Citrus Sinensis ID: 000069
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2442 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DIC0 | 1577 | Probable global transcrip | yes | no | 0.183 | 0.284 | 0.504 | 1e-129 | |
| P51531 | 1590 | Probable global transcrip | yes | no | 0.183 | 0.281 | 0.504 | 1e-129 | |
| P51532 | 1647 | Transcription activator B | no | no | 0.182 | 0.270 | 0.468 | 1e-128 | |
| A7Z019 | 1606 | Transcription activator B | no | no | 0.183 | 0.278 | 0.5 | 1e-127 | |
| Q8K1P7 | 1613 | Transcription activator B | no | no | 0.183 | 0.277 | 0.5 | 1e-127 | |
| Q3TKT4 | 1613 | Transcription activator B | no | no | 0.183 | 0.277 | 0.5 | 1e-127 | |
| P25439 | 1638 | ATP-dependent helicase br | yes | no | 0.175 | 0.261 | 0.503 | 1e-127 | |
| P22082 | 1703 | Transcription regulatory | yes | no | 0.203 | 0.292 | 0.443 | 1e-125 | |
| O94421 | 1680 | SWI/SNF chromatin-remodel | yes | no | 0.199 | 0.289 | 0.450 | 1e-122 | |
| Q9UTN6 | 1199 | Chromatin structure-remod | no | no | 0.173 | 0.352 | 0.492 | 1e-121 |
| >sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/482 (50%), Positives = 325/482 (67%), Gaps = 34/482 (7%)
Query: 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLL 80
KFNVLLTTYEY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LL
Sbjct: 827 KFNVLLTTYEYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILL 884
Query: 81 TGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLII 140
TGTPLQN L ELWALLNFLLP IF S F QWFN PF G+ L+EEE +LII
Sbjct: 885 TGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD----LNEEETILII 940
Query: 141 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGN--- 195
RLH+VLRPF+LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L + G+
Sbjct: 941 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 1000
Query: 196 ----SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGK 243
+++ N++M+LR ICNHPY+ Q H EE +H Y ++ R GK
Sbjct: 1001 KKGKGGAKTLMNTIMQLRKICNHPYMFQ-HIEES---FAEHLGYSNGVINGAELYRASGK 1056
Query: 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 303
E+LDR+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ K
Sbjct: 1057 FELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKK 1116
Query: 304 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363
FN+ S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V V
Sbjct: 1117 FNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRV 1176
Query: 364 LRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL-RECKKEEAA 422
LR TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1177 LRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEED 1236
Query: 423 PVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVT 482
V DD+ LN ++AR E E D+F +D RR E+ ++ R + D LPS ++
Sbjct: 1237 EVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIK 1291
Query: 483 DD 484
DD
Sbjct: 1292 DD 1293
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Mus musculus (taxid: 10090) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2442 | ||||||
| 255551623 | 3502 | conserved hypothetical protein [Ricinus | 0.470 | 0.328 | 0.571 | 0.0 | |
| 357478577 | 3312 | Helicase swr1 [Medicago truncatula] gi|3 | 0.469 | 0.346 | 0.534 | 0.0 | |
| 357478579 | 3310 | Helicase swr1 [Medicago truncatula] gi|3 | 0.469 | 0.346 | 0.534 | 0.0 | |
| 449433367 | 2086 | PREDICTED: uncharacterized protein LOC10 | 0.350 | 0.409 | 0.668 | 0.0 | |
| 449495482 | 2108 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.350 | 0.405 | 0.668 | 0.0 | |
| 20197603 | 3571 | putative SNF2 subfamily transcription re | 0.273 | 0.187 | 0.730 | 0.0 | |
| 297736923 | 2266 | unnamed protein product [Vitis vinifera] | 0.230 | 0.248 | 0.882 | 0.0 | |
| 13603721 | 3574 | putative chromatin remodeling protein SY | 0.275 | 0.188 | 0.732 | 0.0 | |
| 30683833 | 3529 | ATPase splayed [Arabidopsis thaliana] gi | 0.275 | 0.190 | 0.732 | 0.0 | |
| 30683830 | 3574 | ATPase splayed [Arabidopsis thaliana] gi | 0.275 | 0.188 | 0.732 | 0.0 |
| >gi|255551623|ref|XP_002516857.1| conserved hypothetical protein [Ricinus communis] gi|223543945|gb|EEF45471.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1276 bits (3302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 759/1329 (57%), Positives = 879/1329 (66%), Gaps = 180/1329 (13%)
Query: 15 REKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 74
+EKIVHQKFNVLLTTYEYLMNKHDRPKLSKI WHYIIIDEGHRIKNASCKLNA+LKHYQS
Sbjct: 1090 KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAELKHYQS 1149
Query: 75 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 134
+HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESN D+S DEALLSEE
Sbjct: 1150 AHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNADSSADEALLSEE 1209
Query: 135 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG 194
ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERL+RC ASAYQKLLMKRVEENLGSIG
Sbjct: 1210 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCNASAYQKLLMKRVEENLGSIG 1269
Query: 195 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 254
NSK RSVHNSVMELRNICNHPYLSQLH +EVD LIPKH+LPPI+RLCGKLEMLDR+LPKL
Sbjct: 1270 NSKARSVHNSVMELRNICNHPYLSQLHVDEVDNLIPKHFLPPIIRLCGKLEMLDRILPKL 1329
Query: 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314
KATDHRVLFFSTMTRLLDVME+YLT K+YRYLRLDGHTSG +RGALI++FN+ +SP+FIF
Sbjct: 1330 KATDHRVLFFSTMTRLLDVMEEYLTMKKYRYLRLDGHTSGNERGALIEQFNKSNSPYFIF 1389
Query: 315 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 374
LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE
Sbjct: 1390 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1449
Query: 375 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLL 434
QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALND+L
Sbjct: 1450 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDIL 1509
Query: 435 ARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEP-LPPLPSRLVTDDDLKALYEAM 493
ARSESEIDVFESVDKQRRE+E ATW L+ G G D LPPLPSRLVTDDDLK+ YE M
Sbjct: 1510 ARSESEIDVFESVDKQRREDERATWNSLLLGHGMDVPGLLPPLPSRLVTDDDLKSFYEVM 1569
