Citrus Sinensis ID: 000205

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860

MDSYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSKSVKGVASDLLVLLEKLLVKLLAAPKMEVAMNAGNPSIIGFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSLPVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAADGTADGTNLDKETYKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDVTSSQSSPSTQPIDESENDMAALLLHVMHRACISLKDYLPPEKQLRLSNMLVR

ccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHcccccccccccccHHHHccccccHHHcccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHHcHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccHHHHHcHHHHHHHHccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccc

cccHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHcccHHHEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHccccccccHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHEHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHcHccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHccccccccHEEEEEEcccccHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHccHHHHHcHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHEcccccccEEcccccccccEEEEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHccccccEHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHcccccHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccEEEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEcccccHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc

mdsyspllekarvpqpslqkFAVVSIFSKlrtspahlgpdsepgrdaitqclnssspavvDQTVREFCRLVADSKFDLSLGLLELQsalegsdpkFVTLFVKALGYLVRLGFerfngswklgatenhpfikilsSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRpffnfsilrmpfsdslSSLFVRQLVSSVASLccsfpsdalpVFEVLRGCLeylplknskeqrNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLytspfkqsggVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWkseneygfggatcdlSEELLLIFPilnlmsspsksvkGVASDLLVLLEKLLVKLLAAPKmevamnagnpsiiGFGSIIFRLLKNlwfqdqnstsRSFFLSLISTGnyrieemdegpgpwtSQLRELLLCIIdskksslpvsasQEALSTEMSMLLGAIASVLVihpslgssavdafatvgkmdpklgVPLLLAILFYSnmftrkdvvcqnklpkllgmlpsiasqsvMIPLVVQTILpmlhknakpVLYATATRLLCQTWEINdrafgslqgvlqpkllidfkseRNICISIAASIHdvcrkdpdrgVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEhsnrrrfvkekkvpgskieklldifprvifssdkkiyarelpgAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDakaesivpdrtFKAANDILKTLMRVAEESMPRSAENIALAIGALCsvlpqsahtIKSTASKFLLSWLFQHEHEHRQWSAAISIGLIssslhltdhKQKFQNITGLLEVLSSSRSILVRGAcgiglgfscQDLLTWAAaadgtadgtnldketYKIEEMELLGRTVKALSMMIFQLapssskileglsahfpvktcdvkmnvtsefsddgleddIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVenygsggersEIVLSVGSSLALPIIVAFCRgvelmddkelNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKcysnpyppiihlggmLGVVNALGagagylihvdplnssmragyaqkehpytlgplfsdpvcEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWskellntdnnikadllgsksvsqrfsndNVVMKLGLWLSHlnysgtdatARVVTVSTILRcltraprlptldwgaIIRCCMRYEAQiakglppdsaykrgiLREECIQFSLAHANQFHPLLSFLdelsdlprfktLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTsyqvynpdqksFLRVSFWNGLhhcleeasldslehipNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLhvnplqgdvQLSEVVKKMQAKAKLvrigsfpltelgKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIeiscvscypstalQFVGLLSgsccrympflildsstvlndlpvtlpsllskpgwetvaEPFMSYLWASTERIYNWVVTdvtssqsspstqpidesENDMAALLLHVMHRACIslkdylppekqlrLSNMLVR

mdsyspllekarvpqpslqKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLplknskeqrNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSKSVKGVASDLLVLLEKLLVKLLAAPKMEVAMNAGNPSIIGFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSLPVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAasihdvcrkDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIithehsnrrrfvkekkvpgskieklldifprvIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDakaesivpdrtFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAAdgtadgtnldketYKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTIlrcltraprlptldwGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKlvrigsfpltelgKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDVTSSQSSPSTQPIDESENDMAALLLHVMHRACISLkdylppekqlrlsnmlvr

MDSYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFDlslgllelqsalegsDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSKSVKGVASDllvllekllvkllAAPKMEVAMNAGNPSIIGFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSLPVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWsaaisiglissslHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWaaaadgtadgtNLDKETYKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHlggmlgvvnalgagagYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDVtssqsspstqpIDESENDMAALLLHVMHRACISLKDYLPPEKQLRLSNMLVR

********************FAVVSIFS*****************************AVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSKSVKGVASDLLVLLEKLLVKLLAAPKMEVAMNAGNPSIIGFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIID******************MSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVA*******AENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAADGTADGTNLDKETYKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDV*******************AALLLHVMHRACISLKDYL**************

***YSPLLEKARVPQPSLQKFAVVSIFSK********************QCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFS*****LFV**LV***************PVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFK**G***HIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSK*******DLLVLLEKLLVK**********************SIIFRLLKNLWF*****TSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSLPVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQP*L****KSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITH**************************PRVIFSS*****ARELPGAALLCL*********************GYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAI*****************KAANDILKTL**************IALAIGALCSVLPQS*********KFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAADGTADGTNLD***Y**EEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFP****************DGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHV************RSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELL*******FHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDP*******************************TSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCH***************************SNDNVVMKLGLWLS***************VSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAK**********GILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSY*********FLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQY********KNLVEEWSAAVRCLGKARREWVLDFLQVLHVN******QLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDVT***************NDMAALLLHVMHRACISLKDYLPPEKQLRLSNMLV*

MDSYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSKSVKGVASDLLVLLEKLLVKLLAAPKMEVAMNAGNPSIIGFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKS**********LSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAADGTADGTNLDKETYKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTD**************ESENDMAALLLHVMHRACISLKDYLPPEKQLRLSNMLVR

**SYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDS*P*RDAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPILNLMSSPSKSVKGVASDLLVLLEKLLVKLLAAPKME****AGNPSIIGFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSLPVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAADGTADGTNLDKETYKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDPL******************PLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELL********************SNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYA*IIG*NQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDVTS*****STQPIDESENDMAALLLHVMHRACISLKDYLPPEKQLRLSNMLVR

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1860	2.2.26 [Sep-21-2011]
A2AKG8		1798	Focadhesin OS=Mus musculu	yes	no	0.204	0.211	0.235	1e-09
Q5VW36		1801	Focadhesin OS=Homo sapien	yes	no	0.186	0.192	0.232	3e-08

>sp\|A2AKG8\|FOCAD_MOUSE Focadhesin OS=Mus musculus GN=Focad PE=2 SV=1	Back alignment and function desciption

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 174/442 (39%), Gaps = 62/442 (14%)

Query: 530 VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPV 589
           VP L+ +L +  +    D V  N +   L  LP++    V +  +++ I  +      P 
Sbjct: 486 VPNLIPVLMF-KLGRPLDPVSYNHI---LYTLPTLGVHKVCVGQILRVIQLL---GTTPR 538

Query: 590 LYATATRLLCQTWEINDRAFGSLQGVL----QPKLLIDFKSERNICISIAASIHDVCRKD 645
           L A   RLL   WE  DR +  LQ  +     P L +  + +    I+ AASI D+C++ 
Sbjct: 539 LRAVTLRLLTSLWEKQDRVYPELQRFMAVSDAPSLSVGKELQWEKLIAKAASIRDICKQR 598

Query: 646 P-DRGVDLILSVAA----CIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDY 700
           P   G D++ +++     C +       AL LQ L  LC+A+V+   + W+ ++   L  
Sbjct: 599 PYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPK-LSC 657

Query: 701 SLDPMLAQSLCILLRWG---AMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASA 757
            + P++ ++L  L        ++   Y      VL  LW T T          A    S 
Sbjct: 658 DMRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLW-THTQNKNPTVASAAYKSLSH 716

Query: 758 FEALTQYEVSHIDKNI-----------------LDFKQRSFEILISETNPVVLRAMEGFQ 800
           F A  ++ + H+ + I                 L      F  L++ T P VL A+E F 
Sbjct: 717 FSA-GEHTILHLPEKIRPEMPVPGELDEEESVDLSIPGACFLRLLTITAPSVLPALEEFF 775

Query: 801 VKIITHEHSNRRRFVKEKKVPG---SKIEKLLDIFPRVI---FSSDKKIYARE-LPGAAL 853
             ++  E  N  R +    + G   S   K +   P  I   + ++K+   +  L G  L
Sbjct: 776 TSLVRQEMVNMPRGIYHSALKGGVRSDQGKTVAGIPNFILKTYETNKQPGLKPGLAGGML 835

Query: 854 LCLSFTR------KDLRNQGEARGL---QNVLSGYENALIDIAASFQLSRNIFVALLSLQ 904
            C           K L     +RG    Q  L+      + ++   +  R IF+     Q
Sbjct: 836 FCYDLAMYQSKDGKPLNRLMASRGRSFKQTTLALIHEVHVQLS---EWHRAIFLP----Q 888

Query: 905 SWKFFMQRWVRAIIMSIDAKAE 926
           +W  +M R   AI+    A+ E
Sbjct: 889 AWLAYMTRAYHAILQGRIAELE 910

Potential tumor suppressor in gliomas.
Mus musculus (taxid: 10090)

>sp\|Q5VW36\|FOCAD_HUMAN Focadhesin OS=Homo sapiens GN=FOCAD PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1860
255560886		1858	conserved hypothetical protein [Ricinus	0.994	0.995	0.637	0.0
224060123		1833	predicted protein [Populus trichocarpa]	0.982	0.997	0.632	0.0
356573333		1857	PREDICTED: uncharacterized protein LOC10	0.992	0.994	0.574	0.0
449446873		1857	PREDICTED: uncharacterized protein LOC10	0.989	0.990	0.556	0.0
449521015		1836	PREDICTED: uncharacterized LOC101219246	0.980	0.992	0.554	0.0
297815026		1847	hypothetical protein ARALYDRAFT_484555 [	0.990	0.997	0.540	0.0
32250969		1841	RST1 [Arabidopsis thaliana]	0.987	0.997	0.535	0.0
42565251		1841	protein resurrection1 [Arabidopsis thali	0.987	0.997	0.534	0.0
9294472		1868	unnamed protein product [Arabidopsis tha	0.987	0.982	0.527	0.0
359488811		1751	PREDICTED: uncharacterized protein LOC10	0.648	0.689	0.634	0.0

>gi\|255560886\|ref\|XP_002521456.1\| conserved hypothetical protein [Ricinus communis] gi\|223539355\|gb\|EEF40946.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 2397 bits (6212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1192/1869 (63%), Positives = 1462/1869 (78%), Gaps = 20/1869 (1%)

Query: 1    MDSYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVV 60
            MDSY+PLLEK RVPQPS+QKFAV+SIFSKLR++P +L PDS+PGRDAI+QCL+SSSPAVV
Sbjct: 1    MDSYTPLLEKTRVPQPSIQKFAVISIFSKLRSAPKYLDPDSDPGRDAISQCLHSSSPAVV 60

Query: 61   DQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWK 120
            DQTVRE CRLV+DS  D+S GLLELQSALEG+D KFV+LFVK LG+L+R+GF R +GSW+
Sbjct: 61   DQTVRELCRLVSDSTLDISRGLLELQSALEGTDEKFVSLFVKGLGFLIRVGFNRNHGSWR 120

Query: 121  LGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFS 180
             G+ ENHPF++IL  R EV TELVQQVLLFM +N  LGMV+VCEFL+P   FSIL +PFS
Sbjct: 121  FGSPENHPFVRILLCRTEVQTELVQQVLLFMAKNMRLGMVKVCEFLKPLAVFSILSIPFS 180

Query: 181  DSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKE----QRNLE--FV 234
            +S SSLF RQL+ S+AS CCS P +ALPV ++L GCL+YLP KNS       R L+  + 
Sbjct: 181  NSTSSLFARQLIPSMASFCCSLPEEALPVLKLLMGCLKYLPHKNSDVGILVYRILDCYYF 240

Query: 235  LDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHV 294
            L+C+VD+Y VVLR LV  GLLVT+AQ+ G+EL  T+LSL T    +SGG E IVE++K +
Sbjct: 241  LECVVDAYTVVLRSLVQTGLLVTKAQLFGVELSETILSLLTHVHGRSGGAEPIVELVKRL 300

Query: 295  LVAQFELRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGAT 354
            +V Q +L L Y PELSSVIL  F+ILI SELEHEQL +LK ++FL+ WK ENE  F  AT
Sbjct: 301  IVIQKDLSLCYIPELSSVILSSFAILIQSELEHEQLSLLKLVIFLVKWKGENECAFDRAT 360

Query: 355  CDLSEELLLIFPILNLMSSPSKSVKGVASDLLVLLEKLLVKLLAAPKMEVAMNAGNPSII 414
            C LSEE+L  FP++NLMSS S+S+KG A+DLL++LEKLLVKL  A ++E+      PSI 
Sbjct: 361  CALSEEVLFTFPVINLMSSTSRSMKGAAADLLIMLEKLLVKLFRASRIELVTEGQFPSIS 420

Query: 415  GFGSIIFRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIID 474
              GSI++RLL+ LWFQDQ S S SFF++  S+ +   + M +    W SQLRE  + IID
Sbjct: 421  SPGSIVYRLLQQLWFQDQFSPSTSFFVNFASSDD---KGMHDQAKFWASQLREYSMRIID 477

Query: 475  SKKSSLPVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLL 534
             +KSS PVS ++E   TE+  LL AI  VLV+H SLG  AVD  AT+G MDPK GVPLLL
Sbjct: 478  RRKSSFPVSQTEETFLTEIPRLLSAITGVLVMHQSLGYIAVDLLATIGIMDPKQGVPLLL 537

Query: 535  AILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATA 594
            A+LFYSN+FTR D   Q  LPKLL MLPS+AS  VMIPLV+QTILPML K+ K VLYAT 
Sbjct: 538  AVLFYSNIFTRNDAKNQEILPKLLSMLPSLASHFVMIPLVIQTILPMLQKDGKRVLYATG 597

Query: 595  TRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLIL 654
             RLLCQTW INDRAF SLQ VL P+   +FKSER ICI +A SI DVCRK+PDRGVD+IL
Sbjct: 598  ARLLCQTWAINDRAFSSLQAVLLPEGFTEFKSERTICIGLATSIRDVCRKNPDRGVDIIL 657

Query: 655  SVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILL 714
            SV+ACIES+DPII++ GLQSLAYLCEADVIDFYTAWDVIAK++L YS DP+LAQS+C+LL
Sbjct: 658  SVSACIESQDPIIRSFGLQSLAYLCEADVIDFYTAWDVIAKYVLGYSSDPVLAQSICMLL 717

Query: 715  RWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNIL 774
            RWGAMDAEAY EASR VL+ILW  G + H    +QWAKARA AF+AL+QYEVSH++K IL
Sbjct: 718  RWGAMDAEAYPEASRNVLQILWHVGASKHGNDVVQWAKARAYAFQALSQYEVSHLEKGIL 777

Query: 775  DFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPR 834
            DFK+++ ++L+SET+  VL+AMEGFQVKIITHEH NRRR  KEKK  GSKIEKLLD+ P+
Sbjct: 778  DFKRKNTDLLLSETDNDVLKAMEGFQVKIITHEHMNRRRLAKEKKTTGSKIEKLLDVLPQ 837

Query: 835  VIFSSDKKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSR 894
            V+F S KK  A + PGAALLCLSFT   L   G  RG  ++ + YENAL++IA+S  LSR
Sbjct: 838  VLFPSGKKNNAGQSPGAALLCLSFTPNSL---GILRGPPDIHAAYENALVEIASSLHLSR 894

Query: 895  NIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPR 954
            NIFVALLS QSWK FM+RW+RA I+ +DAKA +   D+T KAAN ILK +MR+AEES+PR
Sbjct: 895  NIFVALLSFQSWKSFMRRWMRANILVLDAKAAAGTLDKTSKAANKILKGMMRLAEESIPR 954

Query: 955  SAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHL 1014
            SAENIALA+GALC VLP SAHTIKSTASKFLL+WLFQ EHEHRQWSAAIS+G ISS LH+
Sbjct: 955  SAENIALAVGALCLVLPPSAHTIKSTASKFLLNWLFQDEHEHRQWSAAISLGFISSCLHI 1014

Query: 1015 TDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWAAAADGTADGTNLDKET 1074
            TDHKQKFQNITGLL+VL SS+S LV+GACG+GLG SCQDLLT   A D      +L++ET
Sbjct: 1015 TDHKQKFQNITGLLKVLCSSKSTLVKGACGVGLGCSCQDLLTRVEAVDNI----DLERET 1070

Query: 1075 YKIEEMELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTSEF---SDDG 1131
            YKI+E+ELLG+ V+ L +M  QL+ +S  IL+GLS +FP  T D ++++TSE      D 
Sbjct: 1071 YKIQEVELLGKIVRTLLLMTSQLSQASDDILKGLSVYFPQGTDDSEISMTSELLLEKCDD 1130

Query: 1132 LEDDIWGVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSE 1191
            LE+DIWGVAG+VIGL +SI  +YR G HD +LK+KDLI+SWIPHV+SL  N     E  +
Sbjct: 1131 LEEDIWGVAGIVIGLGNSIGAMYRVGAHDSMLKVKDLIISWIPHVDSLAINSDFSNEGVD 1190

Query: 1192 IVLSVGSSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMAS 1251
             VLSVGS L LPIIVAFCR VE+MDD EL+ LV+ Y +LISEL+SV KSG FH+SLL AS
Sbjct: 1191 KVLSVGSCLVLPIIVAFCRRVEMMDDNELDRLVNVYIDLISELVSVKKSGTFHQSLLTAS 1250

Query: 1252 CVGAGSLLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAG 1311
            C+GAG+LLACI NE  H +  +++   L+LFRKCYSNPYP  +HLGGMLGVVNA+GA AG
Sbjct: 1251 CIGAGNLLACILNEAVHPIEFEHIKDLLDLFRKCYSNPYPAFVHLGGMLGVVNAMGASAG 1310

Query: 1312 YLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQY 1371
             L H    +SS++ GY QKE  Y LGPL S P CE H+T+L+QE+FLVAQ S D Q++Q 
Sbjct: 1311 ILFHGHRFSSSVKTGYEQKESSYILGPLLSSPNCESHLTTLIQEIFLVAQNSGDLQMKQN 1370

Query: 1372 AAWAMSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTD 1431
            A+WA+SFLR  LWSKEL   +NN++     SK VS  FS D++VMKL LWL+HLNYS   
Sbjct: 1371 ASWAVSFLRNLLWSKELPYVNNNVQTGGAESKMVSHNFSEDSLVMKLSLWLNHLNYSLGG 1430

Query: 1432 ATARVVTVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECI 1491
              A V TV+T+LRCL+ APRLPT+DWG+IIR CMR+EAQ+++ L  D A KR  LREEC+
Sbjct: 1431 KMAPVGTVATVLRCLSAAPRLPTMDWGSIIRRCMRFEAQVSESLTLDLALKRENLREECV 1490

Query: 1492 QFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDM 1551
            QF++AHA+Q  PLL+FLDELSDL RF+TLELNLQ+ LL HLA L K+FSGSRLEKLFDD+
Sbjct: 1491 QFAIAHAHQCDPLLTFLDELSDLSRFRTLELNLQSCLLAHLAGLTKIFSGSRLEKLFDDI 1550

Query: 1552 ADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPA 1611
            A++  S +S+QV+N DQKS LR+S W GL+ CL+EASL SLE++PN+E+CMEV+F LLPA
Sbjct: 1551 AEFFSSNSSHQVHNSDQKSTLRMSCWKGLYQCLDEASLSSLEYMPNVEKCMEVMFYLLPA 1610

Query: 1612 SQYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQA 1671
            S+  AI+G +  N V+EW   V+CL K RR+W+L+FLQV  +N ++GDVQL E++KK+ A
Sbjct: 1611 SESTAILGSDLVNPVKEWHEVVKCLAKVRRDWLLNFLQVPLLNLVEGDVQLDEILKKIVA 1670

Query: 1672 KAKLVRIGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEIS 1731
            KAKLVRIG  P TELG+LKA ILN KS G+W+VL+EVVAALQ+AE  ++RQWL+D +E+S
Sbjct: 1671 KAKLVRIGIIPFTELGRLKACILNSKSHGIWNVLVEVVAALQYAEGSIKRQWLLDAVEVS 1730

Query: 1732 CVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMS 1791
            CVS YPSTALQF+GLLSGSCC+YMP L LD  TVL+DLPVTL SLL +P WE VAE  +S
Sbjct: 1731 CVSSYPSTALQFLGLLSGSCCKYMPLLTLDRLTVLSDLPVTLTSLLMEPSWEVVAESVVS 1790

Query: 1792 YLWASTERIYNWVVTDVTSSQSSPSTQPIDESENDMAALLLHVMHRACISLKDYLPPEKQ 1851
            YL+ASTERIY W VT+      S S  P+DESEN++   +LH MH  C+SLK+YLP EKQ
Sbjct: 1791 YLYASTERIYGW-VTNTVFLDGSTSVPPVDESENNLVTFILHTMHHTCLSLKEYLPLEKQ 1849

Query: 1852 LRLSNMLVR 1860
            LRL++M+++
Sbjct: 1850 LRLASMVIQ 1858

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224060123\|ref\|XP_002300048.1\| predicted protein [Populus trichocarpa] gi\|222847306\|gb\|EEE84853.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356573333\|ref\|XP_003554816.1\| PREDICTED: uncharacterized protein LOC100775274 [Glycine max]	Back alignment and taxonomy information

>gi\|449446873\|ref\|XP_004141195.1\| PREDICTED: uncharacterized protein LOC101219246 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449521015\|ref\|XP_004167527.1\| PREDICTED: uncharacterized LOC101219246 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297815026\|ref\|XP_002875396.1\| hypothetical protein ARALYDRAFT_484555 [Arabidopsis lyrata subsp. lyrata] gi\|297321234\|gb\|EFH51655.1\| hypothetical protein ARALYDRAFT_484555 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|32250969\|gb\|AAP74222.1\| RST1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|42565251\|ref\|NP_189404.2\| protein resurrection1 [Arabidopsis thaliana] gi\|332643829\|gb\|AEE77350.1\| protein resurrection1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9294472\|dbj\|BAB02691.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359488811\|ref\|XP_002273220.2\| PREDICTED: uncharacterized protein LOC100245681 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1860
TAIR\|locus:2089114		1841	RST1 "RESURRECTION1" [Arabidop	0.986	0.996	0.512	0.0
UNIPROTKB\|E1C9A8		1800	LOC100858921 "Uncharacterized	0.132	0.136	0.275	3.1e-10
UNIPROTKB\|Q5VW36		1801	FOCAD "Focadhesin" [Homo sapie	0.106	0.110	0.255	1.1e-09
UNIPROTKB\|F1MQ56		1808	FOCAD "Uncharacterized protein	0.095	0.097	0.259	1.8e-09
MGI\|MGI:2676921		1798	Focad "focadhesin" [Mus muscul	0.125	0.130	0.25	3.5e-05
RGD\|1311849		1669	Focad "focadhesin" [Rattus nor	0.106	0.119	0.255	3.6e-05
DICTYBASE\|DDB_G0293192		2043	DG1098 "armadillo-like helical	0.056	0.051	0.313	0.00038

TAIR\|locus:2089114 RST1 "RESURRECTION1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4673 (1650.0 bits), Expect = 0., P = 0.
 Identities = 954/1860 (51%), Positives = 1257/1860 (67%)

Query:     1 MDSYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVV 60
             M SY+ LLEK RVPQPS+Q+FAV+S+FSKLR++P   G ++E GR+AI+ CL S S  VV
Sbjct:     1 MASYATLLEKTRVPQPSIQRFAVISVFSKLRSAPEQFGSEAEAGREAISFCLTSESITVV 60

Query:    61 DQTVREFCRLVADSKFDXXXXXXXXXXXXXXXDPKFVTLFVKALGYLVRLGFERFNGSWK 120
             DQ+V E CRLV+DS  D               D K V+LFVK LG+L+R+G+ER NG+WK
Sbjct:    61 DQSVHELCRLVSDSVLDLSRGLLELQSALEGCDSKLVSLFVKGLGFLIRIGYERNNGNWK 120

Query:   121 LGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFS 180
               +TENHPF++I SSR E  TEL+ QV LF+  N+ LGMV VCEFL PF NF+ILR+P S
Sbjct:   121 FNSTENHPFVRIQSSRVETQTELLHQVSLFVMHNRRLGMVGVCEFLEPFLNFTILRIPLS 180

Query:   181 DSLSSLFVRQLVSSVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLEFVLDCMVD 240
             DS SSLF R+L+SS+ASLCCS   +ALP+F +L  CL+Y+P        NLE ++  +VD
Sbjct:   181 DSSSSLFARELISSMASLCCSSRHEALPIFRLLMRCLKYIP------GNNLEVIVKILVD 234

Query:   241 SYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFE 300
             +Y VV+R LV  GL VTE  + G++L+  VL L  SP  Q+   E ++E LKH+L  Q +
Sbjct:   235 AYTVVVRDLVGTGLEVTEVHLLGVQLVDGVLFLCASPHVQTTEQESVIESLKHLLAVQKD 294

Query:   301 LRLQYKPELSSVILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEE 360
             L L Y  +LS V+L L  +L  S +EHEQLCILKFLLFL+ WK+E+E          S E
Sbjct:   295 LGLAYSHDLSLVVLSLVFMLAKSTVEHEQLCILKFLLFLLKWKTESENLSVKDAAGSSVE 354

Query:   361 LLLIFPILNLMSSPSKSVKGVASDXXXXXXXXXXXXXAAPKMEVAMNAGNPSIIGFGSII 420
              LL+FPI  LMSSPSKS+K  AS               APK+EV  + G+  +   GS++
Sbjct:   355 SLLLFPITALMSSPSKSIKVAASKVLSIVENFLVTVSNAPKIEVHTSKGDSPLSRVGSVV 414

Query:   421 FRLLKNLWFQDQNSTSRSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSL 480
             FR ++ LW Q+  + S S FL +  T     +E   GP  W S LRE      D KK   
Sbjct:   415 FRFMQQLWHQNDYTPSTSSFLRVAYTNGSEKQETYLGPVTWNSLLREHAERFWDKKK--- 471

Query:   481 PVSASQEALSTEMSMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYS 540
              +SAS   LS E+ +LLGA+A V+V+HPSLG+ A+ +   +G +D K+ VPLLLA+L++S
Sbjct:   472 -LSASF-CLSQEIPILLGAVAGVMVMHPSLGADAIGSLTIIGGIDSKMSVPLLLAVLYFS 529

Query:   541 NMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQ 600
             N+ +R +V CQ+ L KLLG+LPS+A+Q VMIPLVVQTI PML K+AK +LYATA RLLCQ
Sbjct:   530 NLLSRTNVPCQSLLSKLLGLLPSLAAQQVMIPLVVQTITPMLRKDAKGLLYATAIRLLCQ 589

Query:   601 TWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACI 660
             TW +NDRAF SLQ VL+P+  I++ SER+ICIS+AASIHDVC++ PDRGVDLILSV ACI
Sbjct:   590 TWVVNDRAFSSLQEVLRPQGFIEYISERHICISMAASIHDVCKRHPDRGVDLILSVQACI 649

Query:   661 ESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMD 720
             ES++  ++ALG QSL++LCEADVIDFYTAWDVI KH     LDP+LA S+C LL+WGAMD
Sbjct:   650 ESQNCPVRALGFQSLSHLCEADVIDFYTAWDVIKKHAQHIKLDPLLAYSVCHLLKWGAMD 709

Query:   721 AEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRS 780
             AEAY E +  VL ILW+ G++    H+ QW KAR SA  AL QYEVS ++    DF +  
Sbjct:   710 AEAYPEDAENVLNILWEIGSSMQKPHDSQWTKARVSAIVALGQYEVSFMENKFSDFNKNC 769

Query:   781 FEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSD 840
               +L SETN  +L A+E   +KI+ HEHS RRR+V+EKKVPGSKIEKLLD+ P+VIF + 
Sbjct:   770 TYLLFSETNAEILNALEDLSIKIMIHEHSVRRRYVREKKVPGSKIEKLLDVIPQVIFPAG 829

Query:   841 KKIYARELPGAALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVAL 900
             K+I   ELPGAALLCLS+  +D++  G +R   +V   YE A   +  S QLSRNI +AL
Sbjct:   830 KEIKTGELPGAALLCLSYNPRDVKF-GSSRSFHDVHFQYEEAFRVVVKSLQLSRNISLAL 888

Query:   901 LSLQSWKFFMQRWVRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPRSAENIA 960
             +SLQS K FM+RW+RA I+SIDA  + +  D+T KA N+I+K+L+ +AEE++PR AENIA
Sbjct:   889 ISLQSLKAFMRRWMRANILSIDATTKELSSDKTSKATNNIMKSLVHMAEEALPRCAENIA 948

Query:   961 LAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWXXXXXXXXXXXXXHLTDHKQK 1020
             LA+GALC+ LP ++H IK++ASKFLLSWL +HEHEHRQW             H+TDHKQK
Sbjct:   949 LALGALCAALPAASHNIKASASKFLLSWLLEHEHEHRQWTAGISLGLISSSLHVTDHKQK 1008

Query:  1021 FQNITGLLEVLSSSRSILVRGACGIGLGFSCQDLLTWXXXXXXXXXXXNLDKETYKIEEM 1080
             FQNI+GLLEVL SS+S LV+GACG+GLGFSCQDLLT            ++D ++Y+ +E 
Sbjct:  1009 FQNISGLLEVLCSSKSTLVKGACGVGLGFSCQDLLT----RTEASASSDIDSDSYRNQEE 1064

Query:  1081 ELLGRTVKALSMMIFQLAPSSSKILEGLSAHFPVKTCDVKMNVTS---EFSDDGLEDDIW 1137
              LLGR V+ LS ++     +   ILE LSA FP    D  + +     E SDD  +DD W
Sbjct:  1065 RLLGRIVRLLSSILHGFLHTPCDILESLSALFPPGEEDNVIGLPQLLDESSDD-FDDDTW 1123

