ECOD: domain e4ko8B1

Domain ID e4ko8B1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: CDC48_N

UID:	001111086
Type:	Automatic domain
Parent:	e1qcsA1
Range:	B:17-106
PDB:	4ko8
PDB Description:	Transitional endoplasmic reticulum ATPase
UniProt:	P55072
Hsap BLAST neighbor:	P55072
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e4ko8B1

Domains in the same chain:

Download Pymol

e4ko8B1	B:17-106	cradle loop barrel	RIFT-related	double psi
e4ko8B3	B:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4ko8B9	B:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ko8B10	B:372-460	Histone-like	Histone-related	AAA+ ATPase lid domain

Domains in the same PDB:

e4ko8A1	A:14-106	cradle loop barrel	RIFT-related	double psi
e4ko8A3	A:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4ko8A9	A:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ko8A10	A:372-469	Histone-like	Histone-related	AAA+ ATPase lid domain
e4ko8B1	B:17-106	cradle loop barrel	RIFT-related	double psi
e4ko8B3	B:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4ko8B9	B:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ko8B10	B:372-460	Histone-like	Histone-related	AAA+ ATPase lid domain

Structural contacts of domain e4ko8B1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ko8A10	B:x,y,z->A:X,Y,Z	Histone-related	Interaction Interface Pymol
e4ko8A3	B:x,y,z->A:-Y,X-Y,Z	Cdc48 domain 2-like	Interaction Interface Pymol
e4ko8A10	B:x,y,z->A:-Y,X-Y,Z	Histone-related	Interaction Interface Pymol
e4ko8B1	B:x,y,z->B:-Y,X-Y,Z	RIFT-related	Interaction Interface Pymol
e4ko8B1	B:-Y,X-Y,Z->B:x,y,z	RIFT-related	Interaction Interface Pymol