  139 (408)
                        |-             .--.|.+||+.+.  +......+......  ....+..+.+.   |+    +.+.+.+. ..+
T Consensus       104 DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~  181 (381)
T 3q6k_A          104 DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFGGFAVDVANPKGDCSETFVYITNFLRG  181 (381)
T ss_dssp             ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCC--CGGGEEEEEEEESCTTTTSCSEEEEEEETTTT
T ss_pred             eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcc--cCCccceEEEecccCCCCCCccEEEEEcCCCC
Confidence              10             1236889999998  87777766433222  23567888877   22    33444443 467


Q ss_pred             eEEEEEccCcccceee
Q psy988          140 RIRLYDLRDLNLSCKY  155 (408)
Q Consensus       140 ~i~i~d~~~~~~~~~~  155 (408)
                      .|.++|+.+++.-+.+
T Consensus       182 gLIVydl~~~~swRv~  197 (381)
T 3q6k_A          182 ALFIYDHKKQDSWNVT  197 (381)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             cEEEEECCCCcEEEEc
Confidence            8999999988765544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.41  E-value=11  Score=36.48  Aligned_cols=38  Identities=13%  Similarity=0.149  Sum_probs=32.8

Q ss_pred             eeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe
Q psy988          252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK  289 (408)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  289 (408)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45667778888999999999999999999999887754

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.15  E-value=7.8  Score=32.77  Aligned_cols=107  Identities=7%  Similarity=-0.061  Sum_probs=51.4

Q ss_pred             CCEEEEEeCCCcEEEEecCC-C-CceeeeeecCCceeeEEEEEec-CCCEEEEEecCC----EEEEEeccCCeeeEEEEE
Q psy988           35 DRYFLSGSLDGKLRLWNIPD-K-KVAVWNEVEGQTKLITAANFCE-NGKFAVVGSYDG----RCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        35 ~~~l~t~~~dg~i~iw~~~~-~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~  107 (408)
                      ...|..|...| +.+++... + ....... ......|.+|++.| +...|.++...|    .|...+ +.++.-.....
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~   98 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATR   98 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCc
Confidence            44677787776 55555443 2 2221111 12245699999998 334455555555    344332 22221111111


Q ss_pred             ee-cccccc-----CCCCeEEEeeCCC--CCeEEEeeCCCeEEEE
Q psy988          108 RS-TRGKNA-----TGRKISGIEPMPG--EDKILVTSNDSRIRLY  144 (408)
Q Consensus       108 ~~-~~~~~~-----~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~  144 (408)
                      .. ......     ....|.++++.|.  ...+++++..+.|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S  143 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS  143 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence            00 000000     1125778888873  5667777666655544

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.87  E-value=7  Score=31.77  Aligned_cols=155  Identities=12%  Similarity=0.090  Sum_probs=79.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCcee-------eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeee----
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAV-------WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH----  102 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----  102 (408)
                      +..++++.+.+|.|+--.+..-....       ...+... ..+..+......+.|+..+..|.+.-+....-...    
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a   80 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence            56788899999999877665422110       0112222 23444444455566777778888776655321111    


Q ss_pred             EEEEEeeccccccCCCCeEEEeeC---CCCCeEEEeeCCCeEEEEEccCcccce-----eecCccccccceEEEEecCCC
Q psy988          103 TQIHVRSTRGKNATGRKISGIEPM---PGEDKILVTSNDSRIRLYDLRDLNLSC-----KYKGYVNVSSQIKASFSHDGK  174 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  174 (408)
                      .......... ......|..+...   .++.+++..+..|.++-..+..-....     .+....+ ..+..+....+..
T Consensus        81 ~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~  158 (307)
T 1zi0_A           81 RGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED  158 (307)
T ss_dssp             CCEEGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred             CCeEhhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence            0000000001 1123356555432   346678999999999998875322211     1111111 2344444444555


Q ss_pred             EEEEeecCceEEEeeec
Q psy988          175 YIVSGSENQCIYIWKTH  191 (408)
Q Consensus       175 ~l~~~~~dg~i~i~d~~  191 (408)
                      .++..+.+|.+..++..
T Consensus       159 ~i~l~T~~G~~irf~~~  175 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKES  175 (307)
T ss_dssp             EEEEEETTSEEEEEEGG
T ss_pred             EEEEECCCCcEEEEEHH
Confidence            67777788887777653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.66  E-value=30  Score=33.46  Aligned_cols=39  Identities=15%  Similarity=0.050  Sum_probs=33.2

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  107 (408)
                      .+.++...++..++++-+.|+++|+|++.+++.......
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            567777888889999999999999999999988766544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.73  E-value=17  Score=29.84  Aligned_cols=167  Identities=10%  Similarity=0.123  Sum_probs=93.0

Q ss_pred             CCceEEEEEcCC--CCCEEEEEeCCCcEEEEecCCCCc-----eeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEE
Q psy988           22 IDFVTAICFHPR--DDRYFLSGSLDGKLRLWNIPDKKV-----AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY   94 (408)
Q Consensus        22 ~~~v~~~~~sp~--~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw   94 (408)
                      .+.|.++..-++  +..+++.++.+|.|+--.+..-..     .....+... ..+..+........++..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            445655543331  467899999999999988754221     111233333 344455455556678888899999888


Q ss_pred             ecc--CCeeeEE--EEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccc-------eeecCcccccc
Q psy988           95 TTD--QLKYHTQ--IHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-------CKYKGYVNVSS  163 (408)
Q Consensus        95 ~~~--~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~  163 (408)
                      ...  .-.....  .-....  .......|.++...+++..++..+..|.++.-.+..-...       ..+........
T Consensus       173 ~~~~~eip~~gr~a~Gv~~i--~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~  250 (327)
T 3uc1_A          173 SATDEALRPMGRATSGVQGM--RFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR  250 (327)
T ss_dssp             ECCTTTSCCCCTTSBCEESS--CCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred             ECcccccCcCCcCCCCeeee--cCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence            876  3211000  000000  0112346777766666778999999999998876542221       11221111122


Q ss_pred             ceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          164 QIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                      +..+....+...++..+.+|.+.-++..
T Consensus       251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          251 LVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             EEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            3333333344566666777777666653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.66  E-value=19  Score=30.37  Aligned_cols=159  Identities=7%  Similarity=-0.077  Sum_probs=74.3

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCC----cEEEEecCCCC-ceeeee---ecC--------CceeeEEEEEecC--CCEEE
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDG----KLRLWNIPDKK-VAVWNE---VEG--------QTKLITAANFCEN--GKFAV   83 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg----~i~iw~~~~~~-~~~~~~---~~~--------~~~~v~~~~~~~~--~~~l~   83 (408)
                      ...|.+|++.|.+...|..++..|    .|...+ +.++ ......   +..        ....|.++++.|.  ...+.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            456999999984455565565555    344332 2222 221111   111        1135778888862  45666


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEeecccc-----------ccCCCCeEEEeeCCC-CCeEEEeeCCCeEEEEEccCccc
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGK-----------NATGRKISGIEPMPG-EDKILVTSNDSRIRLYDLRDLNL  151 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  151 (408)
                      ++...+.|...+-..... ...........           ......+.++.+.|. ...++++..++.|...+- .++.
T Consensus       133 ~g~~~ggl~~S~DgG~tW-~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t  210 (394)
T 3b7f_A          133 AGTSPQGLFRSTDHGASW-EPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD  210 (394)
T ss_dssp             EEEETTEEEEESSTTSBC-EECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred             EEecCCcEEEEcCCCCCe-EECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence            666666655543222221 11100000000           011235788999884 456666655554443321 2221


Q ss_pred             ceeecC-ccc----------cccceEEEEecC-CCEEEEeecCc
Q psy988          152 SCKYKG-YVN----------VSSQIKASFSHD-GKYIVSGSENQ  183 (408)
Q Consensus       152 ~~~~~~-~~~----------~~~~~~~~~~~~-~~~l~~~~~dg  183 (408)
                      -..+.. ...          ...+..+.+.|. ...|+++...+
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            111111 000          123567788885 35676666544

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=82.57  E-value=18  Score=29.39  Aligned_cols=205  Identities=14%  Similarity=0.114  Sum_probs=103.9

Q ss_pred             cCCCEEEEEecCCEEEEEeccCCeeeEEE--EEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC------
Q psy988           77 ENGKFAVVGSYDGRCIFYTTDQLKYHTQI--HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD------  148 (408)
Q Consensus        77 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------  148 (408)
                      ++..++++.+.+|.|+--.+...+.....  .....  .......+..+........++..+..|.++-+....      
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~--~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSF--DLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECC--CCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceec--ccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            56678889999999998877654321100  00000  001123455555555566788888888887776542      


Q ss_pred             ---cccceeecCccccccceEEEEec---CCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          149 ---LNLSCKYKGYVNVSSQIKASFSH---DGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                         |..+...........+..+...+   +..+++..+..|.++...+..-...                 ....+..+.
T Consensus        84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-----------------r~~G~~~i~  146 (312)
T 1suu_A           84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-----------------KSRGVIVIK  146 (312)
T ss_dssp             ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------------------CEECBC
T ss_pred             cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-----------------CCCcEEEEe
Confidence               11111111111112233333222   4567888889998888766431000                 011122222


Q ss_pred             EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCee-------eeEEeecccee
Q psy988          223 FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL-------SCKYKGYVNVS  295 (408)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~  295 (408)
                      +.++                        ..+..+....++..++..+.+|.+..+....-..       +..+.-. ...
T Consensus       147 L~~~------------------------d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d  201 (312)
T 1suu_A          147 LNDK------------------------DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGD  201 (312)
T ss_dssp             CCTT------------------------CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTC
T ss_pred             cCCC------------------------CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCC
Confidence            2221                        1122222222345577778888888887654111       1111111 122


Q ss_pred             ceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          296 SQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       296 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                      .+..+..-+++..|++.+..|..+...+..
T Consensus       202 ~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          202 LFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             CEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            455555545566788888899988888765

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=82.46  E-value=21  Score=29.93  Aligned_cols=109  Identities=8%  Similarity=0.003  Sum_probs=63.2

Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCee-------eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKY-------HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      -|+..++++.+.+|.|+--.+...+.       ......       .....+..+........++..+..|.++-+....
T Consensus         4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~e   76 (370)
T 3l6v_A            4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQ   76 (370)
T ss_dssp             CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred             ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHH
Confidence            46778899999999999876543221       111111       1124566666566667788788888877665432


Q ss_pred             ---------cccceeecCccccccceEEEEe---cCCCEEEEeecCceEEEeeec
Q psy988          149 ---------LNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       149 ---------~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~  191 (408)
                               |..+..+........+.++..-   .++.+|+.++..|.++...+.
T Consensus        77 ip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~  131 (370)
T 3l6v_A           77 LPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS  131 (370)
T ss_dssp             SCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred             CcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence                     2221111111122334444332   245689999999999887764

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=80.39  E-value=25  Score=29.61  Aligned_cols=109  Identities=8%  Similarity=0.013  Sum_probs=55.3

Q ss_pred             CCCEEEEEecCCEEEEEeccCCee------eEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCccc
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKY------HTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL  151 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  151 (408)
                      .....+....||.|..|-....-.      ............  ....+..++++......++-..+|.|+.|-......
T Consensus        61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~Gq  138 (389)
T 3kci_A           61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI--QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGK  138 (389)
T ss_dssp             ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGG--TTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGT
T ss_pred             CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccc--cCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCc
Confidence            344556667889999986432110      000111111111  112445566666666777778899999996543111


Q ss_pred             c-----------eeecCccccccceEEEEecCCCEEEEeecCceEEEeeec
Q psy988          152 S-----------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  191 (408)
Q Consensus       152 ~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (408)
                      +           ..+.. .....+..+  +....+.++...+|.|+.|-..
T Consensus       139 LG~g~~~~~~~p~~v~~-l~~~~i~~v--a~G~~hs~alt~~G~v~~wG~n  186 (389)
T 3kci_A          139 LGHGNRSPCDRPRVIES-LRGIEVVDV--AAGGAHSACVTAAGDLYTWGKG  186 (389)
T ss_dssp             TCSSSCCCEEEEEECGG-GTTSCEEEE--EECSSEEEEEETTSCEEEEECC
T ss_pred             CCCCCCccCcCCeEecc-cCCCeEEEE--EeCcCeEEEEeCCCeEEEeCCC
Confidence            1           01111 111123333  3344556666788999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-14
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (233), Expect = 2e-22
 Identities = 57/332 (17%), Positives = 111/332 (33%), Gaps = 30/332 (9%)

Query: 6   RLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG 65
           + W     E      H   VT + FHP      +S S D  +++W+           ++G
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE--RTLKG 57

Query: 66  QTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP 125
            T  +   +F  +GK     S D     +     +    +H       +        +  
Sbjct: 58  HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS--------VSI 109

Query: 126 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI 185
           MP  D I+  S D  I++++++       + G  +         + DG  I S S +Q +
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG--HREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 186 YIWKTHHDYAK---------FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA---- 232
            +W       K            +       +  I       T     P P L+      
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 233 --QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG 290
             +M    +      L      + G+    G   IL  ++D  +R++D ++         
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 291 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWK 322
           + +  + +   F     Y+V+GS +Q + +W+
Sbjct: 288 HEHFVTSL--DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 31/204 (15%), Positives = 75/204 (36%), Gaps = 22/204 (10%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
            DKT+++W +    C+  F        +    +D     S S D  +R+W +  K+    
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC--K 178

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYH---------------TQI 105
            E+     ++   ++     ++ +    G     +     +                T +
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI 165
            + +  G +     + G+    G   IL  ++D  +R++D ++         + +  + +
Sbjct: 239 CLMTLVGHDNW---VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 166 KASFSHDGKYIVSGSENQCIYIWK 189
              F     Y+V+GS +Q + +W+
Sbjct: 296 --DFHKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 5e-17
 Identities = 45/340 (13%), Positives = 96/340 (28%), Gaps = 36/340 (10%)

Query: 12  RKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV------WNEVEG 65
             E      H   V  + F   D  Y  +G  +   +++ + D  +            + 
Sbjct: 52  DVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109

Query: 66  QTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEP 125
           +    +++   +    +V  S DG+ +    +                   G +      
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 126 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI 185
                   + S      +         C     +       A    DGKYI +GS ++ +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 186 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA------------- 232
            +W +   +     +    +   E    H   V   VF    + +++             
Sbjct: 230 RVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

Query: 233 ------QMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC 286
                   +   S +           +  +     ++ IL  S D  +  +D +  N   
Sbjct: 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

Query: 287 KYKGYVN----VSSQIKASFSHDGKYIVSGSENQCIYIWK 322
             +G+ N    V+    +S   +     +GS +    IWK
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 50/355 (14%), Positives = 103/355 (29%), Gaps = 49/355 (13%)

Query: 20  QHIDFVTAICFHPRDDRY--FLSGSLDGKLRLWNIPDKKVAVWNEVE--GQTKLITAANF 75
            H   +               L    +    L+N    +       +    T ++    F
Sbjct: 11  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 70

Query: 76  CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT 135
             +G++   G      ++  +D                                  ++  
Sbjct: 71  SNDGEYLATGCNKTTQVYRVSDG--------------------------------SLVAR 98

Query: 136 SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA 195
            +D      D  +LN S      + + S     FS DGK++ +G+E++ I IW   +   
Sbjct: 99  LSDDSAANKDPENLNTSSSPSSDLYIRS---VCFSPDGKFLATGAEDRLIRIWDIENRKI 155

Query: 196 KFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG 255
                  +++ +          +            +   +    + +  +    G     
Sbjct: 156 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRT----VRIWDLRTGQCSLTLSIEDGVTTVA 211

Query: 256 IEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS-----FSHDGKYIV 310
           + P  G   I   S D  +R++D     L  +        +  K S     F+ DG+ +V
Sbjct: 212 VSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 311 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA 365
           SGS ++ + +W   +   K  S   +          H   V         E I++
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 1   MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPR-----DDRYFLSGSLDGKLRLWNI 52
            D+ V  W       L   Q H + V ++          +   F +GS D K R+W  
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 36/324 (11%), Positives = 90/324 (27%), Gaps = 23/324 (7%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD---KKVA 58
           D  +          +    H + V A+       R+  +G   G +++W+I     K   
Sbjct: 31  DALIGPGIPRHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPV 88

Query: 59  VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
              +   +   I +     +G   +VG        +         +  + S+        
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 178
                +           +         +R           +++S+     ++      V 
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208

Query: 179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK 238
             + +     + H   ++  S+       W  +   ++ V         +  +   E   
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC- 267

Query: 239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI 298
                         +  ++        + T  D+ +  +         + K   +V S  
Sbjct: 268 --------------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS-- 311

Query: 299 KASFSHDGKYIVSGSENQCIYIWK 322
               S D KYIV+GS ++   +++
Sbjct: 312 -CDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI 52
            D  +  W       +   +    V +      DD+Y ++GS D K  ++ +
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 28/358 (7%), Positives = 86/358 (24%), Gaps = 50/358 (13%)

Query: 42  SLDGKLRLWNIPDKKVAVWNEVE--------GQTKLITAANFCENGKFAVVGSYDGRCIF 93
           + DG+++    P   +                  +++ A       +    G   G    
Sbjct: 18  TADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV 76

Query: 94  YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC 153
           +        + +       ++     I   + +P +   L+   ++              
Sbjct: 77  WDISHPGNKSPVSQLDCLNRDNY---IRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR 132

Query: 154 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA 213
                 + +    A        +     +         H+       +   +       +
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192

Query: 214 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSR 273
           ++                   E  + +   +                        +    
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL--------AVGME 244

Query: 274 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 333
               ++  +N   KY+ +++ S  +   F++ GK+ VS  ++  +  W+T +  + F S 
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS- 303

Query: 334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVF 391
                         ++ V     +                     +V+   +    V+
Sbjct: 304 ------------KESSSVLSCDISV----------------DDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 17/146 (11%), Positives = 46/146 (31%), Gaps = 13/146 (8%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           +D TVR W +     L        + ++ + P  +   +      +     +        
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV----GMESSNVEVLHVNKPDK 258

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
            ++      + +  F   GK+ V    D     + T          +  ++  ++    +
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP-----YGASIFQSKESSS----V 309

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDL 146
              +    +  I+  S D +  +Y++
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEV 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 43/310 (13%), Positives = 90/310 (29%), Gaps = 33/310 (10%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
           H+  + A+ +   D R  +S S DGKL +W+         + +  ++  +    +  +G 
Sbjct: 54  HLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPSGN 110

Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
           +   G  D  C  Y     + + ++                  +          T     
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170

Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 200
           I                  +    +  S + D +  VSG+ +    +W    D  +    
Sbjct: 171 IETGQ-------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW----DVREGMCR 219

Query: 201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA---------QMEPDKSESTGYVLNATGR 251
           +            H + +    F P                       E   Y  +    
Sbjct: 220 QT--------FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

Query: 252 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS 311
            I+ +        +L   +D    ++D    + +    G+ N  S +    + DG  + +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVAT 329

Query: 312 GSENQCIYIW 321
           GS +  + IW
Sbjct: 330 GSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 8e-15
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 54/189 (28%)

Query: 1   MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
            D + +LW +    C   F  H   + AICF P +   F +GS D   RL+++   +  +
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELM 262

Query: 60  WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK 119
               +     IT+ +F ++G+  + G  D                               
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDF------------------------------ 292

Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
                                  ++D    + +    G+ N  S +    + DG  + +G
Sbjct: 293 --------------------NCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATG 330

Query: 180 SENQCIYIW 188
           S +  + IW
Sbjct: 331 SWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 42/278 (15%), Positives = 68/278 (24%), Gaps = 99/278 (35%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
            D T  LW I   +    F              D R F+SG+ D   +LW++ +      
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-- 219

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
               G    I A  F  NG     GS D  C  +     +                    
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL------------------ 261

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
                                             Y     +      SFS  G+ +++G 
Sbjct: 262 --------------------------------MTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE 240
           ++    +W    D  K              +  H+  V+C         +          
Sbjct: 290 DDFNCNVW----DALKADRAGV--------LAGHDNRVSCLGVTDDGMAV---------- 327

Query: 241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD 278
                  ATG                  S DS +++++
Sbjct: 328 -------ATG------------------SWDSFLKIWN 340

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.2 bits (172), Expect = 2e-14
 Identities = 31/301 (10%), Positives = 74/301 (24%), Gaps = 16/301 (5%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
           H   +TA+     D +   S   +G +  W+I     +     +    +IT       G 
Sbjct: 11  HNKAITALSSSA-DGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKTTSKGD 68

Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
              V   D   +          ++        +                   +    D  
Sbjct: 69  LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP--------------LGLAVSADGDIA 114

Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 200
           +          S      V +S         + K  V+                +     
Sbjct: 115 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 174

Query: 201 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP 260
                     +   N            ++I   +  +   +          K++ +   P
Sbjct: 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234

Query: 261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 320
              ++   S D+ + ++++   +         +  S + +    +   IVS  ++  I  
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

Query: 321 W 321
           W
Sbjct: 295 W 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 6e-06
 Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 1   MDKTVRLWHISRKECLCCFQ----HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIP 53
           +D +V +W++++             +  V ++ +   ++   +S   D  ++ WN+P
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 12/87 (13%), Positives = 21/87 (24%)

Query: 8   WHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT 67
            +         +       A      D+    +GSLD  + +WN+               
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 68  KLITAANFCENGKFAVVGSYDGRCIFY 94
                +    N    V    D    F+
Sbjct: 269 MSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.7 bits (171), Expect = 3e-14
 Identities = 35/306 (11%), Positives = 82/306 (26%), Gaps = 7/306 (2%)

Query: 24  FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-QTKLITAANF--CENGK 80
           F T + + P  +           +R  +  D KV    +  G  + ++T   F   +  +
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIE--PMPGEDKILVTSND 138
           +   G   G+ I +     K    + V            IS I          ++    D
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS 198
           +          N   +  G+    +      S   + +  G +   ++       ++   
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 199 SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP 258
                +  F   ++         +       I                +    +      
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 259 MPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSGSENQ 316
              + +   T   D+ IR++D+       K+          +      G   I+S S + 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 317 CIYIWK 322
            +  ++
Sbjct: 319 TLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 1   MDKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI 52
            D T+R+W ++  +C+  +           +      +   +S SLDG L  + +
Sbjct: 271 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 14/190 (7%), Positives = 36/190 (18%), Gaps = 3/190 (1%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
            D             L            C   +          D    ++          
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
           ++     +   +                              +   ++         +  
Sbjct: 197 SDRTHHKQ--GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG-KYIVSG 179
                     K      D+ IR++D+       K+          +      G   I+S 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 180 SENQCIYIWK 189
           S +  +  ++
Sbjct: 315 SLDGTLNFYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 6e-13
 Identities = 34/357 (9%), Positives = 85/357 (23%), Gaps = 57/357 (15%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE-----------VEGQTKL 69
           H   + ++        + +S S DG L++W+          +           +     L
Sbjct: 13  HDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 70  ITAANFCENGKFAVVGSYDGRCIFY-------TTDQLKYHTQIHVRSTRGKNATGRKISG 122
                           S+ G  +FY       T   +     +     +  +    K   
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 123 IEPMPGEDKILVTSNDSRIRLYDL---------------RDLNLSCKYKGYVNVSSQIKA 167
                   +++ T       ++                   L L    +  +  S    +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 168 -SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE----------------- 209
              S  G  I +G  N  + I +       ++   +                        
Sbjct: 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 210 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS 269
              +++            E I +   P  S        A    +  +      + +    
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308

Query: 270 NDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKA-SFSHDGKYIVSGSENQCIYIWKTH 324
            D ++R +D++          + + +  +    +    G  +         ++ K  
Sbjct: 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 365

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 21/215 (9%), Positives = 48/215 (22%), Gaps = 40/215 (18%)

Query: 168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP 227
           S S    + VS S +  + +W       +    +   +   +    H  V+         
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 228 ELIIAQMEPDKS-----------------------ESTGYVLNATGRKISGIEPMPGEDK 264
             ++A                              +S     +    K           +
Sbjct: 79  LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138

Query: 265 ILVTSNDSRIRLYDL---------------RDLNLSCKYKGYVNVSSQIKA-SFSHDGKY 308
           ++ T       ++                   L L    +  +  S    +   S  G  
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 197

Query: 309 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG 343
           I +G  N  + I +       ++   +        
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 41/350 (11%), Positives = 105/350 (30%), Gaps = 50/350 (14%)

Query: 8   WHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ 66
           W     +     + H D V   C         +SGS D  L++W+    K      + G 
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGH 56

Query: 67  TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI------ 120
           T  + ++   +N   +       +     T +  +    H  + R  +   +++      
Sbjct: 57  TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 116

Query: 121 ----------------------SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 158
                                 +         +++  + D  ++++D          +G+
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 176

Query: 159 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV 218
               +    S   DG ++VSGS +  I +W    +                G++  + ++
Sbjct: 177 ----TNRVYSLQFDGIHVVSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNIL 230

Query: 219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYD 278
                    +  +   +    +    +      + +       ++ ++ +S+D  ++L+D
Sbjct: 231 VSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286

Query: 279 LRDLNLSCKYKGYVNVSSQ---IKASFSHDGKYIVSGSENQC----IYIW 321
           L+            +  S     +   S+       GS N      + + 
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 27/195 (13%), Positives = 51/195 (26%), Gaps = 35/195 (17%)

Query: 162 SSQIKASFSHDGKYIVSGSENQCIYIWKTH----------HDYAKFSSVRRDRNDFWEGI 211
              +       G  IVSGS++  + +W             H    +SS  RD        
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 75

Query: 212 KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNAT---------------------G 250
                V           L                + +                      G
Sbjct: 76  DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 135

Query: 251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 310
              +         +++  + D  ++++D          +G+    +    S   DG ++V
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQFDGIHVV 191

Query: 311 SGSENQCIYIWKTHH 325
           SGS +  I +W    
Sbjct: 192 SGSLDTSIRVWDVET 206

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.8 bits (148), Expect = 3e-11
 Identities = 24/298 (8%), Positives = 60/298 (20%), Gaps = 10/298 (3%)

Query: 25  VTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVV 84
              +   P         +    +    +              +   T A    +G +   
Sbjct: 20  AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDT--EIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 85  GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLY 144
           G   G    + T Q  +  +  +    G                    +    +    ++
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD----SESKRIAAVGEGRERFGHVF 131

Query: 145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR 204
                  +    G     + +    S   + I    +N           +          
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 205 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDK 264
                     +   +                         + N              +  
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251

Query: 265 ILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 321
            + + S D  I+++++  L +         +  Q         + +VS S N  I   
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ-LGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 24/181 (13%), Positives = 45/181 (24%), Gaps = 2/181 (1%)

Query: 8   WHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT 67
             +                      +  R F   S      +           +     T
Sbjct: 130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 189

Query: 68  KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMP 127
           K + +  +  +G        DG  + Y              S +    +G     +   P
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG-LTWSP 248

Query: 128 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYI 187
              KI   S D  I+++++  L +         +  Q         + +VS S N  I  
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ-LGIIWTKQALVSISANGFINF 307

Query: 188 W 188
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 1   MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI 52
            DKT+++W+++  +                      +  +S S +G +   N 
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 1/90 (1%)

Query: 8   WHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT 67
                ++                   D     S S D  +++WN+   KV       G  
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTR 281

Query: 68  KLITAANFCENGKFAVVGSYDGRCIFYTTD 97
                       +  V  S +G   F   +
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 4/79 (5%)

Query: 264 KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-SFSHDGKYIVSGSENQCIYIWK 322
             +   N + +    +  L  +  Y  +   S Q      S  G Y  SG  +  + IW 
Sbjct: 30  DKIQYCNGTSVYTVPVGSLTDTEIYTEH---SHQTTVAKTSPSGYYCASGDVHGNVRIWD 86

Query: 323 THHDYAKFSSVRRDRNDFW 341
           T        +     +   
Sbjct: 87  TTQTTHILKTTIPVFSGPV 105

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 3e-11
 Identities = 26/328 (7%), Positives = 80/328 (24%), Gaps = 44/328 (13%)

Query: 1   MDKTVRLWHISRK----ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
            D ++ ++    +    + L   ++   +    F    D     G++ G++   ++    
Sbjct: 31  WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

Query: 57  VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT 116
                        I       + K           +    +       +   ++   N T
Sbjct: 91  SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---NNT 147

Query: 117 GRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVNVSSQIKASFSHDGK 174
             K           +++V  N+S+++ + L           +  +    +  A    + +
Sbjct: 148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207

Query: 175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 234
                S +  + +         ++S +R              +                 
Sbjct: 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP-------------- 253

Query: 235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 294
                             ++ IE  P    +    +D  I  ++L+       +  +   
Sbjct: 254 ------------------VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295

Query: 295 SSQIKASFSHDGKYIVSGSENQCIYIWK 322
           S       +     +   + +       
Sbjct: 296 SV---VKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 9/258 (3%)

Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-SFSHDGKYIV- 177
           IS I+ +P +  +L+TS D  + +Y       +      +     +   +F  +    + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 178 --SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME 235
             +               +   ++   +           + ++  +       +      
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133

Query: 236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNL--SCKYKGYVN 293
                      N T  K           +++V  N+S+++ + L           +  + 
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193

Query: 294 VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW---EGIKAHNAV 350
              +  A    + +     S +  + +         ++S +R                  
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 351 VTCAVFAPCPELIIAQME 368
           V    F+P  + +     
Sbjct: 254 VNSIEFSPRHKFLYTAGS 271

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDK 55
            D  +  W++  ++ +  F   +  + +      D      + D   +     D+
Sbjct: 271 SDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKTNAAIDQ 324

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.3 bits (144), Expect = 1e-10
 Identities = 32/327 (9%), Positives = 90/327 (27%), Gaps = 25/327 (7%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
            ++ ++   ++  D         + ++ ++     K    +E++     +T  ++  +  
Sbjct: 6   LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
             V    D     +T     +   + +           +     P   +  +   S    
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA----RCVRWAPNEKKFAVGSGSRVIS 120

Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV 200
           I  ++  +    CK+      S+ +   +  +   + +GS +    I+  +    +    
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 201 RRDRNDFWEGIKAHNAVVTC--AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP 258
                      +      +    V   C     +++     +ST  + +A  +       
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 259 MPG----------EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS------- 301
                        E  ++   +D    L+          + G ++V  Q           
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300

Query: 302 -FSHDGKYIVSGSENQCIYIWKTHHDY 327
             + D K    GS      +   H + 
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSLHKNS 327

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 37/335 (11%), Positives = 87/335 (25%), Gaps = 21/335 (6%)

Query: 2   DKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA 58
           +  V ++  S  + +   +   H   VT + + P D    ++   D    +W +  +   
Sbjct: 28  NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 59  VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGR 118
               +    +      +  N K   VGS          +Q              ++    
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST--- 143

Query: 119 KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG----YVNVSSQIKASFSHDGK 174
            +  ++  P    +   S D + R++      +  +             ++    S    
Sbjct: 144 -VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202

Query: 175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM 234
           ++     +            +       D+      + +    +    F     L+ A  
Sbjct: 203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 262

Query: 235 EPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV 294
           +        Y   A      G   +P +      +   R +  D +  +      G    
Sbjct: 263 D-CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 321

Query: 295 SSQIKA----SFSHDGKY----IVSGSENQCIYIW 321
           S    +    S    GK       +   +  + IW
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 11/82 (13%), Positives = 27/82 (32%)

Query: 260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIY 319
               +I +  N+  + +Y+         ++   +        ++ D   IV+   ++  Y
Sbjct: 17  KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY 76

Query: 320 IWKTHHDYAKFSSVRRDRNDFW 341
           +W       K + V    N   
Sbjct: 77  VWTLKGRTWKPTLVILRINRAA 98

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 27/298 (9%), Positives = 77/298 (25%), Gaps = 23/298 (7%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLS--GSLDGKLRLWNIPDKK-- 56
            D+   +W +  +        +    A               GS    + +     +   
Sbjct: 71  TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130

Query: 57  VAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD----------QLKYHTQIH 106
               +  +     + + ++  N      GS D +C  ++                     
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 190

Query: 107 VRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK 166
                  +++   + G+       ++   S+DS + L D                   + 
Sbjct: 191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AVATLASETLPLLA 248

Query: 167 ASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 225
            +F  +   + +G +    ++ + +      F               +   +     F  
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-----SQRGLTARERFQN 303

Query: 226 CPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDL 282
             +   ++           +   +  +IS +     +     T   D  + ++D+R L
Sbjct: 304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 301 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP 360
           +++ D   I     N  ++I++   +                 +K HN  VT   +AP  
Sbjct: 14  AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE----------LKEHNGQVTGVDWAPDS 63

Query: 361 ELII 364
             I+
Sbjct: 64  NRIV 67

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 14/195 (7%), Positives = 46/195 (23%), Gaps = 13/195 (6%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
           + + + ++ +  ++            A  F           S        +      +  
Sbjct: 157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFE 215

Query: 61  NE-----VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNA 115
                  +                  +  G YD   ++  +  +      +      +++
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275

Query: 116 TGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY 175
                S                   +  YD++   ++       ++        S D K 
Sbjct: 276 I-LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLR------LSADRKT 328

Query: 176 IVSGSENQCIYIWKT 190
           ++   ++  IY +  
Sbjct: 329 VMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 29/332 (8%), Positives = 73/332 (21%), Gaps = 21/332 (6%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGK-LRLWNIPDKKVAVW 60
                +  +S    L        +  +         F+ G+ +G  L +++    K   +
Sbjct: 23  RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF 81

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKI 120
            E           +            ++   +   T +     +           +    
Sbjct: 82  EE-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140

Query: 121 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 180
                 P +           I +YD+    +        +  +     F  D K +   S
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA---FDADSKNLYYLS 197

Query: 181 ENQCIYIWKTHHDYAKFSSVRRDR---------NDFWEGIKAHNAVVTCAVFAPCPELII 231
                           F  V +           N      ++  +           +   
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY 291
                         L ++    S                   +  YD++   ++      
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNL 317

Query: 292 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKT 323
            ++        S D K ++   ++  IY +  
Sbjct: 318 TDLR------LSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 5/55 (9%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKK 56
              +  + +  ++     +  + +T +     D +  +    DGK+  + +   +
Sbjct: 297 KGVLLKYDVKTRKVT---EVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 7   LWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ 66
           +     +  +     I   +          Y+      G L  +++  +KV         
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTRKV------TEV 313

Query: 67  TKLITAANFCENGKFAVVGSYDGRCIFYTTD 97
              +T      + K  +V   DG+   +  +
Sbjct: 314 KNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 41/324 (12%), Positives = 91/324 (28%), Gaps = 7/324 (2%)

Query: 1   MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAV 59
            DK +R++    K+ L     H   V A+ +        +SGS D  +R+W+I       
Sbjct: 31  DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTH 88

Query: 60  WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRK 119
             E    T         +N K+ V GS D     +   +                    +
Sbjct: 89  VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148

Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG 179
            +          +      S      +     +      V     +     H  +   + 
Sbjct: 149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208

Query: 180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS 239
            +++         D         +    +        V    +         A       
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268

Query: 240 ESTGYVLNATGR--KISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQ 297
           ++  Y    +     +S I      D ILV+ ++++  +Y+LR  +    +   +  + Q
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR--SGKLVHANILKDADQ 326

Query: 298 IKASFSHDGKYIVSGSENQCIYIW 321
           I +        + +  ++   ++ 
Sbjct: 327 IWSVNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 39/347 (11%), Positives = 87/347 (25%), Gaps = 32/347 (9%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
           H+  V   C    +D Y ++G+ D  +R+++  +KK     ++ G    + A  +   G 
Sbjct: 11  HMTSVIT-CLQF-EDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHGGI 66

Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
                +     ++        H      ST            I        I+  S D+ 
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL-------DIVEYKNIKYIVTGSRDNT 119

Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFS-- 198
           + ++ L   +    +    +          +     V       +     H +       
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 199 --SVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGI 256
             ++        + +   +                  +      +        G  +  +
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239

Query: 257 EPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK-----ASFSHDGKYIVS 311
           +       +L  S+   +       +            S          +F      +VS
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS 299

Query: 312 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP 358
           GSENQ   I+    +      V  +       I      +    F  
Sbjct: 300 GSENQ-FNIY----NLRSGKLVHAN-------ILKDADQIWSVNFKG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 35/322 (10%), Positives = 80/322 (24%), Gaps = 40/322 (12%)

Query: 34  DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VVGSYDGRCI 92
              Y +  +    L + ++    V     +  +    TA     + + A V+ ++ G   
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM-MAPDNRTAYVLNNHYGDIY 65

Query: 93  FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS------------R 140
               D  K     ++ S  G+   GR +      P   ++  T N +            R
Sbjct: 66  GIDLDTCKNTFHANLSSVPGE--VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWK----------- 189
           + ++   D   +   + +           + DG   V+G +   + +             
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 190 -------THHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST 242
                         +               A                    ++    ++ 
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKA-S 301
                            P  D   +    +R+  YDL+      K     N+       +
Sbjct: 244 TQEFADLTELYFTGLRSPK-DPNQIYGVLNRLAKYDLKQR----KLIKAANLDHTYYCVA 298

Query: 302 FSHDGKYIVSGSENQCIYIWKT 323
           F   G  +  G     + ++  
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 6/74 (8%), Positives = 19/74 (25%), Gaps = 1/74 (1%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
              +  + + +++ +           + F          G     L ++N    +     
Sbjct: 271 LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 62  EVEGQTKLITAANF 75
           ++ G     T    
Sbjct: 330 KLPGGDMSTTTPQV 343

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 32/311 (10%), Positives = 78/311 (25%), Gaps = 25/311 (8%)

Query: 36  RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFA-VVGSYDGRCIFY 94
            Y L+ +   KL + +     V     +               G+ A    +     +  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 95  --TTDQLKYHTQIHVRSTRGKNATGRKISG----IEPMPGEDKILVTSNDSRIRLYDLRD 148
              T +      +     R K+  G  +S     +       ++ +T  + +     L D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 149 LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN--- 205
                + K +         +++ DG  +     +  +   +             +     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 206 --DFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED 263
             D       H +    A         I   +P    +    ++    +++  E    + 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 264 ----------KILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS 313
                     K       + +  +DL       +     +  S    + S DG  +  G 
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYS---VNVSTDGSTVWLGG 298

Query: 314 ENQCIYIWKTH 324
               +  +   
Sbjct: 299 ALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 27/309 (8%), Positives = 65/309 (21%), Gaps = 35/309 (11%)

Query: 2   DKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA 58
              + +    +                      P     + + +    L   ++   +  
Sbjct: 10  PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69

Query: 59  VWNEVEG---QTKLITAANFCENGKFAVVGSYDG---RCIFYTTDQLKYHTQIHVRSTRG 112
              ++     + K +  A    +GK   +           F               S R 
Sbjct: 70  GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129

Query: 113 KNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV------------- 159
                R+I+ +       K+     D  +   +   L      + +              
Sbjct: 130 AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189

Query: 160 ------NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA 213
                  V +    +   D       +    +              VR     ++     
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF----- 244

Query: 214 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSR 273
             AV      A     ++   + +K+ S   V          +        + +      
Sbjct: 245 STAVNPAKTRAFGAYNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGD 302

Query: 274 IRLYDLRDL 282
           +  YD   L
Sbjct: 303 LAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 4/57 (7%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV 57
               +  + + +   +          ++     D      G   G L  ++    + 
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEK 313

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 46/316 (14%), Positives = 93/316 (29%), Gaps = 44/316 (13%)

Query: 17  CCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC 76
           C  +    V  + +   DD+  +SG  D  +++W+    +      + G T  +    + 
Sbjct: 10  CRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY- 63

Query: 77  ENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS 136
                      D R I   +                        + +        ++  S
Sbjct: 64  -----------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 112

Query: 137 NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK 196
            D  I ++D+         +  +            D KYIVS S ++ I +W T      
Sbjct: 113 KDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST---- 167

Query: 197 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS------ESTGYVLNATG 250
                       E ++  N            + ++     D +      E    +    G
Sbjct: 168 -----------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 216

Query: 251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK-----ASFSHD 305
            +           +I+  + D +I+++DL          G + + + ++          D
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276

Query: 306 GKYIVSGSENQCIYIW 321
              IVS S +  I IW
Sbjct: 277 EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 9/146 (6%)

Query: 1   MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW 60
            D+T+++W+ S  E +           I      DR  +SGS D  +RLW+I        
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 213

Query: 61  NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFY-TTDQLKYHTQIHVRSTRGKNATGRK 119
                +           + K  V G+YDG+   +     L           R       +
Sbjct: 214 L----EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269

Query: 120 ISGIEPMPGEDKILVTSNDSRIRLYD 145
           +  ++      +I+ +S+D  I ++D
Sbjct: 270 VFRLQFDE--FQIVSSSHDDTILIWD 293

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 21/328 (6%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
              + L   S  E          V          RY      DGK+ + ++  K+     
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVA 99

Query: 62  EV---EGQTKLITAANFCENGKFAVVGSYDGR--CIFYTTDQLKYHTQIHVRSTRGKNAT 116
           E+        + T+       K+A+ G+Y      I           Q     T  +   
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159

Query: 117 G---RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG 173
               R  + +      + I+      +I L D  DLN + K                   
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-NLKTTEISAERFLHDGGLDGSH 218

Query: 174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ 233
           +Y ++ +  +   +     +    +           G  A+    T         +    
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278

Query: 234 MEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN 293
           +    ++  G+  NA   KI    P  G   + + ++ +   LY    LN   +      
Sbjct: 279 VALIGTDPEGHPDNA--WKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE------ 330

Query: 294 VSSQIKASFSHDGKYIVSGSENQCIYIW 321
             S   A F  D K +     +      
Sbjct: 331 -ISGSVAVF--DIKAMTGDGSDPEFKTL 355

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 34/306 (11%), Positives = 79/306 (25%), Gaps = 36/306 (11%)

Query: 21  HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK 80
           H   +TA+  +P      +SGS DG++  W+            +  + LI + +  +  +
Sbjct: 12  HNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQE 59

Query: 81  FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR 140
           ++ +   D   +   T                                +    V +ND  
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVA-----------------SANNDGFTAVLTNDDD 102

Query: 141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW---KTHHDYAKF 197
           + +      ++    +     S+   +            +                    
Sbjct: 103 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR 162

Query: 198 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE 257
           +          E   A   V+   +        +         S    ++    +    E
Sbjct: 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222

Query: 258 PMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ 316
               ED +   S D+ I +Y ++  + +      +      +          +VS   + 
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPSTLVSSGADA 279

Query: 317 CIYIWK 322
           CI  W 
Sbjct: 280 CIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 6e-06
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 1   MDKTVRLWHISR-KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNI 52
           +D  + ++ + R  + +     H D V  + +        +S   D  ++ WN+
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 20/214 (9%), Positives = 55/214 (25%), Gaps = 8/214 (3%)

Query: 2   DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWN 61
              + L     K+ +        V          RY L    D ++ + ++  K+     
Sbjct: 41  AGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVA 99

Query: 62  EVE---GQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKN---- 114
           E++       + ++       ++ + G+Y          +     QI        +    
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159

Query: 115 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK 174
               +++ I       + +V   ++   L        +                +    +
Sbjct: 160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR 219

Query: 175 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW 208
           Y ++ + N          D    + V   +    
Sbjct: 220 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 33/293 (11%), Positives = 75/293 (25%), Gaps = 15/293 (5%)

Query: 2   DKTVRLWHISRKECLCCFQHIDF---VTAICFHPRDDRYFLSGSLDGKLRLWNI-PDKKV 57
            + + +W+++ +  L   Q +D    V  +   P     ++    + ++  + I PD   
Sbjct: 13  SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 72

Query: 58  AVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATG 117
             +         +T  +    G+F  VGSY+   +  T  +      +            
Sbjct: 73  LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHS 132

Query: 118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV 177
             IS          +            D   +         V  +      F  + +Y  
Sbjct: 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192

Query: 178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE--------- 228
             +E           D        +  +   E            +               
Sbjct: 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 252

Query: 229 -LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS-RIRLYDL 279
            + +  +  D S  +      T  +  G         ++     S  I +Y++
Sbjct: 253 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.92
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.92
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.48
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.45
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.36
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.33
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.25
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.22
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.04
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.93
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.77
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.54
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.4
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.08
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.01
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.0
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.81
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.43
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.39
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.7
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.41
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.16
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.67
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.15
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.22
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	92.8
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.67
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.23
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.5
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.28

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-48  Score=324.18  Aligned_cols=315  Identities=20%  Similarity=0.306  Sum_probs=266.1

Q ss_pred             EEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE
Q psy988            7 LWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG   85 (408)
Q Consensus         7 vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   85 (408)
                      .|.....+ ...+. |.+.|++++|+| ++++||||+.||+|+|||+.+++..  ..+.+|...|.+++|+|++.+++++
T Consensus         2 ~w~p~~~~-~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~~h~~~V~~~~~~~~~~~~~~~   77 (317)
T d1vyhc1           2 EWIPRPPE-KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASC   77 (317)
T ss_dssp             CCCCCSSC-SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccCCCCCc-cEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEE--EEEeCCCCcEEEEeeeccccccccc
Confidence            46554443 34454 999999999999 9999999999999999999998876  6889999999999999999999999


Q ss_pred             ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccce
Q psy988           86 SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQI  165 (408)
Q Consensus        86 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  165 (408)
                      ..++.+.+|+....+....        ...+...+.++.++|+++.+++++.|+.+++||+++++....+..+...  +.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~  147 (317)
T d1vyhc1          78 SADMTIKLWDFQGFECIRT--------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--VR  147 (317)
T ss_dssp             ETTSCCCEEETTSSCEEEC--------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EE
T ss_pred             ccccccccccccccccccc--------cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc--ce
Confidence            9999999999887654322        2345578999999999999999999999999999999988888776554  67


Q ss_pred             EEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceee
Q psy988          166 KASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYV  245 (408)
Q Consensus       166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
                      ++++++++++|++++.|+.|++|+..+..            ....+..+...+.++.++|++.......           
T Consensus       148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------  204 (317)
T d1vyhc1         148 MVRPNQDGTLIASCSNDQTVRVWVVATKE------------CKAELREHRHVVECISWAPESSYSSISE-----------  204 (317)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECCSCGGGGGGG-----------
T ss_pred             eeecccCCCEEEEEeCCCeEEEEeeccce------------eeEEEecCCCCceEEEEeeccccceeec-----------
Confidence            89999999999999999999999997643            3345677888999999999877654321           


Q ss_pred             ecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccc
Q psy988          246 LNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHH  325 (408)
Q Consensus       246 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  325 (408)
                          ............+.++++++.|+.|++||+++++++..+.+|..  .+.+++|+|++++|++|+.||.|++||+.+
T Consensus       205 ----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         205 ----ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             ----CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             ----cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence                12223334456788899999999999999999999999988765  889999999999999999999999999988


Q ss_pred             cCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          326 DYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      +            +++..+.+|.+.|++++|+|                ++++|+||+.||+|+|||
T Consensus       279 ~------------~~~~~~~~h~~~V~~~~~s~----------------~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         279 K------------RCMKTLNAHEHFVTSLDFHK----------------TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             S------------CCCEEEECCSSCEEEEEECS----------------SSSCEEEEETTSEEEEEC
T ss_pred             C------------cEEEEEcCCCCCEEEEEEcC----------------CCCEEEEEeCCCeEEEeC
Confidence            6            67788999999999999999                999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-47  Score=318.66  Aligned_cols=290  Identities=13%  Similarity=0.201  Sum_probs=237.4

Q ss_pred             eeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCce---eeeeecCCceeeEEEEEecCCCEEEEEecCCE
Q psy988           14 ECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA---VWNEVEGQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        14 ~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      +.+..++|...|++++|+| ++++|++|+ ||.|+|||+.++...   ......+|...|.+++|+|++++|++++.||.
T Consensus        43 ~~~~~~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEECCCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            5566777999999999999 999999997 899999999765432   22345678999999999999999999999999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      |++||+...........      ..|...+.++.|+|++..+++++.++.|++|++++++.......+...  +.+++|+
T Consensus       121 i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--v~~l~~s  192 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG--ASCIDIS  192 (337)
T ss_dssp             EEEEECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEC
T ss_pred             ccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence            99999886544322221      235568999999999999999999999999999998887777766544  7789999


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      +++..+++++.|+.+++||++++.....             .                                   .+.
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~-------------~-----------------------------------~~~  224 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLREGRQLQQ-------------H-----------------------------------DFT  224 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEE-------------E-----------------------------------ECS
T ss_pred             ccccccccccccccccccccccceeecc-------------c-----------------------------------ccc
Confidence            9999999999999999999875432110             1                                   233


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKF  330 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  330 (408)
                      ..|.+++|+|+++++++++.|+.+++||+++++... ...|  ...|.+++|+|++++|++|+.||.|++||+.++    
T Consensus       225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~--~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~----  297 (337)
T d1gxra_         225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG----  297 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----
T ss_pred             cceEEEEEcccccccceecccccccccccccccccc-cccc--ccccceEEECCCCCEEEEEeCCCeEEEEECCCC----
Confidence            456666777778888999999999999999887643 3333  447899999999999999999999999999886    


Q ss_pred             cccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          331 SSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       331 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                              +.+.. ..|.+.|.+++|+|                ++++|++|+.||+|+|||+
T Consensus       298 --------~~~~~-~~~~~~v~~~~~s~----------------d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         298 --------ASIFQ-SKESSSVLSCDISV----------------DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --------CEEEE-EECSSCEEEEEECT----------------TSCEEEEEETTSCEEEEEE
T ss_pred             --------CEEEE-ccCCCCEEEEEEeC----------------CCCEEEEEeCCCeEEEEEE
Confidence                    33333 45889999999999                9999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-45  Score=317.27  Aligned_cols=318  Identities=16%  Similarity=0.266  Sum_probs=242.0

Q ss_pred             CceEEEEeccCCee-----EeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee----------------
Q psy988            2 DKTVRLWHISRKEC-----LCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW----------------   60 (408)
Q Consensus         2 Dg~i~vwd~~~~~~-----~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~----------------   60 (408)
                      ++.+.+|+....+.     ...++|.+.|+||+|+| +|++||+|+ |+.|+|||+.+++....                
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT  114 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccc
Confidence            56788999765432     34456999999999999 999999987 89999999988765421                


Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      .....|...|.+++|+|++++|++|+.||.|++|+....+.....        ..|...|.++.+++++..+++++.++.
T Consensus       115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             ----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc--------cccccccccccccccccccccccccee
Confidence            122356778999999999999999999999999999987654433        245679999999999999999999999


Q ss_pred             EEEEEccCcccceeecCccccccceEEEE-ecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVSSQIKASF-SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +++||.++.........+..   ...+.+ .+++++|++++.||.|++||.+++........                  
T Consensus       187 i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~------------------  245 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS------------------  245 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------
T ss_pred             eeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc------------------
Confidence            99999998876665554433   333444 45889999999999999999876433221000                  


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEE----------e
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY----------K  289 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----------~  289 (408)
                                            .......|...|.+++|+|++++|++++.|+.|++||+++++.....          .
T Consensus       246 ----------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         246 ----------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             ----------------------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence                                  00011245566777777778888999999999999999876433221          1


Q ss_pred             eccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCC
Q psy988          290 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEP  369 (408)
Q Consensus       290 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  369 (408)
                      ...+...+.+++|+|++++|++|+.||.|++||+.++            +++..+.+|.+.|.++++++.          
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------------~~~~~l~~H~~~V~~~~~~~~----------  361 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------------NPLLMLQGHRNSVISVAVANG----------  361 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECSS----------
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC------------cEEEEEeCCCCCEEEEEEecC----------
Confidence            1123347889999999999999999999999999987            678889999999999987652          


Q ss_pred             CCCCCcccEEEEEecCCeEEEEeCC
Q psy988          370 DKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       370 ~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ..+++++++||||+.||+|+||+++
T Consensus       362 ~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         362 SSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cccCCCCCEEEEEeCCCEEEEEeee
Confidence            2345599999999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-44  Score=307.98  Aligned_cols=326  Identities=11%  Similarity=0.083  Sum_probs=241.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      +.++|+|++|+| ++++||+|+.||.|+|||..+++......+.+|.++|.+++|+|++++|++++.|++|++||+.+..
T Consensus         6 ~~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            458899999999 9999999999999999999988776668899999999999999999999999999999999998776


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec--CccccccceEEEEecCCCEEEE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK--GYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      .......      ..|...|.+++|+|+++.|++++.|+.|++|+++.........  .......+.+++|+|++++|++
T Consensus        85 ~~~~~~~------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          85 WKPTLVI------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             EEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ccccccc------ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            5433321      2355689999999999999999999999999988765432221  1222345889999999999999


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      |+.|+.+++|+............                      .+.+       ..............+...|.+++|
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~----------------------~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~  209 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAP----------------------TPWG-------SKMPFGELMFESSSSCGWVHGVCF  209 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCC----------------------BTTB-------SCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             cccCcEEEEEeeccCcccccccc----------------------cccc-------ccccceeeeeeccCccCcEEEEEe
Confidence            99999999999864321100000                      0000       000011122233467778889999


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccccc---
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRR---  335 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---  335 (408)
                      +|++++|++++.|+.|++||+.+++.+..+..+..  ++.+++|+|++++|++|. |+.+++|..............   
T Consensus       210 s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
T d1k8kc_         210 SANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDV  286 (371)
T ss_dssp             CSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCC
T ss_pred             ecccccccccccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecC
Confidence            99999999999999999999999999888887655  789999999999888776 677777665543221110000   


Q ss_pred             --------------------------CccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEE
Q psy988          336 --------------------------DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIR  389 (408)
Q Consensus       336 --------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  389 (408)
                                                ...........|.+.|+++++.|.+..            ....|+|+|.||.|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~------------~~~~~~T~g~Dg~v~  354 (371)
T d1k8kc_         287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA------------KCSQFCTTGMDGGMS  354 (371)
T ss_dssp             C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT------------SCSEEEEEETTSEEE
T ss_pred             ccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCc------------ceEEEEEEcCCCeEE
Confidence                                      000011112248899999999873210            224699999999999


Q ss_pred             EEeCCCCC
Q psy988          390 VFLNKTKP  397 (408)
Q Consensus       390 iw~~~~~~  397 (408)
                      +||+++.+
T Consensus       355 iW~~~~~~  362 (371)
T d1k8kc_         355 IWDVRSLE  362 (371)
T ss_dssp             EEEHHHHH
T ss_pred             EEeCCcCh
Confidence            99986543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.2e-44  Score=295.87  Aligned_cols=285  Identities=15%  Similarity=0.150  Sum_probs=229.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      +.+.+..++++| +++.|+.++ ++.|.+|++++....  ..+.+|...|++++|+|+|++|++|+.||+|++||+.+..
T Consensus        16 ~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~--~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          16 ARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDT--EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCC--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCcee--EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            556778899999 899998885 577999999988766  5788999999999999999999999999999999999876


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCccccccceEEEEecCCCE-EE
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY-IV  177 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  177 (408)
                      .......      ..|..+|.+++|+|++++|++++.  +..+++|++++++....+.+|...  +.+++|+|++++ |+
T Consensus        92 ~~~~~~~------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~--v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1          92 HILKTTI------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA--MNSVDFKPSRPFRII  163 (311)
T ss_dssp             CCEEEEE------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC--EEEEEECSSSSCEEE
T ss_pred             ccccccc------ccccCccccccccccccccccccccccccccccccccccccccccccccc--cccccccccceeeec
Confidence            5433322      235578999999999999999875  456999999999888888877654  788999999986 78


Q ss_pred             EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          178 SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +|+.||.|++||+++....            ..+.                                   .+...|.++.
T Consensus       164 sgs~d~~i~i~d~~~~~~~------------~~~~-----------------------------------~~~~~i~~v~  196 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFK------------STFG-----------------------------------EHTKFVHSVR  196 (311)
T ss_dssp             EEETTSCEEEEETTTBEEE------------EEEC-----------------------------------CCSSCEEEEE
T ss_pred             ccccccccccccccccccc------------cccc-----------------------------------cccccccccc
Confidence            8999999999998754221            1222                                   3445566666


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeecc-----ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV-----NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                      ++|+++++++++.|+.|++||+.+++....+....     +...|.+++|+|++++|++|+.||.|+|||++++      
T Consensus       197 ~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~------  270 (311)
T d1nr0a1         197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL------  270 (311)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred             cCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC------
Confidence            66777788999999999999999988777765321     2347899999999999999999999999999887      


Q ss_pred             cccCccccceeeeeecc---ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          333 VRRDRNDFWEGIKAHNA---VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                            +++..+..|..   .+.++.|                  +++.|++++.||.|++||++
T Consensus       271 ------~~~~~l~~~~~~~~~~~~~~~------------------~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         271 ------KVEKTIPVGTRIEDQQLGIIW------------------TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ------EEEEEEECCSSGGGCEEEEEE------------------CSSCEEEEETTCCEEEEETT
T ss_pred             ------cEEEEEECCCCccceEEEEEe------------------cCCEEEEEECCCEEEEEeCC
Confidence                  56666665543   3444555                  44679999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-43  Score=296.95  Aligned_cols=294  Identities=17%  Similarity=0.356  Sum_probs=237.8

Q ss_pred             eeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEE
Q psy988           14 ECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCI   92 (408)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   92 (408)
                      +..+++. |.+.|++++|+| ++++||||+.||+|+|||+.+++..  ..+..|...|.+++|+|+++++++++.|+.+.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEE--EEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             eeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeE--EEEecccccEEeeEeeccceeeeeecccceee
Confidence            4556665 999999999999 9999999999999999999998776  68889999999999999999999999999999


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecC
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD  172 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (408)
                      +|+............ ..   ..|........ ...+..+.....+.....+...............  ..+....+.+.
T Consensus       123 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  195 (340)
T d1tbga_         123 IYNLKTREGNVRVSR-EL---AGHTGYLSCCR-FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPD  195 (340)
T ss_dssp             EEESSSSCSCCCEEE-EE---CCCSSCEEEEE-EEETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEECTT
T ss_pred             cccccccccccccce-ec---ccccccccccc-cccccccccccccccccccccccccccccccccc--eeEeeeccccc
Confidence            999876543322211 11   12333344333 3446678888889999999887766554444433  33667888999


Q ss_pred             CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCce
Q psy988          173 GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRK  252 (408)
Q Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (408)
                      +.++++++.|+.|++||++++..            ...+..                                   |...
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~------------~~~~~~-----------------------------------h~~~  228 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMC------------RQTFTG-----------------------------------HESD  228 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEE------------EEEECC-----------------------------------CSSC
T ss_pred             cceeEEeecCceEEEEECCCCcE------------EEEEeC-----------------------------------CCCC
Confidence            99999999999999999865422            222333                                   4445


Q ss_pred             eeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccc
Q psy988          253 ISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSS  332 (408)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  332 (408)
                      |++++|+|++++|++++.|+.|++||++..+....+........+.+++|+|++++|++|+.||.|++||+.++      
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~------  302 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------  302 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC------
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC------
Confidence            55566666677789999999999999999998888876666668999999999999999999999999999886      


Q ss_pred             cccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          333 VRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       333 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                            +++..+.+|.++|++++|+|                ++++|+||+.||.|+|||
T Consensus       303 ------~~~~~~~~H~~~V~~l~~s~----------------d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         303 ------DRAGVLAGHDNRVSCLGVTD----------------DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEECCCSSCEEEEEECT----------------TSSCEEEEETTSCEEEEC
T ss_pred             ------cEEEEEcCCCCCEEEEEEeC----------------CCCEEEEEccCCEEEEeC
Confidence                  67788999999999999999                999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-43  Score=289.49  Aligned_cols=270  Identities=13%  Similarity=0.145  Sum_probs=219.3

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      ++.|.+||+++++..+.+. |.+.|++++|+| ++++||+|+.||+|+|||+.++.......+..|..+|.+++|+|+++
T Consensus        37 ~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~  115 (311)
T d1nr0a1          37 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  115 (311)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCEEEEEECCCCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc
Confidence            4579999999998888886 999999999999 99999999999999999999987765567889999999999999999


Q ss_pred             EEEEEecC--CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEEEEEccCcccceeecC
Q psy988           81 FAVVGSYD--GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        81 ~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      +|++++.+  ..+++|++++.+....        ...|...|.+++|+|++++ |++|+.|+.|++||+++++....+..
T Consensus       116 ~l~~~~~~~~~~~~v~~~~~~~~~~~--------l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~  187 (311)
T d1nr0a1         116 RIAAVGEGRERFGHVFLFDTGTSNGN--------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE  187 (311)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCBCBC--------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred             cccccccccccccccccccccccccc--------ccccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            99999864  5699999987654322        2356678999999999886 77789999999999999988888877


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      +...  +.++.++|++++|++++.|+.|++||..++........     ...                            
T Consensus       188 ~~~~--i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-----~~~----------------------------  232 (311)
T d1nr0a1         188 HTKF--VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-----DSL----------------------------  232 (311)
T ss_dssp             CSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-----TTS----------------------------
T ss_pred             cccc--ccccccCccccccccccccccccccccccccccccccc-----ccc----------------------------
Confidence            6554  88999999999999999999999999876433211000     000                            


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-eeceeEEEEcCCCCEEEEecCCc
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGSENQ  316 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg  316 (408)
                             ....|...|++++|+|++++|++|+.||.|+|||+++++++..+..+.. ...+.  .+.+++++|++++.||
T Consensus       233 -------~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~--~~~~~~~~l~s~s~dG  303 (311)
T d1nr0a1         233 -------KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL--GIIWTKQALVSISANG  303 (311)
T ss_dssp             -------SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE--EEEECSSCEEEEETTC
T ss_pred             -------ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE--EEEecCCEEEEEECCC
Confidence                   1124555677777777788889999999999999999999998876543 22333  4445667899999999


Q ss_pred             eEEEeecc
Q psy988          317 CIYIWKTH  324 (408)
Q Consensus       317 ~i~iw~~~  324 (408)
                      .|++||.+
T Consensus       304 ~i~~wd~d  311 (311)
T d1nr0a1         304 FINFVNPE  311 (311)
T ss_dssp             CEEEEETT
T ss_pred             EEEEEeCC
Confidence            99999963

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-42  Score=285.66  Aligned_cols=293  Identities=13%  Similarity=0.158  Sum_probs=217.5

Q ss_pred             CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeee-cCCceeeEEEEEecCCCEEEEEecCCE
Q psy988           13 KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEV-EGQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        13 ~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      |+..+.+. |.+.|++++|+| ++++|+||+.||+|++||+++++..  ..+ ..|...|++++|+|+++ +++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISN--RVFPDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--ECSSCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCCcEEEEEeeccce-eecccceee
Confidence            45667776 999999999999 9999999999999999999998766  344 57899999999999997 556678999


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEe
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS  170 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  170 (408)
                      +++|+.........     ......+...+.+++++|++..+++++ ++.+++|+....  ......    ..+.+++|+
T Consensus        78 v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~~~----~~~~~~~~s  145 (299)
T d1nr0a2          78 LKVVPAGGSGVDSS-----KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVPIS----YNSSCVALS  145 (299)
T ss_dssp             EEEECSSSSSSCTT-----SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEECS----SCEEEEEEC
T ss_pred             EEEeccCCcccccc-----ccccccccccccccccccccccccccc-cccccccccccc--cccccc----ccccccccc
Confidence            99999875432110     011123445788999999998777665 468999986432  222221    235678999


Q ss_pred             cCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          171 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      |++++|++++.||.|++||++++.....           ...                                   .|.
T Consensus       146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~-----------~~~-----------------------------------~~~  179 (299)
T d1nr0a2         146 NDKQFVAVGGQDSKVHVYKLSGASVSEV-----------KTI-----------------------------------VHP  179 (299)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEE-----------EEE-----------------------------------ECS
T ss_pred             cccccccccccccccccccccccccccc-----------ccc-----------------------------------ccc
Confidence            9999999999999999999865321110           011                                   234


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcc
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAK  329 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  329 (408)
                      ..|.+++|+|++++|++++.|+.|++||+.++......... .+...|.+++|+|++++|++|+.||.|++||+.+....
T Consensus       180 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            45666777777888899999999999999877654433221 12347899999999999999999999999999875321


Q ss_pred             ccccccCccccceeeee-eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          330 FSSVRRDRNDFWEGIKA-HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       330 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                                ....... +...|.++.|.                 ++++|++|+.||+|++||++
T Consensus       260 ----------~~~~~~~~~~~~v~~~~~~-----------------~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         260 ----------PIIIKGAHAMSSVNSVIWL-----------------NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ----------CEEETTSSTTSCEEEEEEE-----------------ETTEEEEEETTSCEEEEECC
T ss_pred             ----------eEEEecCCCCCcEEEEEEC-----------------CCCEEEEEeCCCEEEEEecc
Confidence                      1122223 44567777664                 57799999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-41  Score=285.10  Aligned_cols=259  Identities=15%  Similarity=0.219  Sum_probs=215.4

Q ss_pred             CceEEEEeccCCee---EeEE---EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEE
Q psy988            2 DKTVRLWHISRKEC---LCCF---QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANF   75 (408)
Q Consensus         2 Dg~i~vwd~~~~~~---~~~~---~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~   75 (408)
                      ||.|+|||+.++..   +...   +|.+.|.+++|+| ++++|++|+.||.|++||+..........+..|...+..+.|
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  149 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeeccccccccccccccccccccccccccccccccc
Confidence            78999999976532   2222   3899999999999 999999999999999999987766655778899999999999


Q ss_pred             ecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee
Q psy988           76 CENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus        76 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  155 (408)
                      +|++.++++++.|+.+++|++.+.+.....        ..|...+.+++|++++..+++++.|+.+++||+++++.+..+
T Consensus       150 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~--------~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~  221 (337)
T d1gxra_         150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF--------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH  221 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccceeeccc
Confidence            999999999999999999999987654332        245578999999999999999999999999999998876655


Q ss_pred             cCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecC
Q psy988          156 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQME  235 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  235 (408)
                      ..   ...+.+++|+|++++|++++.|+.+++||++.....             ...                       
T Consensus       222 ~~---~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~-----------------------  262 (337)
T d1gxra_         222 DF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-------------QLH-----------------------  262 (337)
T ss_dssp             EC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-------------EEC-----------------------
T ss_pred             cc---ccceEEEEEcccccccceeccccccccccccccccc-------------ccc-----------------------
Confidence            42   345888999999999999999999999998653211             111                       


Q ss_pred             CCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCC
Q psy988          236 PDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  315 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  315 (408)
                                  .|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..   ...|.+++|+|++++|++|+.|
T Consensus       263 ------------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         263 ------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             ------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETT
T ss_pred             ------------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---CCCEEEEEEeCCCCEEEEEeCC
Confidence                        3445566667777788889999999999999999988877653   3478999999999999999999


Q ss_pred             ceEEEeec
Q psy988          316 QCIYIWKT  323 (408)
Q Consensus       316 g~i~iw~~  323 (408)
                      |.|+|||+
T Consensus       328 ~~I~vWdl  335 (337)
T d1gxra_         328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-39  Score=278.59  Aligned_cols=274  Identities=19%  Similarity=0.324  Sum_probs=214.8

Q ss_pred             CceEEEEeccCCeeEeEE-------------------EeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee
Q psy988            2 DKTVRLWHISRKECLCCF-------------------QHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE   62 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~-------------------~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~   62 (408)
                      |++|+|||+.+++.+..+                   .|...|++++|+| ++++|++|+.||.|++|+...++..  ..
T Consensus        82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~--~~  158 (388)
T d1erja_          82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIV--MI  158 (388)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE--EE
T ss_pred             CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcceecccccccccccccccccc--cc
Confidence            889999999998877655                   2667799999999 9999999999999999999988766  67


Q ss_pred             ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeC-CCCCeEEEeeCCCeE
Q psy988           63 VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPM-PGEDKILVTSNDSRI  141 (408)
Q Consensus        63 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i  141 (408)
                      ..+|...|.++.|++++..+++++.++.+++||..+.........        + ....++.+. +++++|++++.|+.|
T Consensus       159 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~l~~~~~d~~i  229 (388)
T d1erja_         159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--------E-DGVTTVAVSPGDGKYIAAGSLDRAV  229 (388)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--------S-SCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccceeeeeeecccccccccccc--------c-cccccccccCCCCCeEEEEcCCCeE
Confidence            889999999999999999999999999999999998765443321        1 234445554 578899999999999


Q ss_pred             EEEEccCcccceeecCc-----cccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          142 RLYDLRDLNLSCKYKGY-----VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      ++||.+++.....+...     .+...+.+++|+|++++|++++.||.|++||+...............           
T Consensus       230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------  298 (388)
T d1erja_         230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG-----------  298 (388)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------
T ss_pred             EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc-----------
Confidence            99999988776655322     12345889999999999999999999999999764322211110000           


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceec
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS  296 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  296 (408)
                                              ........|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|..  .
T Consensus       299 ------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~  352 (388)
T d1erja_         299 ------------------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--S  352 (388)
T ss_dssp             ------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--C
T ss_pred             ------------------------ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--C
Confidence                                    01112234566777888888888899999999999999999999999998866  6


Q ss_pred             eeEEE------EcCCCCEEEEecCCceEEEeecc
Q psy988          297 QIKAS------FSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       297 v~~~~------~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      |.+++      |+|++++||+|+.||+|+||+++
T Consensus       353 V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            67765      57899999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-39  Score=272.43  Aligned_cols=304  Identities=17%  Similarity=0.188  Sum_probs=227.3

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|+|||+.+++++..+. |.+.|++++|+| + .+|++|+.||+|++|+..............+........+.+++
T Consensus        31 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (355)
T d1nexb2          31 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI  108 (355)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-C-CEEEEEeccccccccccccccccccccccccccccccccccccc
Confidence            38999999999999999998 999999999998 5 58999999999999999988776545555566667778888999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccc---------------cccCCCCeEEEeeCCCCCeEEEeeCCCeEEEE
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG---------------KNATGRKISGIEPMPGEDKILVTSNDSRIRLY  144 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  144 (408)
                      .++++++.|+.|++|++.+..............               ...+...+.  .+.++++.++++..|+.|++|
T Consensus       109 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEE
T ss_pred             ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeee
Confidence            999999999999999998765432221110000               011122222  344568899999999999999


Q ss_pred             EccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  224 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  224 (408)
                      |+++++.+.....+...  +.++.++|+++++++++.|+.|++||.+++.            .+..+.+|...|.++.++
T Consensus       187 d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~~~~h~~~v~~~~~~  252 (355)
T d1nexb2         187 DVAQMKCLYILSGHTDR--IYSTIYDHERKRCISASMDTTIRIWDLENGE------------LMYTLQGHTALVGLLRLS  252 (355)
T ss_dssp             ETTTTEEEEEECCCSSC--EEEEEEETTTTEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCCCEEEEC
T ss_pred             ecccccceeeeeccccc--cccccccccceeeecccccceEEeeeccccc------------cccccccccccccccccc
Confidence            99998887777665543  6688999999999999999999999987542            223344555555555443


Q ss_pred             CCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE-EEEc
Q psy988          225 PCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK-ASFS  303 (408)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~s  303 (408)
                                                           +++|++++.||.|++||++++....  ..|..  .+.. ..++
T Consensus       253 -------------------------------------~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~--~~~~~~~~~  291 (355)
T d1nexb2         253 -------------------------------------DKFLVSAAADGSIRGWDANDYSRKF--SYHHT--NLSAITTFY  291 (355)
T ss_dssp             -------------------------------------SSEEEEECTTSEEEEEETTTCCEEE--EEECT--TCCCCCEEE
T ss_pred             -------------------------------------cceeeeeecccccccccccccceec--ccccC--CceEEEEEc
Confidence                                                 3468999999999999999876543  33333  2333 3567


Q ss_pred             CCCCEEEEecCCceEEEeeccccCccccccccCccccc-eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE
Q psy988          304 HDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFW-EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA  382 (408)
Q Consensus       304 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  382 (408)
                      +++++|++|+ ||.|++||++++            +++ ..+.+|.++|.+++|+|                + .+++++
T Consensus       292 ~~~~~l~~g~-d~~i~vwd~~tg------------~~~~~~~~~~~~~V~~v~~~~----------------~-~~~~~~  341 (355)
T d1nexb2         292 VSDNILVSGS-ENQFNIYNLRSG------------KLVHANILKDADQIWSVNFKG----------------K-TLVAAV  341 (355)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTC------------CBCCSCTTTTCSEEEEEEEET----------------T-EEEEEE
T ss_pred             CCCCEEEEEe-CCEEEEEECCCC------------CEEEEEecCCCCCEEEEEEcC----------------C-eEEEEE
Confidence            7888777765 899999999987            333 34567999999999998                6 478889


Q ss_pred             ecCCeEEEEeC
Q psy988          383 DFNGVIRVFLN  393 (408)
Q Consensus       383 ~~dg~v~iw~~  393 (408)
                      +.||.++||.+
T Consensus       342 s~dg~~~l~~~  352 (355)
T d1nexb2         342 EKDGQSFLEIL  352 (355)
T ss_dssp             ESSSCEEEEEE
T ss_pred             ECCCcEEEEEE
Confidence            99999777643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-39  Score=271.09  Aligned_cols=295  Identities=12%  Similarity=0.115  Sum_probs=218.7

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCC-cEEEEecCCCCceeeeeecCC-ceeeEEEEEec--CCCEEEEEecCCEEEEEeccC
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDG-KLRLWNIPDKKVAVWNEVEGQ-TKLITAANFCE--NGKFAVVGSYDGRCIFYTTDQ   98 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~   98 (408)
                      +.+++++|+| +++.|+.++.+. .|+.|+...........+.+| ...|++++|+|  ++.+|++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEET-TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            4578899999 889998886543 356677655554444677777 46899999998  578999999999999999987


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC--CCeEEEEEccCcccceeecCccccccceEEEEecCCCE-
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN--DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY-  175 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (408)
                      .+...............+.++|.+++|+++++++++++.  ++.+++|+.++++.+..+.+|...  +.+++|+|++.+ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~  174 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR--INACHLKQSRPMR  174 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSC--EEEEEECSSSSCE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccc--cccccccccccce
Confidence            655444333332223456678999999999999988754  678999999999988888876654  788999998876 


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      +++++.|+.+++||.........         ......+.                                   ..|.+
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~~~---------~~~~~~~~-----------------------------------~~v~~  210 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFSAS---------DRTHHKQG-----------------------------------SFVRD  210 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEE---------ECSSSCTT-----------------------------------CCEEE
T ss_pred             EEEeeccccccccccccccccee---------cccccCCC-----------------------------------CccEE
Confidence            67788999999999865432211         11122333                                   34455


Q ss_pred             eccCCC-CCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc---CCCCEEEEecCCceEEEeeccccCcccc
Q psy988          256 IEPMPG-EDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS---HDGKYIVSGSENQCIYIWKTHHDYAKFS  331 (408)
Q Consensus       256 ~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~~~~~  331 (408)
                      ++|+|+ +.+|++++.|+.|++||+++++.+..+.+|..  .+..+.|+   |+|++|++++.|+.|+|||+.++     
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-----  283 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-----  283 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-----
T ss_pred             eeeccccceeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-----
Confidence            555554 46688999999999999999999999887765  33344444   68999999999999999999886     