Query:  1138 GVAGLVIGLASSISVIYRAGKHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVG 1197
             G+AGL+IGL  S+  IYRAGK D V+KIK+LIVSWIP+ +SL +  GS  + S  + SVG
Sbjct:  1124 GIAGLIIGLGMSVGAIYRAGKKDAVVKIKNLIVSWIPYADSLKQTSGSNSKVSVRLFSVG 1183

Query:  1198 SSLALPIIVAFCRGVELMDDKELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGS 1257
             S LALPI++ FC+ VEL D  E++ ++  +++LISELL V KSG   K LLMASC+GAG 
Sbjct:  1184 SCLALPIVITFCQKVELFDAHEVDDIIGCFKDLISELLIVRKSGALRKRLLMASCIGAGD 1243

Query:  1258 LLACIFNEGAHSLNVDYVNAFLELFRKCYSNPYPPIIHXXXXXXXXXXXXXXXXYLIHVD 1317
             LL  + NEG H + ++ V   LELF+KCYS  YPP+ H                 L++  
Sbjct:  1244 LLGSVLNEGIHPVKIESVKELLELFKKCYSGLYPPVAHFGGMLGVVNVLGAGAGNLVYSH 1303

Query:  1318 PLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMS 1377
             P   +  A   + E  Y  GPL S+    Q +T ++QE+FL+AQ + D QLQ YAAWA+S
Sbjct:  1304 PRPRAPPASSEENEISYVSGPLLSNAYFTQQLTPVVQEIFLIAQNTKDRQLQHYAAWAIS 1363

Query:  1378 FLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVV 1437
              LR ++ S E  +  N  ++D     S+S       +VMKL   L++ ++    +   + 
Sbjct:  1364 ILRTYMRSGESSSLSNENQSDDSDRNSISHNVPEHTMVMKLAQGLTNPSFPLAGSPLNIG 1423

Query:  1438 TVSTILRCLTRAPRLPTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAH 1497
             T+++ LRCL+ APRLP LDWGA IR  M+ E Q       D   K   LREEC +FSLAH
Sbjct:  1424 TMASALRCLSHAPRLPNLDWGATIRRLMKQETQTDVTQSGDVP-KEITLREECFKFSLAH 1482

Query:  1498 ANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFS 1557
             A++F  LL+FLDELS+L RFK LE +LQ+ LL HL  L+++FSGSR+ KLFDD++ ++ S
Sbjct:  1483 ASEFDELLAFLDELSELSRFKALEESLQSCLLCHLGGLMRIFSGSRMNKLFDDVSCFVVS 1542

Query:  1558 VTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAI 1617
             ++S Q Y+ DQKS LRVS W GL  CLEE SL+S E++  +E+C+E+LFA+LP +  +  
Sbjct:  1543 LSSDQTYSCDQKSSLRVSCWKGLSQCLEETSLESSEYVTKIEKCIELLFAVLPVASQSP- 1601

Query:  1618 IGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVR 1677
                +Q   V+EWS AV CL K+ R+W+  FLQV ++ P          +KK+QAKAKL +
Sbjct:  1602 -RADQMGSVKEWSEAVTCLQKSHRDWLYKFLQVSNLEPGNEKTNFQGDLKKIQAKAKLAK 1660

Query:  1678 IGSFPLTELGKLKAYILNFKSLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYP 1737
             +GS P +ELGKLKA ILN +   +WDVLIE+VAAL HAE G++RQWL+D +EISCVS +P
Sbjct:  1661 LGSVPFSELGKLKAIILNCEESDIWDVLIEIVAALHHAEGGIKRQWLIDAVEISCVSSHP 1720

Query:  1738 STALQFVGLLSGSCCRYMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWAST 1797
             STA+ FVGLLS  CC YMPFL LD STVL+D+ VT+ SLLS P +E V EPF+S+LW S 
Sbjct:  1721 STAIIFVGLLSSICCEYMPFLNLDRSTVLSDMSVTVTSLLSDPSYEVVTEPFISFLWTSL 1780

Query:  1798 ERIYNWVVTDVXXXXXXXXXXXIDESENDMAALLLHVMHRACISLKDYLPPEKQLRLSNM 1857
             ER+Y++  T+            I +SE D A +L+ VMH  C++ +D+LP EKQLRL++M
Sbjct:  1781 ERVYSFA-TE-SDANARLSSQQIAQSERDKAPMLVKVMHYICVAFRDHLPLEKQLRLASM 1838

GO:0009507 "chloroplast" evidence=ISM

GO:0006723 "cuticle hydrocarbon biosynthetic process" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0006486 "protein glycosylation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

UNIPROTKB\|E1C9A8 LOC100858921 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VW36 FOCAD "Focadhesin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MQ56 FOCAD "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2676921 Focad "focadhesin" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1311849 Focad "focadhesin" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0293192 DG1098 "armadillo-like helical domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1860
pfam12530		230	pfam12530, DUF3730, Protein of unknown function (D	7e-57
pfam12530		230	pfam12530, DUF3730, Protein of unknown function (D	3e-20

>gnl\|CDD\|221622 pfam12530, DUF3730, Protein of unknown function (DUF3730)	Back alignment and domain information

 Score =  196 bits (501), Expect = 7e-57
 Identities = 85/236 (36%), Positives = 125/236 (52%), Gaps = 13/236 (5%)

Query: 533 LLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVM--IPLVVQTILPMLHKNAKPVL 590
           LL  L Y+               KLL +LPS+A    M  IPLV+Q ++P++  +A  ++
Sbjct: 1   LLLELIYA----LGKSTDPRLQLKLLELLPSLAKHKNMRCIPLVLQALVPLVETDALELV 56

Query: 591 YATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD-RG 649
                RLL + W  NDR F  LQ +L        +    + I++AASI D+C+  PD  G
Sbjct: 57  QV-LLRLLTRLWAQNDRHFPFLQALLLFLSNSGSEERWEVLIALAASIRDICKLRPDQHG 115

Query: 650 VDLILSVAACI----ESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPM 705
           +DL+  ++ C+    +S D +IQAL L++L  LCEA+V+DF  AW V+ K  L     P+
Sbjct: 116 LDLLALLSGCLNHCTKSNDEVIQALSLEALRPLCEAEVVDFVKAWKVLLKK-LSLDQRPL 174

Query: 706 LAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEAL 761
           ++QSL  LL   A+D E Y E     L++LW+    +     LQ A+ R  A EAL
Sbjct: 175 VSQSLFSLLPQLAVDTEQYEELKLQALQLLWEIIAWSKDNTALQCARVRGLALEAL 230

This domain family is found in eukaryotes, and is typically between 220 and 262 amino acids in length. Length = 230

>gnl\|CDD\|221622 pfam12530, DUF3730, Protein of unknown function (DUF3730)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1860
PF11229		589	DUF3028: Protein of unknown function (DUF3028); In	100.0
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	100.0
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	98.85
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	94.67
PRK09687		280	putative lyase; Provisional	94.1
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.33
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	92.68
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	91.36
PTZ00429		746	beta-adaptin; Provisional	90.41
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	89.66
KOG0212		675	consensus Uncharacterized conserved protein [Funct	87.78
PRK09687		280	putative lyase; Provisional	86.03
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	86.0
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	84.97
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	83.56

>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function	Back alignment and domain information

Probab=100.00  E-value=3.3e-78  Score=705.61  Aligned_cols=489  Identities=20%  Similarity=0.318  Sum_probs=466.1

Q ss_pred             HHhHHHHHHHHhhccccchhhHHHHHHHhhccCchhHHHhhcccccc------chhhHH-HHH-HHHHhhhcCCCCchhh
Q 000205         1224 VHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSL------NVDYVN-AFL-ELFRKCYSNPYPPIIH 1295 (1860)
Q Consensus      1224 ~~~~~~l~~~l~~~~ksg~~~~~l~~a~cigag~~~~~il~~gvh~~------~~e~v~-~ll-~~~~~~yt~~~p~~~~ 1295 (1860)
                      ||++|.|+++  |+++|||       |++          |++.|||+      |+||+. +|| .|+|++.+++.|+|.|
T Consensus         1 mnklr~l~e~--~qqt~gf-------ala----------lg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~   61 (589)
T PF11229_consen    1 MNKLRALTEN--NQQTSGF-------ALA----------LGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQR   61 (589)
T ss_pred             CcHHHHHHHh--CCCCchH-------HHH----------HHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHH
Confidence            6899999999  9999999       888          99999999      999999 888 9999999999999999


Q ss_pred             hhhhhhHHHhhccccccccccCCCCccccccccccCCCccccccccCcccchhhHHHHHHHHHHHccCcchhhhhhHHHH
Q 000205         1296 LGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWA 1375 (1860)
Q Consensus      1296 lg~m~g~vna~ga~~g~l~~~~~~~~~~~~~~~~~ess~~~gpl~~~~~~~~~~~~~~qeifl~a~~s~~~~~q~~a~w~ 1375 (1860)
                      |++..|+|..+|+ +|+++|++         +|.+++|+++|.|      ++++|++.|-|    ..|+++++|.||+|+
T Consensus        62 laa~~GlvaLvgs-e~~~iQlk---------se~~~ss~~q~~l------nevir~ltqvi----s~sg~iglQsn~~wl  121 (589)
T PF11229_consen   62 LAALNGLVALVGS-EGDLIQLK---------SEAIQSSQFQSRL------NEVIRTLTQVI----SFSGVIGLQSNAAWL  121 (589)
T ss_pred             HHHhhchhheecc-ccceeeeh---------hhcccCHHHHHHH------HHHHHHHHHHH----cCccccccccchHHH
Confidence            9999999999999 99999999         9999999999999      99999999999    999999999999999


Q ss_pred             HHHHHHhhhhccccCcCCcccccccCCCccccccCchhHHHHHHHHhhccCCCCCCccccchhHHHHHhhc---ccCCCC
Q 000205         1376 MSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCL---TRAPRL 1452 (1860)
Q Consensus      1376 ~~~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~~wl~~~~~~~~~~~~~~~~v~tvlrcl---~~aprl 1452 (1860)
                      +||||.+.+|.+|+|.++|        .| ++|+||.|++++..+|+++.|++|| +.||.+.|++||++|   +++.+|
T Consensus       122 LGhLhls~~ss~~srtsvP--------~d-~sYLpE~S~iRaai~f~i~~GkkGp-e~vpp~lvkvvl~~ia~vgeS~qy  191 (589)
T PF11229_consen  122 LGHLHLSTLSSSQSRTSVP--------TD-FSYLPESSFIRAAIDFLIEAGKKGP-ESVPPSLVKVVLKPIATVGESYQY  191 (589)
T ss_pred             HHHHHHhhcccccCCCCCC--------Cc-cccCcchhHHHHHHHHHHHccccCC-ccCCHHHHHHHHHHhhhcCCCCCC
Confidence            9999999999999999999        66 9999999999999999999999999 899999999999999   889999


Q ss_pred             CCCChHHHHHHhhhhhhhhccCCCCCCccchhhHHHHHHHHHHhhhcccCchhhhhhhccCccccchhhhhhHHHHHHhH
Q 000205         1453 PTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHL 1532 (1860)
Q Consensus      1453 p~~dwg~iirr~m~~e~~~~~~~~~~~~~~~~~lre~c~~f~~aha~~~~pll~fld~l~~~~r~~~le~n~q~~ll~~l 1532 (1860)
                      ||+||++++.++||+|+             +++++.+|++||++||+.-.....||..=---|.|.+|+.|.+.+|+.++
T Consensus       192 PPVNWaalLsPLMRlnf-------------GeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~tk~~L~~Sl  258 (589)
T PF11229_consen  192 PPVNWAALLSPLMRLNF-------------GEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNTKKYLFESL  258 (589)
T ss_pred             CCccHHHHhhHHHhccc-------------cHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHHHHHHHHHH
Confidence            99999999999999999             89999999999999999665566666665555666699999999999999


Q ss_pred             HHHHHHhchhhHHHHHHHHhhhhhhcccccccCCCCCcchHHHHHhhHHHhhhhccccccCCcchHHHHHHHHHhhcccc
Q 000205         1533 ADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPAS 1612 (1860)
Q Consensus      1533 ~~l~k~fs~srl~kl~~d~~~~~~s~~~~~~~~~~q~~~lr~s~w~gl~~~l~e~~~~~~~~~~~i~~c~e~l~~llp~~ 1612 (1860)
                      +.|||+.++++|+.|.+.++     +..|++.|+.+++.+|.+...||.|+|+.+++. ++.|+.+++|+|++|++||++
T Consensus       259 ~~wmkhVsedqiQ~Fve~l~-----vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~-~h~Ws~Lc~ttekIF~lLPn~  332 (589)
T PF11229_consen  259 SLWMKHVSEDQIQAFVENLM-----VQQFKAASRPSNPELCQSALQGLSQAMKLPSPA-QHCWSLLCETTEKIFDLLPNK  332 (589)
T ss_pred             HHHHhhCCHHHHHHHHHHHH-----HHHHhhcCCCCChHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999     999999999999999999999999999999999 999999999999999999999


Q ss_pred             chhhhhccCccchHHHHHHHHHHhhhhchHHHHHHhhhhccCCCCCCchhHHHHHHHHhhhhhhhcCccccccchhhhHH
Q 000205         1613 QYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAY 1692 (1860)
Q Consensus      1613 ~~~~~~~~~~~~~~~ews~a~~cl~~~~~~wl~~~lqv~~~~~~~~~~~~~~v~kk~~~~~~l~~~g~~~~~el~~~k~~ 1692 (1860)
                              ++++.+|.|....|||.+|+++.+.++-||++         .| ++|.+|+|+|||++|++|+..|.++.+.
T Consensus       333 --------i~~~eveLYi~vAkCLSEMtd~eidrItqitK---------~n-ieKa~FVr~yLVSQGR~PL~~LnDvL~~  394 (589)
T PF11229_consen  333 --------IQRNEVELYIGVAKCLSEMTDTEIDRITQITK---------DN-IEKAIFVRLYLVSQGRLPLMGLNDVLST  394 (589)
T ss_pred             --------ccHHHHHHHHHHHHHHhhcCHHHHHHHHHhhh---------cc-chhhhhhhheehhcccccHhHHHHHHHH
Confidence                    99999999999999999999999999999988         44 8899999999999999999999999999


Q ss_pred             hhcccccch--hHHHHHH--HHHhhccccch-hh-HHhHhhhcceeeccccchhHH---------HHHH-----------
Q 000205         1693 ILNFKSLGV--WDVLIEV--VAALQHAEEGV-RR-QWLVDTIEISCVSCYPSTALQ---------FVGL----------- 1746 (1860)
Q Consensus      1693 il~~~~~~~--w~vl~e~--~~al~~a~~~~-kr-qwlld~~~i~cv~~~pst~l~---------f~~l----------- 1746 (1860)
                      +.++.++++  ||+|+.+  +++++|+++|| || |||+|.|+.++..+|.||..|         |+.+           
T Consensus       395 a~~~~eket~~WmlL~sfyqarivSh~nTGV~KRmEWLLELMGyIRnvAy~Stsvqnv~~~ealDFLl~VFA~aVVaWad  474 (589)
T PF11229_consen  395 AMQHHEKETVAWMLLHSFYQARIVSHSNTGVLKRMEWLLELMGYIRNVAYQSTSVQNVDLKEALDFLLQVFAAAVVAWAD  474 (589)
T ss_pred             HHhcchHHHHHHHHHHHHHHheeecccccchHHHHHHHHHHHHHHHHHHccCccccccCHHHHHHHHHHHHHHHhhhhcc
Confidence            999988887  9999999  99999999999 99 999999999999999999866         5554           


