Citrus Sinensis ID: 000208

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------186

MTSTETSSVGSLVSSLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYSSYTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGENQGHSGVSDMRSQGKNSTARGMTKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAAYEALASALKALVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF

ccccccccHHHHHHHHHHHccccccccccccHHEEEcccccccHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEcccccHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEcccEEEEcHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHcccEEEEccccccccHHHHHHcccccccEEEEEEccccHHHHHHHHHHcccEEEEEEccccccccccccccccEEEEEccccccccHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHccc

cccHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHcccccHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEEHEEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHcccccEEcHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccHccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHccHHcccccccHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHccccHccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEcccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccHHHcccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHEEcccccccccccccHHHccccHHHHHHcccccccHHccHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHcccEEEEccHHHcccccHEEEEEcHcccccccEccHHHHHHHHHHHHHcccEEEEEEEccccccHHcccccccEEEEEccccccccHHHHHHHcEEEEEccccEEEEHHHHHHHHHHHHHHHHHccc

mtstetssVGSLVSSLVSsfklvppaaippmldciltstgssasAIFFSLLDLSKDAIKegqkldsdqcNYIASMVGALCHLLKTLGAGYIFiaganhdafqSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWInlektlvpcifssvgfslgvlqneesdaiewgscspfqgskgetnasdmdKECMLSLsrsitlptscHILTLVMDSALRnlqaapstdsllengCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLfslgtlerrdAFTVLSLYLSYSsytegsensdrsdrgeefDIRAVREFWEEIKRGlvdeeglvrKQSLHILKAVLQIrgenqghsgvsdmrsqgknstargmtkRDLWAVKEAKslgvgklcystDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFslphdnlpgstgrahqnwikpsgeIFDWLSVLWERgfchgnpqVRYMIMQSFLGIEWKSyencaksvpesfllgpfmeglndpvhhkdfgtkgvyssRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIEnkaeccgdafpekvpeecspenfpcndksdLLDFLRFVIESskqhfnpnyrlrgysfwqfKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSgcskqqsanncKSRMLVLKSLndfpisftshpslsnafvtcddedldsWESKAKRWARVFFLVIKDEQDLAPVLKFIqngginickqsnhvrCISMKFLILTLNFLQEIQIMQERYSecgirirtkseidslktvdqfsyaEASIFHEKLANLFPNVLEELVCfsnlscsifwsniameetnlpssvigklggpsqrrlsfSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKtiqsptsdsesgAEVCLAAYEALASALKALVgpqalcffkknDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLlslpycglengancsyffsDDVVRYIFNDLVESLenagegsllpmLRSVRLTLDLfasgssgslvsscrgvdtQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYsvfseeemhmmentpgpLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLygsvafdeDFEAELAEnydaktevsllakspvpeltEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSrfvdndivGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPIlrdydmrpqaLSSYVFIAANVILHASKAVqfrhledllppivplltshhhslrgFTQLLVYQVLCKLfptldfgtsqkmpleksCFEDLKSylaknsdctrLRASMsgyldaydpnlsitpavifvnrdkelefecvptSLMEQVLNFLNDVREDLRYSMAKDVVTIKNeslkigedpdcaetlsdldkeesfsqlpkdslLDFQkkitlpkhenqdnssssffgNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAiadanilhdkQFQLISVTaekwvpivevpvNSIKHFLerkkhegfsvlgleqtansipldqymfpkkTVLVlgrekegipVDIIHMLDACieipqlgvvrsLNVHVSGAIALWEYTRQQRF

mtstetssvgsLVSSLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLfslgtlerrdAFTVLSLYLSYSsytegsensdrsdrgeeFDIRAVREFWEEIKRglvdeeglvrkQSLHILKAVLQIrgenqghsgvsdmrsqgknstargmtkrdlWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESskqhfnpnyRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSgcskqqsannCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERysecgirirtkseidslktVDQFSYAEASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAAYEALASALKALVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALhltglwltnPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKysaihrrkvRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTikneslkigedpDCAETLSDLDKEESFSQLPKDSLLDFQKKITlpkhenqdnssssffGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQtansipldqymFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALweytrqqrf

MtstetssvgslvsslvssFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFTVlslylsyssyTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGENQGHSGVSDMRSQGKNSTARGMTKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVClaayealasalkalVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINallaagvlararraillNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFAsgssgslvssCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLYGSVafdedfeaelaeNYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDAldsgklfllglldfVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF

**************SLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGS*******************CMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYSSY***************FDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIR***************************DLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKV*******NFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGG**QRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQ*********AEVCLAAYEALASALKALVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNE*************************************************************QLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYT*****

**************SLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIK****LDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDS******************CYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYSSYTEGSEN****DRGEEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGEN*******************GMTKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFG******SRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQ*********MLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRI*TKS*I***KT********ASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAAYEALASALKALVGPQALCFFKKND*********KPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNESLKIG********************LPKDSLLDFQKKITL*****************EAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF

**************SLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYS***************EEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGENQ********************TKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQ**********EVCLAAYEALASALKALVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF

************VSSLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYSSYTEGS*NSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIR************************TKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAAYEALASALKALVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNESLKIG*****************FSQLPKDSLLDFQKKITLPKH*****SSSS*FGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1857	2.2.26 [Sep-21-2011]
Q13395		1621	Probable methyltransferas	yes	no	0.083	0.095	0.543	3e-46
Q07527		1436	tRNA (guanosine(18)-2'-O)	yes	no	0.089	0.115	0.384	7e-33
O67577		211	tRNA (guanosine(18)-2'-O)	yes	no	0.088	0.781	0.297	3e-10
P0AGJ5		345	Uncharacterized tRNA/rRNA	N/A	no	0.072	0.388	0.302	1e-06
P0AGJ6		345	Uncharacterized tRNA/rRNA	N/A	no	0.072	0.388	0.302	1e-06
P0AGJ4		229	tRNA (guanosine(18)-2'-O)	no	no	0.043	0.349	0.325	4e-06
P0AGJ2		229	tRNA (guanosine(18)-2'-O)	N/A	no	0.043	0.349	0.325	4e-06
P0AGJ3		229	tRNA (guanosine(18)-2'-O)	N/A	no	0.043	0.349	0.325	4e-06
P74328		384	Uncharacterized tRNA/rRNA	N/A	no	0.075	0.367	0.298	4e-06
O51468		228	Uncharacterized tRNA/rRNA	yes	no	0.092	0.75	0.280	5e-05

>sp\|Q13395\|TARB1_HUMAN Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1	Back alignment and function desciption

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 121/160 (75%), Gaps = 5/160 (3%)

Query: 1701 RASR-----QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTA 1755
            RA+R      + ++VASLID+  NL GL RTCEVF AS L +     + DKQFQ +SV+A
Sbjct: 1453 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSA 1512

Query: 1756 EKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGI 1815
            E+W+P+VEV    +  +L++KK EG++++G+EQTA S+ L QY FP+K++L+LG E+EGI
Sbjct: 1513 EQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGI 1572

Query: 1816 PVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
            P ++I  LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1573 PANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1612

Probable S-adenosyl-L-methionine-dependent methyltransferase which methylates RNA molecules such as tRNAs. In case of infection by HIV-1, it binds to the loop region of TAR RNA, a region also bound by RNA polymerase II. Binding of TARBP1 and RNA polymerase II to HIV-1 TAR RNA is mutually exclusive, suggesting that TARBP1 may function alone or in conjunction with HIV-1 Tat to disengage RNA polymerase II from HIV-1 TAR RNA. May act by methylating HIV-1 TAR RNA.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp\|Q07527\|TRM3_YEAST tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM3 PE=1 SV=1	Back alignment and function description

>sp\|O67577\|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus (strain VF5) GN=trmH PE=1 SV=1	Back alignment and function description

>sp\|P0AGJ5\|YFIF_ECOLI Uncharacterized tRNA/rRNA methyltransferase YfiF OS=Escherichia coli (strain K12) GN=yfiF PE=3 SV=1	Back alignment and function description

>sp\|P0AGJ6\|YFIF_ECO57 Uncharacterized tRNA/rRNA methyltransferase YfiF OS=Escherichia coli O157:H7 GN=yfiF PE=3 SV=1	Back alignment and function description

>sp\|P0AGJ4\|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri GN=trmH PE=3 SV=1	Back alignment and function description

>sp\|P0AGJ2\|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmH PE=1 SV=1	Back alignment and function description

>sp\|P0AGJ3\|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli O157:H7 GN=trmH PE=3 SV=1	Back alignment and function description

>sp\|P74328\|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0955 PE=3 SV=1	Back alignment and function description

>sp\|O51468\|Y516_BORBU Uncharacterized tRNA/rRNA methyltransferase BB_0516 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0516 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1857
449459058		1833	PREDICTED: uncharacterized protein LOC10	0.974	0.987	0.592	0.0
449510499		1833	PREDICTED: uncharacterized LOC101213211	0.974	0.987	0.591	0.0
15236590		1850	tRNA/rRNA methyltransferase (SpoU) famil	0.975	0.978	0.571	0.0
297800328		1852	tRNA/rRNA methyltransferase family prote	0.969	0.971	0.563	0.0
255566751		1744	RNA binding protein, putative [Ricinus c	0.791	0.842	0.676	0.0
224138732		1224	predicted protein [Populus trichocarpa]	0.651	0.987	0.701	0.0
297745670		1203	unnamed protein product [Vitis vinifera]	0.607	0.938	0.700	0.0
2245119		1493	TRP-185 like protein [Arabidopsis thalia	0.709	0.882	0.573	0.0
242037305		1767	hypothetical protein SORBIDRAFT_01g05066	0.917	0.963	0.426	0.0
359495741		920	PREDICTED: uncharacterized protein LOC10	0.456	0.920	0.671	0.0

>gi\|449459058\|ref\|XP_004147263.1\| PREDICTED: uncharacterized protein LOC101213211 [Cucumis sativus]	Back alignment and taxonomy information

 Score = 2143 bits (5553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1108/1870 (59%), Positives = 1360/1870 (72%), Gaps = 60/1870 (3%)

Query: 9    VGSLVSSLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAI-----KEGQK 63
            + S+ SSL  SF+ VPP A+P +LDC+  STG S+S +F SLL+     I     KEG K
Sbjct: 1    MASVFSSLSESFRRVPPMAVPAILDCLFASTGLSSSELFDSLLETFPKTIDDATTKEG-K 59

Query: 64   LDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEV 123
            LD+DQCNYI S+V ALCH+LK          GA+  A +SF+WKSF+PL+        E+
Sbjct: 60   LDADQCNYITSLVCALCHILKK--------DGADPTALKSFIWKSFVPLINKTATLNREM 111

Query: 124  LNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSK 183
            LNQ+SESF DVVT+TN+W  +E TL+P   SS  +S  VLQ+ E D  E    S   GS 
Sbjct: 112  LNQVSESFIDVVTETNSWPIVEATLIPFCISSALYSTSVLQHVELDTFEVDRRSFILGSN 171

Query: 184  GETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCY-AEKF 242
               +   MD + M      + LP +CH+L +++D+ L N Q   ++D ++ NG   AE+F
Sbjct: 172  VPVHEPRMDNQTMKDYG-FLQLPLACHVLAIMLDAVLCNRQVPQTSDKVVSNGYQKAEEF 230

Query: 243  AANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCF 302
               L+W +CN++E++LLQS +HRSCAI  LLP+I +A +S  S EIS  GH   LSR CF
Sbjct: 231  TVKLIWDICNLSEQMLLQSSDHRSCAICHLLPVIFEALISHHSLEISIQGHACNLSRSCF 290

Query: 303  FKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYSSYTEGSENSDRSDRGEEFDIRAVREFW 362
              KIWKCC+ LFS GTLERRDA+ +LSLY  +  + E    +   D GEEFDI+A + FW
Sbjct: 291  LMKIWKCCKKLFSFGTLERRDAYRILSLYFCFFPHNEELGGAGMCDDGEEFDIKADKIFW 350

Query: 363  EEIKRGLVDEEGLVRKQSLHILKAVLQIRGENQGHSGVSDMRSQGKNSTARGMTKRDLWA 422
            +EIKRGLVD+E  VRKQSLHILK  L   G     + VS   S GK+S  +G+TKR+ WA
Sbjct: 351  DEIKRGLVDKESSVRKQSLHILKKALSKNGRGSP-TTVSKTISSGKDSNVQGITKRERWA 409