Query: 494 KIYDAPKTGVSPN--VGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQA 551
K+YD PKTG + N VGVKRKG+ +G LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQ
Sbjct: 1570 KLYDVPKTGPASNIGVGVKRKGQSVGGLDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQV 1629
Query: 552 ESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE---------------PPAPLLPPPPPSL 596
+S +SP +KEE E++LP S A+ TE PP + PPP ++
Sbjct: 1630 DSPESPSMKEEITERNLPKDDSVPVVAICVTEAQAPLPPLPPPQAMEPPPQAMEPPPQAV 1689
Query: 597 DPPQLQQSKEVTPPSK--RGRGRPRRADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASAS 654
+PP LQQSKEVTPPSK RGR R +DKSP VV PA SG K + G S S
Sbjct: 1690 EPPPLQQSKEVTPPSKRGRGRPRRTTSDKSPTAVVHPASSGNGKADSGLQKGIELIPSKS 1749
Query: 655 L-PGSTTVS--GVSG-SAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTP-------- 702
P S++ S GV+ +A +GIAP S+PTT V V P SQS +A TP
Sbjct: 1750 FVPDSSSGSDIGVTNIAAPQASIGIAPCSEPTTPSVSVTPSSQSTAASVVTPGLQSNSAS 1809
Query: 703 ----------------------------------------MQPKGRGRRIQSGEQVPRRR 722
+Q +GRGR+ QSG Q PRRR
Sbjct: 1810 VVTPGSQSTSASVVTPGFLSNSASVITPGVQSAPAGSPVLIQSRGRGRKAQSGVQAPRRR 1869
Query: 723 GKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVS 782
GKK +LPA + P P N+Q S+N + T G VSS+P A S+S
Sbjct: 1870 GKKQEAILPAPQN---LAVPAPSINDQSHDTSVNQL---VSVTSGTVSSVPMAHCQSSLS 1923
Query: 783 PSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVP------QPSPQFSSVSMQTKGQSRK 836
+ + SGT + S V AL+S+ +APP+ Q S S Q KGQ RK
Sbjct: 1924 AATTELTSGTTN-SEPVIALDSK------SAPPISSNSTTVQCSAPCPSAPTQMKGQGRK 1976
Query: 837 TQS--GGVTPRRRGKRQALGSPPISDVSAG---PESKSNLQSENNSGGLRLSKSVSMGKQ 891
TQS G TPRRRG++QA+ SP D + ++SE SG +V M Q
Sbjct: 1977 TQSGAGAGTPRRRGRKQAMISPVYPDALVSQVISDKLLQMKSEEPSGS---KATVVMSSQ 2033
Query: 892 DALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGS 951
+ ++ + + + S +G D+K A+Q V Q+ QPI SS+ G+
Sbjct: 2034 E------THGCEQKDIDLDKSTKFSGQDKKSAKQLDDVAQTRQPIC------SSAMNIGT 2081
Query: 952 TPAQVPSMDLGNVASDTKEVLSENSSSKG--------GVIPIL--ALSNMKAVERVNIQS 1001
+P Q+ S D+ + AS T E +ENS SK G I +L ++N + E V Q
Sbjct: 2082 SPGQILSADMRDAASLTMEFSAENSPSKAKVGEQGNVGSISLLTPTITNT-STEVVLSQC 2140
Query: 1002 FEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHVPGAVAARTPSIST--SAP 1059
E+KAC PA+ E + GS EG + ++ V + + + I++ S
Sbjct: 2141 SEDKAC----------PAVGHPRESFPGSAAVEGSAKSVPQVAVEITSSSQPIASCPSVS 2190
Query: 1060 AASLSIPPQASVSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQN 1119
+S SI P+A + VKR GRKT EAP+ RGKKQ + D A D+++N S N
Sbjct: 2191 PSSQSILPEA---IQVKRQGRKTLNRAEAPKHRGKKQVPVSTAVDALAGQDSEINSQSHN 2247
Query: 1120 KSRDSFGSKTISLRSKQ---------------------------------------ETAD 1140
KSRD G +T+SLRS+Q +TAD
Sbjct: 2248 KSRDLSGRRTMSLRSRQDSDLKEAAHIVQEVCLPSSLVGQDPKRKETTGIPAFSRIQTAD 2307
Query: 1141 VNDVARVMKEIFSETCSSKAKTGDSSLNEGKDASIRALSSSSAIAEVAKKQSSDDKTCSV 1200
V DVARVMKEIFSETC+SK+K G+S NEG SI L S + + EV K Q ++K S
Sbjct: 2308 VTDVARVMKEIFSETCTSKSKMGESFRNEGTSTSITPLLSKTHV-EVVKNQRLEEKLPS- 2365
Query: 1201 TPTVETPPP 1209
T+E P P
Sbjct: 2366 --TLEAPIP 2372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478577|ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|355510629|gb|AES91771.1| Helicase swr1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357478579|ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|355510630|gb|AES91772.1| Helicase swr1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449433367|ref|XP_004134469.1| PREDICTED: uncharacterized protein LOC101206586, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449495482|ref|XP_004159854.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206586, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|20197603|gb|AAD29835.2| putative SNF2 subfamily transcription regulator [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297736923|emb|CBI26124.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|13603721|gb|AAK31908.1|AF247809_1 putative chromatin remodeling protein SYD [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|30683833|ref|NP_850117.1| ATPase splayed [Arabidopsis thaliana] gi|330253005|gb|AEC08099.1| ATPase splayed [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|30683830|ref|NP_850116.1| ATPase splayed [Arabidopsis thaliana] gi|330253006|gb|AEC08100.1| ATPase splayed [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2442 | ||||||
| TAIR|locus:2062840 | 3574 | SYD "SPLAYED" [Arabidopsis tha | 0.375 | 0.256 | 0.540 | 4.4e-256 | |
| UNIPROTKB|F1S594 | 866 | LOC100622433 "Uncharacterized | 0.183 | 0.517 | 0.454 | 4.2e-102 | |
| WB|WBGene00016868 | 1336 | C52B9.8 [Caenorhabditis elegan | 0.194 | 0.354 | 0.440 | 7.4e-100 | |
| UNIPROTKB|E1C2F7 | 1546 | E1C2F7 "Uncharacterized protei | 0.215 | 0.340 | 0.423 | 1.7e-96 | |
| UNIPROTKB|K7GT64 | 980 | LOC100622433 "Uncharacterized | 0.217 | 0.541 | 0.392 | 7e-96 | |
| TAIR|locus:2150270 | 1064 | CHR23 "chromatin remodeling 23 | 0.174 | 0.401 | 0.448 | 8.1e-96 | |
| MGI|MGI:99603 | 1577 | Smarca2 "SWI/SNF related, matr | 0.215 | 0.334 | 0.419 | 3.3e-95 | |
| UNIPROTKB|D4A4J2 | 1506 | Smarca2 "Protein Smarca2" [Rat | 0.215 | 0.349 | 0.419 | 5.3e-95 | |
| UNIPROTKB|E9PTG1 | 1597 | Smarca2 "Protein Smarca2" [Rat | 0.215 | 0.329 | 0.419 | 7.5e-95 | |
| UNIPROTKB|A5PKK5 | 1554 | SMARCA2 "SMARCA2 protein" [Bos | 0.215 | 0.339 | 0.419 | 7.8e-95 |
| TAIR|locus:2062840 SYD "SPLAYED" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2272 (804.8 bits), Expect = 4.4e-256, Sum P(5) = 4.4e-256
Identities = 518/959 (54%), Positives = 608/959 (63%)
Query: 15 REKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 74
+E+IVHQKFNVLLTTYEYLMNKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY S
Sbjct: 846 KEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVS 905
Query: 75 SHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXX 134
SHRLLLTGTP IFNSSEDFSQWFNKPF+SNG++S +
Sbjct: 906 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEE 965
Query: 135 XXXXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG 194
IINRLHQVLRPFVLRRLKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIG
Sbjct: 966 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIG 1025
Query: 195 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 254
N+K R+VHNSVMELRNICNHPYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKL
Sbjct: 1026 NAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKL 1085
Query: 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314
KATDHRVLFFSTMTRLLDVMEDYLT K Y+YLRLDG TSGGDRGALID FN+ SPFFIF
Sbjct: 1086 KATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIF 1145
Query: 315 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 374
LLSIRAGGVGVNLQAADTVI+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEE
Sbjct: 1146 LLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEE 1205
Query: 375 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXX 434
QVRASAEHKLGVANQSITAGFFDNNTSAEDR+EYLESLLRE KKEE
Sbjct: 1206 QVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLI 1265
Query: 435 XRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDG-EPLPPLPSRLVTDDDLKALYEAM 493
R ESEID+FES+DKQR+E EM TW L+ G G+D +P +PSRLVT+DDLK LYE M
Sbjct: 1266 ARRESEIDIFESIDKQRKENEMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETM 1325
Query: 494 KIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAES 553
K+ D P VG+KRK +G LDT YGRGKRAREVRSYEE+ TEEEFEK+CQ ES
Sbjct: 1326 KLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTES 1385
Query: 554 SDSPKLKEEGLEKSLPTVVSSSAPAVYSTEXXXXXXXXXXXXXXXXX-----XXXSKEVT 608
DSP+ K EG E+SL +S+ P S++ KE T
Sbjct: 1386 PDSPQGKGEGSERSLAND-TSNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLKEET 1444
Query: 609 PPSKXXXXXXXXADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXA 668
P K DK+ PV L A S T TG + S++A+ A
Sbjct: 1445 QPIKRGRGRPKRTDKALTPVSLSAVSRT------QATGNAISSAATGLDFVSSDKRLEAA 1498
Query: 669 QHVMVGIAPSSQPTTAFVPVAPGSQSASACPS-TPMQPKGRGRRIQSGEQVPRRRGKKIG 727
H +A +S + P PG QS A P+ TP++ +GRGR G RG+++
Sbjct: 1499 SHPTSSLALTSPDLSG--P--PGFQSLPASPAPTPIRGRGRGRSRGRGAG----RGRRVE 1550
Query: 728 LVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 787
VL ++ I + + T+ +E+ + S + VS +P A + +P V
Sbjct: 1551 GVLHGSNSSI-TQRTETATSLASDAEATKFALPRSASEI--VSRVPKANEGSTSNPDQVS 1607
Query: 788 G-QSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQS--GGVTP 844
S T S AA + +L+ + K + K + GV+
Sbjct: 1608 PVHSATTALRSDKAA-DKDLDAPPGFDSGSHVQTLNVLENSSERKAFAVKKRPLIQGVSS 1666
Query: 845 RRRG-KRQALGSPPISD---VSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN 900
+ G +Q L P + + GP N S G SKS S G+ Q ++
Sbjct: 1667 QHPGPNKQPLDLPVSTSSTLLGGGPVQNQNAVSSVCDG----SKSPSEGRTYTALQGVTT 1722
Query: 901 KIQVQPCGVATS-ADVAGP-DQKPAEQSVRVVQSNQP---INLPATHDSSSQPS-GSTP 953
+++ +D P +P +V ++N P LPA + PS G TP
Sbjct: 1723 APSDATLPMSSQPSDATLPMSSQPVGSTVEAQEANVPSLPAALPAKRRVRNLPSRGETP 1781
|
|
| UNIPROTKB|F1S594 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00016868 C52B9.8 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C2F7 E1C2F7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7GT64 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2150270 CHR23 "chromatin remodeling 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:99603 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4A4J2 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PTG1 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A5PKK5 SMARCA2 "SMARCA2 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2442 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 1e-111 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 4e-84 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-70 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 8e-28 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 8e-21 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 8e-21 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 1e-13 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 6e-12 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-09 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-07 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 4e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-05 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 8e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-05 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 4e-04 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-111
Identities = 181/375 (48%), Positives = 243/375 (64%), Gaps = 23/375 (6%)
Query: 13 YSREKIVHQ-KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 71
+ RE+++ KF+V +T++E M ++ L + W YIIIDE HRIKN + L+ ++
Sbjct: 259 HQREELLVAGKFDVCVTSFE--MAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRL 316
Query: 72 YQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALL 131
+ +++RLL+TGTPLQNNL ELWALLNFLLP IF+S+E F +WF +
Sbjct: 317 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF--------------QIS 362
Query: 132 SEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG 191
E + ++ +LH+VLRPF+LRRLK VE LP K E +++ S QK K + +
Sbjct: 363 GENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL 422
Query: 192 SIGNSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 249
+ N+ G + + N M+LR CNHPYL Q AE +L V GK+ +LD+
Sbjct: 423 DVVNAGGERKRLLNIAMQLRKCCNHPYLFQ-GAEPGPPYTTGEHL---VENSGKMVLLDK 478
Query: 250 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 309
LLPKLK D RVL FS MTRLLD++EDYL ++ Y+Y R+DG+T G DR A ID FN+ S
Sbjct: 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGS 538
Query: 310 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369
F+FLLS RAGG+G+NL AD VI++D+DWNPQVDLQAQ RAHRIGQK++V V RF T
Sbjct: 539 EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598
Query: 370 QTVEEQVRASAEHKL 384
T+EE+V A KL
Sbjct: 599 YTIEEKVIERAYKKL 613
|
Length = 1033 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2442 | |||
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.94 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.92 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.91 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.89 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.82 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.76 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.76 | |
| PTZ00110 | 545 | helicase; Provisional | 99.76 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.75 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.73 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.73 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.73 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.73 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.72 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.72 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.72 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.72 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.7 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.69 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.69 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.67 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.66 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.65 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.63 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.6 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.56 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.55 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.55 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.54 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.51 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.48 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.48 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.48 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.46 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.45 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.44 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.42 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.42 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.42 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.4 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.39 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.35 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.34 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.32 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.31 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.31 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.28 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.27 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.26 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.26 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.26 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.26 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.25 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.25 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.25 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.24 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.2 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.2 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.19 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.19 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.18 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.17 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.15 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.14 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.14 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.12 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.11 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.1 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.08 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.04 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.02 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.02 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.98 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 98.98 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 98.97 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.94 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.92 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.91 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.91 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 98.91 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 98.91 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.87 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 98.87 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 98.77 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 98.75 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 98.67 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.64 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 98.64 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 98.62 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.6 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 98.6 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 98.59 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.58 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.57 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 98.57 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 98.55 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.53 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 98.5 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.48 | |
| PF14619 | 74 | SnAC: Snf2-ATP coupling, chromatin remodelling com | 98.48 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.45 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 98.41 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 98.33 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.3 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.19 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 98.14 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.13 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 98.03 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 98.02 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.95 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.94 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.86 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 97.82 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.77 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.74 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.65 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 97.64 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 97.56 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 97.56 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 97.41 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 97.35 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 97.32 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.31 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 97.25 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.11 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 97.05 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 96.96 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 96.86 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 96.8 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 96.72 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 96.63 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 96.49 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 96.33 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.31 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 96.27 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.19 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 96.11 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 95.94 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 95.77 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 95.43 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 95.26 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 95.25 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 94.86 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 94.43 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 94.38 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 94.24 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 93.09 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 93.02 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 92.94 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 92.84 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 92.5 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 92.42 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 91.47 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 90.4 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 90.34 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 89.87 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 89.87 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 89.78 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 87.75 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 87.15 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 86.03 | |
| KOG0442 | 892 | consensus Structure-specific endonuclease ERCC1-XP | 84.9 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 84.6 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 80.49 |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-92 Score=870.81 Aligned_cols=501 Identities=53% Similarity=0.877 Sum_probs=448.0
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHH-hcccccEEEEEeccCCCCHHHHHHH
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWAL 95 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALK-qLkSrrRLLLTGTPLQNNLeELwSL 95 (2442)
++..++|+|++|||+|+++ ++..|.+++|.++||||+|||||+.|+++..|. .|.+.+||||||||+||++.|||+|
T Consensus 488 qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaL 565 (1157)
T KOG0386|consen 488 QQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWAL 565 (1157)
T ss_pred HHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHH
Confidence 5566899999999999999 899999999999999999999999999999998 7899999999999999999999999
Q ss_pred HhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccc
Q 000069 96 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 175 (2442)
Q Consensus 96 LNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceM 175 (2442)
|||+.|.+|++...|.+||+.||.+.+ +..++++++..++|+|||++||||+|||+|++|+.+||++++++++|.|
T Consensus 566 LNFlLP~IFnS~~~FeqWFN~PFantG----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~m 641 (1157)
T KOG0386|consen 566 LNFLLPNIFNSCKAFEQWFNQPFANTG----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDM 641 (1157)
T ss_pred HHHhccchhhhHhHHHHHhhhhhhhcC----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheeh
Confidence 999999999999999999999999988 3478899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccc-----CCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCC-ChhhhhccHHHHHHH
Q 000069 176 SAYQKLLMKRVEENLGSI-----GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDR 249 (2442)
Q Consensus 176 SaeQRkLYKrLeenL~Sl-----gsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l-~dLIRsSGKLEaLdr 249 (2442)
|++|+.+|+++...-... ++...+.++|.+|+||+||||||+|..... .+..++. ..+++.+|||++|++
T Consensus 642 SalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~----~~~~~~~~~dL~R~sGKfELLDR 717 (1157)
T KOG0386|consen 642 SALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN----SYTLHYDIKDLVRVSGKFELLDR 717 (1157)
T ss_pred hhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc----ccccccChhHHHHhccHHHHHHh
Confidence 999999999998654332 445567899999999999999999854333 3333333 489999999999999
Q ss_pred HhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc
Q 000069 250 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 329 (2442)
Q Consensus 250 LL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa 329 (2442)
+|+++++.|||||+|+||+.++++|++||..++++|+|+||.|+.++|..+++.||.++++||+||+||+|||+|+|||.
T Consensus 718 iLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQt 797 (1157)
T KOG0386|consen 718 ILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQT 797 (1157)
T ss_pred hhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHHH
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYL 409 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreELL 409 (2442)
||+||+||.+|||+.+.||.+|+|||||+++|+|+||++.+++||.|+.++.+|++++.++|++|.|+++++.++++.+|
T Consensus 798 adtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~L 877 (1157)
T KOG0386|consen 798 ADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFL 877 (1157)
T ss_pred cceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCHHHHHHHHHhChhhHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhHHHHH
Q 000069 410 ESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKAL 489 (2442)
Q Consensus 410 EsLLEe~keEEe~eVLDDDELNeLLARSEeELelFqrmD~ErreeEle~W~kll~~~g~dgE~~P~lp~rL~~d~EL~~~ 489 (2442)
+.+++....++..++.+++.||++|+|+++|+++|.+||.++++.+... ....||+.+++++++
T Consensus 878 e~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~----------------~~k~rl~ee~e~p~~ 941 (1157)
T KOG0386|consen 878 EQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQ----------------EKKPRLVEEAELPAD 941 (1157)
T ss_pred HHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhc----------------cccchhhhhhhcHHH
Confidence 9999987776667899999999999999999999999999986644211 114689999999854
Q ss_pred HHHhhhcCCCCCCCCCCccccccccccCcccccccCCCcccceeeccccCCCHHHHHHHHhccCCCCh
Q 000069 490 YEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP 557 (2442)
Q Consensus 490 ye~~e~~~~~~~~v~~~~~~krk~e~~~~~d~q~~GRG~R~Rk~v~Y~d~ltE~q~lk~~~~e~~d~~ 557 (2442)
.-.... + ......++ .....+|||+|+|+.|.|+|.|||.||+++.+.+..+..
T Consensus 942 i~~~~~------~----~~~~~~~~----~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~ 995 (1157)
T KOG0386|consen 942 IYKRDQ------G----VERLSEEE----EEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDS 995 (1157)
T ss_pred HHhcch------h----hhhhhhhh----hhhccccccccccceeecccccchhhhhhhccccccccc
Confidence 432211 0 00001011 112337999999999999999999999998887665544
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2442 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 2e-68 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 3e-36 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 3e-35 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 6e-34 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 1e-16 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 601 bits (1552), Expect = 0.0
Identities = 176/454 (38%), Positives = 245/454 (53%), Gaps = 37/454 (8%)
Query: 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLT 81
KFNVLLTTYEY++ DR +L I+W ++ +DE HR+KNA L L ++ ++R+L+T
Sbjct: 345 KFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLIT 402
Query: 82 GTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIIN 141
GTPLQNN++EL AL+NFL+P F ++ +EE I+
Sbjct: 403 GTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ-----------------DEEQEEYIH 445
Query: 142 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN----LGSIGNSK 197
LH+ ++PF+LRRLK VE LP K ER++R E S Q K + L +
Sbjct: 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGG 505
Query: 198 GRSVHNSVMELRNICNHPYLSQLHAEEVDT------LIPKHYLPPIVRLCGKLEMLDRLL 251
S+ N + EL+ NHPYL E V + ++ L ++ GK+ +LD+LL
Sbjct: 506 HFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLL 565
Query: 252 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 311
+LK HRVL FS M R+LD++ DYL+ K + RLDG R ID FN DS
Sbjct: 566 TRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND 625
Query: 312 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 371
F+FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA ARAHRIGQK V+V R + T
Sbjct: 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685
Query: 372 VEEQVRASAEHKLGVANQSITAGFFDNNTSA---EDRREYLESLLRE-----CKKEEAAP 423
VEE+V A K+ + I+ G D N E L ++L+ +
Sbjct: 686 VEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQK 745
Query: 424 VLDDDALNDLLARSESEIDVFESVDKQRREEEMA 457
L+D L+D+L +E + + + EE
Sbjct: 746 KLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFL 779
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2442 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.97 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.95 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.95 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.95 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.94 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.93 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.9 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.9 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.87 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.86 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.86 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.85 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.85 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.84 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.84 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.84 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.83 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.82 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.82 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.81 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.81 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.79 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.73 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.72 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.71 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.71 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.7 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.7 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.7 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.69 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.69 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.68 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.66 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.65 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.64 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.41 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.6 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.6 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.59 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.57 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.55 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.54 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.53 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.52 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.49 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.44 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.41 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.37 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.31 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.31 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.3 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.26 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.25 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.21 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.21 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.19 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.19 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.16 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.14 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 98.89 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 98.83 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 98.83 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 98.78 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 98.71 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 98.65 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 98.15 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 97.81 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 97.53 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 97.47 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 97.44 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 97.37 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 97.36 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 97.33 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 97.32 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 97.3 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 97.26 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 97.23 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 97.15 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 97.09 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 96.98 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 96.96 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 96.9 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 96.65 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 96.11 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 95.88 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 94.86 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 93.31 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 87.47 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 85.96 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=573.70 Aligned_cols=383 Identities=44% Similarity=0.678 Sum_probs=312.1
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
..+|+|+||||+++.+ +...|..++|++|||||||++||..+++++++..+.+.+||+|||||++|++.|||+||+||
T Consensus 343 ~~~~dvvitTy~~l~~--~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL 420 (800)
T 3mwy_W 343 TMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFL 420 (800)
T ss_dssp CCCCSEEEECTTHHHH--THHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHH
T ss_pred cccCCEEEecHHHHHh--hHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHh
Confidence 3578999999999988 56678899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHH
Q 000069 100 LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 179 (2442)
Q Consensus 100 dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQ 179 (2442)
.|..|.....|..... . ......+.+|+.+|+||++||++.++...||++.+.+++|.|++.|
T Consensus 421 ~p~~~~~~~~~~~~~~--------~---------~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q 483 (800)
T 3mwy_W 421 MPGRFTIDQEIDFENQ--------D---------EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQ 483 (800)
T ss_dssp CSCCC---------CC--------T---------THHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHH
T ss_pred CccccCchhhhccccc--------c---------hhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHH
Confidence 9999986655531110 0 1122347789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc----CCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCC------CCChhhhhccHHHHHHH
Q 000069 180 KLLMKRVEENLGSI----GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDR 249 (2442)
Q Consensus 180 RkLYKrLeenL~Sl----gsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~------~l~dLIRsSGKLEaLdr 249 (2442)
+.+|+.+....... .......+++.+++||++|+||+++.............. ....++..++|+.+|.+
T Consensus 484 ~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ 563 (800)
T 3mwy_W 484 TEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQ 563 (800)
T ss_dssp HHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHH
Confidence 99999987653221 112334688999999999999999865544432221111 12345678999999999
Q ss_pred HhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc
Q 000069 250 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 329 (2442)
Q Consensus 250 LL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa 329 (2442)
+|..+...++|+||||+|+.++++|+++|..+|+.|.+|+|+++..+|++++++||.++...++||+||++||+||||+.
T Consensus 564 lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 564 LLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp HHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred HHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHHH
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYL 409 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreELL 409 (2442)
|++||+||++|||..++||+||+|||||+++|+||+|++.+|+|++|++++.+|+.+.+.+|+.+..+....
T Consensus 644 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~-------- 715 (800)
T 3mwy_W 644 ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKY-------- 715 (800)
T ss_dssp CCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC---------------------
T ss_pred cceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999998765433210
Q ss_pred HHHHHHHhhhccCCCCCHHHHHHHHHhChh
Q 000069 410 ESLLRECKKEEAAPVLDDDALNDLLARSES 439 (2442)
Q Consensus 410 EsLLEe~keEEe~eVLDDDELNeLLARSEe 439 (2442)
.....++.++|.+||.....