Q ss_pred             --------hhhcccC----------------CCcccccccccccccCccchhhhccCCChhhhhhhHHHHHHHHHh
Q 000205         1747 --------LSGSCCR----------------YMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTE 1798 (1860)
Q Consensus      1747 --------ls~scc~----------------y~p~~~~~~~~vl~dlpvtl~sll~~~~w~~~~~~~~~~l~~~~e 1798 (1860)
                              +|++|.+                ..|+.++..++.|+.||.+|+.||++++|+++|++||||||++||
T Consensus       475 h~~plllg~sa~w~pw~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~lp~s~~~ll~kepwk~qt~kfidwl~si~e  550 (589)
T PF11229_consen  475 HAAPLLLGLSASWLPWHQENGPAGPASSFLGRSPMHRVTLQECLTLLPSSMLLLLQKEPWKEQTQKFIDWLFSIME  550 (589)
T ss_pred             CCchhhhccccccCCCccccCCCCCchhhhcCCcchhhHHHHHHHhCchhHHHHhccCchHHHHHHHHHHHHHHHh
Confidence                    6888766                577888999999999999999999999999999999999999999

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1860
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 74.1 bits (181), Expect = 4e-13
 Identities = 106/647 (16%), Positives = 203/647 (31%), Gaps = 184/647 (28%)

Query: 232 EFV--LDC--MVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHI 287
            FV   DC  + D    +L     + +++++  +SG   L   L       KQ   V+  
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-----KQEEMVQKF 82

Query: 288 VEVLKHVLVAQFEL---RLQYKPELSSVILYLFSILID------SELEHEQLCILKFLLF 338
           VE    VL   ++     ++ +    S++  ++    D             +  L+  L 
Sbjct: 83  VE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 339 LINW----KSENE---YGFGGA--TCDLSEELLLIFPILNLMSSP----SKSVKGVASDL 385
           L       +        G  G+  T  ++ ++ L + +   M       +         +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 386 LVLLEKLLVKLLAAPKMEVAMNAGNPSIIGFGSIIFRL---------------LKNLW-- 428
           L +L+KLL ++   P      +  +   +   SI   L               L N+   
Sbjct: 199 LEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 429 -----FQDQNS----TSR----SFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDS 475
                F + +     T+R    + FLS  +T +  ++       P   +++ LLL  +D 
Sbjct: 257 KAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDC 313

Query: 476 KKSSLPVSASQEALSTEMSMLLGAIASVLVIHPS----LGSSAVDAFATVGKMDPKLGVP 531
           +   LP    +E L+T     L  IA  +    +          D   T+ +    +  P
Sbjct: 314 RPQDLP----REVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 532 LLLAILFYS-NMFTRKDVVCQNKLP-KLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPV 589
                +F   ++F          +P  LL ++        +I   V  ++  LHK     
Sbjct: 369 AEYRKMFDRLSVF-PPSA----HIPTILLSLI-----WFDVIKSDVMVVVNKLHK----- 413

Query: 590 LYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRG 649
                   L +       +  S+     P + ++ K +    +    ++H   R      
Sbjct: 414 ------YSLVEKQ--PKESTISI-----PSIYLELKVK----LENEYALH---RS----- 448

Query: 650 VDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHML------DYSLD 703
                     ++  + I +      L        +D Y     I  H+         +L 
Sbjct: 449 ---------IVDHYN-IPKTFDSDDLI----PPYLDQYFYS-HIGHHLKNIEHPERMTLF 493

Query: 704 PMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQ 763
            M+        R+  ++            KI  D+           W  A  S    L Q
Sbjct: 494 RMVFLD----FRF--LEQ-----------KIRHDS---------TAW-NASGSILNTLQQ 526

Query: 764 ---YEVSHIDKN----------ILDFKQRSFEILI-SETNPVVLRAM 796
              Y+  +I  N          ILDF  +  E LI S+   ++  A+
Sbjct: 527 LKFYK-PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1860
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.51
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.38
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	96.89
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.86
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.52
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.44
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.38
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.28
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.04
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.95
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	95.94
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	95.93
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	95.75
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	95.7
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	95.69
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	95.59
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	95.54
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	95.43
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	95.22
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.04
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	95.04
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	95.03
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	94.83
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.72
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	94.61
1qgr_A		876	Protein (importin beta subunit); transport recepto	94.39
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	93.85
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	93.11
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	92.47
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	91.92
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	91.41
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	91.26
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	91.16
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.67
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	89.94
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	89.72
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	88.95
1qgr_A		876	Protein (importin beta subunit); transport recepto	88.02
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	87.81
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	87.46
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	87.39
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	87.34
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	87.06
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	86.43
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	86.26
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	84.18
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	83.19

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

Probab=97.51  E-value=0.45  Score=60.65  Aligned_cols=428  Identities=12%  Similarity=0.052  Sum_probs=212.5

Q ss_pred             CcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccch-----hhHHhhhcCcCCCCc
Q 000205          550 CQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAF-----GSLQGVLQPKLLIDF  624 (1860)
Q Consensus       550 ~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRaf-----P~LQ~lL~~s~~~~~  624 (1860)
                      |+..+..--+.|-.+..++...+....++. .+ ++.++..|-.|.-++-...+++.+..     ..+...+... ..  
T Consensus        26 d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~-~~-~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~-l~--  100 (852)
T 4fdd_A           26 DTTIQRTVQQKLEQLNQYPDFNNYLIFVLT-KL-KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN-IG--  100 (852)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHHHH-TC-TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT-TT--
T ss_pred             CHHHHHHHHHHHHHHHhCCCHHHHHHHHHh-cc-CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH-Hc--
Confidence            334444444444444444433333344433 11 12344555555544444433322222     2233333221 11  


Q ss_pred             cchhhHHHHHHHHHHHHhhcCC-CcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHH-----HHHHHHHhhc
Q 000205          625 KSERNICISIAASIHDVCRKDP-DRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYT-----AWDVIAKHML  698 (1860)
Q Consensus       625 ~~ewEv~IArAasIRDICk~rP-dhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~S-----AWkVLa~KL~  698 (1860)
                      +....++-..|.++..|.+.++ ++=-|+++.+-+++.+.++...-.|+.++..+|+.-.-.+.+     .++.+-+.+-
T Consensus       101 ~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~  180 (852)
T 4fdd_A          101 DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL  180 (852)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH
Confidence            2234677888999999999875 467789999999999988989999999999999864322211     1455555544


Q ss_pred             CC--CCCHHHHHHHHHHhcc-cCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCccccccccc-C
Q 000205          699 DY--SLDPMLAQSLCILLRW-GAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNI-L  774 (1860)
Q Consensus       699 ~~--~~rPlVlkSLCeLfp~-gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~i-P  774 (1860)
                      ..  +.+|.|..+-+.-+.. .......+.....+++..|+....+++    +   +||.+|+++|+..-- .-|+.+ |
T Consensus       181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~----~---~vr~~a~~~L~~l~~-~~~~~~~~  252 (852)
T 4fdd_A          181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE----P---EVRKNVCRALVMLLE-VRMDRLLP  252 (852)
T ss_dssp             TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC----H---HHHHHHHHHHHHHHH-HCHHHHGG
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC----H---HHHHHHHHHHHHHHH-hCHHHHHH
Confidence            32  5577777666666532 122234444556688889988765433    2   568889888875431 111111 1


