ECOD: domain e3fvkA2

Domain ID e3fvkA2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: Lig_chan-Glu_bd

UID:	001520456
Type:	Automatic domain
Parent:	e1mqiA3
Range:	A:415-520,A:748-790
Ligands:	8DX GOL SO4
PDB:	3fvk
PDB Description:	Glutamate receptor, ionotropic kainate 1
UniProt:	P39086
Hsap BLAST neighbor:	P39086
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3fvkA2	A:415-520,A:748-790	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3fvkA3	A:521-747	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3fvkA2	A:415-520,A:748-790	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3fvkA3	A:521-747	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3fvkB1	B:415-520,B:748-790	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3fvkB2	B:521-747	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3fvkA2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1mqiA3	A:X,Y,Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkB1	A:X,Y,Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkB1	A:X,Y,Z-1->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkB1	A:X,Y,Z-1->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkB1	A:X-1,Y+1,Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkA2	A:x,y,z->A:X-1,Y,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkA2	A:X-1,Y,Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkA2	A:X-1,Y,Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3fvkB1	A:x,y,z->B:X,Y-1,Z+1	Periplasmic binding protein-like II	Interaction Interface Pymol