T Consensus 716 ----------~~~~~~~~~el~~ll~~g~~ 735 (800)
T 3mwy_W 716 ----------TKKNEPNAGELSAILKFGAG 735 (800)
T ss_dssp -------------CCCCHHHHHHHHSSCSS
T ss_pred ----------ccccCCCHHHHHHHHHcchH
Confidence 00123567777777766553
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2442 | ||||
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-43 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 5e-30 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 5e-28 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 2e-23 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 3e-20 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 3e-14 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 1e-06 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 4e-04 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 5e-04 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 160 bits (406), Expect = 2e-43
Identities = 89/320 (27%), Positives = 144/320 (45%), Gaps = 32/320 (10%)
Query: 162 ELPEKIERLVRCEASAYQKLL----MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 217
LP KIE++V C + QK L +K+ + S +S+ L+ +CNHP L
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 67
Query: 218 -------SQLHAEEVDTLIPKHYLPP--IVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTM 267
+ + L P++Y +L GK+ +LD +L + T +V+ S
Sbjct: 68 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNY 127
Query: 268 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 327
T+ LD+ E ++Y Y+RLDG S R ++++FN SP FIF+LS +AGG G+NL
Sbjct: 128 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 187
Query: 328 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 387
A+ +++FD DWNP D QA AR R GQK+ + R + T+EE++ HK ++
Sbjct: 188 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALS 247
Query: 388 NQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDAL---NDLL--ARSESEID 442
+ + + L L L++ L +D R +
Sbjct: 248 SCVVDEE---QDVERHFSLGELRELFS----------LNEKTLSDTHDRFRCRRCVNGRQ 294
Query: 443 VFESVDKQRREEEMATWRKL 462
V D +++ W
Sbjct: 295 VRPPPDDSDCTCDLSNWHHC 314
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2442 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.83 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.8 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.78 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.76 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.75 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.74 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.74 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.73 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.69 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.66 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.58 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.5 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.41 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.1 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.08 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.04 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.91 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.71 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.7 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.51 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.91 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.79 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.7 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.69 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 97.67 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.58 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.33 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 96.84 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.81 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 96.32 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 96.24 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.24 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 96.16 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 96.05 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 96.02 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 95.66 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 95.32 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.2 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 95.16 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 95.16 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 95.05 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 94.77 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 85.78 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=4.8e-40 Score=380.92 Aligned_cols=237 Identities=34% Similarity=0.547 Sum_probs=203.3
Q ss_pred HHh-hcCCccEEEEEeccccHHHHHHHHHHHHHhcccC----CCCCcchHHHHHHHHhhcCcccccchhhhhh-------
Q 000069 158 KVE-NELPEKIERLVRCEASAYQKLLMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQLHAEEV------- 225 (2442)
Q Consensus 158 DVe-kdLP~KvE~VIkceMSaeQRkLYKrLeenL~Slg----sskgrsLlNiLMQLRKICNHPyLfqleeEEV------- 225 (2442)
+|+ ++||+|.+++++|+||+.|+.+|+.+........ ......+++.+++||++||||+|+.......
T Consensus 3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~ 82 (346)
T d1z3ix1 3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGA 82 (346)
T ss_dssp GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTG
T ss_pred hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccccch
Confidence 444 5899999999999999999999999876543221 1223457888999999999999864332211
Q ss_pred hccCCCCC--CChhhhhccHHHHHHHHhhhhh-cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHH
Q 000069 226 DTLIPKHY--LPPIVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 302 (2442)
Q Consensus 226 EeLipe~~--l~dLIRsSGKLEaLdrLL~KLr-atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIID 302 (2442)
....+..+ .......|+|+.+|.++|..++ ..|+|||||++|+.++++|+++|..+|+.|.+++|+++..+|..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~ 162 (346)
T d1z3ix1 83 LDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVE 162 (346)
T ss_dssp GGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHH
T ss_pred hhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHH
Confidence 11111111 1234567899999999998875 67899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHH
Q 000069 303 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 382 (2442)
Q Consensus 303 rFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqr 382 (2442)
+||.+....+|||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||||++.+|+|++||+++..
T Consensus 163 ~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~ 242 (346)
T d1z3ix1 163 RFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 242 (346)
T ss_dssp HHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 99988777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC
Q 000069 383 KLGVANQSITAG 394 (2442)
Q Consensus 383 KLdLinKVIgAG 394 (2442)
|+.++..+++.+
T Consensus 243 K~~l~~~v~~~~ 254 (346)
T d1z3ix1 243 KKALSSCVVDEE 254 (346)
T ss_dssp HHHTSCCCCSCS
T ss_pred HHHHHHHHhCCc
Confidence 999999999764
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|