| UID: | 000051865 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1lbuA1 |
| Range: | B:6-78 |
| Ligands: | ZN |
| PDB: | 1gxd |
| PDB Description: | 72 KDA TYPE IV COLLAGENASE |
| UniProt: | P08253 |
| Hsap BLAST neighbor: | P08253 |
| Species: | Homo sapiens |
Structure of domain e1gxdB2
Domains in the same chain:
| e1gxdB2 | B:6-78 | PGBD-like | PGBD-like | PGBD-like |
| e1gxdB6 | B:87-187,B:365-418 | Zincin-like | Metalloproteases ("zincins") catalytic domain | Metalloproteases ("zincins") catalytic domain |
| e1gxdB5 | B:190-248 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdB4 | B:249-306 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdB3 | B:309-364 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdB1 | B:432-631 | beta-propeller-like | beta-propeller | 4-bladed |
Domains in the same PDB:
| e1gxdA4 | A:1-80 | PGBD-like | PGBD-like | PGBD-like |
| e1gxdA3 | A:81-187,A:365-420 | Zincin-like | Metalloproteases ("zincins") catalytic domain | Metalloproteases ("zincins") catalytic domain |
| e1gxdA1 | A:188-248 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdA6 | A:249-306 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdA2 | A:307-364 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdA5 | A:421-631 | beta-propeller-like | beta-propeller | 4-bladed |
| e1gxdB2 | B:6-78 | PGBD-like | PGBD-like | PGBD-like |
| e1gxdB6 | B:87-187,B:365-418 | Zincin-like | Metalloproteases ("zincins") catalytic domain | Metalloproteases ("zincins") catalytic domain |
| e1gxdB5 | B:190-248 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdB4 | B:249-306 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdB3 | B:309-364 | Kringle-like | Kringle-like | Kringle-like |
| e1gxdB1 | B:432-631 | beta-propeller-like | beta-propeller | 4-bladed |
| e1gxdC1 | C:1-180 | OB-fold | TIMP-like | TIMP-like |
| e1gxdD1 | D:1-180 | OB-fold | TIMP-like | TIMP-like |
Structural contacts of domain e1gxdB2 of H-group "PGBD-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1gxdB2 | B:x,y,z->B:-X+1,Y,-Z+1/2 | PGBD-like | Interaction Interface Pymol |
| e1gxdB2 | B:-X+1,Y,-Z+1/2->B:x,y,z | PGBD-like | Interaction Interface Pymol |
| e1gxdA2 | B:x,y,z->A:X-1/2,-Y+1/2,-Z | Kringle-like | Interaction Interface Pymol |