Q ss_pred             ccccCccccceeeeeecc--ceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          332 SVRRDRNDFWEGIKAHNA--VVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       332 ~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                             +++..+..|..  .+..+++.+.               .+.+|++++.||.|++||+
T Consensus       284 -------~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         284 -------KCVQKWTLDKQQLGNQQVGVVAT---------------GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -------EEEEEEECCTTCGGGCEEEEEEE---------------ETTEEEEEETTSCEEEEET
T ss_pred             -------CEEEEEEecCCcccCeEEEEEEC---------------CCCEEEEEECCCEEEEEEC
Confidence                   55666655543  3444555441               2358899999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-38  Score=262.37  Aligned_cols=260  Identities=18%  Similarity=0.343  Sum_probs=221.3

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|+|||+.+++++..+. |.+.|.+++|+| ++.++++++.++.+.+|+....+..  ..+..|...+.++.|+|++
T Consensus        37 ~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  113 (317)
T d1vyhc1          37 EDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNG  113 (317)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSS
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec-ccccccccccccccccccccccccc--cccccccccceeeeccCCC
Confidence            38999999999999999998 999999999999 9999999999999999998887765  6778899999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      +.+++++.|+.+++||+++++....+.        .|...+.+++|+|++.+|++++.|+.|++|++.+++....+..+.
T Consensus       114 ~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~  185 (317)
T d1vyhc1         114 DHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR  185 (317)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             ceEEeeccCcceeEeecccceeeeEEc--------cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCC
Confidence            999999999999999999887654432        345689999999999999999999999999999988887777655


Q ss_pred             ccccceEEEEecC--------------------CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          160 NVSSQIKASFSHD--------------------GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       160 ~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      ..  +.++.++|+                    +.++++++.|+.|++||++++..            +..+.+|.    
T Consensus       186 ~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------------~~~~~~~~----  247 (317)
T d1vyhc1         186 HV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC------------LMTLVGHD----  247 (317)
T ss_dssp             SC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE------------EEEEECCS----
T ss_pred             CC--ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE------------EEEEeCCC----
Confidence            43  555666554                    45789999999999999875432            22233344    


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                                                     ..|.+++++|++++|++++.||.|++||+++++++..+.+|..  .|++
T Consensus       248 -------------------------------~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~  294 (317)
T d1vyhc1         248 -------------------------------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS  294 (317)
T ss_dssp             -------------------------------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred             -------------------------------CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEE
Confidence                                           4455555566677789999999999999999999999998765  8999


Q ss_pred             EEEcCCCCEEEEecCCceEEEee
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWK  322 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~  322 (408)
                      ++|+|++++|++|+.||.|+|||
T Consensus       295 ~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=260.80  Aligned_cols=322  Identities=16%  Similarity=0.265  Sum_probs=241.8

Q ss_pred             EeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe
Q psy988            8 WHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS   86 (408)
Q Consensus         8 wd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   86 (408)
                      |+..+.++.+.++ |.+.|.+ ++++ +|++||||+.||+|+|||+.+++..  ..+.+|...|.+++|+|+  +|++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEE--EEEeCCCCCEEEEEeCCC--ccccce
Confidence            6666777777776 9999876 4677 7899999999999999999998876  789999999999999874  899999


Q ss_pred             cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceE
Q psy988           87 YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  166 (408)
Q Consensus        87 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  166 (408)
                      .|+.+++|+...........        .....+.....  ....+..+..|+.+.+|+..+++....+......    .
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----~  140 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLY--------GHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA----V  140 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC----E
T ss_pred             ecccccccccccccceeccc--------ccceeEeeeec--ccccccccccceeEEEeecccccceeeeeccccc----c
Confidence            99999999998876543322        11224444443  3567888889999999999988776655443322    2


Q ss_pred             EEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC-------C
Q psy988          167 ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-------S  239 (408)
Q Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~  239 (408)
                      ....+....+++++.|+.+++||......            ...+..|...+...  .+++..++++..+..       .
T Consensus       141 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~------------~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~  206 (342)
T d2ovrb2         141 RCVQYDGRRVVSGAYDFMVKVWDPETETC------------LHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVET  206 (342)
T ss_dssp             EEEEECSSCEEEEETTSCEEEEEGGGTEE------------EEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTT
T ss_pred             eeeccccceeeeecCCCeEEEeeccccee------------eEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeeccc
Confidence            34556677889999999999999865432            23344555554444  445666666543322       3


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc-eeceeEEEEcCCCCEEEEecCCceE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-VSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                      .........+...+.++.++  +++|++++.|+.|++||+...+....+..+.. ...+.++.+  +++++++|+.||.|
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i  282 (342)
T d2ovrb2         207 GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTV  282 (342)
T ss_dssp             CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEE
T ss_pred             ceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEE
Confidence            44455666777778777665  46999999999999999999888887776433 334454444  56799999999999


Q ss_pred             EEeeccccCccccccccCccccceee-----eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCe----EE
Q psy988          319 YIWKTHHDYAKFSSVRRDRNDFWEGI-----KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGV----IR  389 (408)
Q Consensus       319 ~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~----v~  389 (408)
                      ++||++++            +++..+     .+|...|++++|+|                ++.+||+|+.||+    |+
T Consensus       283 ~iwd~~tg------------~~i~~~~~~~~~~~~~~v~~v~~s~----------------~~~~la~g~~dGt~~~~l~  334 (342)
T d2ovrb2         283 KLWDLKTG------------EFIRNLVTLESGGSGGVVWRIRASN----------------TKLVCAVGSRNGTEETKLL  334 (342)
T ss_dssp             EEEETTTC------------CEEEEEEECTTGGGTCEEEEEEECS----------------SEEEEEEECSSSSSCCEEE
T ss_pred             EEEECCCC------------CEEEEEecccCCCCCCCEEEEEECC----------------CCCEEEEEeCCCCCeeEEE
Confidence            99999987            344433     35778899999999                9999999999985    99


Q ss_pred             EEeCCC
Q psy988          390 VFLNKT  395 (408)
Q Consensus       390 iw~~~~  395 (408)
                      +||+..
T Consensus       335 ~~Df~~  340 (342)
T d2ovrb2         335 VLDFDV  340 (342)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            999874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-37  Score=265.93  Aligned_cols=215  Identities=13%  Similarity=0.120  Sum_probs=174.1

Q ss_pred             CceEEEEeccCCe--eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKE--CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~--~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~   78 (408)
                      ||.|+|||..+++  ++..+. |.++|++++|+| ++++|++|+.|++|+|||+.++.......+.+|...|.+++|+|+
T Consensus        28 ~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~  106 (371)
T d1k8kc_          28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  106 (371)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccc
Confidence            7899999998886  455555 999999999999 999999999999999999998876655677889999999999999


Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccce-----
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSC-----  153 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----  153 (408)
                      +++|++++.|+.+++|+++...........    ...|...|.+++|+|++.+|++++.|+.|++||+.......     
T Consensus       107 ~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~  182 (371)
T d1k8kc_         107 EKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT  182 (371)
T ss_dssp             SSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred             cccceeecccCcceeeeeeccccccccccc----ccccccccccccccccccceeccccCcEEEEEeeccCccccccccc
Confidence            999999999999999998876543332211    23456789999999999999999999999999986543211     


Q ss_pred             -----------eecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEE
Q psy988          154 -----------KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV  222 (408)
Q Consensus       154 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  222 (408)
                                 ......+...+.+++|+|++++|++++.|+.|++||+..+            ..+..+..|..+|.+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~v~s~~  250 (371)
T d1k8kc_         183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------------MAVATLASETLPLLAVT  250 (371)
T ss_dssp             TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT------------TEEEEEECSSCCEEEEE
T ss_pred             cccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc------------cceeeeecccccceeee
Confidence                       1122233445788999999999999999999999999654            33455667788888899


Q ss_pred             EeCCcceeeee
Q psy988          223 FAPCPELIIAQ  233 (408)
Q Consensus       223 ~~~~~~~~~~~  233 (408)
                      |+|+++.++.+
T Consensus       251 fs~d~~~la~g  261 (371)
T d1k8kc_         251 FITESSLVAAG  261 (371)
T ss_dssp             EEETTEEEEEE
T ss_pred             ecCCCCEEEEE
Confidence            98888776554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-37  Score=258.63  Aligned_cols=288  Identities=17%  Similarity=0.224  Sum_probs=212.7

Q ss_pred             EEeCCce-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEecc
Q psy988           19 FQHIDFV-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTD   97 (408)
Q Consensus        19 ~~h~~~v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~   97 (408)
                      -+|.+.| +|++|   ++++||||+.||+|+|||+.+++..  ..+.+|.+.|.+++|+|+ .+|++++.|+.|++|+..
T Consensus         9 ~GH~~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           9 RGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             ECCSSSCEEEEEE---ETTEEEEEETTTEEEEEETTTTEEE--EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             CCcCCCcEEEEEE---CCCEEEEEeCCCeEEEEECCCCcEE--EEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            3498886 55554   6789999999999999999998766  789999999999999985 589999999999999999


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc----------c-------
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV----------N-------  160 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~-------  160 (408)
                      ..+.......      ..+........+.+++..+++++.|+.|++||+++...........          .       
T Consensus        83 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          83 KGCCTHVFEG------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             TTEEEEEECC------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             cccccccccc------ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            8765443321      1122345667778899999999999999999998765432211100          0       


Q ss_pred             --cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC
Q psy988          161 --VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK  238 (408)
Q Consensus       161 --~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  238 (408)
                        ........+.+++++++++..|+.+++||+.++...            .....+.                       
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------------~~~~~~~-----------------------  201 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------------YILSGHT-----------------------  201 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------------EEECCCS-----------------------
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccce------------eeeeccc-----------------------
Confidence              000112346678899999999999999998754322            1222233                       


Q ss_pred             CCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE
Q psy988          239 SESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                                  ..+.++.++|++.++++++.|+.|++||++++..+..+.+|..  .+.+++++  +++|++|+.||.|
T Consensus       202 ------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~~~~~dg~i  265 (355)
T d1nexb2         202 ------------DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSI  265 (355)
T ss_dssp             ------------SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CCCEEEEC--SSEEEEECTTSEE
T ss_pred             ------------cccccccccccceeeecccccceEEeeeccccccccccccccc--cccccccc--cceeeeeeccccc
Confidence                        3344555566677788999999999999999999999988766  67888886  4799999999999


Q ss_pred             EEeeccccCccccccccCccccceeeeeeccceEEEE-ecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCC
Q psy988          319 YIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAV-FAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKP  397 (408)
Q Consensus       319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  397 (408)
                      ++||+++.              ...+..|...+.++. +++                ++++|++| .||.|++||+++++
T Consensus       266 ~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~----------------~~~~l~~g-~d~~i~vwd~~tg~  314 (355)
T d1nexb2         266 RGWDANDY--------------SRKFSYHHTNLSAITTFYV----------------SDNILVSG-SENQFNIYNLRSGK  314 (355)
T ss_dssp             EEEETTTC--------------CEEEEEECTTCCCCCEEEE----------------CSSEEEEE-ETTEEEEEETTTCC
T ss_pred             cccccccc--------------ceecccccCCceEEEEEcC----------------CCCEEEEE-eCCEEEEEECCCCC
Confidence            99999864              234566777777665 455                67776665 59999999999988


Q ss_pred             Ccc
Q psy988          398 KHS  400 (408)
Q Consensus       398 ~~~  400 (408)
                      ...
T Consensus       315 ~~~  317 (355)
T d1nexb2         315 LVH  317 (355)
T ss_dssp             BCC
T ss_pred             EEE
Confidence            654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-35  Score=248.16  Aligned_cols=263  Identities=16%  Similarity=0.269  Sum_probs=216.8

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEec
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCE   77 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~   77 (408)
                      .||+|+|||+.+++.+..+. |...|.+++|+| ++.++++|+.|+.+++|+......  .....+.+|.......... 
T Consensus        75 ~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (340)
T d1tbga_          75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-  152 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-
T ss_pred             CCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccccccccccceecccccccccccccc-
Confidence            48999999999999999988 999999999999 999999999999999999876542  2234567777666655554 


Q ss_pred             CCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC
Q psy988           78 NGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG  157 (408)
Q Consensus        78 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  157 (408)
                      .+..+.....+.....+............        .+...+....+.+.+..+++++.|+.|++||+++++.+..+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         153 DDNQIVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccc--------ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence            45567788889999999887765443332        2335788899999999999999999999999999999888887


Q ss_pred             ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          158 YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      |...  +.+++|+|++++|++++.||.|++||+........          ..                           
T Consensus       225 h~~~--i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~----------~~---------------------------  265 (340)
T d1tbga_         225 HESD--INAICFFPNGNAFATGSDDATCRLFDLRADQELMT----------YS---------------------------  265 (340)
T ss_dssp             CSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------EC---------------------------
T ss_pred             CCCC--eEEEEECCCCCEEEEEeCCCeEEEEeecccccccc----------cc---------------------------
Confidence            6654  88999999999999999999999999865432211          00                           


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCce
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQC  317 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  317 (408)
                              ...+...+.+++|+|++++|++|+.||.|++||+.+++++..+.+|..  .|.+++|+|++++|++|+.||.
T Consensus       266 --------~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         266 --------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             --------CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred             --------cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCCE
Confidence                    112344566777777888899999999999999999999999998866  8999999999999999999999


Q ss_pred             EEEee
Q psy988          318 IYIWK  322 (408)
Q Consensus       318 i~iw~  322 (408)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-36  Score=245.41  Aligned_cols=279  Identities=18%  Similarity=0.247  Sum_probs=209.9

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCe
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLK  100 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  100 (408)
                      |...|+|++|   ++++||||+.||+|+|||+.+++..  ..+.+|...|++++|  ++++|++|+.|+.|++|++....
T Consensus        14 ~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~--~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          14 TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             SCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             CCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEE--EEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            7888998764   7889999999999999999998876  789999999999887  67899999999999999999876


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC-ccccccceEEEEecCCCEEEEe
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG-YVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      ........          ......+.+....++++..++.+.+|+............ ..+...+..  ..+....++++
T Consensus        87 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~  154 (293)
T d1p22a2          87 MLNTLIHH----------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV--VDFDDKYIVSA  154 (293)
T ss_dssp             EEEEECCC----------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE--EEEETTEEEEE
T ss_pred             cccccccc----------ccccccccccccceeecccccceeEeecccccccccccccccccccccc--ceecccccccc
Confidence            54433211          222334455677899999999999999987654333221 112222333  34456678899


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      +.|+.+++||.++...            +..+.++...+..+.++                                   
T Consensus       155 s~d~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~~-----------------------------------  187 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEF------------VRTLNGHKRGIACLQYR-----------------------------------  187 (293)
T ss_dssp             ETTSEEEEEETTTCCE------------EEEEECCSSCEEEEEEE-----------------------------------
T ss_pred             cCCCceeeecCCCCcE------------EEEEcccccccccccCC-----------------------------------
Confidence            9999999999975422            23344444444444433                                   


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccc
Q psy988          260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRND  339 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  339 (408)
                        +.++++++.|+.|++||+++.+.+..+.++..  .+.  .+++++.+|++|+.||.|++||+........   .....
T Consensus       188 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---~~~~~  258 (293)
T d1p22a2         188 --DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRA---PAGTL  258 (293)
T ss_dssp             --TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTS---CTTTT
T ss_pred             --CCeEEEecCCCEEEEEecccceeeeeecccce--eee--eccccceEEEEEcCCCEEEEEECCCCccccc---cCCce
Confidence              45688999999999999999999888877654  343  5677899999999999999999876533221   11224


Q ss_pred             cceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEe
Q psy988          340 FWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFL  392 (408)
Q Consensus       340 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~  392 (408)
                      .+..+.+|.+.|++++|++                  ++|+||+.||+|++||
T Consensus       259 ~~~~~~~H~~~V~~v~~d~------------------~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         259 CLRTLVEHSGRVFRLQFDE------------------FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEECCCSSCCCCEEECS------------------SCEEECCSSSEEEEEC
T ss_pred             eeEEecCCCCCEEEEEEcC------------------CEEEEEecCCEEEEeC
Confidence            5677889999999999954                  5799999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-36  Score=248.24  Aligned_cols=254  Identities=16%  Similarity=0.229  Sum_probs=194.3

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      +.+.+|...|++++|+|++++|++|+.||+|++||+++++.....       ...|...|.+++|+|++. +++++.|+.
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-------~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------PDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------SCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-------cCCCCCcEEEEEeeccce-eecccceee
Confidence            789999999999999999999999999999999999887643221       234667999999999885 566778999


Q ss_pred             EEEEEccCccccee-ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          141 IRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       141 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +++|+......... .........+..++++++++.+++++ ++.+++|+.......                       
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~-----------------------  133 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV-----------------------  133 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEE-----------------------
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccccccc-----------------------
Confidence            99999875432211 11112234467889999998777664 568999985321100                       


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                                                  .....+.+++++|+++++++++.|+.|++||+++++...... ..+...|.+
T Consensus       134 ----------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~  184 (299)
T d1nr0a2         134 ----------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS  184 (299)
T ss_dssp             ----------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred             ----------------------------cccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence                                        111234556677788888999999999999998877544322 223347899


Q ss_pred             EEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEE
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL  379 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l  379 (408)
                      ++|+|++++|++++.|+.|++||+.++...         .....+.+|...|++++|+|                ++++|
T Consensus       185 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---------~~~~~~~~h~~~v~~l~~s~----------------~~~~l  239 (299)
T d1nr0a2         185 VAFSNNGAFLVATDQSRKVIPYSVANNFEL---------AHTNSWTFHTAKVACVSWSP----------------DNVRL  239 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGGTTEE---------SCCCCCCCCSSCEEEEEECT----------------TSSEE
T ss_pred             cccccccccccccccccccccccccccccc---------cccccccccccccccccccc----------------cccce
Confidence            999999999999999999999999875322         23445678999999999999                99999


Q ss_pred             EEEecCCeEEEEeCCCCCCcc
Q psy988          380 VSADFNGVIRVFLNKTKPKHS  400 (408)
Q Consensus       380 ~s~~~dg~v~iw~~~~~~~~~  400 (408)
                      ++|+.||.|++||+.+++...
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCC
T ss_pred             EEEcCCCEEEEEECCCCCcce
Confidence            999999999999998876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-36  Score=250.56  Aligned_cols=271  Identities=18%  Similarity=0.214  Sum_probs=209.3

Q ss_pred             CeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEE
Q psy988           13 KECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRC   91 (408)
Q Consensus        13 ~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   91 (408)
                      .++++++. |.++|++++|+|     |+||+.||+|++||+.++       ...|...|.++.+++++ .+++++.|+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ-EYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC-eEEEEeecccc
Confidence            46778887 999999999987     999999999999997643       35789999999998765 57999999999


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      ++|++...+               ....+..+.+.+++..+++ +.++.+.+|+..+++....+.....     ..++++
T Consensus        70 ~~w~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  128 (287)
T d1pgua2          70 KVNGITKHE---------------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSP-----GSAVSL  128 (287)
T ss_dssp             EETTEEEEE---------------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSC-----EEEEEE
T ss_pred             ccccccccc---------------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccce-----eeeeec
Confidence            999976432               1235677888887765555 4566799999998887776654322     356788


Q ss_pred             CCCEEEEeecCc-eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          172 DGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       172 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      +++.+++++.++ .+++|++........           ...                                   .+.
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~-----------~~~-----------------------------------~~~  162 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFD-----------LKT-----------------------------------PLR  162 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEE-----------CSS-----------------------------------CCS
T ss_pred             cCcceeeeccccceeeeeeccccceeee-----------eee-----------------------------------ccC
Confidence            888888888765 799999854321110           001                                   233


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE-EeeccceeceeEEEEcCC----------CCEEEEecCCceEE
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK-YKGYVNVSSQIKASFSHD----------GKYIVSGSENQCIY  319 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~  319 (408)
                      ..+++++|+|++.+|++++.||.|++||+.+++.... +..|..  .+.+++|+|+          +.+|++|+.|+.|+
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS--KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS--CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             CceeEEEeccCccccccccccccccceeeccccccccccccccc--ccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            4566677777788889999999999999998876543 344443  7889999874          46899999999999


Q ss_pred             EeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeC
Q psy988          320 IWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       320 iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      +|++....           +.+..+.+|.+.|++++|+|                ++ .|+|++.||.|++|++
T Consensus       241 iw~~~~~~-----------~~~~~~~~h~~~V~~v~~~~----------------~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         241 IYSVKRPM-----------KIIKALNAHKDGVNNLLWET----------------PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEESSCTT-----------CCEEETTSSTTCEEEEEEEE----------------TT-EEEEEETTSCEEEEEE
T ss_pred             EEECCCCC-----------eEEEEeCCCCCCeEEEEECC----------------CC-EEEEEECCCeEEEEEE
Confidence            99987642           45666778999999999999                76 5889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=255.11  Aligned_cols=316  Identities=11%  Similarity=0.095  Sum_probs=214.3

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCce----eeeeecCCceeeEEE------EEec-CCCEEEEEecCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA----VWNEVEGQTKLITAA------NFCE-NGKFAVVGSYDG   89 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~v~~~------~~~~-~~~~l~~~~~dg   89 (408)
                      |.+.|.++++++   ++++|++.|++|+|||..+.+..    .......|...+..+      ..+. ++.++++++.||
T Consensus        13 H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          13 HDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             SSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             ccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            999999999865   58999999999999998765421    111222333322222      2211 345678999999


Q ss_pred             EEEEEeccCCeeeEEEEEe--eccccccCCCCeEEEeeCCC-----CCeEEEeeCCCeEEEEEccCcccce---------
Q psy988           90 RCIFYTTDQLKYHTQIHVR--STRGKNATGRKISGIEPMPG-----EDKILVTSNDSRIRLYDLRDLNLSC---------  153 (408)
Q Consensus        90 ~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~---------  153 (408)
                      .|++|++............  .......+...+..+++.++     +.++++++.||.+++|++.......         
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            9999998654432222111  11122233446777777665     4578899999999999985322100         


Q ss_pred             ------e-ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          154 ------K-YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       154 ------~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                            . .........+.+++|+|++ +|++|+.||.|++||+.++.......      ....+.              
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~------~~~~l~--------------  228 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE------SQHSMI--------------  228 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE------CCC-----------------
T ss_pred             ceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccc------cccccc--------------
Confidence                  0 0111222346789999997 89999999999999997654332110      111222              


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCC---eEEEEEcCCCeeeeEEeec-----------c
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDS---RIRLYDLRDLNLSCKYKGY-----------V  292 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~-----------~  292 (408)
                                           .|...|.+++|+|++++|++|+.|+   .|++||+++++.+..+...           .
T Consensus       229 ---------------------~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~g  287 (393)
T d1sq9a_         229 ---------------------NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  287 (393)
T ss_dssp             ---------------------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             ---------------------cccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeec
Confidence                                 4455566666666777789998886   4999999999888777521           1


Q ss_pred             ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceE----EEEecCCchhhhhccC
Q psy988          293 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT----CAVFAPCPELIIAQME  368 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~~~~~~~  368 (408)
                      +...|++++|+||+++|++|+.|++|++||+.++            +++..+.+|.+.|.    .++|+|++..++....
T Consensus       288 H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g------------~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             ccCceeeeccCCCCCeeEEECCCCEEEEEECCCC------------CEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence            2347999999999999999999999999999987            68888999988776    4788888776654321


Q ss_pred             CC-----------CCCCcccEEEEEecCCeEEEEeC
Q psy988          369 PD-----------KSESTGYVLVSADFNGVIRVFLN  393 (408)
Q Consensus       369 ~~-----------~~s~~~~~l~s~~~dg~v~iw~~  393 (408)
                      ..           ........|++++.|+.||+|..
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         356 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            11           11223456889999999999973

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.3e-35  Score=250.72  Aligned_cols=312  Identities=12%  Similarity=0.003  Sum_probs=225.1

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCC--cEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDG--KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      +|.|++||+++++.++ +.|...|.+++|+| |+++|++++.+.  .|++||.++++..   .+..|...|.+++|+|+|
T Consensus        23 ~g~v~v~d~~~~~~~~-~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~~~~~~v~~~~~spdg   97 (360)
T d1k32a3          23 RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAE---KFEENLGNVFAMGVDRNG   97 (360)
T ss_dssp             TTEEEEECTTSSBEEE-CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEE---ECCCCCCSEEEEEECTTS
T ss_pred             CCeEEEEECCCCcEEE-ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEE---EeeCCCceEEeeeecccc
Confidence            5789999999887766 46999999999999 999998877653  7999999988764   677899999999999999


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee----------CCCeEEEEEccCc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDL  149 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~  149 (408)
                      ++|++++.++.+++|++.+.+......        .+...+.+++|+|++++|+.+.          .++.+++||+.++
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGKPTVIER--------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             cccceeccccccccccccccceeeeee--------cccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            999999999999999999887654432        2345788999999999998653          3456999999987


Q ss_pred             ccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          150 NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      +........   ..+..++|+|+|++|++++.++.+.+|+.......               ......+..+.+.     
T Consensus       170 ~~~~~~~~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~-----  226 (360)
T d1k32a3         170 KIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS---------------FEVVSKPFVIPLI-----  226 (360)
T ss_dssp             EEEECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE---------------CCSCBEEEEEESS-----
T ss_pred             ceeeecccc---cccccccccCCCCEEEEEeCCCceEccccccccee---------------eccccceEEEecc-----
Confidence            655443322   23567899999999999999999999987542111               0111122222222     


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCC-----CeEEEEEcCCCeeeeEEeeccceeceeEEEE--
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSND-----SRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--  302 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--  302 (408)
                                          ...+..+.+++++..++++..+     ..+..++...+... .+..+..  .+..+.+  
T Consensus       227 --------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~  283 (360)
T d1k32a3         227 --------------------PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLES--SILIYSVPV  283 (360)
T ss_dssp             --------------------TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSS--EEEEEECCC
T ss_pred             --------------------cCccccceECCCcCcccccceeecccccceeecccCcCcee-EeeecCC--CceEEEEEe
Confidence                                2233345556655555544332     22444444444432 2222222  2233344  


Q ss_pred             -cCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEE
Q psy988          303 -SHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVS  381 (408)
Q Consensus       303 -s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  381 (408)
                       ++++.++++++.++.|++||+.++            +    ...|.+.|.+++|+|                ||++|++
T Consensus       284 ~~~~~~~~~~~~~~~~i~~~d~~~~------------~----~~~~~~~v~~~~~Sp----------------DG~~l~~  331 (360)
T d1k32a3         284 HGEFAAYYQGAPEKGVLLKYDVKTR------------K----VTEVKNNLTDLRLSA----------------DRKTVMV  331 (360)
T ss_dssp             CCSHHHHHHCCCCCEEEEEEETTTC------------C----EEEEEEEEEEEEECT----------------TSCEEEE
T ss_pred             cCCCeeEEEecCCCCEEEEEECCCC------------e----EEEecCCcCEEEECC----------------CCCEEEE
Confidence             344457888999999999998874            1    234566799999999                9999999


Q ss_pred             EecCCeEEEEeCCCCCCcccccc
Q psy988          382 ADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       382 ~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                      ++.||.|++|+++.++...++.+
T Consensus       332 ~~~Dg~i~v~d~~~~~~~~~~~~  354 (360)
T d1k32a3         332 RKDDGKIYTFPLEKPEDERTVET  354 (360)
T ss_dssp             EETTSCEEEEESSCTTSCEECCC
T ss_pred             EECCCeEEEEECCCCCcceEEEe
Confidence            99999999999999988776643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-35  Score=243.07  Aligned_cols=267  Identities=17%  Similarity=0.218  Sum_probs=197.4

Q ss_pred             EEEEeccCCe--eEeEEE-e-CCceEEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCcee------eeeecCCceeeEEE
Q psy988            5 VRLWHISRKE--CLCCFQ-H-IDFVTAICFHPR-DDRYFLSGSLDGKLRLWNIPDKKVAV------WNEVEGQTKLITAA   73 (408)
Q Consensus         5 i~vwd~~~~~--~~~~~~-h-~~~v~~~~~sp~-~~~~l~t~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~v~~~   73 (408)
                      |+.|+....+  ....+. | ...|++++|+|. ++++|++|+.||+|+|||+..++...      ...+..|.++|.++
T Consensus        42 i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  121 (325)
T d1pgua1          42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI  121 (325)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE
T ss_pred             EEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEE
Confidence            4556554332  233443 5 568999999983 56899999999999999997654321      12345688899999


Q ss_pred             EEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEeeCCCeEEEEEccCcc
Q psy988           74 NFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVTSNDSRIRLYDLRDLN  150 (408)
Q Consensus        74 ~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~  150 (408)
                      +|+++++++++++.  ++.+.+|+.++++....+        ..|...|.+++|+|+++. +++++.|+.+++||++..+
T Consensus       122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC--------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             EECCCCCccceeeccccceEEEEeecccccceee--------eecccccccccccccccceEEEeecccccccccccccc
Confidence            99999999988765  678999999877643332        246679999999998876 6678899999999998877


Q ss_pred             cceeecCc-cccccceEEEEecC-CCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          151 LSCKYKGY-VNVSSQIKASFSHD-GKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       151 ~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                      .......+ .....+.+++|+|+ +.+|++++.|+.|++||++++.            .+..+..|...+..+.|+    
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~------------~~~~l~~~~~~v~~~~~s----  257 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------------FLKYIEDDQEPVQGGIFA----  257 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------------EEEECCBTTBCCCSCEEE----
T ss_pred             cceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc------------ccccccccccccccceee----
Confidence            66655443 33455889999996 6889999999999999986542            223344444443333222    


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCC-CC
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHD-GK  307 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~  307 (408)
                                                 +.+ |++++|++++.|+.|+|||+++++++..+..+.+...+..+++.+. +.
T Consensus       258 ---------------------------~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (325)
T d1pgua1         258 ---------------------------LSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG  309 (325)
T ss_dssp             ---------------------------EEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred             ---------------------------eec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC
Confidence                                       111 4677889999999999999999999999887766545555555443 34


Q ss_pred             EEEEecCCceEEEeec
Q psy988          308 YIVSGSENQCIYIWKT  323 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~  323 (408)
                      +|++++.||.|++||+
T Consensus       310 ~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         310 RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEECCCEEEEEEC
Confidence            7899999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=243.62  Aligned_cols=301  Identities=13%  Similarity=0.076  Sum_probs=211.9

Q ss_pred             eEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCce-eeeeecCCceeeEEEEEecC-CCEEEEEecCCEE
Q psy988           15 CLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVA-VWNEVEGQTKLITAANFCEN-GKFAVVGSYDGRC   91 (408)
Q Consensus        15 ~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i   91 (408)
                      .++..+ |++.|++|+|+| ++++||+|+.||+|+|||+..+... ......+|..+|.+++|+|+ +.+|++|+.||.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            344444 999999999999 9999999999999999999876542 22344469999999999987 4589999999999


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeec----CccccccceEE
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK----GYVNVSSQIKA  167 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~~  167 (408)
                      ++|+...........       ..+........+.++...+++++.++.+++||++.........    .+.........
T Consensus        82 ~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d1yfqa_          82 LKVDLIGSPSFQALT-------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             EEECSSSSSSEEECB-------SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred             eeeeccccccccccc-------ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeee
Confidence            999998766543322       1122234455566778899999999999999997655433322    22222234456


Q ss_pred             EEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeec
Q psy988          168 SFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLN  247 (408)
Q Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
                      .+.+.+..+++++.|+.|++||+........         ............+..                         
T Consensus       155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------------------------  200 (342)
T d1yfqa_         155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG---------TIEESGLKYQIRDVA-------------------------  200 (342)
T ss_dssp             EEEECSSEEEEEESTTEEEEEESSCCTTCCC---------EEEECSCSSCEEEEE-------------------------
T ss_pred             eeeccCCceeeecCCCcEEEEecccCcccce---------eeeecccccceeeeE-------------------------
Confidence            7788899999999999999999865321110         000111111222222                         


Q ss_pred             CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeee------eEEe-------eccceeceeEEEEcCCCCEEEEecC
Q psy988          248 ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS------CKYK-------GYVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                               .+..++..+++++.||.+.+|+.......      ..+.       ...+...+.+++|+|++++||+|+.
T Consensus       201 ---------~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~  271 (342)
T d1yfqa_         201 ---------LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS  271 (342)
T ss_dssp             ---------ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred             ---------eecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECC
Confidence                     22335566888999999999997653221      1111       1122336789999999999999999


Q ss_pred             CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCC
Q psy988          315 NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNK  394 (408)
Q Consensus       315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~  394 (408)
                      ||.|++||+.++            +.+..+..+ ..+..++|+|                ++++|++|+.|+.+++|...
T Consensus       272 Dg~v~vWD~~~~------------~~l~~~~~~-~~~~~~~~s~----------------~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         272 DGIISCWNLQTR------------KKIKNFAKF-NEDSVVKIAC----------------SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TSCEEEEETTTT------------EEEEECCCC-SSSEEEEEEE----------------CSSEEEEEEECTHHHHCSSS
T ss_pred             CCEEEEEECCCC------------cEEEEecCC-CCCEEEEEEe----------------CCCEEEEEEcCCcEEEeeee
Confidence            999999999886            445545432 3455678888                88899999999999998764


Q ss_pred             C
Q psy988          395 T  395 (408)
Q Consensus       395 ~  395 (408)
                      .
T Consensus       323 ~  323 (342)
T d1yfqa_         323 D  323 (342)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=7.4e-33  Score=239.17  Aligned_cols=352  Identities=14%  Similarity=0.072  Sum_probs=243.2

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee---ecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE---VEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~   78 (408)
                      ||+|.|||.++++++..+.....+..++||| ||+++++++.||.|++||+.+++......   ..+|.+.+.+..|+||
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            7899999999999999998556799999999 99999999999999999998876543222   3456677788889999


Q ss_pred             CCEE-EEEecCCEEEEEeccCCeeeEEEEEeecc---ccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccce
Q psy988           79 GKFA-VVGSYDGRCIFYTTDQLKYHTQIHVRSTR---GKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSC  153 (408)
Q Consensus        79 ~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~  153 (408)
                      |++| ++++.++.+++||..+++...........   ....+......+.++|++..++++ ..++.|.+||..+.+...
T Consensus       120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence            9986 67888999999999998876655432221   122344567889999999887655 567999999998776544


Q ss_pred             eecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeee
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIA  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  232 (408)
                      ....... ..+..++|+|+|+++++++. ++.+.++|..+............       ..+........+...+.....
T Consensus       200 ~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         200 TTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-------TPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             EEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-------SBCCTTCEEEEETTTEEEEEE
T ss_pred             EEEEccc-CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcc-------ccccCcccceecCCCCceecc
Confidence            3322222 23567999999998887765 45788888876544322111110       111111222222222222221


Q ss_pred             ecCCCCC----CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988          233 QMEPDKS----ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       233 ~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  308 (408)
                      .......    .........+...+....++|++..+++++.+...++|+..+...      +..  ....+++ ||++.
T Consensus       272 ~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~--~~~sv~v-pDg~~  342 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP------EAE--ISGSVAV-FDIKA  342 (432)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS------SHH--HHTCEEE-EEGGG
T ss_pred             cccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC------CCC--eeeEEEE-Eechh
Confidence            1100000    000011223456788889999999999999999999998765432      111  1223454 89999


Q ss_pred             EEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-----
Q psy988          309 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-----  383 (408)
Q Consensus       309 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----  383 (408)
                      |++++.|+.+++|++.+.               ..+..|...|.+++|+|                ||++|+.+.     
T Consensus       343 la~~s~d~~~k~w~~~~~---------------~~l~~~~~~v~~~~fS~----------------DG~~v~~S~~~~~~  391 (432)
T d1qksa2         343 MTGDGSDPEFKTLPIAEW---------------AGITEGQPRVVQGEFNK----------------DGTEVWFSVWNGKD  391 (432)
T ss_dssp             CCCSSSCCCEEEECHHHH---------------HTCCSSCCEEEEEEECT----------------TSSEEEEEEECCTT
T ss_pred             hcccccCCceEecccccc---------------cccCCCCCcEEEeEECC----------------CCCEEEEEEecCCC
Confidence            999999999999998653               22345777899999999                888775443     


Q ss_pred             cCCeEEEEeCCCCCCcccc
Q psy988          384 FNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       384 ~dg~v~iw~~~~~~~~~~~  402 (408)
                      .||.|+|||.++++....+
T Consensus       392 ~~g~i~i~D~~T~k~~~~i  410 (432)
T d1qksa2         392 QESALVVVDDKTLELKHVI  410 (432)
T ss_dssp             SCCEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEECCCceEEeEe
Confidence            4789999999999875544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-33  Score=237.33  Aligned_cols=294  Identities=17%  Similarity=0.156  Sum_probs=190.4

Q ss_pred             eeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE----EEEEeeccccccCCCCeEEEeeCC-CCCeEEEe
Q psy988           61 NEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT----QIHVRSTRGKNATGRKISGIEPMP-GEDKILVT  135 (408)
Q Consensus        61 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  135 (408)
                      ...++|...|.+++++  ++++++++.|++|++||..+.+...    ............|......+.... +...++++
T Consensus         8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            4568999999999986  4699999999999999976543210    000000000000001112222222 23456788


Q ss_pred             eCCCeEEEEEccCcccceeec--------CccccccceEEEEecC-----CCEEEEeecCceEEEeeeccceeeeeeccc
Q psy988          136 SNDSRIRLYDLRDLNLSCKYK--------GYVNVSSQIKASFSHD-----GKYIVSGSENQCIYIWKTHHDYAKFSSVRR  202 (408)
Q Consensus       136 ~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  202 (408)
                      +.||.|++|++........+.        .......+..+++.++     +.++++++.||.+++|++.......     
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~-----  160 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES-----  160 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH-----
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc-----
Confidence            999999999987554332221        1122233455666664     4678999999999999985422111     