Q ss_pred             Cccc--chHHHHHhccChHHHHHHHHHHHHHHHHHHhhcccccccccCCCcchhhhhhcchhhhhhc-cccccccCCCce
Q 000205          775 DFKQ--RSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSS-DKKIYARELPGA  851 (1860)
Q Consensus       775 d~~g--s~y~qLLsetn~sVL~A~eeLLtslIk~E~~~~rR~vy~ktvagsk~~Kll~~IP~~LlK~-ye~nKqp~~PGa  851 (1860)
                      .+.+  ....++++..+.++....-+|+..+.+.++.  +..     + ..-..+   .+|..+-++ |.+.. .     
T Consensus       253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~-----~-~~~~~~---l~p~ll~~l~~~e~d-~-----  315 (852)
T 4fdd_A          253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDV-----L-VRHLPK---LIPVLVNGMKYSDID-I-----  315 (852)
T ss_dssp             GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHH-----H-TTTHHH---HHHHHHHHTSCCHHH-H-----
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHH-----H-HHHHHH---HHHHHHHHcCCcHhH-H-----
Confidence            0000  0123345556677888878887776654311  000     0 000111   133322211 10000 0     


Q ss_pred             eeeccccCcccccccccccchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcccccCCch
Q 000205          852 ALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPD  931 (1860)
Q Consensus       852 lLLcy~~~p~~~~~~g~sk~l~~~~~aY~q~L~~li~ev~iSrdw~~aLll~qSW~~FM~Rw~~Avv~~r~gKe~~e~~~  931 (1860)
                      .++--++ ..|.+.++ .-.-.+..++--+.|..+++..                                +       +
T Consensus       316 ~~~~~d~-~ed~~~dd-~~~~~~vr~~a~~~L~~la~~~--------------------------------~-------~  354 (852)
T 4fdd_A          316 ILLKGDV-EGGSGGDD-TISDWNLRKCSAAALDVLANVY--------------------------------R-------D  354 (852)
T ss_dssp             HHHHC--------------CCCCHHHHHHHHHHHHHHHH--------------------------------G-------G
T ss_pred             HHhcCCc-cccccccc-ccccchHHHHHHHHHHHHHHhc--------------------------------c-------H
Confidence            0000000 00000000 0000000111111111111111                                0       0


Q ss_pred             hhhhhHHHHHHHHHHHhhccCccchhhHHHHHHhhhhhccCccchhhhhhHHHHHHhhhhccccccchhHHHHhhhhhcc
Q 000205          932 RTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSS 1011 (1860)
Q Consensus       932 K~~~Aa~Dil~~~ik~a~~ssP~v~gNsiLAL~gLa~~v~~~~h~v~ssas~fLl~wL~q~eh~h~qwsAaisLGll~~s 1011 (1860)
                      .   ....++..+......+.|.++.-++.|+|.++-..+.............|++-+.. ++.+=++.|+-.+|-++..
T Consensus       355 ~---~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          355 E---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             G---GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHH
T ss_pred             H---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence            0   11122222233333457899999999999997655431111225556666666643 4444456677788877765


Q ss_pred             ccccch-hHHHHHHHHHHHHHhcccccceechhhhhhHHhhhh
Q 000205         1012 LHLTDH-KQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQD 1053 (1860)
Q Consensus      1012 lh~tD~-k~k~~~Is~Ll~vls~s~S~~Vkgacgl~LG~~c~~ 1053 (1860)
                      +.+.+. +...+.+..+++.+.+ ++..|+.++..+||.+|..
T Consensus       431 ~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          431 VVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence            533222 2233555666666544 4568888888898888753

PyMOL of 4fdd

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1860
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-07
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.001
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.001

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1860
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.75
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.28
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.65
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	93.72
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	93.07
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	92.13
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.68
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	90.02
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	89.98
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	88.03
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	82.45
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	82.42
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	80.28

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.11  Score=59.33  Aligned_cols=268  Identities=10%  Similarity=0.007  Sum_probs=145.6

Q ss_pred             chHHHHHHHHHccC-CCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccC---cccHHHHHHHHHHhhhcCCC
Q 000205          512 SSAVDAFATVGKMD-PKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQ---SVMIPLVVQTILPMLHKNAK  587 (1860)
Q Consensus       512 ~~al~~L~~L~k~d-P~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~h---k~~iP~VLrtL~pmLsk~s~  587 (1860)
                      ..+++.+..+++.- |......|+|.+.-.+    ..  +.++...+.+.|+.+...   ...+..++..+..+++ +.+
T Consensus        28 ~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~----~~--~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-~~~  100 (588)
T d1b3ua_          28 LNSIKKLSTIALALGVERTRSELLPFLTDTI----YD--EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLAT-VEE  100 (588)
T ss_dssp             HHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC----CC--CHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTT-SSC
T ss_pred             HHHHHHHHHHHHHhCcHhhHHHHHHHHHHHh----cC--cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcc-CCC
Confidence            34666666665432 2221245677655544    22  335677888888877542   2233444555543443 345


Q ss_pred             CchhHHHHHHHHHHHhhcc------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC-cchhhHHHHHHhh
Q 000205          588 PVLYATATRLLCQTWEIND------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD-RGVDLILSVAACI  660 (1860)
Q Consensus       588 ~~LrA~ALRLLtkLWkkqd------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd-hG~DLL~~IS~Cl  660 (1860)
                      +..|.-|.+.+.++....+      -..|.+.++....       ....+.+.+..+..+...-++ .-.++++.+.+..
T Consensus       101 ~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~-------~~~~r~~a~~ll~~~~~~~~~~~~~~l~~~~~~l~  173 (588)
T d1b3ua_         101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD-------WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLC  173 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS-------SHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            6678888888888876542      2345555544431       122333333444555443333 4455666666666


Q ss_pred             ccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcC--CCCCHHHHHHHHHHhccc--CCChHHhHHHHHHHHHHHH
Q 000205          661 ESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLD--YSLDPMLAQSLCILLRWG--AMDAEAYSEASRTVLKILW  736 (1860)
Q Consensus       661 ks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~--~~~rPlVlkSLCeLfp~g--avdaeeYee~~~~VI~~LW  736 (1860)
                      +++++.+.-.+.+++..+++.--  --..|..+-+.+..  .+..+.|.....+-+...  ..+.+.   ....++..+.
T Consensus       174 ~D~~~~VR~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~---~~~~i~~~l~  248 (588)
T d1b3ua_         174 SDDTPMVRRAAASKLGEFAKVLE--LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED---LEALVMPTLR  248 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSC--HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH---HHHHTHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH---HHHHHHHHHH
Confidence            67788888888899999887432  22334444443321  166777654444444211  122222   3344666677


Q ss_pred             HhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCcccchHHHHHhccChHHHHHHHHHHHHHHH
Q 000205          737 DTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIIT  805 (1860)
Q Consensus       737 ~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLLtslIk  805 (1860)
                      ++..++      -| +||.+|.++|+.+--..-++..++.--..+..++...++++..+....+..+++
T Consensus       249 ~~~~D~------~~-~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         249 QAAEDK------SW-RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HHHTCS------SH-HHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             Hhcccc------cH-HHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            665432      25 789999999887641111111000001246667777777777776666655554

PyMOL of d1b3ua_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure