ECOD: domain e1vymB2

Domain ID e1vymB2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_C

UID:	000071079
Type:	Automatic domain
Parent:	e1plqA2
Range:	B:127-255
PDB:	1vym
PDB Description:	PROLIFERATING CELL NUCLEAR ANTIGEN
UniProt:	P12004
Hsap BLAST neighbor:	P12004
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1vymB2

Domains in the same chain:

Download Pymol

e1vymB1	B:1-126	DNA clamp	DNA clamp	DNA clamp
e1vymB2	B:127-255	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e1vymA1	A:1-126	DNA clamp	DNA clamp	DNA clamp
e1vymA2	A:127-255	DNA clamp	DNA clamp	DNA clamp
e1vymB1	B:1-126	DNA clamp	DNA clamp	DNA clamp
e1vymB2	B:127-255	DNA clamp	DNA clamp	DNA clamp
e1vymC1	C:1-126	DNA clamp	DNA clamp	DNA clamp
e1vymC2	C:127-255	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e1vymB2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vymB2	B:x,y,z->B:-X,Y,-Z	DNA clamp	Interaction Interface Pymol
e1vymB1	B:x,y,z->B:-X,Y,-Z	DNA clamp	Interaction Interface Pymol
e1vymB2	B:-X,Y,-Z->B:x,y,z	DNA clamp	Interaction Interface Pymol
e1vymB1	B:-X,Y,-Z->B:x,y,z	DNA clamp	Interaction Interface Pymol
e1vymA1	B:x,y,z->A:X,Y,Z	DNA clamp	Interaction Interface Pymol
e1vymA2	B:x,y,z->A:-X+1/2,Y-1/2,-Z	DNA clamp	Interaction Interface Pymol
e1vymA1	B:x,y,z->A:-X+1/2,Y-1/2,-Z+1	DNA clamp	Interaction Interface Pymol
e1vymA2	B:x,y,z->A:-X+1/2,Y-1/2,-Z+1	DNA clamp	Interaction Interface Pymol
e1vymA2	B:x,y,z->A:X,Y-1,Z	DNA clamp	Interaction Interface Pymol
e1vymC2	B:X-1/2,Y+1/2,Z-1->C:x,y,z	DNA clamp	Interaction Interface Pymol
e1vymC1	B:x,y,z->C:-X+1/2,Y-1/2,-Z	DNA clamp	Interaction Interface Pymol