ECOD: domain e3isdA3

Domain ID e3isdA3

A: a+b three layers
X: Nucleotidyltransferase-like
H: Nucleotidyltransferase
T: Nucleotidyltransferase
F: DNA_pol_B_thumb,DNA_pol_B_palm

UID:	000372980
Type:	Automatic domain
Parent:	e2fmpA3
Range:	A:149-335
Ligands:	F2A MN
PDB:	3isd
PDB Description:	DNA polymerase beta
UniProt:	P06746
Hsap BLAST neighbor:	P06746
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3isdA2	A:10-91	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3isdA1	A:92-148	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3isdA3	A:149-335	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Domains in the same PDB:

e3isdA2	A:10-91	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3isdA1	A:92-148	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3isdA3	A:149-335	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Structural contacts of domain e3isdA3 of H-group "Nucleotidyltransferase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3isdA3	A:x,y,z->A:-X,Y-1/2,-Z+1	Nucleotidyltransferase	Interaction Interface Pymol
e3isdA2	A:-X,Y-1/2,-Z+1->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e3isdA3	A:-X,Y-1/2,-Z+1->A:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol
e3isdA3	A:x,y,z->A:X,Y,Z-1	Nucleotidyltransferase	Interaction Interface Pymol
e3isdA3	A:X,Y,Z-1->A:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol
e3isdA1	A:x,y,z->A:X-1,Y,Z-1	SAM/DNA-glycosylase	Interaction Interface Pymol
e3isdA2	A:x,y,z->A:X-1,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol