T-group (topology)
375.1.1 Rubredoxin-related
Ligands and drugs
24,288
Member domains
5,806
with ligand contacts (≤ 4 Å)
23.9% of members
5,260
with DrugDomain annotations
21.7% of members
432
with a DrugBank compound
1.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 375.1.1 belongs to X-group 375 Rubredoxin-like, which binds 5.1 ligand superclasses per 20 proteins, narrower than 81% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01717 | AP5 | Bis(Adenosine)-5'-Pentaphosphate | 80 |
| DB16833 | ADP | Adenosine disphosphate | 33 |
| DB00171 | ATP | ATP | 19 |
| DB00131 | AMP | Adenosine phosphate | 17 |
| DB17057 | SR7 | SRT-1720 | 12 |
| DB03566 | SPD | Spermidine | 9 |
| DB14128 | NAD | Nadide | 7 |
| DB00118 | SAM | Ademetionine | 6 |
| DB00123 | LYS | Lysine | 6 |
| DB00149 | LEU | Leucine | 6 |
| DB00127 | SPM | Spermine | 5 |
| DB03345 | BME | Mercaptoethanol | 5 |
| DB03478 | OAD | 2'-O-Acetyl Adenosine-5-Diphosphoribose | 5 |
| DB04381 | CRD | Crotonaldehyde | 5 |
| DB03103 | TYD | Thymidine-5'- Diphosphate | 3 |
| DB03403 | C | Cytidine-5'-Monophosphate | 3 |
| DB06819 | CLT | Phenylbutyric acid | 3 |
| DB00142 | GLU | Glutamic acid | 2 |
| DB00167 | — | Isoleucine | 2 |
| DB00199 | ERY | Erythromycin | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 4,916 |
| MGmetal | MAGNESIUM ION | 1,246 |
| CDmetal | CADMIUM ION | 205 |
| OHX | osmium (III) hexammine | 148 |
| FEmetal | FE (III) ION | 102 |
| CL | CHLORIDE ION | 85 |
| AP5 | BIS(ADENOSINE)-5'-PENTAPHOSPHATE | 80 |
| NAmetal | SODIUM ION | 64 |
| SRmetal | STRONTIUM ION | 60 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 35 |
| Kmetal | POTASSIUM ION | 34 |
| FE2metal | FE (II) ION | 20 |
| SPD | SPERMIDINE | 19 |
| UNX | UNKNOWN ATOM OR ION | 15 |
| AMP | ADENOSINE MONOPHOSPHATE | 14 |
| 3HE | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | 12 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 12 |
| 8L9 | 5-[[3,5-bis(chloranyl)phenyl]sulfonylamino]-2-[(5-bromanyl-4-fluoranyl-2-methyl-phenyl)sulfamoyl]benzoic acid | 9 |
| OCZ | (1S)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1- carboxamide | 9 |
| KMQ | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate | 8 |