Q ss_pred             CCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC
Q psy988          203 DRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL  282 (408)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  282 (408)
                            .....+......+.-.                  ......+...+.+++|+|++ +|++|+.|++|++||+.++
T Consensus       161 ------~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~  215 (393)
T d1sq9a_         161 ------NSLTLNWSPTLELQGT------------------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL  215 (393)
T ss_dssp             ------HHTTTCCCCEEEEEEE------------------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred             ------ceeeeeeccceecccc------------------eecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc
Confidence                  1111111111111100                  01111344557788999987 8899999999999999999


Q ss_pred             eeeeEEeec----cceeceeEEEEcCCCCEEEEecCCc---eEEEeeccccCccccccc-cCccccceeeeeeccceEEE
Q psy988          283 NLSCKYKGY----VNVSSQIKASFSHDGKYIVSGSENQ---CIYIWKTHHDYAKFSSVR-RDRNDFWEGIKAHNAVVTCA  354 (408)
Q Consensus       283 ~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~  354 (408)
                      +++..+...    .+...|.+++|+|||++|++|+.|+   .|++||+.++........ .........+.+|.+.|+++
T Consensus       216 ~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l  295 (393)
T d1sq9a_         216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  295 (393)
T ss_dssp             EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeee
Confidence            887766532    2345899999999999999999886   599999988744332211 11223444566899999999


Q ss_pred             EecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCcccc
Q psy988          355 VFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  402 (408)
                      +|+|                ++++|+||+.||+|++||+.+++....+
T Consensus       296 ~fsp----------------d~~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         296 SFND----------------SGETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EECS----------------SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccCC----------------CCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence            9999                9999999999999999999998766554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=225.90  Aligned_cols=288  Identities=16%  Similarity=0.233  Sum_probs=217.1

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|+|||+.++++++.+. |.+.|.+++|+| +  +|++|+.|+.+++|+.......  .....+...+.....  ..
T Consensus        35 ~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~-~--~l~s~s~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~  107 (342)
T d2ovrb2          35 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-N--IIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHL--HE  107 (342)
T ss_dssp             TTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-T--EEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEE--ET
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC-C--ccccceecccccccccccccce--ecccccceeEeeeec--cc
Confidence            38999999999999999887 999999999987 4  8999999999999999877655  344445555555444  44


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ..++.+..|+.+.+|+..+.+........          ........+....+++++.|+.|++||.+..+.+..+.++.
T Consensus       108 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  177 (342)
T d2ovrb2         108 KRVVSGSRDATLRVWDIETGQCLHVLMGH----------VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT  177 (342)
T ss_dssp             TEEEEEETTSEEEEEESSSCCEEEEEECC----------SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred             ccccccccceeEEEeecccccceeeeecc----------cccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcc
Confidence            67888999999999999987765443321          11222334557789999999999999999888888777765


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCC-
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDK-  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-  238 (408)
                      ..    ...+.+++.++++++.||.|++||++...            .+..+..|...+.++.+++  ++++++..+.. 
T Consensus       178 ~~----~~~~~~~~~~l~s~~~dg~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i  239 (342)
T d2ovrb2         178 NR----VYSLQFDGIHVVSGSLDTSIRVWDVETGN------------CIHTLTGHQSLTSGMELKD--NILVSGNADSTV  239 (342)
T ss_dssp             SC----EEEEEECSSEEEEEETTSCEEEEETTTCC------------EEEEECCCCSCEEEEEEET--TEEEEEETTSCE
T ss_pred             cc----cccccCCCCEEEEEeCCCeEEEeecccce------------eeeEecccccceeEEecCC--CEEEEEcCCCEE
Confidence            33    34567789999999999999999997643            3455677888888887765  46665543322 


Q ss_pred             ------CCCceeeec---CCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec---cceeceeEEEEcCCC
Q psy988          239 ------SESTGYVLN---ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY---VNVSSQIKASFSHDG  306 (408)
Q Consensus       239 ------~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~s~~~  306 (408)
                            .......+.   .+...+.++.+  +++++++++.||+|++||+++++++..+...   .+...|.+++|+|++
T Consensus       240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~  317 (342)
T d2ovrb2         240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK  317 (342)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred             EEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence                  122222222   23445555555  4579999999999999999999998887632   233468999999999


Q ss_pred             CEEEEecCCce----EEEeeccc
Q psy988          307 KYIVSGSENQC----IYIWKTHH  325 (408)
Q Consensus       307 ~~l~~~~~dg~----i~iw~~~~  325 (408)
                      .+||+|+.||+    |++||++.
T Consensus       318 ~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         318 LVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999885    99999874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.9e-31  Score=227.53  Aligned_cols=323  Identities=9%  Similarity=0.094  Sum_probs=228.3

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeee---ecCCceeeEEEEEecC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNE---VEGQTKLITAANFCEN   78 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~   78 (408)
                      ||+|+|||+.+++++..+.+...+..++||| ||++|++++.|++|++||+.+++......   ..+|...+.+++|+||
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD  119 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE  119 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCC
Confidence            7999999999999999999667799999999 99999999999999999999987553333   3457777888899999


Q ss_pred             CCEEEEE-ecCCEEEEEeccCCeeeEEEEEeecc---ccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccce
Q psy988           79 GKFAVVG-SYDGRCIFYTTDQLKYHTQIHVRSTR---GKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSC  153 (408)
Q Consensus        79 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  153 (408)
                      |++++++ ..++.+++||..+.............   ....+......+.+++++..++.... .+.+.+++........
T Consensus       120 G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  199 (426)
T d1hzua2         120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT  199 (426)
T ss_dssp             TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE
T ss_pred             CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccccee
Confidence            9987554 57899999999998766544322211   11123345666777888887776644 4667777766554332


Q ss_pred             eecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCC---CccccccccccceEEEEEEeCCcce
Q psy988          154 KYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDR---NDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      ... ......+..+.++|++++++++.. +..+.+++..+............   .........+...+.....++++..
T Consensus       200 ~~~-~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  278 (426)
T d1hzua2         200 VTS-IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  278 (426)
T ss_dssp             EEE-EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE
T ss_pred             eEE-eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE
Confidence            211 112234667899999998887764 55788999887665433221111   1111222334556666666677766


Q ss_pred             eeeecCCC----CCCCceeeecCCCceeeeeccCCCCCeEEE-------ecCCCeEEEEEcCCCeeeeEEeec-------
Q psy988          230 IIAQMEPD----KSESTGYVLNATGRKISGIEPMPGEDKILV-------TSNDSRIRLYDLRDLNLSCKYKGY-------  291 (408)
Q Consensus       230 ~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~d~~i~i~d~~~~~~~~~~~~~-------  291 (408)
                      .+......    ........+..|...+..++|+|++++|++       +..+++|+|||+.+++...++..+       
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~  358 (426)
T d1hzua2         279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG  358 (426)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred             EEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccC
Confidence            55543332    223455667788999999999999999995       455789999999999877665422       


Q ss_pred             cceeceeEEEEcCCCCEEEE-----ecCCceEEEeecccc
Q psy988          292 VNVSSQIKASFSHDGKYIVS-----GSENQCIYIWKTHHD  326 (408)
Q Consensus       292 ~~~~~v~~~~~s~~~~~l~~-----~~~dg~i~iw~~~~~  326 (408)
                      .+...+..++|||||++++.     ++.+|.|+|||..+.
T Consensus       359 ~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         359 EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             SSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             CCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            22345788999999997753     246889999999987

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-31  Score=218.27  Aligned_cols=256  Identities=16%  Similarity=0.189  Sum_probs=192.1

Q ss_pred             CCceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            1 MDKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .||+|++||+.++.    ..|...|.++++++ ++ .+++++.|++|++|++...+         ....+..+.+++++.
T Consensus        29 ~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~-~~-~~~s~s~D~~v~~w~~~~~~---------~~~~~~~~~~~~~~~   93 (287)
T d1pgua2          29 YDGRIMEWSSSSMH----QDHSNLIVSLDNSK-AQ-EYSSISWDDTLKVNGITKHE---------FGSQPKVASANNDGF   93 (287)
T ss_dssp             TTSCEEETTTTEEE----CCCCSCEEEEECCS-TT-CCEEEETTTEEEETTEEEEE---------CSSCEEEEEECSSSE
T ss_pred             CCCeEEEEECCCCC----CCCCCCEEEEEecC-CC-eEEEEeeccccccccccccc---------cccceeeeeeccCCc
Confidence            48999999987643    24999999999997 54 58999999999999975432         123466788888887


Q ss_pred             EEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC-eEEEEEccCcccceeecCcc
Q psy988           81 FAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS-RIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        81 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  159 (408)
                      .++++ .++.+.+|+..+.+........         ..+  .++++++..+++++.++ .+++|++...+....+... 
T Consensus        94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-  160 (287)
T d1pgua2          94 TAVLT-NDDDLLILQSFTGDIIKSVRLN---------SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-  160 (287)
T ss_dssp             EEEEE-TTSEEEEEETTTCCEEEEEECS---------SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-
T ss_pred             eEEEe-ecccceeeeccceeeeeecccc---------cee--eeeeccCcceeeeccccceeeeeeccccceeeeeeec-
Confidence            76665 5667889998887765444311         133  45567788888887764 7999999876655544432 


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ....+.+++|+|++++|++|+.||.|++||+.++...           ...+..|...|.+++|+|.+...         
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-----------~~~~~~h~~~v~~~~~~p~~~~~---------  220 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----------TSRWAFRTSKINAISWKPAEKGA---------  220 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------ECCSCCCSSCEEEEEECCCC------------
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccc-----------cccccccccccceeeeccccccc---------
Confidence            2244788999999999999999999999999765432           13356788899999999987654         


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC-CeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD-LNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCI  318 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  318 (408)
                                      ..+.+++.++++|+.|++|++||+++ ++....+.+|..  .|.+++|+|++ .|++++.|+.|
T Consensus       221 ----------------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         221 ----------------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--GVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             -------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--CEEEEEEEETT-EEEEEETTSCE
T ss_pred             ----------------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC--CeEEEEECCCC-EEEEEECCCeE
Confidence                            34466788999999999999999976 445555556655  78999999986 58888999999


Q ss_pred             EEeec
Q psy988          319 YIWKT  323 (408)
Q Consensus       319 ~iw~~  323 (408)
                      ++|++
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-31  Score=222.28  Aligned_cols=281  Identities=12%  Similarity=0.043  Sum_probs=195.9

Q ss_pred             eeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCC-CeEEEeeCC
Q psy988           60 WNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGE-DKILVTSND  138 (408)
Q Consensus        60 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  138 (408)
                      .+..++|...|++|+|+|++++|++|+.||+|+|||+++..........     ..|..+|.+++|+|++ ..|++|+.|
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-----~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-----cCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            3577899999999999999999999999999999999876543333221     2456799999999865 478889999


Q ss_pred             CeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceE
Q psy988          139 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVV  218 (408)
Q Consensus       139 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (408)
                      |.|++|++...........+... ......+.+++..+++++.++.+++||++.........        .....+    
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~--------~~~~~~----  145 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEAN-LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV--------KNLNSN----  145 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCC-SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE--------EESCSS----
T ss_pred             cceeeeecccccccccccccccc-cccccccccccccccccccccccceeeccccccceeee--------cccccc----
Confidence            99999999887766655544433 23345667788899999999999999986532211100        000000    


Q ss_pred             EEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeec-cceece
Q psy988          219 TCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQ  297 (408)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v  297 (408)
                                                   ..........+.+++..+++++.|+.|++||+...+........ ......
T Consensus       146 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T d1yfqa_         146 -----------------------------NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI  196 (342)
T ss_dssp             -----------------------------SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE
T ss_pred             -----------------------------cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccce
Confidence                                         01112223344556777899999999999999876644333221 112233


Q ss_pred             eEEE-EcCCCCEEEEecCCceEEEeeccccCccccccccCc---cccceeeeeeccceEEEEecCCchhhhhccCCCCCC
Q psy988          298 IKAS-FSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDR---NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  373 (408)
Q Consensus       298 ~~~~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s  373 (408)
                      .+.. +.+++..+++++.||.+.+|++..............   ........+|...|++++|+|               
T Consensus       197 ~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---------------  261 (342)
T d1yfqa_         197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP---------------  261 (342)
T ss_dssp             EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT---------------
T ss_pred             eeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC---------------
Confidence            3444 455788999999999999999876543332211110   111223346777899999999               


Q ss_pred             CcccEEEEEecCCeEEEEeCCCCCCccccc
Q psy988          374 STGYVLVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       374 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                       ++++||||+.||.|++||+.+++....++
T Consensus       262 -~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         262 -RHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             -TTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             -CccEEEEECCCCEEEEEECCCCcEEEEec
Confidence             89999999999999999999987665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.8e-30  Score=223.63  Aligned_cols=337  Identities=9%  Similarity=0.039  Sum_probs=211.9

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccC
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT  116 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  116 (408)
                      ++++.+.||+|+|||+.+++.+  ..+..|. .+..++|+|||+++++++.|+++++||+.+.+......+...   ..|
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~--~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~---~~~  107 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIV--KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IEA  107 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEE--EEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEE--EEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC---CCC
Confidence            4577888999999999999877  5777664 589999999999999999999999999998876544433332   223


Q ss_pred             CCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCE-EEEeecCceEEEeeeccce
Q psy988          117 GRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY-IVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       117 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~  194 (408)
                      ...+.+++|+|||++++++ ..++.+++||..++.....+..+...  +....+.+++.. .++.+.|+...++......
T Consensus       108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--VDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC--SSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC--ccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            3467788999999998665 57899999999998887776655432  222334444332 2233334433333332211


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC--------CCceeeec--CCCceeeeeccCCCCC-
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS--------ESTGYVLN--ATGRKISGIEPMPGED-  263 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~i~~~~~~~~~~-  263 (408)
                      ...................+...+..+.++|++++++........        ........  ..........+.+.+. 
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            111111111111122234566778899999999988776443321        11111111  1111111222222221 


Q ss_pred             -e-EEEecCCCeEEEEEcCC-------CeeeeEEeeccceeceeEEEEcCCCCEEEE-------ecCCceEEEeeccccC
Q psy988          264 -K-ILVTSNDSRIRLYDLRD-------LNLSCKYKGYVNVSSQIKASFSHDGKYIVS-------GSENQCIYIWKTHHDY  327 (408)
Q Consensus       264 -~-l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~~~dg~i~iw~~~~~~  327 (408)
                       . .+....|+.+.+|+...       ++....+.+|..  .+..++|+||+++|++       ++.|++|++||+.++.
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~--~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS--CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEecCCC--ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence             1 12335677777777654       366777877655  6778999999999995       5567899999998874


Q ss_pred             ccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEE-EEE----ecCCeEEEEeCCCCCCcccc
Q psy988          328 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVL-VSA----DFNGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~----~~dg~v~iw~~~~~~~~~~~  402 (408)
                      ......+.   .....+..|...|.+++|||                ||+++ +++    +.||.|+|||.++++....+
T Consensus       344 ~~~~~~~~---~~~~~~~~~~~rv~~~~fSp----------------DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         344 AKYQVLPI---AEWADLGEGAKRVVQPEYNK----------------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             SCCEEECH---HHHHCCCSSCCCEEEEEECS----------------SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             cCeEEecc---chhcccCCCCccEEEEEECC----------------CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence            33211110   01112344667799999999                88766 343    35899999999999865544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-29  Score=208.71  Aligned_cols=251  Identities=19%  Similarity=0.312  Sum_probs=188.6

Q ss_pred             CCceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCC
Q psy988            1 MDKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      .||+|+|||+.+++++..+. |.+.|++++|   ++++|++|+.|+.|++|++..+....  ....+...  ...+.+..
T Consensus        33 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~  105 (293)
T d1p22a2          33 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLN--TLIHHCEA--VLHLRFNN  105 (293)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEE--EECCCCSC--EEEEECCT
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeecccccccccccccccccccc--cccccccc--cccccccc
Confidence            38999999999999999998 9999999987   56799999999999999999887653  33333322  23455667


Q ss_pred             CEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcc
Q psy988           80 KFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYV  159 (408)
Q Consensus        80 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  159 (408)
                      ..++++..++.+.+|+.............     ..+...+..+.+.  ...+++++.|+.|++||+++++.+..+.++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         106 GMMVTCSKDRSIAVWDMASPTDITLRRVL-----VGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEE-----CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             cceeecccccceeEeeccccccccccccc-----cccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccc
Confidence            78999999999999999876654433322     2344577777665  5678899999999999999999888877655


Q ss_pred             ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCC
Q psy988          160 NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKS  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  239 (408)
                      ..  +..  +.+++.++++++.||.|++||+++....            .....+...+..                   
T Consensus       179 ~~--v~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~v~~-------------------  223 (293)
T d1p22a2         179 RG--IAC--LQYRDRLVVSGSSDNTIRLWDIECGACL------------RVLEGHEELVRC-------------------  223 (293)
T ss_dssp             SC--EEE--EEEETTEEEEEETTSCEEEEETTTCCEE------------EEECCCSSCEEE-------------------
T ss_pred             cc--ccc--ccCCCCeEEEecCCCEEEEEecccceee------------eeecccceeeee-------------------
Confidence            43  433  4445778999999999999998754322            222223322222                   


Q ss_pred             CCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCC---------CeeeeEEeeccceeceeEEEEcCCCCEEE
Q psy988          240 ESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD---------LNLSCKYKGYVNVSSQIKASFSHDGKYIV  310 (408)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  310 (408)
                                        +++++.+|++++.||.|++||+..         ...+..+.+|..  .|.+++|  ++++|+
T Consensus       224 ------------------~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~--d~~~l~  281 (293)
T d1p22a2         224 ------------------IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIV  281 (293)
T ss_dssp             ------------------EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEE
T ss_pred             ------------------ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEE--cCCEEE
Confidence                              234567789999999999999753         235566777655  7788888  567899


Q ss_pred             EecCCceEEEee
Q psy988          311 SGSENQCIYIWK  322 (408)
Q Consensus       311 ~~~~dg~i~iw~  322 (408)
                      +|+.||+|++||
T Consensus       282 s~s~Dg~i~iWD  293 (293)
T d1p22a2         282 SSSHDDTILIWD  293 (293)
T ss_dssp             ECCSSSEEEEEC
T ss_pred             EEecCCEEEEeC
Confidence            999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=5.8e-26  Score=187.23  Aligned_cols=258  Identities=13%  Similarity=0.119  Sum_probs=193.8

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      |++|.|||+++++.+..+.....+..++|+| +|++| ++++.++.|++||+.+++..  ..+..+. .+..+.|++++.
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~--~~~~~~~-~~~~~~~~~~~~   86 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVI--ATVPAGS-SPQGVAVSPDGK   86 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEE--EEEECSS-SEEEEEECTTSS
T ss_pred             CCEEEEEECCCCeEEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCcee--eeeeccc-cccccccccccc
Confidence            7899999999999999999888899999999 88877 56667899999999998766  5566554 468899999998


Q ss_pred             EEEE-EecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCc
Q psy988           81 FAVV-GSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGY  158 (408)
Q Consensus        81 ~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  158 (408)
                      ++++ +..++.+.+|+..+.+.......         .....++.++|++..++.+ ..++.+.+|+..+......+...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          87 QVYVTNMASSTLSVIDTTSNTVAGTVKT---------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC---------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccceeeecccccceeeeeccc---------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            6655 55678999999998876554432         2367889999999988665 55788999999998877776654


Q ss_pred             cccccceEEEEecCCCEEEEeecC-ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCC
Q psy988          159 VNVSSQIKASFSHDGKYIVSGSEN-QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  237 (408)
                      ..   +..+.++|+++.++++..+ +.+.+|+........             ......                     
T Consensus       158 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~---------------------  200 (301)
T d1l0qa2         158 RS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-------------TVKVEA---------------------  200 (301)
T ss_dssp             SS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-------------EEECSS---------------------
T ss_pred             CC---ceEEEeeccccceeeecccccccccccccceeeee-------------cccccC---------------------
Confidence            33   5678899999988887765 456666654321110             011112                     


Q ss_pred             CCCCceeeecCCCceeeeeccCCCCCeEEEe---cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE-EEec
Q psy988          238 KSESTGYVLNATGRKISGIEPMPGEDKILVT---SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGS  313 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~  313 (408)
                                    .+..+++++++..++++   ..++.|++||+.+++....+..+.   .+..++|+|||++| ++++
T Consensus       201 --------------~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         201 --------------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             --------------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEET
T ss_pred             --------------CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEEC
Confidence                          23344455555555443   445789999999999888776533   46789999999987 5778


Q ss_pred             CCceEEEeecccc
Q psy988          314 ENQCIYIWKTHHD  326 (408)
Q Consensus       314 ~dg~i~iw~~~~~  326 (408)
                      .|+.|++||+.++
T Consensus       264 ~~~~i~v~D~~t~  276 (301)
T d1l0qa2         264 FCNTVSVIDTATN  276 (301)
T ss_dssp             TTTEEEEEETTTT
T ss_pred             CCCeEEEEECCCC
Confidence            8999999999886

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=9.9e-28  Score=201.23  Aligned_cols=306  Identities=9%  Similarity=0.038  Sum_probs=208.8

Q ss_pred             CEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccc
Q psy988           36 RYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKN  114 (408)
Q Consensus        36 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  114 (408)
                      +|+++++.|++|++||+++++......+..+...+.+++|+|||++++ +++.++.|.+||+.+++...........   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~---   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc---
Confidence            589999999999999999998774333444556688999999999874 5678999999999998876655433221   


Q ss_pred             cCCCCeEEEeeCCCCCeEEEee------------CCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC
Q psy988          115 ATGRKISGIEPMPGEDKILVTS------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN  182 (408)
Q Consensus       115 ~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  182 (408)
                      .+...+..++|+|++++++++.            .+..+.+||..+++....+.....   +..++++|+|+++++++.+
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEESSS
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC---ceEEEEcCCCCEEEEEcCC
Confidence            1223466789999999998875            357889999999888777665433   5568999999999998654


Q ss_pred             ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988          183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE  262 (408)
Q Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (408)
                        +.+||..++............             ....+.|++..+......           .............+.
T Consensus       156 --~~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  209 (337)
T d1pbyb_         156 --LHVMDPEAGTLVEDKPIQSWE-------------AETYAQPDVLAVWNQHES-----------SGVMATPFYTARKDI  209 (337)
T ss_dssp             --EEEEETTTTEEEEEECSTTTT-------------TTTBCCCBCCCCCCCCTT-----------TTEEEEEEEEEBTTS
T ss_pred             --cceeeeecCcEEEEeecCCcc-------------ccceecCCcceeeccccc-----------cceeeeeeeeeeecc
Confidence              678888765433221110000             001122222211100000           000001111111222


Q ss_pred             CeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccce
Q psy988          263 DKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWE  342 (408)
Q Consensus       263 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  342 (408)
                      .....+..++.+.+||..+++.......+ ....+..+.++|++.+++.+  ++.|++||+.++            +.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~------------~~~~  274 (337)
T d1pbyb_         210 DPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN------------ASIK  274 (337)
T ss_dssp             CTTSGGGEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT------------EEEE
T ss_pred             ceeeecccCccEEEEEcCCCcEEEEEecC-CCcceEEEEecccceEEEEc--cccEEEEECCCC------------cEEE
Confidence            23334456678999999988765543322 22356678999999998876  588999999986            4444


Q ss_pred             eeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccccc
Q psy988          343 GIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       343 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                      .+ .+...+.+++|+|                ||++|++++.||.|++||..+++....++++
T Consensus       275 ~~-~~~~~~~~~~~s~----------------dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         275 RV-PLPHSYYSVNVST----------------DGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EE-ECSSCCCEEEECT----------------TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EE-cCCCCEEEEEECC----------------CCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            44 3567789999999                9999999999999999999999988887663

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=8.1e-26  Score=186.38  Aligned_cols=272  Identities=14%  Similarity=0.166  Sum_probs=198.6

Q ss_pred             EEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEEEEeeccccccC
Q psy988           38 FLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT  116 (408)
Q Consensus        38 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  116 (408)
                      +++++.|++|.+||+++++..  ..+... ..+..++|+|||++|+ +++.++.|++||+.+.+....+..         
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~--~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~---------   72 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVT--ATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---------   72 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE--EEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred             EEEECCCCEEEEEECCCCeEE--EEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec---------
Confidence            456678999999999999876  444433 3468899999999875 666789999999999887655432         


Q ss_pred             CCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEE-eecCceEEEeeeccce
Q psy988          117 GRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHHDY  194 (408)
Q Consensus       117 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~  194 (408)
                      ...+..+.|++++..++++ ..++.+.+|+..+++....+..+..   ...+.++|+++.++. +..++.+.+|+..+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~  149 (301)
T d1l0qa2          73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNNGDKTVSVINTVTKA  149 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccccccccccccccccccccccceeeecccccceeeeecccccc---ceEEEeecCCCeeeeeeccccceeeeeccccc
Confidence            1257889999999877665 5578899999999887777665433   567899999998765 4557889999986543


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec-CCCe
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS-NDSR  273 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~  273 (408)
                      ....            +. +.                                   ..+..+.++|+++.++++. .++.
T Consensus       150 ~~~~------------~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         150 VINT------------VS-VG-----------------------------------RSPKGIAVTPDGTKVYVANFDSMS  181 (301)
T ss_dssp             EEEE------------EE-CC-----------------------------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             eeee------------cc-cC-----------------------------------CCceEEEeeccccceeeecccccc
Confidence            2211            11 11                                   1233445555566555554 4577


Q ss_pred             EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEec---CCceEEEeeccccCccccccccCccccceeeeeeccc
Q psy988          274 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS---ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  350 (408)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  350 (408)
                      +.+|+....+.........   .+..++|+++++.++++.   .++.|++||+.++            +.+..+.. ...
T Consensus       182 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~------------~~~~~~~~-~~~  245 (301)
T d1l0qa2         182 ISVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------KITARIPV-GPD  245 (301)
T ss_dssp             EEEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------------EEEEEEEC-CSS
T ss_pred             cccccccceeeeecccccC---CcceeeccccccccccccccceeeeeeeeecCCC------------eEEEEEcC-CCC
Confidence            8888888777766665433   355789999999887653   4578999999886            44444443 456


Q ss_pred             eEEEEecCCchhhhhccCCCCCCCcccEE-EEEecCCeEEEEeCCCCCCcccccc
Q psy988          351 VTCAVFAPCPELIIAQMEPDKSESTGYVL-VSADFNGVIRVFLNKTKPKHSSLPV  404 (408)
Q Consensus       351 v~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~  404 (408)
                      +.+++|+|                ||++| ++++.|+.|++||+.+++....+++
T Consensus       246 ~~~va~sp----------------dg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         246 PAGIAVTP----------------DGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEECT----------------TSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEeC----------------CCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            79999999                88876 6778899999999999998888876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.96  E-value=1.7e-27  Score=200.49  Aligned_cols=317  Identities=12%  Similarity=0.064  Sum_probs=212.9

Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec-CCceeeEEEEEecCCCEEE-EEecCCEEEEEeccCCeeeEEE
Q psy988           28 ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE-GQTKLITAANFCENGKFAV-VGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      ++|++ ++++|++++.|++|.+||+.+++..  ..+. .|...+.+++|+|||++++ ++..++.|.+||+.+++.....
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~--~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVY--KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEE--EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEE--EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            46889 9999999999999999999999776  4554 4556688999999999875 5557899999999998876654


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEee------------CCCeEEEEEccCcccceeecCccccccceEEEEecCC
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVTS------------NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  173 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (408)
                      .....  ...+...+..++|+|||++++++.            .++.+.+||..+++....+..+.....+..+.+++++
T Consensus        79 ~~~~~--~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          79 NLSSV--PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             ESCCS--TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             ccccc--ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            43221  111223466789999999998764            4678999999988776655444433344456667777


Q ss_pred             CEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          174 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      ..++++   +.+.+|+..++.....            +.. ......+.++|++..+...........         ...
T Consensus       157 ~~~~~~---~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  211 (346)
T d1jmxb_         157 SLYVAG---PDIYKMDVKTGKYTVA------------LPL-RNWNRKGYSAPDVLYFWPHQSPRHEFS---------MLY  211 (346)
T ss_dssp             CEEEES---SSEEEECTTTCCEEEE------------ECS-TTCCCTTBCCCBCCCCCCCCCTTCEEE---------EEE
T ss_pred             EEEEeC---CcceEEEccCCCEEEE------------Eec-CCCccceEEeccccEEEEEecCCCceE---------eee
Confidence            655543   4588888865433221            111 112233445555554432221111000         001


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCcccccc
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  333 (408)
                      ....+.+....++++..+..+.+||+.++......... +...+..+.+++++.+++... ++.|.+||..++       
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~-------  282 (346)
T d1jmxb_         212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR-------  282 (346)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT-------
T ss_pred             eeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec-ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC-------
Confidence            12223344455566677788999999988766554332 223567889999998888766 457999999886       


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCCccccccc
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                           +.+..+. +...+.+++|+|                ||++|++++.||.|++||+.+++....++++
T Consensus       283 -----~~~~~~~-~~~~~~~va~s~----------------DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         283 -----KLIKAAN-LDHTYYCVAFDK----------------KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             -----EEEEEEE-CSSCCCEEEECS----------------SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -----cEEEEEc-CCCCEEEEEEcC----------------CCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence                 4444443 456799999999                9999999999999999999999988777663

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=8.2e-28  Score=203.70  Aligned_cols=281  Identities=13%  Similarity=-0.009  Sum_probs=198.3

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC--EEEEEeccCCeeeE
Q psy988           26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG--RCIFYTTDQLKYHT  103 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~  103 (408)
                      ..-.|||.||+++|+++. |.|++||+.++...   .+ +|...|.+++|+|||++|++++.+.  .|++||.++++...
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~---~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~   80 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL---KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK   80 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEE---EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEE---Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE
Confidence            346799978999998875 89999999888765   23 6889999999999999998877664  79999999876432


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEee---
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS---  180 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---  180 (408)
                               ...|...+.+++|+|++++|++++.++.+++|++.+++....+..+...  +.+++|+|+|++|+.+.   
T Consensus        81 ---------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          81 ---------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM--ITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             ---------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--CCCEEECTTSCEEEEEEEEC
T ss_pred             ---------eeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccc--ccchhhccceeeeeeecccc
Confidence                     1245678999999999999999999999999999998887777665543  66799999999998654   


Q ss_pred             -------cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          181 -------ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       181 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                             .++.+++||+.++...             .+.                                   .+...+
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~-------------~~~-----------------------------------~~~~~~  181 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIF-------------AAT-----------------------------------TENSHD  181 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEE-------------ECS-----------------------------------CSSSBE
T ss_pred             ccceeeccccceeeeccccCcee-------------eec-----------------------------------cccccc
Confidence                   3456888887653211             111                                   233344


Q ss_pred             eeeccCCCCCeEEEecCCCeEEEEEcCCCeee-------eEEeeccceeceeEEEEcCCCCEEEEecCCc-----eEEEe
Q psy988          254 SGIEPMPGEDKILVTSNDSRIRLYDLRDLNLS-------CKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-----CIYIW  321 (408)
Q Consensus       254 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw  321 (408)
                      ..++|+|+|++|++++.++.+.+||.......       ..+..+..  ....+.|++++..++++..+.     .+..+
T Consensus       182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  259 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG--SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI  259 (360)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT--CCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC
T ss_pred             ccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccC--ccccceECCCcCcccccceeecccccceeec
Confidence            55666777778888999999999997654322       11222222  233457788887776654432     23333


Q ss_pred             eccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCCCC
Q psy988          322 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTKPK  398 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  398 (408)
                      +...+             ....+..+.+.+..+.+.+.+.             ++.++++++.++.|++||+.+++.
T Consensus       260 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~~~d~~~~~~  310 (360)
T d1k32a3         260 NVDPG-------------DYRMIIPLESSILIYSVPVHGE-------------FAAYYQGAPEKGVLLKYDVKTRKV  310 (360)
T ss_dssp             SCCCB-------------CEEEEEECSSEEEEEECCCCCS-------------HHHHHHCCCCCEEEEEEETTTCCE
T ss_pred             ccCcC-------------ceeEeeecCCCceEEEEEecCC-------------CeeEEEecCCCCEEEEEECCCCeE
Confidence            33322             2233445555566666655222             566788999999999999988764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.7e-25  Score=187.41  Aligned_cols=280  Identities=9%  Similarity=-0.026  Sum_probs=185.9

Q ss_pred             CceEEEEeccCCeeEeEEE---eCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeecCC-----ceeeEE
Q psy988            2 DKTVRLWHISRKECLCCFQ---HIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVEGQ-----TKLITA   72 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~v~~   72 (408)
                      |++|+|||+++++.+..+.   +...+.+++|+| ||+++ ++++.++.|.+||+.+++...  .+..+     ...+..
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~   86 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTPEERVKSLFG   86 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBTTEEEECTTC
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEE--EEecCCCcccccceee
Confidence            7999999999999999986   456688999999 88887 566779999999999988763  33332     344568


Q ss_pred             EEEecCCCEEEEEec------------CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCe
Q psy988           73 ANFCENGKFAVVGSY------------DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSR  140 (408)
Q Consensus        73 ~~~~~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  140 (408)
                      ++|+|++++++++..            ++.+.+||..+.+.......         ...+..++|+|+++++++++.  .
T Consensus        87 v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~--~  155 (337)
T d1pbyb_          87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---------PRQITMLAWARDGSKLYGLGR--D  155 (337)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---------CSSCCCEEECTTSSCEEEESS--S
T ss_pred             EEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc---------cCCceEEEEcCCCCEEEEEcC--C
Confidence            899999999988764            56788899988876554432         236778999999999999865  4


Q ss_pred             EEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEE
Q psy988          141 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVT  219 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (408)
                      +.+||..+++....+..+....   ...+.+++..+..... .+....++..................+.....+...+.
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             cceeeeecCcEEEEeecCCccc---cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence            7789999888776665433321   1334455443332222 22222222110000000000000000000001111111


Q ss_pred             EEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeE
Q psy988          220 CAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIK  299 (408)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  299 (408)
                      ...+                       ..+...+..+.++|++.+++.+  ++.|++||+.+++.+..+...   ..+.+
T Consensus       233 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~---~~~~~  284 (337)
T d1pbyb_         233 MREV-----------------------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---HSYYS  284 (337)
T ss_dssp             EEEE-----------------------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCE
T ss_pred             EEEe-----------------------cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCC---CCEEE
Confidence            2222                       2334455667788888887765  578999999999998887642   25678


Q ss_pred             EEEcCCCCEEEEecCCceEEEeecccc
Q psy988          300 ASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       300 ~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      ++|+|||++|++++.|+.|++||..+.
T Consensus       285 ~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         285 VNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999999999999999999999999886

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.4e-24  Score=187.07  Aligned_cols=294  Identities=7%  Similarity=-0.045  Sum_probs=192.6

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecccc
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGK  113 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  113 (408)
                      +.-++++.+.||+|.|||..+++++  ..+..+. .+..++|+|||+++++++.||.+++||+.+.+......+....  
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~--~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~--  105 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIK--TVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--  105 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEE--EEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEE--EEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC--
Confidence            3334688999999999999999987  5676664 5899999999999999999999999999887654433333221  


Q ss_pred             ccCCCCeEEEeeCCCCCeE-EEeeCCCeEEEEEccCcccceeecCccc---------cccceEEEEecCCCEEE-EeecC
Q psy988          114 NATGRKISGIEPMPGEDKI-LVTSNDSRIRLYDLRDLNLSCKYKGYVN---------VSSQIKASFSHDGKYIV-SGSEN  182 (408)
Q Consensus       114 ~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~-~~~~d  182 (408)
                       .+.+.+.+..|+|||++| +++..++.|++||..+++.+..+..+..         ......+.++|++..++ +...+
T Consensus       106 -~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         106 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             -CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence             223456677889999987 5567799999999999988777654332         22244578899888764 45567


Q ss_pred             ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCC
Q psy988          183 QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGE  262 (408)
Q Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (408)
                      +.|.+||........                    +..+                          ..+..+..++|+|+|
T Consensus       185 ~~i~~~d~~~~~~~~--------------------~~~i--------------------------~~g~~~~~~~~spdg  218 (432)
T d1qksa2         185 GKILLVDYTDLNNLK--------------------TTEI--------------------------SAERFLHDGGLDGSH  218 (432)
T ss_dssp             TEEEEEETTCSSEEE--------------------EEEE--------------------------ECCSSEEEEEECTTS
T ss_pred             CeEEEEEccCCCcce--------------------EEEE--------------------------cccCccccceECCCC
Confidence            899999875432110                    0000                          122334556666666


Q ss_pred             CeEEEe-cCCCeEEEEEcCCCeeeeEEeecc---ceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCccccccccCc
Q psy988          263 DKILVT-SNDSRIRLYDLRDLNLSCKYKGYV---NVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDR  337 (408)
Q Consensus       263 ~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~  337 (408)
                      ++++++ ..++.+.++|..+++....+....   +........+...+...++.. .++.|.+|......          
T Consensus       219 ~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----------  288 (432)
T d1qksa2         219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----------  288 (432)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----------
T ss_pred             CEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----------
Confidence            665555 456789999999888777665321   112233344554555555443 47788888765431          


Q ss_pred             cccceeeeeeccceEEEEecCCchhhhhccCCC-------------------CCCCcccEEEEEecCCeEEEEeCCC
Q psy988          338 NDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD-------------------KSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       338 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-------------------~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                            ...|...|....++|++..+++...++                   ...+|++.|++++.|+.+++|++.+
T Consensus       289 ------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~  359 (432)
T d1qksa2         289 ------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE  359 (432)
T ss_dssp             ------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH
T ss_pred             ------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccc
Confidence                  112333344444444433333333222                   1126899999999999999998754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.9e-22  Score=168.40  Aligned_cols=287  Identities=13%  Similarity=0.129  Sum_probs=186.0

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeecccccc
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNA  115 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  115 (408)
                      .+++++.|++|++|++.............|.+.+..++|+|||++|++++ .|+.|++|++.............     .
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-----~   80 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-----A   80 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-----E
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-----c
Confidence            45777899999999997655433234446778899999999999996655 48999999998665433322221     1


Q ss_pred             CCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec-CceEEEeeeccc
Q psy988          116 TGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHD  193 (408)
Q Consensus       116 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  193 (408)
                      ....+..++|+|+|++|++++. ++.+.+|+..................+.++.++|+++++++++. +..+.+|+....
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            2245778999999999999875 67899999887665544443333344667899999999888775 457899987643


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCC
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDS  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~  272 (408)
                      ........                   .                      .........+..++|++++.+++.. ...+
T Consensus       161 ~~~~~~~~-------------------~----------------------~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~  199 (333)
T d1ri6a_         161 GHLVAQDP-------------------A----------------------EVTTVEGAGPRHMVFHPNEQYAYCVNELNS  199 (333)
T ss_dssp             SCEEEEEE-------------------E----------------------EEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             Ccceeeec-------------------e----------------------eeeeecCCCccEEEEeccceeEEeeccccC
Confidence            21110000                   0                      0000222334556666666666554 4566


Q ss_pred             eEEEEEcCCCee----eeEEe----eccceeceeEEEEcCCCCEEEE-ecCCceEEEeeccccCccccccccCcccccee
Q psy988          273 RIRLYDLRDLNL----SCKYK----GYVNVSSQIKASFSHDGKYIVS-GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  343 (408)
Q Consensus       273 ~i~i~d~~~~~~----~~~~~----~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  343 (408)
                      ...+++......    .....    ..........+++++++++++. +..++.+.+|++......         .....
T Consensus       200 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  270 (333)
T d1ri6a_         200 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---------LSKEG  270 (333)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---------EEEEE
T ss_pred             ceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE---------EEEEE
Confidence            778887654321    11111    1112234556889999997765 456789999998765221         11112


Q ss_pred             eeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe-cCCeEEEEeCC
Q psy988          344 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD-FNGVIRVFLNK  394 (408)
Q Consensus       344 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iw~~~  394 (408)
                      ...+...+.+++|+|                ||++|++++ .++.|++|++.
T Consensus       271 ~~~~~~~p~~~a~sp----------------DGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         271 FQPTETQPRGFNVDH----------------SGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEECSSSCCCEEECT----------------TSSEEEEECTTTCEEEEEEEE
T ss_pred             EeCCCCCeeEEEEeC----------------CCCEEEEEECCCCeEEEEEEE
Confidence            223345678899999                899877665 46899999654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=2.7e-23  Score=174.54  Aligned_cols=287  Identities=9%  Similarity=0.018  Sum_probs=186.4

Q ss_pred             CceEEEEeccCCeeEeEEE--eCCceEEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCceeeeeec----CCceeeEEEE
Q psy988            2 DKTVRLWHISRKECLCCFQ--HIDFVTAICFHPRDDRYF-LSGSLDGKLRLWNIPDKKVAVWNEVE----GQTKLITAAN   74 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~v~~~~   74 (408)
                      |++|.|||+++++++.++.  |...+.+++|+| ||+++ ++++.++.|++||+.+++........    .+...+..++
T Consensus        17 ~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~   95 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA   95 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEE
Confidence            7899999999999999887  567889999999 88876 55567899999999998765322211    1223466899


Q ss_pred             EecCCCEEEEEe------------cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           75 FCENGKFAVVGS------------YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        75 ~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      |+|||+++++++            .++.+.+|+..+++.........      ....+..+.+++++..++. +  +.+.
T Consensus        96 ~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~--~~~~  166 (346)
T d1jmxb_          96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP------MPRQVYLMRAADDGSLYVA-G--PDIY  166 (346)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE------CCSSCCCEEECTTSCEEEE-S--SSEE
T ss_pred             EecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee------ccCceEEEEecCCCEEEEe-C--Ccce
Confidence            999999998775            36778888887765433222211      1124555666666655443 2  4689


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                      +|++.+++....+..+..   ...+.++|++..++.. ..++.+.+++.........          ..+........-.
T Consensus       167 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  233 (346)
T d1jmxb_         167 KMDVKTGKYTVALPLRNW---NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK----------QDPATADLLYGYL  233 (346)
T ss_dssp             EECTTTCCEEEEECSTTC---CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----------------CCCEEEEEEE
T ss_pred             EEEccCCCEEEEEecCCC---ccceEEeccccEEEEEecCCCceEeeeeeeeeccCc----------eeEeeccCCceEE
Confidence            999998888777665433   2345678887765544 3445555555421100000          0000000000000


Q ss_pred             EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEE
Q psy988          222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKAS  301 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  301 (408)
                      .+.           .............+...+..+.+++++.+++.... +.|.+||..+++.+..+... +  .+.+++
T Consensus       234 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~-~--~~~~va  298 (346)
T d1jmxb_         234 SVD-----------LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLD-H--TYYCVA  298 (346)
T ss_dssp             EEE-----------TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECS-S--CCCEEE
T ss_pred             EEE-----------CCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCC-C--CEEEEE
Confidence            000           01111111223345556777788888888777554 57999999999988777642 2  577999


Q ss_pred             EcCCCCEEEEecCCceEEEeecccc
Q psy988          302 FSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       302 ~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      |+|||++|++++.|+.|++||..+.
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EcCCCCEEEEEeCCCcEEEEECccC
Confidence            9999999999999999999999986

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.3e-21  Score=163.32  Aligned_cols=280  Identities=15%  Similarity=0.237  Sum_probs=182.3

Q ss_pred             CceEEEEeccCC---eeEeEEEeCCceEEEEEcCCCCCEEEEEe-CCCcEEEEecCCCCcee-eeeecCCceeeEEEEEe
Q psy988            2 DKTVRLWHISRK---ECLCCFQHIDFVTAICFHPRDDRYFLSGS-LDGKLRLWNIPDKKVAV-WNEVEGQTKLITAANFC   76 (408)
Q Consensus         2 Dg~i~vwd~~~~---~~~~~~~h~~~v~~~~~sp~~~~~l~t~~-~dg~i~iw~~~~~~~~~-~~~~~~~~~~v~~~~~~   76 (408)
                      |++|+|||+.+.   +.++.+.|.+.|..|+|+| ||++|++++ .|+.|++|++....... ......+...+..++|+
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s   91 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD   91 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred             CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence            689999999764   4445567999999999999 999886555 58999999998765332 11222344557789999


Q ss_pred             cCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCeEEEEEccCccccee
Q psy988           77 ENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSRIRLYDLRDLNLSCK  154 (408)
Q Consensus        77 ~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~  154 (408)
                      |||++|++++. ++.+.+|+.............      .+...+.++.++|+++++++++. +..|.+|+.........
T Consensus        92 pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             CCCCEEeecccCCCceeeeccccccceeccccc------CCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            99999999885 678999998876654433322      22346778999999999888764 56799999876543322


Q ss_pred             ec----CccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcce
Q psy988          155 YK----GYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPEL  229 (408)
Q Consensus       155 ~~----~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  229 (408)
                      ..    .......+..++|++++.+++... ..+...+++........                  .....+...|.+  
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------~~~~~~~~~~~~--  225 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI------------------ECVQTLDMMPEN--  225 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC------------------EEEEEEECSCTT--
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce------------------eeeeeeeeeecC--
Confidence            11    111123345789999998876654 45567777654321110                  000111111110  


Q ss_pred             eeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCCCeeeeEEeec-cceeceeEEEEcCCCC
Q psy988          230 IIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDLNLSCKYKGY-VNVSSQIKASFSHDGK  307 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~  307 (408)
                                       .........+++++++++++. +..++.+.+|++...........+ .....+..++|+|||+
T Consensus       226 -----------------~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk  288 (333)
T d1ri6a_         226 -----------------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK  288 (333)
T ss_dssp             -----------------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS
T ss_pred             -----------------CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC
Confidence                             012233445667777776555 467789999998765544443332 2223466899999999


Q ss_pred             EEEEec-CCceEEEeeccc
Q psy988          308 YIVSGS-ENQCIYIWKTHH  325 (408)
Q Consensus       308 ~l~~~~-~dg~i~iw~~~~  325 (408)
                      +|++++ .++.|.+|+++.
T Consensus       289 ~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         289 YLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEECTTTCEEEEEEEET
T ss_pred             EEEEEECCCCeEEEEEEEC
Confidence            987765 568999997754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.92  E-value=2.4e-21  Score=164.39  Aligned_cols=299  Identities=7%  Similarity=-0.093  Sum_probs=198.8

Q ss_pred             CceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEeC----------CCcEEEEecCCCCceeeeeecCCcee-
Q psy988            2 DKTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGSL----------DGKLRLWNIPDKKVAVWNEVEGQTKL-   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~-   69 (408)
                      ++.|.+||..+++.+..+. +.  ...++|+| ||++|++++.          ++.|.+||..+++..  ..+..+... 
T Consensus        46 ~~~v~v~D~~tg~~~~~~~~~~--~~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~--~~~~~~~~~~  120 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVNGGF--LPNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI--ADIELPDAPR  120 (373)
T ss_pred             CceEEEEECCCCCEEEEEeCCC--CccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcEE--EEEecCCcce
Confidence            3568999999999998876 43  33799999 9999988753          578999999998876  344433332 


Q ss_pred             ------eEEEEEecCCCEEEEEec--CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeE-EEeeCCCe
Q psy988           70 ------ITAANFCENGKFAVVGSY--DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKI-LVTSNDSR  140 (408)
Q Consensus        70 ------v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~  140 (408)
                            ...+.|+++++.++....  ++.+.+|+....+.....            ....++.++|+++.+ ++.+.|+.
T Consensus       121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~g~~~~v~~~~dg~  188 (373)
T d2madh_         121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL------------SSPTCYHIHPGAPSTFYLLCAQGG  188 (373)
T ss_pred             eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe------------ccceeEEEecCCCcEEEEEcCCCe
Confidence                  245788899887766543  467888888776543222            245678899998766 46688999


Q ss_pred             EEEEEccCcccceeecCccc----cccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          141 IRLYDLRDLNLSCKYKGYVN----VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       141 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      +.+|+...+...........    ........+++++. ++..+.++.+++|+...........................
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (373)
T d2madh_         189 LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG  267 (373)
T ss_pred             EEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccC
Confidence            99999988776655433221    11122344555554 44555788999999876543221111000000000111112


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceec
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSS  296 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  296 (408)
                      ....++++|++..++                         .+..++..++....++.+.+||..+++.+..+...   ..
T Consensus       268 ~~~~~~~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~---~~  319 (373)
T d2madh_         268 GWQQVAYLKSSDGIY-------------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG---HD  319 (373)
T ss_pred             cceeeEEecCCCeEE-------------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEecCC---CC
Confidence            233344555544432                         22344556677788899999999999988877642   25


Q ss_pred             eeEEEEcCCCCE--EEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          297 QIKASFSHDGKY--IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       297 v~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                      +..++|+|||+.  +++++.|+.|++||+.++            +.+..+..+....+.+++.+
T Consensus       320 ~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg------------~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG------------DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCC------------CEEEEECCCCCCCcEEEEec
Confidence            678999999984  467899999999999998            67777877777777777754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=8.8e-21  Score=160.88  Aligned_cols=300  Identities=8%  Similarity=-0.072  Sum_probs=194.4

Q ss_pred             eCCceEEEEEcCCCCCEEEEEe-----CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe---------
Q psy988           21 HIDFVTAICFHPRDDRYFLSGS-----LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS---------   86 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------   86 (408)
                      +.+++.+++++| +++.++...     .++.|.+||..+++..  ..+..+..  ..++|+|||++|++++         
T Consensus        19 ~~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~--~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          19 ADGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             CCCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEE--EEEeCCCC--ccEEEcCCCCEEEEEeecCCccccc
Confidence            888999999999 888877642     3467999999999876  45655543  3789999999999875         


Q ss_pred             -cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccceeecCcccccc
Q psy988           87 -YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNVSS  163 (408)
Q Consensus        87 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~  163 (408)
                       .++.|.+||..+++.............. .......+.|+++++.+++..  .++.+.+|+....+.......      
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------  166 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS------  166 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeE-eccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc------
Confidence             3578999999998876554432211110 111335678899998877664  456788999887665443332      


Q ss_pred             ceEEEEecCCCEE-EEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          164 QIKASFSHDGKYI-VSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       164 ~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                      ..++.++|+++.+ ++.+.|+.+.+|+.............                    ..+.                
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~--------------------~~~~----------------  210 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA--------------------MLTA----------------  210 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee--------------------cccc----------------
Confidence            4467899998765 57788999999998764332211000                    0000                


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEee--c--------cceeceeEEEEcCCCCEEE--
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--Y--------VNVSSQIKASFSHDGKYIV--  310 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~--------~~~~~v~~~~~s~~~~~l~--  310 (408)
                           ........+.+++++.+ +..+.++.+.+|+............  .        ........+++++++..++  
T Consensus       211 -----~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  284 (373)
T d2madh_         211 -----AQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             -----CccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe
Confidence                 00011122233333333 3446677788888776543322111  0        0111223456666666544  


Q ss_pred             --------EecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc--EEE
Q psy988          311 --------SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY--VLV  380 (408)
Q Consensus       311 --------~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~  380 (408)
                              +...++.+.+||..++            +.+..+. +...+.+++|+|                ||+  +++
T Consensus       285 ~~~~~~~~~~~~~~~v~~~d~~t~------------~~~~~~~-~~~~~~~~a~sp----------------DG~~~l~v  335 (373)
T d2madh_         285 TSEQSAWKLHAAAKEVTSVTGLVG------------QTSSQIS-LGHDVDAISVAQ----------------DGGPDLYA  335 (373)
T ss_pred             cCCCceEEeecCCCeEEEEECCCC------------cEEEEec-CCCCeeEEEECC----------------CCCEEEEE
Confidence                    4456678899999886            3444443 567789999999                887  457


Q ss_pred             EEecCCeEEEEeCCCCCCccccc
Q psy988          381 SADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       381 s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      +++.|+.|++||+.+++....++
T Consensus       336 t~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         336 LSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EeCCCCeEEEEECCCCCEEEEEC
Confidence            88999999999999999887765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.5e-21  Score=163.08  Aligned_cols=297  Identities=9%  Similarity=-0.002  Sum_probs=185.4

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecC-----C
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEG-----Q   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~-----~   66 (408)
                      +++|.+||..+++.+.++. .+.+..++||| |+++|++++          .|+.|++||..+++.........     .
T Consensus        27 ~~~v~v~D~~tg~~~~~~~-~g~~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~  104 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMID-GGFLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  104 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEE-ECSSCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             cCeEEEEECCCCcEEEEEE-CCCCCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec
Confidence            4679999999999988876 22334799999 898887643          47899999999988663222111     1


Q ss_pred             ceeeEEEEEecCCCEEEEEe--cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEE
Q psy988           67 TKLITAANFCENGKFAVVGS--YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRL  143 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i  143 (408)
                      ......++|+|++++++.++  .+..+.+|+..+.+............. ........+.+++++..++.. ..++.+.+
T Consensus       105 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~  183 (355)
T d2bbkh_         105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI-FPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  183 (355)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE-EEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE-eecCCcceEEEcCCCCEEEEEecCCCeEEE
Confidence            12335678999999888765  457899999999876655432211000 001233445667777666554 33455566


Q ss_pred             EEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEE
Q psy988          144 YDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVF  223 (408)
Q Consensus       144 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  223 (408)
                      ++.........       ..+....+.+++..++.++.++.+++|++..+......          ....+........+
T Consensus       184 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~  246 (355)
T d2bbkh_         184 THTEVFHPEDE-------FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP----------AVEALTEAERADGW  246 (355)
T ss_dssp             EECCCCSCTTS-------CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC----------CEESSCHHHHHTTE
T ss_pred             Eecccccceec-------ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEe----------ccCCcccceEeeee
Confidence            55544332111       11233567888888999999999999998765322111          01111110011111


Q ss_pred             eCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEec----------CCCeEEEEEcCCCeeeeEEeeccc
Q psy988          224 APCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTS----------NDSRIRLYDLRDLNLSCKYKGYVN  293 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~  293 (408)
                      .|.+                         ...+++++++..++...          ....|.+||..+++.+..+...  
T Consensus       247 ~p~~-------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~--  299 (355)
T d2bbkh_         247 RPGG-------------------------WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--  299 (355)
T ss_dssp             EECS-------------------------SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--
T ss_pred             eccc-------------------------eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC--
Confidence            1111                         11233444555444432          2357999999999988877643  


Q ss_pred             eeceeEEEEcCCCC--EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecC
Q psy988          294 VSSQIKASFSHDGK--YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAP  358 (408)
Q Consensus       294 ~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  358 (408)
                       ..+.+++|+|||+  ++++++.|+.|++||+.++            +.+..+.++...-..+.+.+
T Consensus       300 -~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg------------~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         300 -HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG------------EELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             -EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC------------CEEEEECCCCSSCCEEECCC
T ss_pred             -CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC------------CEEEEEeCcCCCccEEEeCC
Confidence             2467899999998  4567788999999999987            56666766655555565554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2e-21  Score=163.72  Aligned_cols=293  Identities=9%  Similarity=0.009  Sum_probs=187.8

Q ss_pred             ceEEEEEcCCCCCEEEEEe-----CCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe----------cC
Q psy988           24 FVTAICFHPRDDRYFLSGS-----LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS----------YD   88 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d   88 (408)
                      ++.-.+.+| |++.++...     .++.|.+||..+++..  ..+..+.  ...++|+|||++|++.+          .+
T Consensus         3 p~~~~a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~--~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEE--EEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            344446689 888887653     3567999999998866  4554443  34789999999888654          47


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccceeecCcccc-----
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYKGYVNV-----  161 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~-----  161 (408)
                      +.|++||..+.+............ .........++|+|++++++++.  .+..+.+|+..+++....+......     
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPR-FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcce-eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence            899999999988776654432221 12223456789999999988774  4678999999998877666543221     


Q ss_pred             ccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      .....+.++++++.++... .++.+.+++.....                 .                            
T Consensus       157 ~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----------------~----------------------------  191 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----------------P----------------------------  191 (355)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----------------C----------------------------
T ss_pred             CCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----------------c----------------------------
Confidence            0111234444444433322 12222322221100                 0                            


Q ss_pred             CceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeE--Eeecc--------ceeceeEEEEcCCCCEEE
Q psy988          241 STGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCK--YKGYV--------NVSSQIKASFSHDGKYIV  310 (408)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~--------~~~~v~~~~~s~~~~~l~  310 (408)
                             .+...+....+.+++..++.++.++.+++|++..++....  ...+.        .......+++++++..++
T Consensus       192 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~  264 (355)
T d2bbkh_         192 -------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  264 (355)
T ss_dssp             -------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             -------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEE
Confidence                   1112233344556677788889999999999987754321  11110        011223578999999887


Q ss_pred             EecCC----------ceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc--E
Q psy988          311 SGSEN----------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY--V  378 (408)
Q Consensus       311 ~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~--~  378 (408)
                      ....+          ..|.+||..++            +.+..+. +...+.+++|+|                ||+  +
T Consensus       265 ~~~~~~~~~~~~~~~~~v~v~d~~t~------------~~~~~~~-~~~~~~~~a~sp----------------DG~~~l  315 (355)
T d2bbkh_         265 LLVDQRDEWRHKTASRFVVVLDAKTG------------ERLAKFE-MGHEIDSINVSQ----------------DEKPLL  315 (355)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTC------------CEEEEEE-EEEEECEEEECC----------------SSSCEE
T ss_pred             EEeccCCceeecCCCCeEEEEeCCCC------------cEEEEec-CCCCEEEEEEcC----------------CCCeEE
Confidence            65432          47999999886            4444444 345688999999                776  5


Q ss_pred             EEEEecCCeEEEEeCCCCCCccccc
Q psy988          379 LVSADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       379 l~s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      +++++.|+.|++||+.+++....++
T Consensus       316 ~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         316 YALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEe
Confidence            6677889999999999999877664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=3.9e-18  Score=148.95  Aligned_cols=360  Identities=6%  Similarity=0.003  Sum_probs=196.0

Q ss_pred             CceEEEEeccCCeeEeEEE------eCCceEEEEEcCCCCCEEEEEeC---------CCcEEEEecCCCCceeeeeecCC
Q psy988            2 DKTVRLWHISRKECLCCFQ------HIDFVTAICFHPRDDRYFLSGSL---------DGKLRLWNIPDKKVAVWNEVEGQ   66 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~------h~~~v~~~~~sp~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~   66 (408)
                      |+.|.+||+.+++....+.      |...|.++.||| |+++|+.++.         ++.+.+||+.+++..   .+..+
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~---~l~~~  110 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERI  110 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCC
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCccc---ccccC
Confidence            6789999999999887664      457899999999 9999998753         567899999998754   67788


Q ss_pred             ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc----------cccCCCCeEEEeeCCCCCeEEEee
Q psy988           67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG----------KNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                      ...+..+.|||||+++|.. .++.+.+|+..+++............          .....+....+.|+|||++|+...
T Consensus       111 ~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         111 PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            8889999999999999985 57799999998876533221110000          011223456688999999999986


Q ss_pred             CCC-eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCcccccccccc
Q psy988          137 NDS-RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN  215 (408)
Q Consensus       137 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                      .|. .+..|.+........     .......+.+...+.    ...+..+.+|++............. ...........
T Consensus       190 ~d~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~  259 (470)
T d2bgra1         190 FNDTEVPLIEYSFYSDESL-----QYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGD  259 (470)
T ss_dssp             EECTTCCEEEEEECCSTTC-----SSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEEE-ECCCHHHHTSC
T ss_pred             ecCCcCceEEEEeeccCCC-----CCCeeeeeccccccc----cCCcceEEEEECCCcceeeeccccc-cCCccccCCCC
Confidence            543 355555432111000     000111122221221    1223467778776543221110000 00001112233


Q ss_pred             ceEEEEEEeCCcceeeeecCCCCCCCceee--ec------------------------CCCceeeeeccCCCCCeEEEec
Q psy988          216 AVVTCAVFAPCPELIIAQMEPDKSESTGYV--LN------------------------ATGRKISGIEPMPGEDKILVTS  269 (408)
Q Consensus       216 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------------~~~~~i~~~~~~~~~~~l~~~~  269 (408)
                      ..+..+.|.+++..++.............+  ..                        .+........+.+++.+++.+.
T Consensus       260 ~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~  339 (470)
T d2bgra1         260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN  339 (470)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred             ceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEec
Confidence            456677777777655443222111110000  00                        0111111222333344456667


Q ss_pred             CCCeEEEE--EcCCCeeeeEEeeccceeceeEEEEcCCCCEE-EEecCCc----eEEEeeccccCccccccccCccccc-
Q psy988          270 NDSRIRLY--DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-VSGSENQ----CIYIWKTHHDYAKFSSVRRDRNDFW-  341 (408)
Q Consensus       270 ~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~-  341 (408)
                      .+|..+||  +...+... .+...  ...+..+ ++++++.+ +++..++    .-.||.+.-...       ...+++ 
T Consensus       340 ~dg~~~ly~~~~~g~~~~-~lt~g--~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~-------~~~~~lt  408 (470)
T d2bgra1         340 EEGYRHICYFQIDKKDCT-FITKG--TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY-------TKVTCLS  408 (470)
T ss_dssp             TTSCEEEEEEETTCSCCE-ESCCS--SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT-------TCEEESS
T ss_pred             cCcCceeEEEeccCCcee-eeccC--CeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC-------CceeEec
Confidence            77765555  55444333 33221  2234443 34444444 3333322    224555432100       000122 


Q ss_pred             eeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEE---EEecCCeEEEEeCCCCCCccccc
Q psy988          342 EGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLV---SADFNGVIRVFLNKTKPKHSSLP  403 (408)
Q Consensus       342 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~---s~~~dg~v~iw~~~~~~~~~~~~  403 (408)
                      ..+..|...+.+++|||                ||++++   ++...-.+++|+..+++.+..|.
T Consensus       409 ~~~~~~~~~~~s~~fSp----------------dgky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         409 CELNPERCQYYSVSFSK----------------EAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             TTTSTTTBCBEEEEECT----------------TSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECC----------------CCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            23446788899999999                777766   33334457888888877766553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.2e-18  Score=147.03  Aligned_cols=302  Identities=10%  Similarity=-0.068  Sum_probs=180.4

Q ss_pred             eCCceEEEEEcCCCCCEEE---EEeCCCc--EEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe---------
Q psy988           21 HIDFVTAICFHPRDDRYFL---SGSLDGK--LRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS---------   86 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~---t~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------   86 (408)
                      +.++...++..+ +++...   ....++.  |.+||..+++..  ..+..+...  .++|+|||++|++.+         
T Consensus        18 ~~g~~~~~a~~~-~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~--~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGA-ISRRSHITLPAYFAGTTENWVSCAGCGVTL--GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCC-CTTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCC-CCcceeEEeeccCCCcceEEEEeCCCCcEE--EEEeCCCCC--cceECCCCCEEEEEcccCcccccc
Confidence            345555566677 666432   2334455  666688877765  444444433  578999999998765         


Q ss_pred             -cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee-CCCeEEEEEccCcccceeecCccccccc
Q psy988           87 -YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQ  164 (408)
Q Consensus        87 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  164 (408)
                       .|+.|.+||..+.+............ .........++|+|||++++++. .++.+.+||+.+++....+..+...   
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~-~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---  168 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPR-FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---  168 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCS-CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccce-ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---
Confidence             36789999999988776665432211 11122345689999999998885 5799999999999887776543321   


Q ss_pred             eEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCcee
Q psy988          165 IKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY  244 (408)
Q Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
                        ..+......++..+.||.+.+++.............      .....+...+....                      
T Consensus       169 --~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------------  218 (368)
T d1mdah_         169 --HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA------QCTGAQNCSSQAAQ----------------------  218 (368)
T ss_dssp             --CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC------CSCTTSCBCSCCEE----------------------
T ss_pred             --eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec------ccccccccceeecc----------------------
Confidence              112223445666777888888877543221110000      00111111222223                      


Q ss_pred             eecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEe--e--------ccceeceeEEEEcCCCCEEEEecC
Q psy988          245 VLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYK--G--------YVNVSSQIKASFSHDGKYIVSGSE  314 (408)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~--------~~~~~~v~~~~~s~~~~~l~~~~~  314 (408)
                                   +.+++..+..  .++.+.+++...........  .        .........++++|++..++....
T Consensus       219 -------------~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~  283 (368)
T d1mdah_         219 -------------ANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             -------------ETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             -------------cccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEec
Confidence                         3333333332  23344455544433221111  0        001112234688999887765432


Q ss_pred             ---------CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCccc--EEEEEe
Q psy988          315 ---------NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGY--VLVSAD  383 (408)
Q Consensus       315 ---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s~~  383 (408)
                               ...|.+||..++            +.+..+. +...+.+++|+|                ||+  +++++.
T Consensus       284 ~~~~~~~~~~~~v~v~D~~t~------------~~~~~~~-~~~~~~~~a~sp----------------DG~~~ly~s~~  334 (368)
T d1mdah_         284 EHSRSCLAAAENTSSVTASVG------------QTSGPIS-NGHDSDAIIAAQ----------------DGASDNYANSA  334 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSC------------CEEECCE-EEEEECEEEECC----------------SSSCEEEEEET
T ss_pred             CCCceeecCCceEEEEECCCC------------cEeEEec-CCCceeEEEECC----------------CCCEEEEEEeC
Confidence                     236889999887            3444444 445788999999                776  456777


Q ss_pred             cCCeEEEEeCCCCCCccccccc
Q psy988          384 FNGVIRVFLNKTKPKHSSLPVS  405 (408)
Q Consensus       384 ~dg~v~iw~~~~~~~~~~~~~s  405 (408)
                      .|+.|++||..+++....+++.
T Consensus       335 ~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         335 GTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCeEEEEECCCCCEEEEEECC
Confidence            8999999999999988887763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=5.7e-17  Score=136.72  Aligned_cols=270  Identities=9%  Similarity=-0.066  Sum_probs=158.7

Q ss_pred             ceEEEEeccCCeeEeEEE-eCCceEEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCceeeeeecCC-----
Q psy988            3 KTVRLWHISRKECLCCFQ-HIDFVTAICFHPRDDRYFLSGS----------LDGKLRLWNIPDKKVAVWNEVEGQ-----   66 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-----   66 (408)
                      ..|.+||..+++.+..+. +..  ..++|+| |++.|++.+          .|+.|.+||..+++......+..+     
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~--~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFL--SLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTT--CEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             ceEEEEeCCCCcEEEEEeCCCC--CcceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            347777999999998887 443  3689999 899888764          367899999999887632222211     


Q ss_pred             ceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEE
Q psy988           67 TKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYD  145 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  145 (408)
                      ......++|+|||++|+++. .++.+.+||+.+.+..........        ..   .+......++..+.||.+.+++
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~--------~~---~~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC--------FH---IHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC--------CC---CEEEETTEEECCCCTTSCEEEE
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc--------ce---EccCCCceEEEEcCCCCEEEEE
Confidence            12234689999999998876 469999999999887665432211        00   0111233445556677777777


Q ss_pred             ccCcccceeecC----ccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEE
Q psy988          146 LRDLNLSCKYKG----YVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCA  221 (408)
Q Consensus       146 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  221 (408)
                      +...........    ......+....+.+++..+...  .+.+++++...+...........................+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  269 (368)
T d1mdah_         192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             ecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeE
Confidence            654433221111    0111223345677777655544  4556666665433221110000000000000000111123


Q ss_pred             EEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe---------cCCCeEEEEEcCCCeeeeEEeecc
Q psy988          222 VFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT---------SNDSRIRLYDLRDLNLSCKYKGYV  292 (408)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---------~~d~~i~i~d~~~~~~~~~~~~~~  292 (408)
                      ++                                   +|++..+++.         .....|.+||..+++.+..+... 
T Consensus       270 a~-----------------------------------~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-  313 (368)
T d1mdah_         270 AK-----------------------------------LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-  313 (368)
T ss_dssp             EE-----------------------------------ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-
T ss_pred             EE-----------------------------------cCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-
Confidence            33                                   4444443332         12246999999999887776542 


Q ss_pred             ceeceeEEEEcCCCCE--EEEecCCceEEEeecccc
Q psy988          293 NVSSQIKASFSHDGKY--IVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       293 ~~~~v~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~  326 (408)
                        ..+..++|+|||+.  ++++..++.|++||..++
T Consensus       314 --~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         314 --HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             --EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             --CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence              35678999999973  456778999999999987

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.74  E-value=8.7e-18  Score=140.35  Aligned_cols=301  Identities=10%  Similarity=0.032  Sum_probs=181.7

Q ss_pred             CCceEEEEeccCCeeEeEEE-------------------------------eCCceEEEEEcCCCCCEEEEEe-CCCcEE
Q psy988            1 MDKTVRLWHISRKECLCCFQ-------------------------------HIDFVTAICFHPRDDRYFLSGS-LDGKLR   48 (408)
Q Consensus         1 ~Dg~i~vwd~~~~~~~~~~~-------------------------------h~~~v~~~~~sp~~~~~l~t~~-~dg~i~   48 (408)
                      ++|+|+||++.+++.++.+.                               |.-......++| ||++|++.. .++.|.
T Consensus        19 ~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~~~rVa   97 (441)
T d1qnia2          19 HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKANTRVA   97 (441)
T ss_dssp             TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETTTTEEE
T ss_pred             CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCCCCEEE
Confidence            47999999999999888763                               112234455678 898886664 578999


Q ss_pred             EEecCCCCceeeeeecCCceeeEEEEEecCCCE--EEEEecCC-----------------EEEEEeccCCeeeEEEEEee
Q psy988           49 LWNIPDKKVAVWNEVEGQTKLITAANFCENGKF--AVVGSYDG-----------------RCIFYTTDQLKYHTQIHVRS  109 (408)
Q Consensus        49 iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~iw~~~~~~~~~~~~~~~  109 (408)
                      ++|+++++...... ..+...+..++|+|+|+.  ++..+.+.                 .+..+|..+.+...+.... 
T Consensus        98 vIDl~t~k~~~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-  175 (441)
T d1qnia2          98 RIRLDIMKTDKITH-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-  175 (441)
T ss_dssp             EEETTTTEEEEEEE-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-
T ss_pred             EEECCCCcEeeEEe-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-
Confidence            99999988763222 235667899999999984  44444332                 2344666666555444322 


Q ss_pred             ccccccCCCCeEEEeeCCCCCeEEEeeCCC-eEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEe
Q psy988          110 TRGKNATGRKISGIEPMPGEDKILVTSNDS-RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW  188 (408)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  188 (408)
                              .....+.++|+|+++++++.+. .+..++..+.+....+.....   ...+.++|+|+++..++ ++.+.++
T Consensus       176 --------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~---p~~~~~~~dGk~~~v~~-~~v~vvd  243 (441)
T d1qnia2         176 --------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV---ERIAAAVKAGNFKTIGD-SKVPVVD  243 (441)
T ss_dssp             --------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH---HHHHHHHHTTCCBCCTT-CCCCEEE
T ss_pred             --------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc---cceEEEecCCCEEEeCC-CCcEEEE
Confidence                    3577899999999999887643 344444444433322221111   12245678888776653 4556665


Q ss_pred             eeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEE-E
Q psy988          189 KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKIL-V  267 (408)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~  267 (408)
                      +.....            .+..+                                    ..+..+..+.++|||++++ +
T Consensus       244 ~~~~~~------------v~~~I------------------------------------PvgksPhGv~vSPDGkyl~~~  275 (441)
T d1qnia2         244 GRGESE------------FTRYI------------------------------------PVPKNPHGLNTSPDGKYFIAN  275 (441)
T ss_dssp             CSSSCS------------SEEEE------------------------------------CCBSSCCCEEECTTSCEEEEE
T ss_pred             cccCCc------------eEEEE------------------------------------eCCCCccCceECCCCCEEEEe
Confidence            543210            11111                                    1122345667777777765 4


Q ss_pred             ecCCCeEEEEEcCCCee--------eeEEeecc-ceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCcc
Q psy988          268 TSNDSRIRLYDLRDLNL--------SCKYKGYV-NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRN  338 (408)
Q Consensus       268 ~~~d~~i~i~d~~~~~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  338 (408)
                      +..+++|.+||+.+.+.        ...+.++. ........+|+++|+.+.+...|..|..|++......+..  ....
T Consensus       276 ~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~--~~~~  353 (441)
T d1qnia2         276 GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNG--DRVN  353 (441)
T ss_dssp             CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTT--CCCC
T ss_pred             CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhcc--CCCc
Confidence            68899999999875321        11111111 1112344689999999999999999999998643111110  0011


Q ss_pred             ccceee-----eeeccceEEEEecCCchhhhhc
Q psy988          339 DFWEGI-----KAHNAVVTCAVFAPCPELIIAQ  366 (408)
Q Consensus       339 ~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~  366 (408)
                      ..+..+     .+|...+.+.+++|||+||++.
T Consensus       354 ~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         354 YIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             eeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            222222     6888888889999944444433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.65  E-value=2.2e-14  Score=119.70  Aligned_cols=275  Identities=13%  Similarity=0.091  Sum_probs=172.1

Q ss_pred             EEEEeCCCcEEEEecCCCCceeeeee----------------------------cCCceeeEEEEEecCCCEEEEEe-cC
Q psy988           38 FLSGSLDGKLRLWNIPDKKVAVWNEV----------------------------EGQTKLITAANFCENGKFAVVGS-YD   88 (408)
Q Consensus        38 l~t~~~dg~i~iw~~~~~~~~~~~~~----------------------------~~~~~~v~~~~~~~~~~~l~~~~-~d   88 (408)
                      +++++.+|+|++|++.+++.......                            ..|........++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56778899999999987765421110                            11333455566689999986664 67


Q ss_pred             CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEE--eeCCC-----------------eEEEEEccCc
Q psy988           89 GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILV--TSNDS-----------------RIRLYDLRDL  149 (408)
Q Consensus        89 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg-----------------~i~i~d~~~~  149 (408)
                      ++|.++|+++++........       ....+..++|+|+++.+++  .+++.                 .+..+|..+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP-------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP-------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT-------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             CEEEEEECCCCcEeeEEecC-------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            89999999998876554422       2347889999999985433  33321                 2345777777


Q ss_pred             ccceeecCccccccceEEEEecCCCEEEEeecCc-eEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcc
Q psy988          150 NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQ-CIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPE  228 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  228 (408)
                      +...++.....   ...+.++|+|+++++++.+. .+..++..+..                   ....+...       
T Consensus       167 ~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~-------------------~~d~i~v~-------  217 (441)
T d1qnia2         167 DVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRN-------------------DRDWVVVF-------  217 (441)
T ss_dssp             SEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCS-------------------SBCEEEEE-------
T ss_pred             eeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcc-------------------eEEEEEeC-------
Confidence            66655543322   45689999999998887653 22222221110                   00001000       


Q ss_pred             eeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCE
Q psy988          229 LIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  308 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  308 (408)
                                            .....+.++|+|+++.. +.++.+.+++....+....++....   ...+.++|||++
T Consensus       218 ----------------------n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGky  271 (441)
T d1qnia2         218 ----------------------NVERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKY  271 (441)
T ss_dssp             ----------------------EHHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCE
T ss_pred             ----------------------CccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCE
Confidence                                  01223455667776655 4466778887777777777765433   346899999998


Q ss_pred             EE-EecCCceEEEeeccccCccccccccCccccceeeeeec---cceEEEEecCCchhhhhccCCCCCCCcccEEEEEec
Q psy988          309 IV-SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHN---AVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF  384 (408)
Q Consensus       309 l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  384 (408)
                      ++ ++..+++|.+||+......+....    .....+.++.   -.....+|.+                +|+.+.|...
T Consensus       272 l~~~~~~~~tvsv~d~~k~~~~~~~~~----~~~~~~~~~~~~glgplh~~fd~----------------~g~~yts~~~  331 (441)
T d1qnia2         272 FIANGKLSPTVSVIAIDKLDDLFEDKI----ELRDTIVAEPELGLGPLHTTFDG----------------RGNAYTTLFI  331 (441)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHTTTSS----CGGGGEEECCBCCSCEEEEEECS----------------SSEEEEEETT
T ss_pred             EEEeCCcCCcEEEEEeehhhhHhhccC----CcceEEEeecccccCcccceecC----------------CceEEEcccc
Confidence            75 567899999999976432211111    1111122221   1234568888                8999999999


Q ss_pred             CCeEEEEeCC
Q psy988          385 NGVIRVFLNK  394 (408)
Q Consensus       385 dg~v~iw~~~  394 (408)
                      |..|..|++.
T Consensus       332 ds~v~kw~~~  341 (441)
T d1qnia2         332 DSQVCKWNIA  341 (441)
T ss_dssp             TTEEEEEEHH
T ss_pred             cceEEEeccc
Confidence            9999999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=4.7e-14  Score=122.73  Aligned_cols=152  Identities=11%  Similarity=0.113  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceee---eeecCCceeeEEEEEecCCCEEEEEec---------CCEEEE
Q psy988           26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVW---NEVEGQTKLITAANFCENGKFAVVGSY---------DGRCIF   93 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i   93 (408)
                      ..+.|.+ +++++..  .|+.+.+||+.+++....   ..+..|...|.++.|||||++|+.++.         ++.+.+
T Consensus        20 ~~~~W~~-d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          20 YSLRWIS-DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCCEECS-SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cCCEeCC-CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            3578999 8887764  578999999999886521   234456678999999999999998753         567889


Q ss_pred             EeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccc-------------
Q psy988           94 YTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN-------------  160 (408)
Q Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------  160 (408)
                      ||+.+++..      .   ...+...+..+.|+|||+.++... ++.+++|+..+++..+.......             
T Consensus        97 ~d~~~~~~~------~---l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1          97 YDLNKRQLI------T---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             EETTTTEEC------C---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             EECCCCccc------c---cccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeee
Confidence            999987532      1   223456789999999999999965 57899999988876544322111             


Q ss_pred             ---cccceEEEEecCCCEEEEeecCce-EEEeee
Q psy988          161 ---VSSQIKASFSHDGKYIVSGSENQC-IYIWKT  190 (408)
Q Consensus       161 ---~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~  190 (408)
                         ......+.|+|||++|+....|.. +..|++
T Consensus       167 ~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence               112335779999999999876543 555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.55  E-value=2.3e-11  Score=101.29  Aligned_cols=291  Identities=8%  Similarity=-0.036  Sum_probs=157.1

Q ss_pred             ceEEEE--eccCCeeEe--EEE--eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe
Q psy988            3 KTVRLW--HISRKECLC--CFQ--HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC   76 (408)
Q Consensus         3 g~i~vw--d~~~~~~~~--~~~--h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~   76 (408)
                      +.|.++  |.++++...  ...  ....+..|+|+| ++++|.++.. +.+..|.+....................+.++
T Consensus        14 ~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~   91 (365)
T d1jofa_          14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDAD   91 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC
Confidence            345554  555655432  222  555678899999 8988887764 67888877653322111111112334567788


Q ss_pred             cCCCEEE--EEe-cCCEEEEEeccCCe------------eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC-CCe
Q psy988           77 ENGKFAV--VGS-YDGRCIFYTTDQLK------------YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN-DSR  140 (408)
Q Consensus        77 ~~~~~l~--~~~-~dg~i~iw~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~  140 (408)
                      ++++.++  ++. ..+.+..+.+....            .........   .......+.++.|+|++++++++.. ...
T Consensus        92 ~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~q~~~h~h~v~~sPdG~~l~v~d~g~d~  168 (365)
T d1jofa_          92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY---EYQENTGIHGMVFDPTETYLYSADLTANK  168 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE---ECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCc---ccCCCCcceEEEECCCCCEEEEeeCCCCE
Confidence            8888543  332 23555554433211            111110111   1112235789999999999988854 457


Q ss_pred             EEEEEccCcccce---eecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          141 IRLYDLRDLNLSC---KYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       141 i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      |.+|+......+.   .............++|+|+++++++.. .+++|.+|++........                 .
T Consensus       169 v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~-----------------~  231 (365)
T d1jofa_         169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV-----------------Y  231 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-----------------E
T ss_pred             EEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEE-----------------E
Confidence            8888765432221   122222234567899999999886655 478999999865321110                 0


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC------CCeEEEEEcCCCeeeeEE--
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKY--  288 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~--  288 (408)
                      .+..+.+.+.+           .................+.++|+|++|+++..      .+.|..|++.....+...  
T Consensus       232 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         232 THHSFPLIPPG-----------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EEEEEESSCTT-----------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             Eeeeecccccc-----------ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            00111111000           00000001122334556677778887777532      234777777643222211  


Q ss_pred             --eeccceeceeEEEEcC-CCCEEEEe-cCCceEEEeecccc
Q psy988          289 --KGYVNVSSQIKASFSH-DGKYIVSG-SENQCIYIWKTHHD  326 (408)
Q Consensus       289 --~~~~~~~~v~~~~~s~-~~~~l~~~-~~dg~i~iw~~~~~  326 (408)
                        ...........++++| +|++|+++ ..++.|.+|+++..
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              1111222445789998 89988766 46789999998653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=5.4e-11  Score=96.38  Aligned_cols=248  Identities=11%  Similarity=0.026  Sum_probs=155.7

Q ss_pred             cCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCE
Q psy988           11 SRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGR   90 (408)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   90 (408)
                      ...+.+..+.-...+..++++| ||+++++...+++|..|+.... ..   .+......+.+++|.++|+++++...++.
T Consensus        16 ~~~~v~~~~p~~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~-~~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          16 APAKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQ---IHATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CCEEEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EE---EEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcccEEEECCCCCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC-EE---EEEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            3345555555444688999999 9999999988999998886543 32   33445567899999999999888888888


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC--------ccccc
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG--------YVNVS  162 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~  162 (408)
                      +..++..............     ........+.+.++++.+++-+.++.+..+|...+........        .....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~-----~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLTL-----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             CEEEEEECTTSCEEEEEEC-----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEEEEecccccceeecccc-----CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccc
Confidence            8888876543322221111     1234678999999998888778888898888876543221111        11112


Q ss_pred             cceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCc
Q psy988          163 SQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSEST  242 (408)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
                      ....+.++. +..+++.+..+.|+.++........                 .....                       
T Consensus       166 ~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~-----------------------  204 (302)
T d2p4oa1         166 AANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----------------EPEIF-----------------------  204 (302)
T ss_dssp             SEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBC-----------------CCEEE-----------------------
T ss_pred             ccccccccC-CceeeecCCCCeEEecccccccccc-----------------ccccc-----------------------
Confidence            233444432 2334445566777777764321100                 00000                       


Q ss_pred             eeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEE---cCCCCEEEEecCC
Q psy988          243 GYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF---SHDGKYIVSGSEN  315 (408)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  315 (408)
                           .....+..++++++|+++++...++.|..++.. ++..............++++|   ++|++.|++++..
T Consensus       205 -----~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         205 -----VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----cCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                 011234567888888888887888999999765 444334433333345678999   6788888765443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.48  E-value=2.2e-10  Score=95.25  Aligned_cols=289  Identities=11%  Similarity=0.071  Sum_probs=157.0

Q ss_pred             EEEEeC--CCcEEEEecCC--CCceeeee-ecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc
Q psy988           38 FLSGSL--DGKLRLWNIPD--KKVAVWNE-VEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG  112 (408)
Q Consensus        38 l~t~~~--dg~i~iw~~~~--~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  112 (408)
                      |+.|+.  .+.|..+.++.  +.+..... .......+..|+|+|++++|+++.. +.+..|.+.............   
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~---   80 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP---   80 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE---
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec---
Confidence            556643  45676655544  33322222 2234445677999999999988764 568888776433222221111   


Q ss_pred             cccCCCCeEEEeeCCCCCeEEEee---CCCeEEEEEccCcc-c-----------c-eeec--CccccccceEEEEecCCC
Q psy988          113 KNATGRKISGIEPMPGEDKILVTS---NDSRIRLYDLRDLN-L-----------S-CKYK--GYVNVSSQIKASFSHDGK  174 (408)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~-~-----------~-~~~~--~~~~~~~~~~~~~~~~~~  174 (408)
                         .......+.++++++.+++..   ..+.+..+.+.... .           . ....  .......+.++.|+|+|+
T Consensus        81 ---~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~  157 (365)
T d1jofa_          81 ---IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             ---CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             ---CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCC
Confidence               112456778888888543322   24556555442211 0           0 0000  001122356799999999


Q ss_pred             EEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCcee
Q psy988          175 YIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKI  253 (408)
Q Consensus       175 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (408)
                      ++++++. ...|.+|+........                   .+..+.                       ....+..+
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~~-------------------~~~~~~-----------------------~~~~g~gP  195 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEVE-------------------LVGSVD-----------------------APDPGDHP  195 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEE-------------------EEEEEE-----------------------CSSTTCCE
T ss_pred             EEEEeeCCCCEEEEEEccCCCcee-------------------ecccee-----------------------ecCCCCce
Confidence            9888764 3478888764321110                   000000                       00223456


Q ss_pred             eeeccCCCCCeEEE-ecCCCeEEEEEcCCCeeeeEEeec-----------------cceeceeEEEEcCCCCEEEEecC-
Q psy988          254 SGIEPMPGEDKILV-TSNDSRIRLYDLRDLNLSCKYKGY-----------------VNVSSQIKASFSHDGKYIVSGSE-  314 (408)
Q Consensus       254 ~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~-----------------~~~~~v~~~~~s~~~~~l~~~~~-  314 (408)
                      ..++|+|+++++++ ...+++|.+|++...+........                 ........+.++|||++|+++.. 
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            66777777776655 456789999998765433221110                 01122446899999999988642 


Q ss_pred             -----CceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEE-ecCCeE
Q psy988          315 -----NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSA-DFNGVI  388 (408)
Q Consensus       315 -----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v  388 (408)
                           .+.|..|++........      ...+...........+++++|.               +|++|+.+ ..++.|
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~------~~~~~~~~~~G~~p~~i~~~p~---------------~G~~l~va~~~s~~v  334 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEK------QLFLSPTPTSGGHSNAVSPCPW---------------SDEWMAITDDQEGWL  334 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEE------EEEEEECSSCCTTCCCEEECTT---------------CTTEEEEECSSSCEE
T ss_pred             CCCccceEEEEEEecCCCceee------EeEeeEEEcCCCCccEEEecCC---------------CCCEEEEEeCCCCeE
Confidence                 23477777664311000      0011111112234567899873               67777665 567999


Q ss_pred             EEEeCCCC
Q psy988          389 RVFLNKTK  396 (408)
Q Consensus       389 ~iw~~~~~  396 (408)
                      .+|++...
T Consensus       335 ~v~~~~~~  342 (365)
T d1jofa_         335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            99987544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.7e-10  Score=91.93  Aligned_cols=233  Identities=12%  Similarity=0.117  Sum_probs=130.0

Q ss_pred             cEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCC---EEEEEeccCCeeeEEEEEeeccccccCCCCeEE
Q psy988           46 KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDG---RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG  122 (408)
Q Consensus        46 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~  122 (408)
                      .|.|.|.+.....   .+..+...+...+|||||+.||......   .+.+.+..........         .+......
T Consensus        20 ~l~i~d~dG~~~~---~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~   87 (269)
T d2hqsa1          20 ELRVSDYDGYNQF---VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---------SFPRHNGA   87 (269)
T ss_dssp             EEEEEETTSCSCE---EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------CCSSCEEE
T ss_pred             EEEEEcCCCCCcE---EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe---------eeeccccc
Confidence            5777787766655   3444456688999999999999765543   4666666655433221         12346788


Q ss_pred             EeeCCCCCeEEEeeC-CCeEEEEEcc--CcccceeecCccccccceEEEEecCCCEEEEe-ecCceEEEe--eeccceee
Q psy988          123 IEPMPGEDKILVTSN-DSRIRLYDLR--DLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIW--KTHHDYAK  196 (408)
Q Consensus       123 ~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~--d~~~~~~~  196 (408)
                      ..|+|++..++.... .+...++...  ..........   ........++++++.++.. ..+|...+|  ++....  
T Consensus        88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--  162 (269)
T d2hqsa1          88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--  162 (269)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--
T ss_pred             ceecCCCCeeeEeeecCCccceeecccccccceeeeec---cccccccccccccccceecccccCCceEeeeeccccc--
Confidence            899999999887643 3333333332  2222221111   1122334566766655443 345544444  433211  


Q ss_pred             eeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC-CC--e
Q psy988          197 FSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN-DS--R  273 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~  273 (408)
                                 ...............                                   ++|+++.++..+. .+  .
T Consensus       163 -----------~~~~~~~~~~~~~~~-----------------------------------~spdg~~~~~~~~~~~~~~  196 (269)
T d2hqsa1         163 -----------PQRITWEGSQNQDAD-----------------------------------VSSDGKFMVMVSSNGGQQH  196 (269)
T ss_dssp             -----------CEECCCSSSEEEEEE-----------------------------------ECTTSSEEEEEEECSSCEE
T ss_pred             -----------ceeeecccccccccc-----------------------------------cccccceeEEEeecCCcee
Confidence                       011122223333344                                   4455555554433 33  4


Q ss_pred             EEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecC---CceEEEeeccccCccccccccCccccceeeeeeccc
Q psy988          274 IRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  350 (408)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  350 (408)
                      +.+.+...+..  ......  .......|||||++|+..+.   ...|+++++..+             ....+....+.
T Consensus       197 i~~~~~~~~~~--~~~~~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~-------------~~~~lt~~~g~  259 (269)
T d2hqsa1         197 IAKQDLATGGV--QVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-------------FKARLPATDGQ  259 (269)
T ss_dssp             EEEEETTTCCE--EECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-------------CEEECCCSSSE
T ss_pred             eeEeecccccc--eEeecC--ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC-------------CEEEEeCCCCc
Confidence            55555554433  222222  24456799999999885443   357889998875             23445556677


Q ss_pred             eEEEEecC
Q psy988          351 VTCAVFAP  358 (408)
Q Consensus       351 v~~~~~~~  358 (408)
                      +...+|||
T Consensus       260 ~~~p~WSP  267 (269)
T d2hqsa1         260 VKFPAWSP  267 (269)
T ss_dssp             EEEEEECC
T ss_pred             EEeEEeCC
Confidence            88999999

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-10  Score=98.14  Aligned_cols=357  Identities=11%  Similarity=0.070  Sum_probs=187.9

Q ss_pred             CceEEEEeccCCeeEeEEE----eCCceEEEEEcCCCCCEEEEEe---------CCCcEEEEecCCCCceeeeeecCCce
Q psy988            2 DKTVRLWHISRKECLCCFQ----HIDFVTAICFHPRDDRYFLSGS---------LDGKLRLWNIPDKKVAVWNEVEGQTK   68 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~----h~~~v~~~~~sp~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~   68 (408)
                      ||.|.+||+.+++....+.    ..-.+....||| |+++++...         ..+.+.++|+.++....+........
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            6789999999888766555    234678889999 899887764         34778999999988764433444455


Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccc----------cccCCCCeEEEeeCCCCCeEEEeeC-
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRG----------KNATGRKISGIEPMPGEDKILVTSN-  137 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~-  137 (408)
                      .+....|||||+.+|-.. ++.|.+.+..++.............          .....+.-.++.|+|||++|+.... 
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            566788999999998875 6788888887665433221110000          0000112356789999999998743 


Q ss_pred             CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccce
Q psy988          138 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAV  217 (408)
Q Consensus       138 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (408)
                      +..+..+.+....      . .....+..+.+..-|..-    ....+.++|+..+........      ..........
T Consensus       194 ~s~V~~~~~~~~~------~-~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~------~~~~~~~~~y  256 (465)
T d1xfda1         194 DSRVPIMELPTYT------G-SIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMP------PDDPRMREYY  256 (465)
T ss_dssp             CTTSCEEEECCCS------S-SSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCC------CCCGGGSSEE
T ss_pred             ccccceeeccccc------c-cccceeeeeeccccCCCC----CceeEEEEecCCCcEEEEEec------cCcCccccce
Confidence            4445555443210      0 000111222222222110    112577777765433221111      0112233445


Q ss_pred             EEEEEEeCCcceeeeecCCCCCCCceeeecCC------------Ccee----eeeccCCCCCeEEE---ecCC--CeEEE
Q psy988          218 VTCAVFAPCPELIIAQMEPDKSESTGYVLNAT------------GRKI----SGIEPMPGEDKILV---TSND--SRIRL  276 (408)
Q Consensus       218 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i----~~~~~~~~~~~l~~---~~~d--~~i~i  276 (408)
                      +..+.|+|+++.++..................            ...|    ....|+|+|+.++.   ...+  +.+..
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~  336 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence            77889999988666544333322222222111            1111    23567888885432   2222  23444


Q ss_pred             EEcC------CCeeeeEEeeccceeceeE-EEEcCCCCEEE-EecCC--ceEEEeeccccCccccccccCccccceeeee
Q psy988          277 YDLR------DLNLSCKYKGYVNVSSQIK-ASFSHDGKYIV-SGSEN--QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKA  346 (408)
Q Consensus       277 ~d~~------~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~-~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  346 (408)
                      +++.      .++....+..  +.-.|.. +.|+++++.|. ++..+  +.-++|.+......       ..+++.....
T Consensus       337 ~~~~~~~~~~~~~~~~~LT~--G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~-------~~~~lt~~~~  407 (465)
T d1xfda1         337 ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-------NRQCLSCDLV  407 (465)
T ss_dssp             EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-------CCBCSSTTSS
T ss_pred             EEeccccccCCCceeEEecc--CCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC-------cceeeccccC
Confidence            4332      1222222221  1223344 36888877664 44433  23456655432110       0112221112


Q ss_pred             eccceEEEEecCCchhhhhccCCCCCCCcccEEEEEec---CCeEEEEeCCCCCCcccc
Q psy988          347 HNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADF---NGVIRVFLNKTKPKHSSL  402 (408)
Q Consensus       347 h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~  402 (408)
                      ......++.|||                ++++++....   --.+.+++..+++.+..|
T Consensus       408 ~~~~~~~~~~S~----------------~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L  450 (465)
T d1xfda1         408 ENCTYFSASFSH----------------SMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (465)
T ss_dssp             SSCCCCEEEECT----------------TSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEECC----------------CCCEEEEEeecCCCCeEEEEECCCCCEEEEE
Confidence            344567899999                6666663322   234667776666655444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.41  E-value=1.1e-10  Score=94.64  Aligned_cols=230  Identities=10%  Similarity=0.032  Sum_probs=138.9

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccC
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRD  148 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  148 (408)
                      .+..+++.|||+++++...+++|..|+....... .   .      .....+.+++|.++++.+++...++.+..++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~-~---~------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-H---A------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-E---E------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE-E---E------cCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            5788999999999999988999999886654221 1   1      1224789999999999888888888888888765


Q ss_pred             cccc-eeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCc
Q psy988          149 LNLS-CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCP  227 (408)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  227 (408)
                      .... ..+...........+++.++++++++.+.++.+..++...+............  ........            
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------  164 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA--RSNSESVF------------  164 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS--CSSTTCCS------------
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc--eeeccCcc------------
Confidence            4322 12222222334667889999998888888888888887654322110000000  00000001            


Q ss_pred             ceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCC
Q psy988          228 ELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGK  307 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  307 (408)
                                             .....+.++. +..+++.+..+.|..++.....................++++++|+
T Consensus       165 -----------------------~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~  220 (302)
T d2p4oa1         165 -----------------------PAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN  220 (302)
T ss_dssp             -----------------------CSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC
T ss_pred             -----------------------cccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC
Confidence                                   1122222221 2234556778889988877644322211111122345689999999


Q ss_pred             EEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEec
Q psy988          308 YIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA  357 (408)
Q Consensus       308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  357 (408)
                      +.++...++.|..++.....           ..+......-...++++|.
T Consensus       221 l~va~~~~~~V~~i~p~G~~-----------~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         221 LYGATHIYNSVVRIAPDRST-----------TIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             EEEECBTTCCEEEECTTCCE-----------EEEECGGGTCTTEEEEEEC
T ss_pred             EEEEEcCCCcEEEECCCCCE-----------EEEEecCCCCCCceEEEEc
Confidence            88888888999998775431           1122222233457899994

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.1e-09  Score=86.97  Aligned_cols=172  Identities=15%  Similarity=0.115  Sum_probs=105.1

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCC---cEEEEecCCCCceeeeeecCCceeeEEEEEecCCC
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDG---KLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGK   80 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (408)
                      .|.|.|.+.......+.+...+.+.+||| ||+.||......   .+.+.+..++...   .+..+........|+|+|+
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCcee---EEeeeecccccceecCCCC
Confidence            58888998888888888999999999999 999998765533   3666676666543   4555677788899999999


Q ss_pred             EEEEEecC-CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCC--eEEEEEccCcccceeec
Q psy988           81 FAVVGSYD-GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDS--RIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        81 ~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~  156 (408)
                      .++..... +...++............       ...........+++++..++.. ..++  .|...++..+...... 
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-  167 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQV-------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-  167 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEEC-------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-
T ss_pred             eeeEeeecCCccceeecccccccceee-------eeccccccccccccccccceecccccCCceEeeeecccccceeee-
Confidence            98876543 222222222211111100       0111233445566766655554 3344  4555666554433222 


Q ss_pred             CccccccceEEEEecCCCEEEEeecCc-eEEEee
Q psy988          157 GYVNVSSQIKASFSHDGKYIVSGSENQ-CIYIWK  189 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d  189 (408)
                      ..  ........++|+++.++..+.++ ...+|.
T Consensus       168 ~~--~~~~~~~~~spdg~~~~~~~~~~~~~~i~~  199 (269)
T d2hqsa1         168 WE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAK  199 (269)
T ss_dssp             CS--SSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             cc--cccccccccccccceeEEEeecCCceeeeE
Confidence            21  22344578999999988776544 444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.36  E-value=2.3e-09  Score=86.85  Aligned_cols=259  Identities=12%  Similarity=0.113  Sum_probs=148.6

Q ss_pred             eEEEEEecCCCEEEEEec-------CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEE
Q psy988           70 ITAANFCENGKFAVVGSY-------DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIR  142 (408)
Q Consensus        70 v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  142 (408)
                      ...++|.++|++.++...       +|+|..||..+...........    ....+....+.|.++++.++++...+.|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~----~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV----NGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE----TTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcc----ccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            466789999997776432       4678889988765432221111    11112467899999999888888777888


Q ss_pred             EEEccCcccceeecCcc--ccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEE
Q psy988          143 LYDLRDLNLSCKYKGYV--NVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTC  220 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (408)
                      .++..............  ....+..+++.++|+..++-. .+....++...                 ........+  
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~-~~~~~~~~~~~-----------------~~~~~~G~v--  155 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTR-----------------SMQEKFGSI--  155 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCB-----------------TTSSSCEEE--
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecC-ccCcccccccc-----------------eeccCCceE--
Confidence            89987543222111111  112245688888887655532 12111111100                 000111111  


Q ss_pred             EEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCC-----eEEEecCCCeEEEEEcCCCeeeeE---Eeec-
Q psy988          221 AVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGED-----KILVTSNDSRIRLYDLRDLNLSCK---YKGY-  291 (408)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~---~~~~-  291 (408)
                      ..+.|+++.....              ..-.....++|+|++.     ++++-+..+.|..||+.....+..   +... 
T Consensus       156 ~~~~~dg~~~~~~--------------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~  221 (314)
T d1pjxa_         156 YCFTTDGQMIQVD--------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             EEECTTSCEEEEE--------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             EEEeecCceeEee--------------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc
Confidence            1233443322110              1112234566766654     344457788999998764322211   1111 


Q ss_pred             -cceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeeeeeccceEEEEecCCchhhhhccCCC
Q psy988          292 -VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPD  370 (408)
Q Consensus       292 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  370 (408)
                       ......-.+++.++|++.++....+.|.+|+...+            ..+..+.......++++|.|            
T Consensus       222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g------------~~~~~i~~p~~~~t~~afg~------------  277 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG------------QPKMRIRCPFEKPSNLHFKP------------  277 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB------------SCSEEEECSSSCEEEEEECT------------
T ss_pred             ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC------------EEEEEEECCCCCEEEEEEeC------------
Confidence             01112346899999998888777899999998765            33444554556788999999            


Q ss_pred             CCCCccc-EEEEEecCCeEEEEeCC
Q psy988          371 KSESTGY-VLVSADFNGVIRVFLNK  394 (408)
Q Consensus       371 ~~s~~~~-~l~s~~~dg~v~iw~~~  394 (408)
                          |++ ++++.+.+|.|...+++
T Consensus       278 ----d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         278 ----QTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ----TSSEEEEEETTTTEEEEEECS
T ss_pred             ----CCCEEEEEECCCCcEEEEECC
Confidence                775 56777778988888864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=6.1e-10  Score=87.89  Aligned_cols=241  Identities=7%  Similarity=0.033  Sum_probs=145.7

Q ss_pred             eCCceEEEEEcCCCCCEEEEE-eCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCC
Q psy988           21 HIDFVTAICFHPRDDRYFLSG-SLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQL   99 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   99 (408)
                      +.-.-..+++++ +|+++++. +..+.+..++........ ....+ ......++++++|+.+++....+.+++++-.+.
T Consensus        12 ~~~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          12 FRLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             SCCCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEE-CCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CcCCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEE-eccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            445568999999 88866654 445777777765543321 12222 234577889999987777666666666654443


Q ss_pred             eeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe
Q psy988          100 KYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG  179 (408)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (408)
                      ...     ...    .......++++.++++.+++-..+..+..++........  ...........++++++++.+++.
T Consensus        89 ~~~-----~~~----~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~~~v~~  157 (260)
T d1rwia_          89 QTV-----LPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTD  157 (260)
T ss_dssp             CEE-----CCC----CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE--CCCCSCCSCCEEEECTTCCEEEEE
T ss_pred             eee-----eee----eeeeecccccccccceeEeeccccccccccccccceeee--eeecccCCcceeeecCCCCEeeec
Confidence            321     111    112357889999988877766666677777765433222  111222335578899999988877


Q ss_pred             ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccC
Q psy988          180 SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPM  259 (408)
Q Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (408)
                      ..++.|..++........             +.                                  ...-..+..+++.
T Consensus       158 ~~~~~i~~~d~~~~~~~~-------------~~----------------------------------~~~~~~p~gi~~d  190 (260)
T d1rwia_         158 TDNNRVVKLEAESNNQVV-------------LP----------------------------------FTDITAPWGIAVD  190 (260)
T ss_dssp             GGGTEEEEECTTTCCEEE-------------CC----------------------------------CSSCCSEEEEEEC
T ss_pred             cccccccccccccceeee-------------ee----------------------------------ccccCCCccceee
Confidence            778888888865321110             00                                  0112234567777


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          260 PGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       260 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      ++|+++++....+.|..++..... ...+ ..........++++++|+++++-..++.|+.++..
T Consensus       191 ~~g~l~vsd~~~~~i~~~~~~~~~-~~~~-~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         191 EAGTVYVTEHNTNQVVKLLAGSTT-STVL-PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TTCCEEEEETTTTEEEEECTTCSC-CEEC-CCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eeeeeeeeecCCCEEEEEeCCCCe-EEEE-ccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            778777777788888888765432 2222 22222345689999999888776667777665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1e-08  Score=81.67  Aligned_cols=249  Identities=8%  Similarity=0.134  Sum_probs=151.5

Q ss_pred             eeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCe-EEEe-eCCCeEEEEEc
Q psy988           69 LITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDK-ILVT-SNDSRIRLYDL  146 (408)
Q Consensus        69 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~~dg~i~i~d~  146 (408)
                      ....++++++|+.+++-..+..|++||.+. +......  ..............+++.++... +++. +.++.|..++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFG--ECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEEC--CBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEec--ccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            467899999999888777788999999764 3332221  11111111223455565555443 3333 34567777775


Q ss_pred             cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      . ++....+... .......+++.++++.+++....+.+.+++.....             +..+            .  
T Consensus       101 ~-g~~~~~~~~~-~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-------------~~~~------------g--  151 (279)
T d1q7fa_         101 Y-GQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-------------LHKF------------G--  151 (279)
T ss_dssp             T-SCEEEEECTT-TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-------------EEEE------------E--
T ss_pred             c-ccceeecCCC-cccccceeccccCCcEEEEeeccceeeEeccCCce-------------eecc------------c--
Confidence            4 4444444221 22335567888888877776666667666643210             0000            0  


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  306 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  306 (408)
                                         ...+...+..+++.+++..+++....+.|++||.. ++.+.++...........++++++|
T Consensus       152 -------------------~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G  211 (279)
T d1q7fa_         152 -------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG  211 (279)
T ss_dssp             -------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC
T ss_pred             -------------------ccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCC
Confidence                               00122344556667777777777888999999965 6666666433333356789999999


Q ss_pred             CEEEEecC-CceEEEeeccccCccccccccCccccceeeeee--ccceEEEEecCCchhhhhccCCCCCCCcccEEEEEe
Q psy988          307 KYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAH--NAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSAD  383 (408)
Q Consensus       307 ~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  383 (408)
                      +.+++-.. ++.|.+|+...             +.+..+...  ......+++.|                ||+++++ +
T Consensus       212 ~i~Vad~~~~~~v~~f~~~G-------------~~~~~~~~~~~~~~p~~vav~~----------------dG~l~V~-~  261 (279)
T d1q7fa_         212 EILIADNHNNFNLTIFTQDG-------------QLISALESKVKHAQCFDVALMD----------------DGSVVLA-S  261 (279)
T ss_dssp             CEEEEECSSSCEEEEECTTS-------------CEEEEEEESSCCSCEEEEEEET----------------TTEEEEE-E
T ss_pred             eEEEEECCCCcEEEEECCCC-------------CEEEEEeCCCCCCCEeEEEEeC----------------CCcEEEE-e
Confidence            97777543 45799998543             233333221  23467899999                8876554 5


Q ss_pred             cCCeEEEEeCCCCCCc
Q psy988          384 FNGVIRVFLNKTKPKH  399 (408)
Q Consensus       384 ~dg~v~iw~~~~~~~~  399 (408)
                      .+.+|++|+.......
T Consensus       262 ~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         262 KDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             TTTEEEEEECSCCCCT
T ss_pred             CCCeEEEEEeeeecCC
Confidence            7899999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=1.1e-09  Score=86.27  Aligned_cols=238  Identities=8%  Similarity=0.002  Sum_probs=141.6

Q ss_pred             eeeEEEEEecCCCEEEEE-ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEc
Q psy988           68 KLITAANFCENGKFAVVG-SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDL  146 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  146 (408)
                      .....+++.++|+..++. +..+.+..++........    ...    ........++++++++.+++....+.+++++.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~----~~~----~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~   85 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----LPF----NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG   85 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE----CCC----CSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE----ecc----CCccCceEEEEcCCCCEEEeeeeeceeeeeee
Confidence            346889999999966654 445777777665433211    111    11124577899999887666666666666554


Q ss_pred             cCcccceeecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCC
Q psy988          147 RDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPC  226 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (408)
                      .+........   ....+..+++.++++++++-..+..+..++.........           .                
T Consensus        86 ~~~~~~~~~~---~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~-----------~----------------  135 (260)
T d1rwia_          86 SNNQTVLPFD---GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-----------P----------------  135 (260)
T ss_dssp             CSCCEECCCC---SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC-----------C----------------
T ss_pred             ccceeeeeee---eeeecccccccccceeEeeccccccccccccccceeeee-----------e----------------
Confidence            4443332222   223456788989888776655555566665432110000           0                


Q ss_pred             cceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCC
Q psy988          227 PELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDG  306 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  306 (408)
                                          ......+..++++++++.+++...++.|..+|....... .+.. ........++++++|
T Consensus       136 --------------------~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~p~gi~~d~~g  193 (260)
T d1rwia_         136 --------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPF-TDITAPWGIAVDEAG  193 (260)
T ss_dssp             --------------------CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCC-SSCCSEEEEEECTTC
T ss_pred             --------------------ecccCCcceeeecCCCCEeeeccccccccccccccceee-eeec-cccCCCccceeeeee
Confidence                                001123345677777777777788889999997754332 2221 122345689999999


Q ss_pred             CEEEEecCCceEEEeeccccCccccccccCccccceee-eeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecC
Q psy988          307 KYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGI-KAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFN  385 (408)
Q Consensus       307 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  385 (408)
                      +++++....+.|..++......             ..+ ...-.....|++++                +|+++++-..+
T Consensus       194 ~l~vsd~~~~~i~~~~~~~~~~-------------~~~~~~~~~~P~~i~~d~----------------~g~l~vad~~~  244 (260)
T d1rwia_         194 TVYVTEHNTNQVVKLLAGSTTS-------------TVLPFTGLNTPLAVAVDS----------------DRTVYVADRGN  244 (260)
T ss_dssp             CEEEEETTTTEEEEECTTCSCC-------------EECCCCSCCCEEEEEECT----------------TCCEEEEEGGG
T ss_pred             eeeeeecCCCEEEEEeCCCCeE-------------EEEccCCCCCeEEEEEeC----------------CCCEEEEECCC
Confidence            9988888888888887655311             111 11223457899999                88888887777


Q ss_pred             CeEEEEeCC
Q psy988          386 GVIRVFLNK  394 (408)
Q Consensus       386 g~v~iw~~~  394 (408)
                      ++|+..+..
T Consensus       245 ~rI~~i~~~  253 (260)
T d1rwia_         245 DRVVKLTSL  253 (260)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEeCC
Confidence            766655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=7.6e-09  Score=82.38  Aligned_cols=242  Identities=11%  Similarity=0.178  Sum_probs=155.4

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec------CCceeeEEEEEecC-CCEEEEE-ecCCEEEEEe
Q psy988           24 FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE------GQTKLITAANFCEN-GKFAVVG-SYDGRCIFYT   95 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iw~   95 (408)
                      ....++++| +++++++-..+..|++||.+ ++..  ..+.      +.......+++.++ +..+++. +.++.|..++
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEE--EEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            468999999 89988887778899999965 3333  1221      11223445555554 3344433 3446777777


Q ss_pred             ccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988           96 TDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      ..... .....       .........+++.+++..+++....+.+.+++.. ++.+..+...........+++.++++.
T Consensus       100 ~~g~~-~~~~~-------~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i  170 (279)
T d1q7fa_         100 QYGQF-VRKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI  170 (279)
T ss_dssp             TTSCE-EEEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             ccccc-eeecC-------CCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeE
Confidence            65332 21111       1122457788999999888877777888888864 455555544444445667888999988


Q ss_pred             EEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeee
Q psy988          176 IVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISG  255 (408)
Q Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  255 (408)
                      +++....+.|++||.....             +..            +...                     .....+..
T Consensus       171 ~v~d~~~~~V~~~d~~G~~-------------~~~------------~g~~---------------------g~~~~P~g  204 (279)
T d1q7fa_         171 FISDNRAHCVKVFNYEGQY-------------LRQ------------IGGE---------------------GITNYPIG  204 (279)
T ss_dssp             EEEEGGGTEEEEEETTCCE-------------EEE------------ESCT---------------------TTSCSEEE
T ss_pred             EeeeccccceeeeecCCce-------------eee------------eccc---------------------ccccCCcc
Confidence            8888888889998864211             000            0000                     12234567


Q ss_pred             eccCCCCCeEEEec-CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeecccc
Q psy988          256 IEPMPGEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHD  326 (408)
Q Consensus       256 ~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  326 (408)
                      +++.++|+.+++-. .++.|.+|+ .+++.+..+...........+++.|||+++++ +.++.|++|.....
T Consensus       205 iavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         205 VGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             cccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            77888888666644 455799998 45888777765544445678999999976554 57899999998764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.31  E-value=8.3e-09  Score=83.46  Aligned_cols=254  Identities=8%  Similarity=0.049  Sum_probs=152.0

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeC-------CCcEEEEecCCCCceeeeee--cCCceeeEEEEEecCCCEEEEEecCCEE
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSL-------DGKLRLWNIPDKKVAVWNEV--EGQTKLITAANFCENGKFAVVGSYDGRC   91 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i   91 (408)
                      .-.....++|.| +|+++++...       +|+|..||..++........  .........+.|.++++.++++...+.+
T Consensus        16 ~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             CCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            334567789999 8887776432       46799999888765432211  1112346789999999988888877888


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC---------------CCeEEEEEccCcccceeec
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN---------------DSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~  156 (408)
                      ..++.+.......  .....+  ..-...+.+++.++|+..++-..               .|.|..++.. ++......
T Consensus        95 ~~~~~~g~~~~~~--~~~~~g--~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~  169 (314)
T d1pjxa_          95 LVVQTDGTFEEIA--KKDSEG--RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEETTSCEEECC--SBCTTS--CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             EEEeCCCcEEEEE--eccccc--cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC
Confidence            8888776532210  000000  00123577899999877666321               2344444432 23222221


Q ss_pred             CccccccceEEEEecCCC----EEE-EeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceee
Q psy988          157 GYVNVSSQIKASFSHDGK----YIV-SGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELII  231 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~----~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  231 (408)
                      .   ......++|+++++    +|+ +-+..+.|+.||+........                    ..+.....     
T Consensus       170 ~---~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~--------------------~~~~~~~~-----  221 (314)
T d1pjxa_         170 A---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--------------------KKVWGHIP-----  221 (314)
T ss_dssp             E---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--------------------EEEEEECC-----
T ss_pred             C---cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce--------------------eeEEEEcc-----
Confidence            1   12245688888764    344 445677888887643211100                    00000000     


Q ss_pred             eecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEE-E
Q psy988          232 AQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYI-V  310 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~  310 (408)
                                     .........+++.++|+.+++....+.|.+||.+.++....+.....  ..++++|.||++.| +
T Consensus       222 ---------------~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         222 ---------------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             ---------------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEE
T ss_pred             ---------------ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEE
Confidence                           01112345677788888877777889999999988877766665332  56789999999755 5


Q ss_pred             EecCCceEEEeeccc
Q psy988          311 SGSENQCIYIWKTHH  325 (408)
Q Consensus       311 ~~~~dg~i~iw~~~~  325 (408)
                      +.+.+|.|..+++..
T Consensus       285 t~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         285 TEHENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTTEEEEEECSS
T ss_pred             EECCCCcEEEEECCC
Confidence            666778888888754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.25  E-value=6.9e-08  Score=78.23  Aligned_cols=223  Identities=12%  Similarity=0.103  Sum_probs=131.3

Q ss_pred             ceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC----CCeEE
Q psy988           67 TKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN----DSRIR  142 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~  142 (408)
                      ...+..++|.++|++.++-...+.|..|+.++........        ........+++.++|+.+++...    .+.+.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--------~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe--------CCCCCeeEEEECCCCCEEEEecCCCccceeEE
Confidence            3345789999999977777788999999887765333221        11235788999999987776532    33455


Q ss_pred             EEEccCcccceeecCccccccceEEEEecCCCEEEEeecC------ceEEEeeeccceeeeeecccCCCccccccccccc
Q psy988          143 LYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN------QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNA  216 (408)
Q Consensus       143 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                      ..+.....................+++.++|++.++....      +.+..                             
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~-----------------------------  161 (319)
T d2dg1a1         111 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY-----------------------------  161 (319)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE-----------------------------
T ss_pred             EEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEE-----------------------------
Confidence            5565555444333332333345668888888755543211      11222                             


Q ss_pred             eEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEE-ecCCCeEEEEEcCCC-eeeeEEe-----
Q psy988          217 VVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILV-TSNDSRIRLYDLRDL-NLSCKYK-----  289 (408)
Q Consensus       217 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~-~~~~~~~-----  289 (408)
                            +.|++..+.             .....-.....++|+|+++.|+. -+..+.|..||+... .......     
T Consensus       162 ------~~~dg~~~~-------------~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~  222 (319)
T d2dg1a1         162 ------VSPDFRTVT-------------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY  222 (319)
T ss_dssp             ------ECTTSCCEE-------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             ------EecccceeE-------------EEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeee
Confidence                  222222110             00011123456788888876544 467789999998642 2211111     


Q ss_pred             eccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCccccccccCccccceeee------eeccceEEEEecC
Q psy988          290 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIK------AHNAVVTCAVFAP  358 (408)
Q Consensus       290 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~  358 (408)
                      ........-.+++.++|++.++....+.|.+|+.. +            +.+..+.      ++...+++++|.|
T Consensus       223 ~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G------------~~l~~i~~P~~~~~~~~~~~~~~~~~  284 (319)
T d2dg1a1         223 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G------------YPIGQILIPGRDEGHMLRSTHPQFIP  284 (319)
T ss_dssp             ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S------------CEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             ccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-C------------cEEEEEeCCCcCCCcCceeeeEEEeC
Confidence            11111124468999999988888889999999964 3            2333322      3445678999998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.22  E-value=6.6e-08  Score=78.38  Aligned_cols=240  Identities=10%  Similarity=-0.002  Sum_probs=146.5

Q ss_pred             CCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec----CCEEEEEecc
Q psy988           22 IDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY----DGRCIFYTTD   97 (408)
Q Consensus        22 ~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~   97 (408)
                      ...+..++|.+ +|+++++-...+.|..|+.+++...  ............+++.++|+++++...    .+.+...+..
T Consensus        39 ~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~--~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          39 GLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CcCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEE--EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            34457899999 8888887778899999998877654  233344556789999999987776543    2345555555


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeC------CCeEEEEEccCcccceeecCccccccceEEEEec
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSN------DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      ........  ..    .........+++.++|+..++...      .+.+..++...... ..+..  .......++|+|
T Consensus       116 ~~~~~~~~--~~----~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~--~~~~pnGia~s~  186 (319)
T d2dg1a1         116 GDNLQDII--ED----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQ--NISVANGIALST  186 (319)
T ss_dssp             SCSCEEEE--CS----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEE--EESSEEEEEECT
T ss_pred             Cceeeeec--cC----CCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEee--ccceeeeeeecc
Confidence            44332211  11    111235788999999976555322      23455555543322 22211  122355789999


Q ss_pred             CCCEEEEe-ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC
Q psy988          172 DGKYIVSG-SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG  250 (408)
Q Consensus       172 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
                      +++.|+.+ +..+.|+.|++.........                 .......                      .....
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~-----------------~~~~~~~----------------------~~~~~  227 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQP-----------------FGATIPY----------------------YFTGH  227 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEE-----------------EEEEEEE----------------------ECCSS
T ss_pred             ccceEEEecccCCceEEEEEcCCCceecc-----------------ccceeee----------------------ccCCc
Confidence            99877555 45778999987542111000                 0000000                      00111


Q ss_pred             ceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccc----eeceeEEEEcCCCCEEEEec
Q psy988          251 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVN----VSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~  313 (408)
                      .....+++.++|++.++....+.|.+||. .++.+..+.....    ...+++++|.+++..+++..
T Consensus       228 ~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         228 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             cceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            23556778888888888888899999995 6888877764321    22467899999887776543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.2e-09  Score=89.55  Aligned_cols=262  Identities=11%  Similarity=0.071  Sum_probs=144.1

Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC-CceeeEEEEEecCCCEEEEEe---------cCCEEEEEecc
Q psy988           28 ICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG-QTKLITAANFCENGKFAVVGS---------YDGRCIFYTTD   97 (408)
Q Consensus        28 ~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---------~dg~i~iw~~~   97 (408)
                      ..|.+ ++.++.. ..+|.|.+||+.+++...+..... ....+....||||+++++...         ..+.+.++|+.
T Consensus        22 ~~W~~-~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeC-CCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            46888 7776543 457899999999887542222111 223567788999999988764         35788999998


Q ss_pred             CCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecCcccc----------------
Q psy988           98 QLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNV----------------  161 (408)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------  161 (408)
                      ++.....      .........+....|+|+|+.++... ++.|.+.+..++...+........                
T Consensus       100 ~~~~~~l------~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1         100 HGDPQSL------DPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             SCCCEEC------CCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             CCceeec------cCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhc
Confidence            7764221      11112234566789999999998876 467888888766554433221110                


Q ss_pred             ccceEEEEecCCCEEEEeec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCC
Q psy988          162 SSQIKASFSHDGKYIVSGSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSE  240 (408)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  240 (408)
                      ..-..+-|||||++|+.... +..+..+.+........   ......-....+...+...+        .+.........
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~---p~~~~~~Yp~~G~~np~~~l--------~v~d~~~~~~~  241 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY---PTVKPYHYPKAGSENPSISL--------HVIGLNGPTHD  241 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS---CCCEEEECCBTTSCCCEEEE--------EEEESSSSCCC
T ss_pred             cccceEEECCCCCeEEEEEecccccceeeccccccccc---ceeeeeeccccCCCCCceeE--------EEEecCCCcEE
Confidence            11135679999999998754 34455554422100000   00000000011111111111        11111111000


Q ss_pred             ---CceeeecCCCceeeeeccCCCCCeEEEec----CCCeEEEEEcCCCeeeeEEeeccceec----eeEEEEcCCCCEE
Q psy988          241 ---STGYVLNATGRKISGIEPMPGEDKILVTS----NDSRIRLYDLRDLNLSCKYKGYVNVSS----QIKASFSHDGKYI  309 (408)
Q Consensus       241 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l  309 (408)
                         ............+..+.|+|+++.++...    ....+.++|..+++....+..... ..    -....|+|||+.+
T Consensus       242 ~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~-~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSCSE
T ss_pred             EEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC-ceEeccCCceeEccCCCee
Confidence               00001112334577889999998766642    224688899999987665543321 11    1245899999854


Q ss_pred             E
Q psy988          310 V  310 (408)
Q Consensus       310 ~  310 (408)
                      +
T Consensus       321 ~  321 (465)
T d1xfda1         321 F  321 (465)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.04  E-value=3.5e-07  Score=72.95  Aligned_cols=231  Identities=13%  Similarity=0.059  Sum_probs=144.5

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988           26 TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        26 ~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      -...|++.++.++.+=-..+.|.-||.++++... ..   ....+.++++.++|.++++ +.+ .+.++|..+++.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            4567887456665555567899999998886542 12   2345788999999877665 444 6889999887653322


Q ss_pred             EEeeccccccCCCCeEEEeeCCCCCeEEEeeC----CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEe-e
Q psy988          106 HVRSTRGKNATGRKISGIEPMPGEDKILVTSN----DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-S  180 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~  180 (408)
                      ..    ........++.+.+.|+|+..++...    .+.-.+|.+..++........   .....++++++++.++.+ +
T Consensus        95 ~~----~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~---~~~Ng~~~s~d~~~l~~~dt  167 (295)
T d2ghsa1          95 EL----ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI---SIPNSICFSPDGTTGYFVDT  167 (295)
T ss_dssp             CS----STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE---SSEEEEEECTTSCEEEEEET
T ss_pred             ee----ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc---CCcceeeecCCCceEEEeec
Confidence            11    11112346888999999986665432    234566777666554433322   224568999999876655 4


Q ss_pred             cCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCC
Q psy988          181 ENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMP  260 (408)
Q Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (408)
                      ..+.|+.|++........               ....+   ..                     ........+..+++..
T Consensus       168 ~~~~I~~~~~d~~~~~~~---------------~~~~~---~~---------------------~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         168 KVNRLMRVPLDARTGLPT---------------GKAEV---FI---------------------DSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             TTCEEEEEEBCTTTCCBS---------------SCCEE---EE---------------------ECTTSSSEEEEEEECT
T ss_pred             ccceeeEeeecccccccc---------------cceEE---Ee---------------------ccCcccccccceEEcC
Confidence            567888887743211000               00000   00                     0112234566777888


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEc-CCCCEEEE
Q psy988          261 GEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFS-HDGKYIVS  311 (408)
Q Consensus       261 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~  311 (408)
                      +|++.++.-..+.|..||. +++.+..+.....  .+++++|- ||.+.|+.
T Consensus       209 ~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         209 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEE
T ss_pred             CCCEEeeeeCCCceEEecC-CCcEeeEecCCCC--ceEEEEEeCCCCCEEEE
Confidence            8887777777889999994 6888888776443  57899995 67666654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=3.4e-06  Score=67.10  Aligned_cols=202  Identities=11%  Similarity=0.044  Sum_probs=126.0

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC--CceeeEEEEEecCCC
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG--QTKLITAANFCENGK   80 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~   80 (408)
                      +.|..||.++++. ..+.....+.++++.+ ++.++++ +.+ .+.++|..+++...+.....  ....+..+.+.|+|+
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~  115 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA  115 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC
Confidence            5677778777664 3455677889999998 7876665 444 58999999988664333222  234688999999998


Q ss_pred             EEEEEecC----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccc---
Q psy988           81 FAVVGSYD----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLS---  152 (408)
Q Consensus        81 ~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~---  152 (408)
                      +.++....    +.-.+|.+..++........         ...+.++|+++++.++.+ +..+.|..+++......   
T Consensus       116 iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~---------~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         116 LWIGTMGRKAETGAGSIYHVAKGKVTKLFADI---------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             EEEEEEETTCCTTCEEEEEEETTEEEEEEEEE---------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             EEEEeccccccccceeEeeecCCcEEEEeecc---------CCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence            76665432    34456666655433222111         246789999999977666 55788999987532111   


Q ss_pred             --ee-ecCccccccceEEEEecCCCEEEEeecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEe-CCcc
Q psy988          153 --CK-YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFA-PCPE  228 (408)
Q Consensus       153 --~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~  228 (408)
                        .. ............+++..+|++.++.-..+.|..||...             +.+..+......+++++|- |+.+
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G-------------~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-------------NHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-------------CEEEEEECSCSBEEEEEEESTTSC
T ss_pred             ceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC-------------cEeeEecCCCCceEEEEEeCCCCC
Confidence              11 11111223355788999998777766778899998642             2222233223456777775 4555


Q ss_pred             ee
Q psy988          229 LI  230 (408)
Q Consensus       229 ~~  230 (408)
                      .|
T Consensus       254 ~L  255 (295)
T d2ghsa1         254 RL  255 (295)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=1.8e-06  Score=68.40  Aligned_cols=101  Identities=12%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             EEcCCC--CCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec-C-----CEEEEEeccCCe
Q psy988           29 CFHPRD--DRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY-D-----GRCIFYTTDQLK  100 (408)
Q Consensus        29 ~~sp~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iw~~~~~~  100 (408)
                      ..+| +  |+.+|..+ +|.|.+.|+.+++..   .+..+.+.+...+|||||+.||.... +     ..|.+++..+++
T Consensus         5 ~~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~---~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNP-DIHGDRIIFVC-CDDLWEHDLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEE-EEETTEEEEEE-TTEEEEEETTTCCEE---EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCC-CCCCCEEEEEe-CCcEEEEECCCCCEE---EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            3578 7  88887665 477999999988764   56667778899999999999986543 2     246777777665


Q ss_pred             eeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988          101 YHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                      .........  .............|+|+++.++...
T Consensus        80 ~~~lt~~~~--~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          80 IKRITYFSG--KSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECCCCCE--EEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eEEeeecCC--CccCccccccccccCCCCCEEEEEE
Confidence            432111000  0011112456788999999888763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=7.3e-07  Score=70.68  Aligned_cols=85  Identities=12%  Similarity=0.184  Sum_probs=60.7

Q ss_pred             CceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeC-CC-----cEEEEecCCCCceeeeee----cCCceeeE
Q psy988            2 DKTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSL-DG-----KLRLWNIPDKKVAVWNEV----EGQTKLIT   71 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~----~~~~~~v~   71 (408)
                      +|.|.+.|+.+++..+...+.+.+...+||| ||+.||.... ++     .|.+++..+++...+...    ........
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~   98 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTD   98 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSE
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccc
Confidence            4678888999999887777888999999999 9998886543 22     377777777765422111    12234567


Q ss_pred             EEEEecCCCEEEEEec
Q psy988           72 AANFCENGKFAVVGSY   87 (408)
Q Consensus        72 ~~~~~~~~~~l~~~~~   87 (408)
                      ...|+|+|+.|+....
T Consensus        99 ~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          99 VAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEEECTTCCEEEEECT
T ss_pred             ccccCCCCCEEEEEEc
Confidence            7889999998887543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.54  E-value=0.00014  Score=60.17  Aligned_cols=163  Identities=11%  Similarity=0.089  Sum_probs=95.8

Q ss_pred             ceEEEEEcCCCCCEEEEEeCCC-----------cEEEEecCCCCceeeeee-cCCceeeEEEEEecCCCEEEEEecC-CE
Q psy988           24 FVTAICFHPRDDRYFLSGSLDG-----------KLRLWNIPDKKVAVWNEV-EGQTKLITAANFCENGKFAVVGSYD-GR   90 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~   90 (408)
                      ++....... ++++++.|+.+.           .+.+||..++........ ..+........+.++|++++.|+.+ ..
T Consensus        21 ~~~~a~~~~-~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             ccEEEEEee-CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            333444444 889999888531           377999998876532222 2233333456788999999988765 58


Q ss_pred             EEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC------CeEEEEEccCcccceeecCccc----
Q psy988           91 CIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND------SRIRLYDLRDLNLSCKYKGYVN----  160 (408)
Q Consensus        91 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~----  160 (408)
                      +.+||..+......   .....    ...-...+..++++.++.++.+      ..+.+||..+.+-...-.....    
T Consensus       100 ~~~yd~~~~~w~~~---~~~~~----~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~  172 (387)
T d1k3ia3         100 TSLYDSSSDSWIPG---PDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT  172 (387)
T ss_dssp             EEEEEGGGTEEEEC---CCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred             eeEecCccCccccc---ccccc----cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccc
Confidence            99999988765321   11111    1123456667789988888642      3689999987653211100000    


Q ss_pred             --------cccceEEEEecCCCEEEEeecCceEEEeeeccce
Q psy988          161 --------VSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  194 (408)
Q Consensus       161 --------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (408)
                              ...-..+...++|+.++.+...+.+.+++..+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         173 ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             CCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             ccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence                    0001112334567777777777777777765543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=3.3e-05  Score=62.51  Aligned_cols=231  Identities=12%  Similarity=0.071  Sum_probs=132.5

Q ss_pred             CCCEEEEEe-CCCcEEEEecCCCCceeeeeecCCceeeEEEEEe--cCCCEEEEEecC------------------CEEE
Q psy988           34 DDRYFLSGS-LDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC--ENGKFAVVGSYD------------------GRCI   92 (408)
Q Consensus        34 ~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d------------------g~i~   92 (408)
                      ||++|+... .+..|.+-|+++.+......+. ....+..++..  |+-.|++..+.+                  +.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            578887776 4788999999998876433442 23344555554  456677776653                  2367


Q ss_pred             EEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCC---------------eEEEEEc-----------
Q psy988           93 FYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDS---------------RIRLYDL-----------  146 (408)
Q Consensus        93 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d~-----------  146 (408)
                      ++|.++.+...+....         +....+.++++|+++++.+.+.               .+.+++.           
T Consensus       177 ~ID~~tm~V~~QV~V~---------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVS---------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             EEETTTTEEEEEEEES---------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             EEecCCceEEEEeeeC---------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence            7888888776665543         2566789999999998876421               1334443           


Q ss_pred             ------------cCc---ccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccceeeeeecccCCCccccc
Q psy988          147 ------------RDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSVRRDRNDFWEG  210 (408)
Q Consensus       147 ------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (408)
                                  ++.   ..+..+..   ......+.++|||+++++++ .+.++.++|++.-...+.            
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~------------  312 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY------------  312 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH------------
T ss_pred             cEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc------------
Confidence                        211   01111111   12234578999999987765 478999999864211110            


Q ss_pred             cccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCC--------
Q psy988          211 IKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDL--------  282 (408)
Q Consensus       211 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------  282 (408)
                        ...        .|....              ......+-....-+|+.+|....+---|..|.-|++...        
T Consensus       313 --~~~--------~~~~~~--------------~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~  368 (459)
T d1fwxa2         313 --ENA--------DPRSAV--------------VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  368 (459)
T ss_dssp             --SCC---------GGGGE--------------EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             --ccC--------CccccE--------------EeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhcccc
Confidence              000        000000              000112233444566666655555678999999998532        


Q ss_pred             --eeeeEEeeccceeceeE---EEEcCCCCEEEEec
Q psy988          283 --NLSCKYKGYVNVSSQIK---ASFSHDGKYIVSGS  313 (408)
Q Consensus       283 --~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~  313 (408)
                        ..+..+..|...+....   -...|||++|++..
T Consensus       369 ~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         369 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence              34445554433222111   13578999999875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=0.00028  Score=53.96  Aligned_cols=264  Identities=11%  Similarity=0.078  Sum_probs=146.0

Q ss_pred             eEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEE
Q psy988            4 TVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAV   83 (408)
Q Consensus         4 ~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   83 (408)
                      +|.|-|+.++....  ...-.-.+.-.+| ..+.||.-+ ..++.++|+++.+.+....+.   ..|.-=.|-.+. .|+
T Consensus        46 ~VvIidl~n~~~~~--Rrpi~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis~~-~L~  117 (327)
T d1utca2          46 QVVIIDMNDPSNPI--RRPISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN-TVA  117 (327)
T ss_dssp             EEEEEETTSTTSCE--EEECCCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEESSSS-EEE
T ss_pred             eEEEEECCCCCcce--ecccchhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcC---CCcEEEEecCCC-EEE
Confidence            34555554433221  1222334566789 888887766 468999999998766333332   345555665443 444


Q ss_pred             EEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee---C----CCeEEEEEccCcccceeec
Q psy988           84 VGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS---N----DSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        84 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~----dg~i~i~d~~~~~~~~~~~  156 (408)
                      ..+ +..|+-|+++..........+. ..  -....|..-..+++.++++..+   .    .|.+.+|..+.+ ..+.+.
T Consensus       118 lVT-~taVYHW~~~g~s~P~k~fdR~-~~--L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie  192 (327)
T d1utca2         118 LVT-DNAVYHWSMEGESQPVKMFDRH-SS--LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE  192 (327)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECC-GG--GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC
T ss_pred             EEc-CCceEEEcccCCCCchhhhhhc-cc--ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc
Confidence            443 5689999997654332222111 11  1245788888899999877642   2    467889988754 344555


Q ss_pred             CccccccceEEEE--ecCCCEEE-Ee---ecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCccee
Q psy988          157 GYVNVSSQIKASF--SHDGKYIV-SG---SENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELI  230 (408)
Q Consensus       157 ~~~~~~~~~~~~~--~~~~~~l~-~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  230 (408)
                      +|...  ...+.+  .++...++ .+   ...+.+++.++..+...              -.........+.|.|+    
T Consensus       193 Ghaa~--F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g--------------~~~f~kk~vdi~fppe----  252 (327)
T d1utca2         193 GHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG--------------NQPFPKKAVDVFFPPE----  252 (327)
T ss_dssp             CSEEE--EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT--------------CCCCCCEEEECCCCTT----
T ss_pred             ceeee--eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC--------------CCCCcceeEEEECCcc----
Confidence            55431  001111  11111222 22   12356777776432100              0111122233444443    


Q ss_pred             eeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE
Q psy988          231 IAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV  310 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  310 (408)
                                       ..+.-+.++..++....++.-+.-|.|.+||+.++.++..-+-...  .+...+-..+..-++
T Consensus       253 -----------------a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~  313 (327)
T d1utca2         253 -----------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGII  313 (327)
T ss_dssp             -----------------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEE
T ss_pred             -----------------ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEE
Confidence                             2344566778888888888899999999999999998876554333  333333333433444


Q ss_pred             EecCCceEE
Q psy988          311 SGSENQCIY  319 (408)
Q Consensus       311 ~~~~dg~i~  319 (408)
                      +...+|.|.
T Consensus       314 ~VNr~GqVl  322 (327)
T d1utca2         314 GVNRKGQVL  322 (327)
T ss_dssp             EEETTSEEE
T ss_pred             EECCCCeEE
Confidence            444666554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.28  E-value=0.00095  Score=57.92  Aligned_cols=116  Identities=10%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             CCCEEEEEeCCCcEEEEecC-CCCceeeeeecCCce--e-------eEEEEEecCCCEEEEEecCCEEEEEeccCCeeeE
Q psy988           34 DDRYFLSGSLDGKLRLWNIP-DKKVAVWNEVEGQTK--L-------ITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHT  103 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~--~-------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  103 (408)
                      ++.++++.+.++.|.-.|.. +|+.+=.........  .       -..+++.  +..++.++.||.+.-.|.++++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            45444444446778777764 566542111110000  0       0123332  3467788899999999999998766


Q ss_pred             EEEEeeccccccCCCCeEEEeeCCCCCeEEEee------CCCeEEEEEccCcccceeec
Q psy988          104 QIHVRSTRGKNATGRKISGIEPMPGEDKILVTS------NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus       104 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ..........    ..++.--.- -+..++++.      ..|.|+-+|+++++.+-.+.
T Consensus       140 ~~~~~~~~~~----~~~t~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         140 EVEVCDPKVG----STLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEECCCGGGT----CBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             cccccccccc----cceeecCeE-eCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            5543221111    011110001 134555554      36789999999999876543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.00062  Score=55.05  Aligned_cols=276  Identities=7%  Similarity=-0.043  Sum_probs=144.6

Q ss_pred             EEEEecCCEEEEEeccCCeeeEEEEEeeccccccC---------------------------------CCCeEEEeeCC-
Q psy988           82 AVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNAT---------------------------------GRKISGIEPMP-  127 (408)
Q Consensus        82 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~v~~~~~~~-  127 (408)
                      +.+|+..|.++++-+.+++....+.........+-                                 ...=..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            56788899999999988887776655432221100                                 00111344443 


Q ss_pred             --CCCeEEEee-CCCeEEEEEccCcccceeecCccccccceEEEE--ecCCCEEEEeecCc------------------e
Q psy988          128 --GEDKILVTS-NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASF--SHDGKYIVSGSENQ------------------C  184 (408)
Q Consensus       128 --~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg------------------~  184 (408)
                        ||+++++.. .++.|.+.|+++.+..+....... ..+..+..  .|+..|+++++++.                  .
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~-~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCC-CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              788888875 578999999999887654433211 22333344  34556777766532                  2


Q ss_pred             EEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCC-ceeee------ec
Q psy988          185 IYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATG-RKISG------IE  257 (408)
Q Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~------~~  257 (408)
                      +..+|..+.....+..            . ......+.++++|+++++...+.............. ..+..      ..
T Consensus       175 ~t~ID~~tm~V~~QV~------------V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVL------------V-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             EEEEETTTTEEEEEEE------------E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             EEEEecCCceEEEEee------------e-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence            3444544433222211            0 122345778888888777543332211111111110 01100      11


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCC---eeeeEEeeccceeceeEEEEcCCCCEEEEec-CCceEEEeeccccCcccccc
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDL---NLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHDYAKFSSV  333 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~  333 (408)
                      +.++|++--.    +.+.+-|.+..   .....++...   ....+.++|||+++++++ .+.++.++|++.-...+...
T Consensus       242 av~~Gk~~ei----ngV~VVD~~~~~~~~v~~yIPVpK---sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~  314 (459)
T d1fwxa2         242 AIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  314 (459)
T ss_dssp             HHHHTCSEEE----TTEEEEECSGG--CSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             hhhcCCcEEe----CCceeecccccCCcceeEEEecCC---CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc
Confidence            1223332221    23566676532   2222333322   234679999999988654 58899999997532221111


Q ss_pred             ccCccccceeeeeeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCC
Q psy988          334 RRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKT  395 (408)
Q Consensus       334 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~  395 (408)
                      ..+. ..+..-....-.-..-+|..                .|+...|---|..|.-|++..
T Consensus       315 ~~~~-~~~~~e~elglgPLht~fd~----------------~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         315 ADPR-SAVVAEPELGLGPLHTAFDG----------------RGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             C-GG-GGEEECCBCCSCEEEEEECT----------------TSEEEEEETTTTEEEEEEHHH
T ss_pred             CCcc-ccEEeecccCcCccccccCC----------------CceEEEEeeccceEEEEecch
Confidence            1111 11111111222335677877                787667777899999999853

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.08  E-value=0.0026  Score=55.11  Aligned_cols=192  Identities=11%  Similarity=0.071  Sum_probs=106.9

Q ss_pred             CceEEEEec-cCCeeEeEEEeCCce------------EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCC--
Q psy988            2 DKTVRLWHI-SRKECLCCFQHIDFV------------TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ--   66 (408)
Q Consensus         2 Dg~i~vwd~-~~~~~~~~~~h~~~v------------~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--   66 (408)
                      ++.|.-.|. ++|+.+-.+......            ..+++.   +..++.++.||.+.-.|.++++..-...+...  
T Consensus        72 ~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~---~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~  148 (571)
T d2ad6a1          72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV  148 (571)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG
T ss_pred             CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee---CCeEEEEeCCCcEEeeehhhhhhhcccccccccc
Confidence            356666676 468887766422111            123443   23577788899999999999987532222111  


Q ss_pred             ceeeEEEEEecCCCEEEEEe------cCCEEEEEeccCCeeeEEEEEeecccc---------------------------
Q psy988           67 TKLITAANFCENGKFAVVGS------YDGRCIFYTTDQLKYHTQIHVRSTRGK---------------------------  113 (408)
Q Consensus        67 ~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~---------------------------  113 (408)
                      ...++.--.-.++. ++.+.      .+|.|+-+|+.+++.............                           
T Consensus       149 ~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (571)
T d2ad6a1         149 GSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGD  227 (571)
T ss_dssp             TCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTT
T ss_pred             ccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCc
Confidence            11111111112343 44444      368999999999998776543221100                           


Q ss_pred             --ccCCCCe-EEEeeCCCCCeEEEeeC----------------CCeEEEEEccCcccceeecCcccc-------ccceEE
Q psy988          114 --NATGRKI-SGIEPMPGEDKILVTSN----------------DSRIRLYDLRDLNLSCKYKGYVNV-------SSQIKA  167 (408)
Q Consensus       114 --~~~~~~v-~~~~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~  167 (408)
                        ......+ ...++.+....++.+..                ...+.-.|+++++..-.++...+.       ......
T Consensus       228 ~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~  307 (571)
T d2ad6a1         228 AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLT  307 (571)
T ss_dssp             GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEE
T ss_pred             ccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccccccccee
Confidence              0001111 23455566666665533                346778899999887766543221       111222


Q ss_pred             EEecCCC---EEEEeecCceEEEeeeccceeee
Q psy988          168 SFSHDGK---YIVSGSENQCIYIWKTHHDYAKF  197 (408)
Q Consensus       168 ~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~  197 (408)
                      ....+++   .++.++.+|.++++|..+++...
T Consensus       308 ~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         308 DQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eeeccCccccceeeccccceEEEEecCCCcEee
Confidence            2333453   46678889999999998887653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.08  E-value=0.0027  Score=55.23  Aligned_cols=72  Identities=10%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             CCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEE-EeeCCCCCeEEEeeC------CCeEEEEEccCccc
Q psy988           79 GKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISG-IEPMPGEDKILVTSN------DSRIRLYDLRDLNL  151 (408)
Q Consensus        79 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~  151 (408)
                      +.+++.++.|+.|.-.|.++++..............    .++. -.+  -+..++++..      .|.|+-+|+++++.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~----~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGS----TLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTC----BCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             ceEEEEEeCCCCeEeeccccCceecccccccccccc----ccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcE
Confidence            346888999999999999999887665432211110    1110 001  1456666643      48999999999998


Q ss_pred             ceeec
Q psy988          152 SCKYK  156 (408)
Q Consensus       152 ~~~~~  156 (408)
                      +-++.
T Consensus       195 ~W~~~  199 (596)
T d1w6sa_         195 VWRAY  199 (596)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            76643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.01  E-value=0.0028  Score=52.89  Aligned_cols=247  Identities=13%  Similarity=0.095  Sum_probs=125.4

Q ss_pred             CceeeEEEEEecCCCEEEEEe-cC----CEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC--
Q psy988           66 QTKLITAANFCENGKFAVVGS-YD----GRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND--  138 (408)
Q Consensus        66 ~~~~v~~~~~~~~~~~l~~~~-~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  138 (408)
                      +.-.+...+++|++++++.+- ..    -.++++|+.+++.........         ....++|.+++..|+....+  
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~---------~~~~~~W~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV---------KFSCMAWTHDGKGMFYNAYPQQ  193 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE---------CSCCEEECTTSSEEEEEECCCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc---------cccceEEcCCCCEEEEEEeccc
Confidence            444456678899999988543 23    379999999998654322111         22468899999988765432  


Q ss_pred             --------------CeEEEEEccCcccc--eeecCccccccceEEEEecCCCEEEEeec---Cce--EEEeeeccceeee
Q psy988          139 --------------SRIRLYDLRDLNLS--CKYKGYVNVSSQIKASFSHDGKYIVSGSE---NQC--IYIWKTHHDYAKF  197 (408)
Q Consensus       139 --------------g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~--i~i~d~~~~~~~~  197 (408)
                                    ..|..+.+.+....  ..+...........+..++++++++....   +..  +.+.|+.......
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~  273 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence                          25778887765433  22333333333455678889998765432   233  4444543321111


Q ss_pred             eecccCCCccccccccccceEEEEE------------EeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeE
Q psy988          198 SSVRRDRNDFWEGIKAHNAVVTCAV------------FAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKI  265 (408)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (408)
                      ...    ...............-+.            -.|+++.+.+............++..+...+..-.+...+.+|
T Consensus       274 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         274 TGI----LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             CSS----CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             ccc----cceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEE
Confidence            000    000000011111111111            1133444433333222222233444444444433344444555


Q ss_pred             EEe-cCC--CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEE--ec--CCceEEEeeccccC
Q psy988          266 LVT-SND--SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVS--GS--ENQCIYIWKTHHDY  327 (408)
Q Consensus       266 ~~~-~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~--~dg~i~iw~~~~~~  327 (408)
                      +.. ..+  ..|+++++.+++.........  ..+..+...++...+..  .+  .-.+++-+|+.++.
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            544 344  458899998877655544332  24444555555544332  22  23678888888763

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.00  E-value=0.0026  Score=52.19  Aligned_cols=115  Identities=13%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             EEecCCCEEEEEecC-----C------EEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC-CeE
Q psy988           74 NFCENGKFAVVGSYD-----G------RCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND-SRI  141 (408)
Q Consensus        74 ~~~~~~~~l~~~~~d-----g------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i  141 (408)
                      ....+|+.++.|+.+     +      .+.+||..+............     +.......++.+++..++.|+.+ ..+
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-----~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-----HDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-----CCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC-----cccceeEEEEecCCcEEEeecCCCcce
Confidence            334577777777642     1      367899988765432222211     11223456788899888888654 689


Q ss_pred             EEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC------ceEEEeeeccce
Q psy988          142 RLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN------QCIYIWKTHHDY  194 (408)
Q Consensus       142 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~  194 (408)
                      .+||..+..-...-..... ..-...+..+||+.++.|+.+      ..+.+||..+..
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            9999987664332211111 222346777899998888753      368899987754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=0.0016  Score=49.75  Aligned_cols=224  Identities=5%  Similarity=0.054  Sum_probs=133.1

Q ss_pred             CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEe
Q psy988           45 GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIE  124 (408)
Q Consensus        45 g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  124 (408)
                      ..|.|-|+........+...+     .+.-.+|..+.|+.-+ ..++.++|+++.+.........         +|.--.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~A-----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---------~VvfWk  109 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---------DVTFWK  109 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---------CCCEEE
T ss_pred             ceEEEEECCCCCcceecccch-----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---------CcEEEE
Confidence            478888887765443233332     2334678888777665 5689999999987766554332         676677


Q ss_pred             eCCCCCeEEEeeCCCeEEEEEccCc-ccceeecCccc--cccceEEEEecCCCEEEEee-------cCceEEEeeeccce
Q psy988          125 PMPGEDKILVTSNDSRIRLYDLRDL-NLSCKYKGYVN--VSSQIKASFSHDGKYIVSGS-------ENQCIYIWKTHHDY  194 (408)
Q Consensus       125 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~  194 (408)
                      |-. .+.|+..+. ..|+-|+++.. .+.+.+..+..  ...+.....+++.++++..+       -.|.+.+|..+...
T Consensus       110 Wis-~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~  187 (327)
T d1utca2         110 WIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  187 (327)
T ss_dssp             ESS-SSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred             ecC-CCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc
Confidence            764 345555544 57999999543 34444544433  24466677788899876543       24677888775432


Q ss_pred             eeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecCCCeE
Q psy988          195 AKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSNDSRI  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  274 (408)
                                   .+.+.+|......+.+..+..                     ...+-+.+.  .      +...+++
T Consensus       188 -------------sQ~ieGhaa~F~~~~~~g~~~---------------------~~~lf~fa~--r------~~~~~kL  225 (327)
T d1utca2         188 -------------SQPIEGHAASFAQFKMEGNAE---------------------ESTLFCFAV--R------GQAGGKL  225 (327)
T ss_dssp             -------------EEEECCSEEEEEEECCTTCSS---------------------CEEEEEEEE--E------ETTEEEE
T ss_pred             -------------CccccceeeeeEEEEcCCCCC---------------------CceEEEEEE--C------CCCCcEE
Confidence                         234556655554444332110                     001111110  0      2334678


Q ss_pred             EEEEcCCCe---ee---eE----EeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccC
Q psy988          275 RLYDLRDLN---LS---CK----YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDY  327 (408)
Q Consensus       275 ~i~d~~~~~---~~---~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  327 (408)
                      ++.++....   ..   +.    ++.........++..|+.-..+..-+.-|.|++||+.++.
T Consensus       226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence            888875421   11   11    1111112345578888888889889999999999999983

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.0039  Score=48.01  Aligned_cols=230  Identities=8%  Similarity=-0.070  Sum_probs=122.8

Q ss_pred             EEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccccccC
Q psy988           38 FLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRGKNAT  116 (408)
Q Consensus        38 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  116 (408)
                      |+.+.. ..|+-.++++.+..   .+......+.++.|.+..+.|+-.. ..+.|.-.++..............    ..
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~---~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----~~   75 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RD   75 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SS
T ss_pred             EEEECC-CeEEEEECCCCcce---eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----CC
Confidence            444433 46888899877654   2333455678999998877776654 456676666654322111111111    11


Q ss_pred             CCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeec--CceEEEeeeccc
Q psy988          117 GRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSE--NQCIYIWKTHHD  193 (408)
Q Consensus       117 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~  193 (408)
                      ...+.++++.+.++.|+.+ ...+.|.+.++............  ...+..++++|...+|+....  .+.|.-.++...
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~--~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs  153 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC--CCCcceEEEEcccCeEEEeccCCCcceeEeccCCC
Confidence            1356678888767777766 45678999998765543333322  233567888886666655432  233444443211


Q ss_pred             eeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-cCCC
Q psy988          194 YAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-SNDS  272 (408)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~  272 (408)
                      ..             ..                                  +....-..+.++++.+.++.|+.+ ...+
T Consensus       154 ~~-------------~~----------------------------------l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         154 DI-------------YS----------------------------------LVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             CE-------------EE----------------------------------EECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ce-------------ec----------------------------------ccccccceeeEEEeeccccEEEEecCCcC
Confidence            00             00                                  000111234455555555555554 5668


Q ss_pred             eEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEe-cCCceEEEeecccc
Q psy988          273 RIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTHHD  326 (408)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~  326 (408)
                      .|...++....................+++.  +.+|... ..++.|...+..++
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence            8999898755444334333222234456665  3444443 45677777776655

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.73  E-value=0.011  Score=51.23  Aligned_cols=194  Identities=14%  Similarity=0.093  Sum_probs=108.2

Q ss_pred             ceEEEEec-cCCeeEeEEEeCCc-----------e-EEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCceeeeeecCC
Q psy988            3 KTVRLWHI-SRKECLCCFQHIDF-----------V-TAICFHPR---DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQ   66 (408)
Q Consensus         3 g~i~vwd~-~~~~~~~~~~h~~~-----------v-~~~~~sp~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~   66 (408)
                      +.|...|. ++|+.+-.+.+...           + +.+++.+.   .+.+++.++.|+.|.-.|.++++..-.......
T Consensus        73 ~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~  152 (596)
T d1w6sa_          73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI  152 (596)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG
T ss_pred             CcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceecccccccc
Confidence            45556675 57888877642211           1 33555441   234688888999999999999987632221111


Q ss_pred             c--eeeEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeeccc--------------------------
Q psy988           67 T--KLITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRG--------------------------  112 (408)
Q Consensus        67 ~--~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~--------------------------  112 (408)
                      .  ..++.--.- -+..++.+..      .|.|+-+|..+++............                          
T Consensus       153 ~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~  231 (596)
T d1w6sa_         153 KVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWE  231 (596)
T ss_dssp             GGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSS
T ss_pred             ccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCC
Confidence            1  111110011 1334555543      4899999999999887655322100                          


Q ss_pred             ----cccCCCCeEEEeeCCCCCeEEEeeC----------------CCeEEEEEccCcccceeecCcccccc-------ce
Q psy988          113 ----KNATGRKISGIEPMPGEDKILVTSN----------------DSRIRLYDLRDLNLSCKYKGYVNVSS-------QI  165 (408)
Q Consensus       113 ----~~~~~~~v~~~~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~  165 (408)
                          .......-..+.+.+....++.+..                ...|.-.|+++++..-.++...+...       ..
T Consensus       232 g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~  311 (596)
T d1w6sa_         232 GDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM  311 (596)
T ss_dssp             TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE
T ss_pred             CCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCcccccee
Confidence                0000111223455566666666532                24577889999988776654322111       11


Q ss_pred             EEEE-ecCC---CEEEEeecCceEEEeeeccceeee
Q psy988          166 KASF-SHDG---KYIVSGSENQCIYIWKTHHDYAKF  197 (408)
Q Consensus       166 ~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~  197 (408)
                      -+.. ..+|   +.++....+|.++++|..+++...
T Consensus       312 l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         312 LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eeeccccccccccceeccccccceeeecCCCCceee
Confidence            1111 2244   357778889999999998876554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.72  E-value=0.012  Score=50.84  Aligned_cols=109  Identities=14%  Similarity=0.141  Sum_probs=62.9

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecCCc----------eee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEE
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEGQT----------KLI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQI  105 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  105 (408)
                      .|+.++.++.|.-.|.++++.+=  .+....          ..+ ..+..  .+..++.+..++.+.-.|..+++.....
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELW--RYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEE--EECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEE--EECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            45666778888888998887652  221110          000 11111  2456888889999999999999877655


Q ss_pred             EEeeccccccCCCCeEEEeeCC--CCCeEEEee------CCCeEEEEEccCcccceeec
Q psy988          106 HVRSTRGKNATGRKISGIEPMP--GEDKILVTS------NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus       106 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  156 (408)
                      .........       .+.-.|  .+..++++.      ..|.|+-+|.++++.+-++.
T Consensus       144 ~~~~~~~~~-------~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         144 QTTDPAKPY-------SITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             ECSCTTSSC-------BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CccCcccce-------eeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            432211110       000011  133445542      23679999999999877653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.61  E-value=0.017  Score=49.96  Aligned_cols=111  Identities=12%  Similarity=0.101  Sum_probs=62.1

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeeeecC-----Cc---eee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEE
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVAVWNEVEG-----QT---KLI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHV  107 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-----~~---~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  107 (408)
                      .|+.++.++.|.-+|.++|+.+=......     +.   ..+ ..+...  +..++.++.|+.+.-.|.++++.......
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence            46667778889999998887652111110     00   001 112221  33577778899999999999887654432


Q ss_pred             eeccccccCCCCeEEEeeCC--CCCeEEEeeC------CCeEEEEEccCcccceee
Q psy988          108 RSTRGKNATGRKISGIEPMP--GEDKILVTSN------DSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus       108 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~  155 (408)
                      ....  .   ..+. +.-.|  -+..+++++.      .|.|+-+|.++++.+-.+
T Consensus       157 ~~~~--~---~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         157 FEGQ--K---GSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             TTTC--C---SSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccCC--c---ceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            1111  0   0010 01111  1345555532      478999999999987665

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.45  E-value=0.028  Score=48.38  Aligned_cols=193  Identities=18%  Similarity=0.119  Sum_probs=103.2

Q ss_pred             CceEEEEeccCCeeEeEEEeC-C----------ce-EEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecCCcee
Q psy988            2 DKTVRLWHISRKECLCCFQHI-D----------FV-TAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKL   69 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~h~-~----------~v-~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   69 (408)
                      ++.|.-.|.++|+.+-.+... .          .+ ..++.   .+..++.+..|+.|.-.|..+++..-......+...
T Consensus        75 ~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~  151 (560)
T d1kv9a2          75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP  151 (560)
T ss_dssp             GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS
T ss_pred             CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce---eCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccc
Confidence            345566678888887665311 0          00 11222   234577888889999899888886632222221111


Q ss_pred             --eEEEEEecCCCEEEEEec------CCEEEEEeccCCeeeEEEEEeecccccc----------------------CCCC
Q psy988           70 --ITAANFCENGKFAVVGSY------DGRCIFYTTDQLKYHTQIHVRSTRGKNA----------------------TGRK  119 (408)
Q Consensus        70 --v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  119 (408)
                        ++..-.-.++ .++.+..      .|.|.-+|.++++...............                      ....
T Consensus       152 ~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  230 (560)
T d1kv9a2         152 YSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGT  230 (560)
T ss_dssp             CBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECC
T ss_pred             eeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCC
Confidence              1100001133 3344332      3789999999999887766432211100                      0011


Q ss_pred             -eEEEeeCCCCCeEEEeeC-------------------CCeEEEEEccCcccceeecCcccccc-------ceEEEEecC
Q psy988          120 -ISGIEPMPGEDKILVTSN-------------------DSRIRLYDLRDLNLSCKYKGYVNVSS-------QIKASFSHD  172 (408)
Q Consensus       120 -v~~~~~~~~~~~l~~~~~-------------------dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  172 (408)
                       =..+.+.+....++.+..                   ...|.-.|+++++....++...+...       ..-+....+
T Consensus       231 ~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~  310 (560)
T d1kv9a2         231 VWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNID  310 (560)
T ss_dssp             CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred             cccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecC
Confidence             122445566666554321                   23577778888887665544332211       111222334


Q ss_pred             C---CEEEEeecCceEEEeeeccceeeee
Q psy988          173 G---KYIVSGSENQCIYIWKTHHDYAKFS  198 (408)
Q Consensus       173 ~---~~l~~~~~dg~i~i~d~~~~~~~~~  198 (408)
                      +   ..++.+..+|.++++|..+++....
T Consensus       311 g~~~~~v~~~~k~G~~~~lDr~tG~~i~~  339 (560)
T d1kv9a2         311 GKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (560)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CceeeeeeecCccceEEEEecCCCccccc
Confidence            4   3567788899999999988765543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.43  E-value=0.029  Score=48.39  Aligned_cols=54  Identities=7%  Similarity=0.124  Sum_probs=39.9

Q ss_pred             CeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          272 SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       272 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                      |.+.-||+.+++.+-..+....   ...-..+-.|.++++|+.||.++.+|..+++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p---~~gg~lstagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeecCCCC---CCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence            5788999999998877664322   11112334678899999999999999999843

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.39  E-value=0.034  Score=48.14  Aligned_cols=55  Identities=9%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             CCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEeeccccCc
Q psy988          271 DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTHHDYA  328 (408)
Q Consensus       271 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  328 (408)
                      .|.|.-+|+.+++..-+......   +..-..+..+.++++|+.||.++.+|.++++.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p---~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCC---CccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            37788899999988877664322   22223345678888999999999999999843

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.016  Score=44.29  Aligned_cols=229  Identities=11%  Similarity=-0.022  Sum_probs=127.5

Q ss_pred             EEEEEeCCCcEEEEecCCCCce---eeeeecCCceeeEEEEEecCCCEEEEEe-cCCEEEEEeccCCeeeEEEEEeeccc
Q psy988           37 YFLSGSLDGKLRLWNIPDKKVA---VWNEVEGQTKLITAANFCENGKFAVVGS-YDGRCIFYTTDQLKYHTQIHVRSTRG  112 (408)
Q Consensus        37 ~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~  112 (408)
                      +|+-+.. +.|+-.+++.....   ....+..+...+.+++|.+..+.++-.. .++.|...+++.........      
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~------   75 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR------   75 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC------
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE------
Confidence            3444433 57777777654322   1123444556688899998877776654 55788888887654322211      


Q ss_pred             cccCCCCeEEEeeCCCCCeEEEe-eCCCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-ceEEEeee
Q psy988          113 KNATGRKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-QCIYIWKT  190 (408)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~  190 (408)
                        .....+.++++..-++.|+.+ ...+.|.+.++........+..  ....+..++++|...+++..... +..+|+..
T Consensus        76 --~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          76 --QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             --TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             --eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc--cccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence              011357888888767777666 4567999999876543322222  12346678888877766654322 22233332


Q ss_pred             ccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEe-c
Q psy988          191 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVT-S  269 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  269 (408)
                      ...                                 |..            ...+....-..+..+++.+.++.|+.+ .
T Consensus       152 ~~d---------------------------------G~~------------~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         152 HMD---------------------------------GTN------------RRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             ETT---------------------------------SCC------------CEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             cCC---------------------------------CCC------------ceeeeeecccccceEEEeecCcEEEEEeC
Confidence            110                                 000            000001112234556666555555544 5


Q ss_pred             CCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcCCCCEEE-EecCCceEEEeecccc
Q psy988          270 NDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIV-SGSENQCIYIWKTHHD  326 (408)
Q Consensus       270 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~  326 (408)
                      ..+.|...|+........+.+..+   ...+++.  +.+|. +-...+.|...|..++
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~~~~~---P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLEGLQY---PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEECCCS---EEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCEEEEEECCCCCeEEEECCCCC---cEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            678899999876555444444332   3456664  44554 4445678888887765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.36  E-value=0.037  Score=47.88  Aligned_cols=117  Identities=10%  Similarity=-0.006  Sum_probs=60.8

Q ss_pred             CEEEEEeCCCcEEEEecCCCCceeeeeecC---C-c--eee-EEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEe
Q psy988           36 RYFLSGSLDGKLRLWNIPDKKVAVWNEVEG---Q-T--KLI-TAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVR  108 (408)
Q Consensus        36 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~-~--~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  108 (408)
                      ..|.+++.++.|.-.|.++|+.+=......   . .  ..+ ..++.  .+..++.++.++.+.-.|.++++........
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeeccc
Confidence            356667778888888888887652111110   0 0  000 11222  2456778889999999999998876554432


Q ss_pred             ecccc-ccCCCCeEEEeeCCCCCeEEEe-------eCCCeEEEEEccCcccceee
Q psy988          109 STRGK-NATGRKISGIEPMPGEDKILVT-------SNDSRIRLYDLRDLNLSCKY  155 (408)
Q Consensus       109 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~  155 (408)
                      ..... .....++. ..--.....++..       +..+.|.-+|.++++.+-++
T Consensus       147 ~~~~~~~~~~~p~~-~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~  200 (582)
T d1flga_         147 DHGAGYTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             CGGGTCBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             CCCccceeecCceE-ecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEE
Confidence            21111 00111111 1100112333332       22466888888888776554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.02  Score=43.91  Aligned_cols=178  Identities=12%  Similarity=-0.009  Sum_probs=107.5

Q ss_pred             ceEEEEeccCCeeEeEEEeCCceEEEEEcCCCCCEEEEE-eCCCcEEEEecCCCCc--eeeeeecCCceeeEEEEEecCC
Q psy988            3 KTVRLWHISRKECLCCFQHIDFVTAICFHPRDDRYFLSG-SLDGKLRLWNIPDKKV--AVWNEVEGQTKLITAANFCENG   79 (408)
Q Consensus         3 g~i~vwd~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~t~-~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~   79 (408)
                      ..|+-.++.+.+....+.....+.+++|++ ..+.|.-. ..++.|.--++.....  .....+......+..+++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            357888888777666666677788999998 55555544 3456677666654221  1112233333456778887766


Q ss_pred             CEEEEE-ecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--CCCeEEEEEccCcccceeec
Q psy988           80 KFAVVG-SYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--NDSRIRLYDLRDLNLSCKYK  156 (408)
Q Consensus        80 ~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~  156 (408)
                      ..|..+ ...+.|.+.+++.........        ........++++|...+|+...  ..+.|.-.++..........
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~--------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFR--------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEE--------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEc--------CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            655554 455789999988765332221        1123578899998777777654  34567777775443332222


Q ss_pred             CccccccceEEEEecCCCEEEEe-ecCceEEEeeec
Q psy988          157 GYVNVSSQIKASFSHDGKYIVSG-SENQCIYIWKTH  191 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~  191 (408)
                      .  ....+..+++++.++.|+.+ ...+.|...++.
T Consensus       161 ~--~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         161 E--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             S--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             c--ccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            2  22335678888877776665 345677777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.21  E-value=0.043  Score=45.62  Aligned_cols=67  Identities=10%  Similarity=0.089  Sum_probs=44.0

Q ss_pred             eeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCC---CCeEEE
Q psy988           68 KLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPG---EDKILV  134 (408)
Q Consensus        68 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~  134 (408)
                      ...++|+|.|+|+++++--..|.|++++..+........................++++|+   ..++..
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            4567999999999877764579999998877665443332222212222357889999984   445544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.15  E-value=0.039  Score=43.89  Aligned_cols=62  Identities=13%  Similarity=0.070  Sum_probs=37.9

Q ss_pred             ceeeeeccCCCCCeEEEe-cCCCeEEEEEcCCCeeeeEEeeccceeceeEEEEcC-CCCEEEEe
Q psy988          251 RKISGIEPMPGEDKILVT-SNDSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSH-DGKYIVSG  312 (408)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  312 (408)
                      .....++++||+++|+++ +..++|++|++.............-....-.+.+.+ +|.+.+++
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            456778889998877665 667899999987543332222111222344678876 45554443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.064  Score=40.82  Aligned_cols=159  Identities=9%  Similarity=-0.015  Sum_probs=98.3

Q ss_pred             eCCceEEEEEcCCCCCEEEE-EeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEE-ecCCEEEEEeccC
Q psy988           21 HIDFVTAICFHPRDDRYFLS-GSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVG-SYDGRCIFYTTDQ   98 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~   98 (408)
                      +...+.+++|.+ ..+.|.- -..++.|+..++.+....  ..+......+..+++..-+..|+.+ ...+.|.+.+++.
T Consensus        34 ~~~~~~~ld~D~-~~~~iywsd~~~~~I~~~~l~g~~~~--~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          34 PAKVIIGLAFDC-VDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEET-TTTEEEEEETTTTEEEEEESSSCCCE--EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCcEEEEEEEe-CCCEEEEEECCCCeEEEEEcccCCcE--EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            555688899998 5554544 455678998888776554  2333333567889998766666544 4567999999886


Q ss_pred             CeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCC---CeEEEEEccCcccceeecCccccccceEEEEecCCCE
Q psy988           99 LKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSND---SRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKY  175 (408)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
                      ........        .....+..+++.|...+++.....   ..|.--++..........  .....+..+++++.++.
T Consensus       111 ~~~~~l~~--------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~--~~~~~P~glaiD~~~~~  180 (263)
T d1npea_         111 TQRRVLFD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--DNLGLPNGLTFDAFSSQ  180 (263)
T ss_dssp             CSCEEEEC--------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC--TTCSCEEEEEEETTTTE
T ss_pred             ceEEEEec--------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee--ecccccceEEEeecCcE
Confidence            54322111        111367899999988888766432   234444555433222222  12234567899888777


Q ss_pred             EEEee-cCceEEEeeecc
Q psy988          176 IVSGS-ENQCIYIWKTHH  192 (408)
Q Consensus       176 l~~~~-~dg~i~i~d~~~  192 (408)
                      |+.+. ..+.|...++..
T Consensus       181 lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         181 LCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             EEEEETTTTEEEEEETTE
T ss_pred             EEEEeCCCCEEEEEECCC
Confidence            76653 466787777753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.70  E-value=0.12  Score=42.60  Aligned_cols=105  Identities=10%  Similarity=0.032  Sum_probs=62.1

Q ss_pred             CeEEEeeCCCCCeEEEe-eC----CCeEEEEEccCcccceeecCccccccceEEEEecCCCEEEEeecC-----------
Q psy988          119 KISGIEPMPGEDKILVT-SN----DSRIRLYDLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGSEN-----------  182 (408)
Q Consensus       119 ~v~~~~~~~~~~~l~~~-~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------  182 (408)
                      .+....++|++++++.+ +.    .-.|+++|+.+++.+......   .....++|.+|++.|+....+           
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            34567889999998875 22    346999999999865422111   112357899999987754322           


Q ss_pred             -----ceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeec
Q psy988          183 -----QCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQM  234 (408)
Q Consensus       183 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  234 (408)
                           ..+..+.+.++...-.        .+.........+..+..++++++++...
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~--------~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDI--------LCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCE--------EEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccCCcceEEEEECCCCccccc--------cccccccCCceEEeeeccCCcceeeEEe
Confidence                 2466666654322111        1111111223466677888988887654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.41  E-value=0.15  Score=40.31  Aligned_cols=163  Identities=15%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             ceEEEEEcCCCCCEEEEEeC------------CCcEEEEecCCCCceeee-eecCC-----ceeeEEEEE--ecCCC-EE
Q psy988           24 FVTAICFHPRDDRYFLSGSL------------DGKLRLWNIPDKKVAVWN-EVEGQ-----TKLITAANF--CENGK-FA   82 (408)
Q Consensus        24 ~v~~~~~sp~~~~~l~t~~~------------dg~i~iw~~~~~~~~~~~-~~~~~-----~~~v~~~~~--~~~~~-~l   82 (408)
                      ..-.|...| ++..+++++.            .|.|.++|+++....... .+.+.     .-....+.+  .++|. +|
T Consensus        36 G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          36 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            345688888 8877766542            389999998775432211 11110     011233333  34555 34


Q ss_pred             EEEe---cCCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee--C-------------CCeEEEE
Q psy988           83 VVGS---YDGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS--N-------------DSRIRLY  144 (408)
Q Consensus        83 ~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-------------dg~i~i~  144 (408)
                      ++..   ...+|.+|++....... ........  ......+++++..++..+++-.  .             -+...+|
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l-~~~~~v~~--~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEE-EEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeE-EEEeecCC--ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            4443   34678888876443211 11222111  1123578888888887777621  1             1223344


Q ss_pred             EccCcccceeecCccccccceEEEEecCCCEEEEee-cCceEEEeeeccc
Q psy988          145 DLRDLNLSCKYKGYVNVSSQIKASFSHDGKYIVSGS-ENQCIYIWKTHHD  193 (408)
Q Consensus       145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  193 (408)
                      ....++......   .......++++|++++|+++. ..+.|+.|++...
T Consensus       192 ~~~~~~~~~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         192 YYSPNDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EECSSCEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             EEcCCceEEEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            443333222222   223366799999998877664 4678999998643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.16  E-value=0.21  Score=39.43  Aligned_cols=148  Identities=11%  Similarity=0.111  Sum_probs=79.5

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEe------cCCCEEEEEec-C---CEEEEEeccCCeee-
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFC------ENGKFAVVGSY-D---GRCIFYTTDQLKYH-  102 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~-d---g~i~iw~~~~~~~~-  102 (408)
                      ...+++....++-|.+||++ |+.+  ..+.  .+.+..+..-      .....++.++. +   .+|.+|.+...... 
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l--~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKML--HSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEE--EECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEE--Eecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            45667776777779999996 4443  2332  2334443332      12223455552 2   36888887643221 


Q ss_pred             EEEEEeeccccccCCCCeEEEee--CCC-CC-eEEEeeCCCeEEEEEccC---cc----cceeecCccccccceEEEEec
Q psy988          103 TQIHVRSTRGKNATGRKISGIEP--MPG-ED-KILVTSNDSRIRLYDLRD---LN----LSCKYKGYVNVSSQIKASFSH  171 (408)
Q Consensus       103 ~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~----~~~~~~~~~~~~~~~~~~~~~  171 (408)
                      ......... .......+..+++  ++. +. ++++...+|.+..|.+..   +.    .++.+..   ...+-.|.+..
T Consensus       114 ~~~~~~~~p-~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDd  189 (353)
T d1h6la_         114 QSITDPNRP-IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADD  189 (353)
T ss_dssp             EECSCSSSC-EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEET
T ss_pred             ccccccccc-cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeC
Confidence            111100000 0011124566666  554 43 455667789998887742   22    2223322   23455788999


Q ss_pred             CCCEEEEeecCceEEEeee
Q psy988          172 DGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       172 ~~~~l~~~~~dg~i~i~d~  190 (408)
                      ....|+.+-++..+..++.
T Consensus       190 e~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             TTTEEEEEETTTEEEEEES
T ss_pred             CCCcEEEecCccceEEEEe
Confidence            9899999988776655554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.67  E-value=0.36  Score=38.10  Aligned_cols=122  Identities=12%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             eeeecc--CCC-CC-eEEEecCCCeEEEEEcC---CC----eeeeEEeeccceeceeEEEEcCCCCEEEEecCCceEEEe
Q psy988          253 ISGIEP--MPG-ED-KILVTSNDSRIRLYDLR---DL----NLSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW  321 (408)
Q Consensus       253 i~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  321 (408)
                      +..+|+  ++. +. ++++...+|.+..|.+.   .+    ++++.+..   ...+-.|.+.+..+.|..+-++..|..+
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCCCcEEEecCccceEEE
Confidence            344444  443 33 45566778998888763   23    23333433   3356688999999999999887666555


Q ss_pred             eccccCccccccccCccccceeee--eeccceEEEEecCCchhhhhccCCCCCCCcccEEEEEecCCeEEEEeCCCC
Q psy988          322 KTHHDYAKFSSVRRDRNDFWEGIK--AHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLVSADFNGVIRVFLNKTK  396 (408)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  396 (408)
                      +.......       ....+....  .....+..|+.-....            .+|-+|+|.-.|++..||+..+.
T Consensus       207 ~a~~~~~~-------~~~~i~~~~g~~l~~D~EGlaiy~~~~------------~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         207 SAEPDGGS-------NGTVIDRADGRHLTPDIEGLTIYYAAD------------GKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             ESSTTSCS-------CCEEEEECSSSSCCSCEEEEEEEECGG------------GCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EeccCCCc-------cceeeecccCccccCCccccEEEEcCC------------CCeEEEEEcCCCCeEEEEecCCC
Confidence            54422110       001111111  1345667777543110            04556666666889999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.15  E-value=0.34  Score=34.62  Aligned_cols=167  Identities=11%  Similarity=0.154  Sum_probs=99.0

Q ss_pred             CceEEEEeccCCeeEeEEE--------------eCC--ceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeecC
Q psy988            2 DKTVRLWHISRKECLCCFQ--------------HID--FVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEG   65 (408)
Q Consensus         2 Dg~i~vwd~~~~~~~~~~~--------------h~~--~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~   65 (408)
                      |..+.+-|+..|+.++.+-              ...  .|.+++..  +.+..++|+......+|-++.++...+..+.+
T Consensus        67 dfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPp  144 (313)
T d2hu7a1          67 GRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPG  144 (313)
T ss_dssp             SEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred             ceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCC
Confidence            5556667777776655432              112  34555554  77888899999999999999998876666654


Q ss_pred             Cc-------eeeEEEEEe-cCCCEEEEEec-CCEEEEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEee
Q psy988           66 QT-------KLITAANFC-ENGKFAVVGSY-DGRCIFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTS  136 (408)
Q Consensus        66 ~~-------~~v~~~~~~-~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  136 (408)
                      ..       ..|..+.+- ++..-++++.. .|.+++++...+                   .++.....+.. .+++..
T Consensus       145 FsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gn-KV~sdy  204 (313)
T d2hu7a1         145 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGM-KVTAGL  204 (313)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTS-CEEEEE
T ss_pred             cceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCc-eeeecc
Confidence            32       223344332 33333555555 677888776554                   34444455533 334442


Q ss_pred             C---CCeEEEEEccCccccee-ecCc----cccccceEEEEecCCCEEEEeecCceEEEeee
Q psy988          137 N---DSRIRLYDLRDLNLSCK-YKGY----VNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       137 ~---dg~i~i~d~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      +   +....-+|+++++.... +...    -....+.-+-+.|+++.++.+-.||.-++|.-
T Consensus       205 Et~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         205 ETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             EESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence            2   12222457776554322 1111    11223344568999999899999999999864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.22  E-value=1.2  Score=36.65  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             eCCceEEEEEcCCCCCEEEEEeCCCcEEEEecCCCCceeeeeec------CCceeeEEEEEecC
Q psy988           21 HIDFVTAICFHPRDDRYFLSGSLDGKLRLWNIPDKKVAVWNEVE------GQTKLITAANFCEN   78 (408)
Q Consensus        21 h~~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~   78 (408)
                      .-+..++|+|.| ++++|++--.+|.|++++..++.......+.      .-......++|+|+
T Consensus        25 ~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            445778999999 9988877645799999998887655433332      12356788999985

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.80  E-value=1.6  Score=33.84  Aligned_cols=250  Identities=10%  Similarity=0.076  Sum_probs=125.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCce--eeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccC---Ceee-EEEEE
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVA--VWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQ---LKYH-TQIHV  107 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~-~~~~~  107 (408)
                      +...+++-+.+|.|+--.+...+..  .-..++. ...+..+........|+.-+..|.++...+..   .... ...++
T Consensus         4 ~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi   82 (323)
T d1wp5a_           4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI   82 (323)
T ss_dssp             CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred             CCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccc
Confidence            6778899999999986654321000  0011222 23455554445555666667788766554332   2111 00111


Q ss_pred             eeccccccCCCCeEEEe-eC--CCCCeEEEeeCCCeEEEEEccCccc------ceeecCccccccceEEEEecCCCEEEE
Q psy988          108 RSTRGKNATGRKISGIE-PM--PGEDKILVTSNDSRIRLYDLRDLNL------SCKYKGYVNVSSQIKASFSHDGKYIVS  178 (408)
Q Consensus       108 ~~~~~~~~~~~~v~~~~-~~--~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~  178 (408)
                      ...... .....+..+. ..  +...+|+..+..|.++..++.....      ...+.. .....+..+....+...++.
T Consensus        83 ~~ll~l-~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L-~~~D~l~~v~~~~~~~~i~l  160 (323)
T d1wp5a_          83 ANIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             GGTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEE
T ss_pred             eeeecc-cCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccc-cccccccceeccCCCeEEEE
Confidence            111111 1122333333 22  2467889999999999998754321      111221 22233555666667778888


Q ss_pred             eecCceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeecc
Q psy988          179 GSENQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEP  258 (408)
Q Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  258 (408)
                      ++..|.+..|+...-               .........|..+.+.++...                       +....+
T Consensus       161 ~t~~G~~lrf~~~~v---------------r~~gr~a~GV~~ikL~~~D~v-----------------------v~~~~~  202 (323)
T d1wp5a_         161 VTHNGYALWFDESEV---------------SIVGVRAAGVKGMNLKEGDYI-----------------------VSGQLI  202 (323)
T ss_dssp             EETTSEEEEEEGGGS---------------CBCCSSCCCEECCCCCTTCCE-----------------------EEEEEE
T ss_pred             EEecceeeEeecccc---------------cccCccccccccccccccccc-----------------------chhhhc
Confidence            899999988876431               111111233444433332221                       222333


Q ss_pred             CCCCCeEEEecCCCeEEEEEcCCCee-------eeEEeec-cceeceeEEEEcCCCCEEEEecCCceEEEeecc
Q psy988          259 MPGEDKILVTSNDSRIRLYDLRDLNL-------SCKYKGY-VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTH  324 (408)
Q Consensus       259 ~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  324 (408)
                      .+++..+++.+..|..+.-.+.....       +..+... .....+..+....+...|+..+..|.+.-.++.
T Consensus       203 ~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         203 TSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             cccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            45566777788888877766543221       1111111 111234444444455556556666666555544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=2  Score=32.36  Aligned_cols=62  Identities=11%  Similarity=0.098  Sum_probs=33.3

Q ss_pred             EEEeCC----CcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEec---------CCEEEEEeccCCeee
Q psy988           39 LSGSLD----GKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSY---------DGRCIFYTTDQLKYH  102 (408)
Q Consensus        39 ~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~  102 (408)
                      +.|+.+    ..+.+||+++++......+......-..+.  -+++.++.|+.         -..+.+||..+....
T Consensus         9 v~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1           9 TAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             EECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEE--ECCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence            455443    358899999887654333332222222222  25666666653         135667787766543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.23  E-value=4.2  Score=32.18  Aligned_cols=179  Identities=7%  Similarity=0.023  Sum_probs=98.6

Q ss_pred             CceEEEEEcCCCCCEEEEEeCCCcEEEEecCC-----------CCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEE
Q psy988           23 DFVTAICFHPRDDRYFLSGSLDGKLRLWNIPD-----------KKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRC   91 (408)
Q Consensus        23 ~~v~~~~~sp~~~~~l~t~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   91 (408)
                      ....-++.++ ...+++.|+.++ +.|-.++.           .....  ...  -..|..++|+.+  .|+.. .++.+
T Consensus        37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~--~~~--ip~v~~vafs~d--~l~v~-~~~~l  107 (381)
T d1xipa_          37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW--EKE--IPDVIFVCFHGD--QVLVS-TRNAL  107 (381)
T ss_dssp             SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE--EEE--CTTEEEEEEETT--EEEEE-ESSEE
T ss_pred             cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCccee--ccC--CCCeEEEEeeCC--EEEEE-eCCCE
Confidence            3466788887 566777777764 66766421           11111  111  125888999754  44444 56678


Q ss_pred             EEEeccCCeeeEEEEEeeccccccCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceeecC---ccccccceEEE
Q psy988           92 IFYTTDQLKYHTQIHVRSTRGKNATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKYKG---YVNVSSQIKAS  168 (408)
Q Consensus        92 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~  168 (408)
                      ..++............        ...++..+.++|  ..++....++.+.++++..++......+   ..-...+.+++
T Consensus       108 ~~~~~~~l~~~~~~~~--------~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~  177 (381)
T d1xipa_         108 YSLDLEELSEFRTVTS--------FEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVL  177 (381)
T ss_dssp             EEEESSSTTCEEEEEE--------CSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEE
T ss_pred             EEEEeecccccccccc--------ccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEE
Confidence            8888776443322221        123677777776  4566677789999999988754332211   11123355677


Q ss_pred             EecCCCEEEEeecCceEEEe-eeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeee
Q psy988          169 FSHDGKYIVSGSENQCIYIW-KTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQ  233 (408)
Q Consensus       169 ~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  233 (408)
                      |++.|+.++++..++ ..+- ++.            ....+.........+.++.|-.+..++++.
T Consensus       178 ws~kgkq~v~~~g~~-~q~k~~i~------------~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         178 LKDRSFQSFAWRNGE-MEKQFEFS------------LPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ETTSCEEEEEEETTE-EEEEEEEC------------CCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCCcEEEEEeCCCc-eeeccCCC------------CccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            777777777663322 1111 111            001111112234567888888777766544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.50  E-value=4.8  Score=31.87  Aligned_cols=143  Identities=10%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             CCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcc-------cceeecCccccccceEEEEecCCCEEEEeecCceEEEeee
Q psy988          118 RKISGIEPMPGEDKILVTSNDSRIRLYDLRDLN-------LSCKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  190 (408)
Q Consensus       118 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (408)
                      ....-+++++....+++|+.+ .+.+..+..-+       ....+........+..++|+.+  .+++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            356678888877788888776 46777653211       0011111111224667788644  45554 4456777766


Q ss_pred             ccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeeccCCCCCeEEEecC
Q psy988          191 HHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIEPMPGEDKILVTSN  270 (408)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (408)
                      ..-....            ....-..++..+.++|.                                     .++....
T Consensus       113 ~~l~~~~------------~~~~~~~~~~~~~~~p~-------------------------------------~~~l~~~  143 (381)
T d1xipa_         113 EELSEFR------------TVTSFEKPVFQLKNVNN-------------------------------------TLVILNS  143 (381)
T ss_dssp             SSTTCEE------------EEEECSSCEEEEEECSS-------------------------------------EEEEEET
T ss_pred             ecccccc------------ccccccccccceecCCc-------------------------------------eeEEEec
Confidence            4311110            00111223344444332                                     2445566


Q ss_pred             CCeEEEEEcCCCeeeeEEee---ccceeceeEEEEcCCCCEEEEec
Q psy988          271 DSRIRLYDLRDLNLSCKYKG---YVNVSSQIKASFSHDGKYIVSGS  313 (408)
Q Consensus       271 d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~  313 (408)
                      ++.+.++++.+++......+   ..-...+.+++|++.|..++++.
T Consensus       144 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         144 VNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             TSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            78889999988764333221   11123466778888888877764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.28  E-value=4.3  Score=28.92  Aligned_cols=221  Identities=11%  Similarity=0.120  Sum_probs=110.6

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCceeeeeecCCceeeEEEEEecCCCEEEEEecCCEEEEEeccCCeeeEEEEEeecc--
Q psy988           34 DDRYFLSGSLDGKLRLWNIPDKKVAVWNEVEGQTKLITAANFCENGKFAVVGSYDGRCIFYTTDQLKYHTQIHVRSTR--  111 (408)
Q Consensus        34 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--  111 (408)
                      +.++|+++...|.+.++-+..++...   +.  ..+|.... .|...      -|..+.+-|+..++....+......  
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vk---Lt--kePI~~~~-~Pk~~------ldfi~f~RDV~kGkE~Hai~~~Nlk~~   92 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVK---LN--REPINSVL-DPHYG------VGRVILVRDVSKGAEQHALFKVNTSRP   92 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEE---CC--SSCCSEEC-EECTT------BSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEE---Ee--cccccCcC-CCccC------cceEEEEeehhcCcceeeEEEEccCCC
Confidence            55688888888999999998887652   22  22232221 12211      2333444555555444333332222  


Q ss_pred             cc----c-cCCCCeEEEeeCCCCCeEEEeeCCCeEEEEEccCcccceee--cCcc-----ccccceEEE-EecCCCEEEE
Q psy988          112 GK----N-ATGRKISGIEPMPGEDKILVTSNDSRIRLYDLRDLNLSCKY--KGYV-----NVSSQIKAS-FSHDGKYIVS  178 (408)
Q Consensus       112 ~~----~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~-----~~~~~~~~~-~~~~~~~l~~  178 (408)
                      +.    . ...-.|.+++.. +.+..++|+......+|-++.++.....  .+..     ....+..+. +.+..+-+++
T Consensus        93 GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~  171 (313)
T d2hu7a1          93 GEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFT  171 (313)
T ss_dssp             TCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             CeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEE
Confidence            11    0 111245566654 4556677877778899988877654321  1110     111122222 2222233444


Q ss_pred             eec-CceEEEeeeccceeeeeecccCCCccccccccccceEEEEEEeCCcceeeeecCCCCCCCceeeecCCCceeeeec
Q psy988          179 GSE-NQCIYIWKTHHDYAKFSSVRRDRNDFWEGIKAHNAVVTCAVFAPCPELIIAQMEPDKSESTGYVLNATGRKISGIE  257 (408)
Q Consensus       179 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (408)
                      +.- .|.+++++...                       +.++.....+..+. ++.                        
T Consensus       172 adl~SG~lri~tpke-----------------------GS~~~ay~~~gnKV-~sd------------------------  203 (313)
T d2hu7a1         172 SNLSSGGLRVFDSGE-----------------------GSFSSASISPGMKV-TAG------------------------  203 (313)
T ss_dssp             EETTTEEEEEECCSS-----------------------EEEEEEEECTTSCE-EEE------------------------
T ss_pred             EecccCCEEEecCCC-----------------------CcccceeEccCcee-eec------------------------
Confidence            444 66777766532                       33333333333222 100                        


Q ss_pred             cCCCCCeEEEecCCCeEEEEEcCCCeeeeE-Eeec----cceeceeEEEEcCCCCEEEEecCCceEEEeec
Q psy988          258 PMPGEDKILVTSNDSRIRLYDLRDLNLSCK-YKGY----VNVSSQIKASFSHDGKYIVSGSENQCIYIWKT  323 (408)
Q Consensus       258 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  323 (408)
                             +-+.++..-| -+|+++++.... ++..    .....+.-+-+.|++++++.+-.||.=++|.-
T Consensus       204 -------yEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         204 -------LETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             -------EEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             -------cCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence                   0111222233 447776553322 1111    12234555669999999999999999999864