Domain ID e1lyb.1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: acid protease
  • F: Asp
UID: 000020674
Type: Automatic domain
Parent: e3qvcA1
Range: C:1-97,D:106-346
Ligands: NAG
PDB: 1lyb
PDB Description: CATHEPSIN D
UniProt: P07339
Hsap BLAST neighbor: P07339
Species:

Structure of domain e1lyb.1

Domains in the same chain:

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e1lyb.1 C:1-97,D:106-346 cradle loop barrel RIFT-related acid protease

Domains in the same PDB:

e1lyb.2 A:1-97,B:106-346 cradle loop barrel RIFT-related acid protease
e1lyb.1 C:1-97,D:106-346 cradle loop barrel RIFT-related acid protease

Structural contacts of domain e1lyb.1 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1lyb.1 D:x,y,z->C:X,Y,Z RIFT-related Interaction Interface Pymol
e1lyb.1 C:X,Y,Z->D:x,y,z RIFT-related Interaction Interface Pymol
e1lyb.2 D:-Y+1,X-Y+1,Z-1/3->B:x,y,z RIFT-related Interaction Interface Pymol
e1lyb.2 C:-Y+1,X-Y+1,Z-1/3->B:x,y,z RIFT-related Interaction Interface Pymol
e1lyb.2 D:-Y+1,X-Y+1,Z-1/3->A:x,y,z RIFT-related Interaction Interface Pymol
e1lyb.2 C:X-Y+1,X+1,Z-1/6->B:x,y,z RIFT-related Interaction Interface Pymol
e1lyb.2 D:x,y,z->B:-Y+1,X-Y+1,Z-1/3 RIFT-related Interaction Interface Pymol
e1lyb.2 D:x,y,z->A:-Y+1,X-Y+1,Z-1/3 RIFT-related Interaction Interface Pymol
e1lyb.2 D:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol
e1lyb.1 C:x,y,z->D:X-Y,X,Z-1/6 RIFT-related Interaction Interface Pymol
e1lyb.1 D:X-Y,X,Z-1/6->C:x,y,z RIFT-related Interaction Interface Pymol
e1lyb.2 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e1lyb.2 C:x,y,z->B:-Y+1,X-Y+1,Z-1/3 RIFT-related Interaction Interface Pymol