Query: 423  VKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFS 482
             KEAKSLGVG++C    +A    QQ+WEAFILLYEMLEEY +HLVEAAW+HQI+LLLQ  
Sbjct: 410  NKEAKSLGVGQICSQNKIATNSRQQKWEAFILLYEMLEEYGSHLVEAAWSHQISLLLQHP 469

Query: 483  LPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYE 542
               +    S+G  HQN I+ SGEI+ WLS+LW RGF H NP VR +IMQ FL IEW+   
Sbjct: 470  TSTEFDSFSSG-VHQNQIEMSGEIYSWLSILWVRGFHHDNPLVRCLIMQFFLTIEWRDKV 528

Query: 543  NCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIA 602
             C KS+PE+F++GPF+E LNDPV HKDFG KG+YSS+T+E AA F+ QY + LD R ++ 
Sbjct: 529  PCLKSLPETFIIGPFIEALNDPVQHKDFGLKGIYSSKTVEGAARFVCQYTNILDARTRVV 588

Query: 603  FLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECC-GDAFPEKVPEECSPE 661
            FL  L S+A+++SFGRVGL++L+ECIASAA  V      + EC  G +   +  E+  P 
Sbjct: 589  FLHQLTSLARKKSFGRVGLISLSECIASAASIVGFDYNIEGECFNGSSLSSQ--EDLIPY 646

Query: 662  NFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTF 721
            +  C  K +LLD LRFV+ESSKQHFNP+YRL+            VC K LEAAAS++CT 
Sbjct: 647  SLEC--KLELLDDLRFVVESSKQHFNPSYRLQ------------VCAKALEAAASVLCTS 692

Query: 722  EVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPI 781
             + LE++LHF+SALPRE TDYGG LR +++ WL GC K+     C +    +KSL +FP 
Sbjct: 693  NLALEVVLHFVSALPREATDYGGCLRRKMQNWLLGCGKK----CCSTETKFMKSLIEFPK 748

Query: 782  SFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICK 841
             F +H   S+A VT DDE+L++WE +AKRWARV FL +K E  L  +L FI N G+NICK
Sbjct: 749  RFVTHNHSSDASVTYDDEELEAWECEAKRWARVVFLAVKKEHHLKSILTFIHNYGLNICK 808

Query: 842  QSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSL---KTVDQFSYAEA 898
            Q   +  I +KFLIL +  +QE+Q++Q++   C      KSE D L   +  D  SYAE 
Sbjct: 809  QKGDLEGIRVKFLILIMTLVQELQLVQQQIGHCDY----KSEFDDLTMSQPSDNLSYAEP 864

Query: 899  SIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFST 958
            +IF +K+ NL P++  ELV F+ +SCSIFWSN+  +ET LP SV GKLGGPSQRRL  S 
Sbjct: 865  TIFSQKIVNLLPSLQVELVSFATMSCSIFWSNVKSDETTLPGSVKGKLGGPSQRRLPSSV 924

Query: 959  TTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCL 1018
             T+VL A+ S KAVASI S C + +   S     +F+     KT+ SP   SESGAE+CL
Sbjct: 925  ATLVLLAVTSTKAVASIMSCCRQFQILCSSNSGVEFLLTFLLKTVSSPVYHSESGAEICL 984

Query: 1019 AAYEALASALKALVG---PQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAG 1075
            A YEALAS L+ LV     +AL F +    +    VEG+PLLDS +  F Q++N +L AG
Sbjct: 985  ATYEALASVLQVLVSEFSSEALRFVQDESTIHHPRVEGRPLLDSLILTFHQHVNGILDAG 1044

Query: 1076 VLARARRAILLNWKWLCLESLLSLPYCGLENGANC---SYFFSDDVVRYIFNDLVESLEN 1132
            VL R RRA+LL WKW CLESLLS+PYC L+NG +    + F S+  +  IFNDLVESLEN
Sbjct: 1045 VLVRTRRAVLLKWKWHCLESLLSIPYCALQNGISLEDNNAFLSEATLLQIFNDLVESLEN 1104

Query: 1133 AGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVA 1192
            AGE S+LPMLR VRL L LF  G+SG LV+SC GV+++MMW LV SSWILH+SCNKRRVA
Sbjct: 1105 AGESSVLPMLRLVRLILCLFYKGNSGLLVTSCNGVNSEMMWRLVHSSWILHVSCNKRRVA 1164

Query: 1193 PIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWL 1252
             IA LLSSVLH S FSE  MH+ +  PGPLKWF+EK+LEEGTKSPRT RLAALHLTG+WL
Sbjct: 1165 HIAVLLSSVLHSSAFSEINMHLSDGGPGPLKWFIEKILEEGTKSPRTFRLAALHLTGMWL 1224

Query: 1253 TNPWIIKYYIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINT 1312
            ++PW IKYY+KELKLL+LYGS+AFDEDFEAEL + +D +TEVSLLA+SP PELTE FINT
Sbjct: 1225 SHPWTIKYYLKELKLLSLYGSIAFDEDFEAELTD-HDTQTEVSLLAESPDPELTEVFINT 1283

Query: 1313 ELYARVSVAVLFSKLAD--QTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYK 1370
            ELYARVSVA LF KLAD    E+      C DA++SG+LFLL LLD VVN  DLA+ELYK
Sbjct: 1284 ELYARVSVATLFHKLADLAMVELSNEYGSCYDAVESGRLFLLELLDSVVNSNDLAKELYK 1343

Query: 1371 KYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYL 1430
            K+SAIHRRK+RAWQM+CILSRFV  DI+ QVT+ LH+ L +NNLPSVRQYLETFAI+IYL
Sbjct: 1344 KHSAIHRRKIRAWQMMCILSRFVCEDIIQQVTNSLHVCLSKNNLPSVRQYLETFAISIYL 1403

Query: 1431 KFPSLVAEQLVPILRDYDMRPQA----LSSYVFIAANVILHASKAVQFRHLEDLLPPIVP 1486
            KFP+LV EQLVPIL+DY+M+PQ     LSSYVFIA NVILHA++ VQ  HL++LLP +VP
Sbjct: 1404 KFPTLVKEQLVPILQDYNMKPQVTISVLSSYVFIATNVILHANEDVQSSHLDELLPSLVP 1463

Query: 1487 LLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLR 1546
             LTSHHHSLRGFTQLLVY VLCK FP + F  +  MPLEK CFEDLKSYL KN DC RLR
Sbjct: 1464 QLTSHHHSLRGFTQLLVYHVLCKFFPAMKFRPTGYMPLEKRCFEDLKSYLEKNPDCVRLR 1523

Query: 1547 ASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKD 1606
            ASM GYL AY+P  S+TP+ IF +R K+L FECVPTSLMEQVLNFLNDVREDLR SMA D
Sbjct: 1524 ASMEGYLHAYNPVSSVTPSGIFSSRVKDL-FECVPTSLMEQVLNFLNDVREDLRCSMAND 1582

Query: 1607 VVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSSSSF 1666
            +  IKNES K  E  +     SD+++E S S+LP  + LDFQKK+TL KHE +D  +SS+
Sbjct: 1583 LTAIKNESFKTNEGHNLIGISSDINEENSTSKLPVATSLDFQKKVTLSKHEKKDTETSSY 1642

Query: 1667 FGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLART 1726
             G++EAYK L E+E ED+L +Q+L +RSL+ME +R +RQ  +LVASL+DRIPNLAGLART
Sbjct: 1643 LGSKEAYKFLHELEGEDQLLNQLLHSRSLSMENLRTNRQDIILVASLLDRIPNLAGLART 1702

Query: 1727 CEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGL 1786
            CEVFKASGLAIAD N+L+DKQFQLISVTAEKWVPIVEVPVNS+K FLE+KK EGFS+LGL
Sbjct: 1703 CEVFKASGLAIADLNVLNDKQFQLISVTAEKWVPIVEVPVNSMKLFLEKKKREGFSILGL 1762

Query: 1787 EQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAI 1846
            EQTANS+PLDQY FPKKTVLVLGREKEGIPVDIIH+LDAC+EIPQLGVVRSLNVHVSGAI
Sbjct: 1763 EQTANSVPLDQYAFPKKTVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAI 1822

Query: 1847 ALWEYTRQQR 1856
            ALWEYTRQQR
Sbjct: 1823 ALWEYTRQQR 1832

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449510499\|ref\|XP_004163683.1\| PREDICTED: uncharacterized LOC101213211 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|15236590\|ref\|NP_193496.1\| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi\|332658520\|gb\|AEE83920.1\| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297800328\|ref\|XP_002868048.1\| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297313884\|gb\|EFH44307.1\| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|255566751\|ref\|XP_002524359.1\| RNA binding protein, putative [Ricinus communis] gi\|223536320\|gb\|EEF37970.1\| RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224138732\|ref\|XP_002326676.1\| predicted protein [Populus trichocarpa] gi\|222833998\|gb\|EEE72475.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297745670\|emb\|CBI40924.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|2245119\|emb\|CAB10541.1\| TRP-185 like protein [Arabidopsis thaliana] gi\|7268513\|emb\|CAB78764.1\| TRP-185 like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|242037305\|ref\|XP_002466047.1\| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor] gi\|241919901\|gb\|EER93045.1\| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|359495741\|ref\|XP_003635077.1\| PREDICTED: uncharacterized protein LOC100855390 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1857
TAIR\|locus:2129301		1850	AT4G17610 [Arabidopsis thalian	0.969	0.973	0.525	0.0
DICTYBASE\|DDB_G0285499		1677	DDB_G0285499 "Probable methylt	0.254	0.281	0.314	5.7e-62
DICTYBASE\|DDB_G0278965		1680	DG2033 "tRNA/rRNA methyltransf	0.083	0.092	0.490	6.7e-51
UNIPROTKB\|Q13395		1621	TARBP1 "Probable methyltransfe	0.082	0.094	0.555	4.9e-45
UNIPROTKB\|J9P5E1		1415	TARBP1 "Uncharacterized protei	0.082	0.108	0.562	1.3e-44
UNIPROTKB\|F1PWU0		1435	TARBP1 "Uncharacterized protei	0.082	0.106	0.562	1.5e-44
UNIPROTKB\|F1RGW6		1625	TARBP1 "Uncharacterized protei	0.082	0.094	0.555	2e-44
UNIPROTKB\|F1N6T6		1313	TARBP1 "Uncharacterized protei	0.091	0.128	0.511	6.9e-44
UNIPROTKB\|F1NP06		1311	TARBP1 "Uncharacterized protei	0.089	0.126	0.514	1.8e-42
ZFIN\|ZDB-GENE-090313-346		1578	tarbp1 "TAR (HIV-1) RNA bindin	0.091	0.107	0.497	1.3e-41

TAIR\|locus:2129301 AT4G17610 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4598 (1623.6 bits), Expect = 0., P = 0.
 Identities = 985/1873 (52%), Positives = 1253/1873 (66%)

Query:    20 FKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLS----KDAIKEGQKLDSDQCNYIASM 75
             FK VPPAAIP  LDC+L+STG S S +F SL++      +D +   ++ DSD CN+IAS+
Sbjct:    13 FKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSDDCNHIASL 72

Query:    76 VGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVV 135
             V  LCHLLK  G    F+A  NH+A Q F+W+ FIPLMKM  A++ ++LN+I ESFFDVV
Sbjct:    73 VAGLCHLLKNFG----FVAADNHNALQLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDVV 128

Query:   136 TKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKEC 195
              +TN    L  +LVP +  SVGFS+G+ Q+EESD I+WG        +   N  DMD+  
Sbjct:   129 IETNVLDMLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLC----LRDSLNTIDMDENY 184

Query:   196 MLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTE 255
             +  LS S  +P SCH+L L++++A ++ QAAP  +S          FAA +LW LCN TE
Sbjct:   185 IAQLSGSFPIPLSCHLLNLILNAAFQSHQAAPKVES----------FAAGMLWDLCNTTE 234

Query:   256 RLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFS 315
             RLL QSVEHRSCA++FLLP I KAF S  S +IS  G+++ILSR  F K+IW+CC+ LFS
Sbjct:   235 RLLSQSVEHRSCAVSFLLPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECCKKLFS 294

Query:   316 LGTLERRDAFTVXXXXXXXXXXTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGL 375
             +G++ERRDA++V          T+G+E+        +FD+R+ +EFW+EIK GLV +E L
Sbjct:   295 VGSIERRDAYSVLSLCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESL 354

Query:   376 VRKQSLHILKAVLQIRGENQGHSGVSDMRSQGKNSTARGMTKRDLWAVKEAKSLGVGKLC 435
             VRKQSLHILK+VL I   ++  S      +    S  R  T  +  A  ++  +G     
Sbjct:   355 VRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTRKETWAEKEA--KSLGVGELYGS 412

Query:   436 YSTDLALKQGQQQWEAFILLYE-----MLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPG 490
               + L  +QG Q +     + E     ++E   ++ ++       +L    +L  D    
Sbjct:   413 VDSGLTSQQGWQAFLLLYEMLEEYGTHLVEAAWSNQIDLLIKS--SLRYDGTLKSDC--N 468

Query:   491 STGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPE 550
             ++   H        +IF+WL VLW RGF H NP VR  +M+SF GIEW+ Y+ C +S+ +
Sbjct:   469 NSHHGHMETPDEEAKIFNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQ 528

Query:   551 SFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASV 610
             +F+LGPF+EGLNDP HHKDFG KG+Y+SRTIE AA ++  Y S L+ R ++ FL NLAS+
Sbjct:   529 TFVLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASL 588

Query:   611 AKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSD 670
             AK+QSF R G MAL +CI S A  V  + + +     D F     +E S  +   +D + 
Sbjct:   589 AKKQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKF-SGTAQESSCGHLSQDDMTH 647

Query:   671 LLDFLRFVIESSKQHFNPNYRLRG----YSFWQFKLW-----FPVCEKVLEAAASLMCTF 721
             +LD L+FV ESS+QHFN  YR+R      +  +F L      F V +KVLE AAS++   
Sbjct:   648 ILDVLKFVAESSRQHFNHKYRIRASLTILNTLKFLLLIVLFHFLVYQKVLETAASVVNPC 707

Query:   722 EVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPI 781
              VPL  LL F+SA+PREFTD+ G LR  + EWL GC+++ S + C     +L SL ++  
Sbjct:   708 NVPLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLK 767

Query:   782 SFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICK 841
              FTS     N   + DDEDL++W+S+ KRWARVFFL+I  E+ L  ++ F+QN G++  +
Sbjct:   768 GFTS----DNV-ESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQ 822

Query:   842 QSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIF 901
             + NH++    KFLI  L+ L E+Q MQ+  SE    +++KS I S +   +    +AS  
Sbjct:   823 EKNHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSI 882

Query:   902 HEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTV 961
              +K A +  ++L+EL+ F++ SCSIFWS+  +E   LP SVIGKLGGPSQRRLS  TTT 
Sbjct:   883 KKKFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTA 942

Query:   962 VLQAIMSVKAVASISSWCARLKRNAS-IEFAYDFMWNLFWKTIQSPTSDSESGAEVCXXX 1020
             VL+A++SVK +  ISS+CA+       ++ A  F W     TI S   +SE+ AE+    
Sbjct:   943 VLEAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAA 1002

Query:  1021 XXXXXXXXXXXVGPQALCFFK--KNDKLMLSAVEGKPLLDSWVQAFLQNINXXXXXXXXX 1078
                        V   +   F   +ND  +LS V+G+  L   V AF++NIN         
Sbjct:  1003 FEALASVLNAFVSLCSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLV 1062

Query:  1079 XXXXXXXXNWKWLCLESLLSLPYC--GLENGANCSYFFSDDVVRYIFNDLVESLENAGEG 1136
                     +WKWLC+ESLLS+ +         +   FFSDD V+ IF D+VESLENAGEG
Sbjct:  1063 RSRRAVLLSWKWLCVESLLSVMHILDARRIPEDRKSFFSDDTVKSIFQDIVESLENAGEG 1122

Query:  1137 SLLPMLRSVRLTLDLFAXXXXXXXXXXCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAA 1196
             S LPML+SVRL L + A            GVDTQ MW LV+S WILHISC KRRVAPIAA
Sbjct:  1123 SALPMLKSVRLALGILASGKSSLDGFS--GVDTQTMWQLVKSCWILHISCKKRRVAPIAA 1180

Query:  1197 LLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPW 1256
             LLSSVLH S+FS ++MH+ E+  GPLKWFVEKVLEEG KSPRTIRLAALHL+GLWL  P 
Sbjct:  1181 LLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLEEGQKSPRTIRLAALHLSGLWLMYPR 1240

Query:  1257 IIKYYIKELKLLTLYGSVXXXXXXXXXXXXNYDAKTEVSLLAKSPVPELTEAFINTELYA 1316
              IKYYIKEL+LLTLYGSV            N DA+TEVSLLAKSP PELTE FINTELYA
Sbjct:  1241 TIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAKSPDPELTELFINTELYA 1300

Query:  1317 RVSVAVLFSKLADQTEIVGSA---KECQDAXXXXXXXXXXXXXXVVNDKDLARELYKKYS 1373
             RVSVA LF KLA+   +V  A   ++CQDA               V+DKDLA+ELYKKYS
Sbjct:  1301 RVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGKLFLLELLDAAVHDKDLAKELYKKYS 1360

Query:  1374 AIHRRKVRAWQMICILSRFVDNDIVGQV---THF-LHISLY----RNNLPSVRQYLETFA 1425
             AIHRRK+RAWQMICI+SRFV NDIVGQV    H  LH+SL     RNNLP+VRQYLETFA
Sbjct:  1361 AIHRRKIRAWQMICIMSRFVCNDIVGQVMDSVHICLHVSLQEQTERNNLPAVRQYLETFA 1420

Query:  1426 ITIYLKFPSLVAEQLVPILRDYDMRPQA--LSSYVFIAANVILHASKAVQFRHLEDLLPP 1483
             I IYLKFP+LV EQLVPIL++YD + Q     + + + ANVILHA K  Q  HL +LLPP
Sbjct:  1421 INIYLKFPALVKEQLVPILKNYDSKAQVNLRKTKMIVFANVILHAEKIAQQTHLRELLPP 1480

Query:  1484 IVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCT 1543
             I+PLLTSHHHSLRGF QLLV++VL +LFP ++  +S  + LEK  FE+LKSYL KN DC+
Sbjct:  1481 ILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESTSSHTISLEKLSFENLKSYLDKNPDCS 1540

Query:  1544 RLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSM 1603
             RLRASM G+LDAYDP+ S TPA +FVNR +E EFECVPT LM+ VL+FLNDVREDLR SM
Sbjct:  1541 RLRASMEGFLDAYDPSTSATPAGVFVNRVEESEFECVPTCLMDNVLSFLNDVREDLRASM 1600

Query:  1604 AKDVVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSS 1663
             AKDVVTIKNE  KI E+P     +S  D+E    +L + S LDFQ+KITL KHE QD SS
Sbjct:  1601 AKDVVTIKNEGFKIDEEPKRRLIMSTTDEE----RLSEPSSLDFQRKITLSKHEKQDASS 1656

Query:  1664 SSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGL 1723
             +S   N E YK+L E+EKEDEL  Q+L++RS+ +E +++ RQ  +LVASL+DRIPNLAGL
Sbjct:  1657 TSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLILVASLVDRIPNLAGL 1716

Query:  1724 ARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSV 1783
             ARTCEVFKAS LA+ADA+I+HDKQFQLISVTAEKWVPI+EVPVNS+K FLE+KK EGFS+
Sbjct:  1717 ARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSI 1776

Query:  1784 LGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVS 1843
             LGLEQTANS+ LD+Y FPKKTVLVLGREKEGIPVDIIH+LDACIEIPQLGVVRSLNVHVS
Sbjct:  1777 LGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVS 1836

Query:  1844 GAIALWEYTRQQR 1856
             GAIALWEYTRQQR
Sbjct:  1837 GAIALWEYTRQQR 1849

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS

DICTYBASE\|DDB_G0285499 DDB_G0285499 "Probable methyltransferase TARBP1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0278965 DG2033 "tRNA/rRNA methyltransferase SpoU family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13395 TARBP1 "Probable methyltransferase TARBP1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P5E1 TARBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWU0 TARBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RGW6 TARBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N6T6 TARBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NP06 TARBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-090313-346 tarbp1 "TAR (HIV-1) RNA binding protein 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.34	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1857
pfam00588		142	pfam00588, SpoU_methylase, SpoU rRNA Methylase fam	2e-27
COG0566		260	COG0566, SpoU, rRNA methylases [Translation, ribos	2e-24
PRK10864		346	PRK10864, PRK10864, putative methyltransferase; Pr	3e-11
COG0219		155	COG0219, CspR, Predicted rRNA methylase (SpoU clas	1e-09
TIGR00185		153	TIGR00185, tRNA_yibK_trmL, tRNA (cytidine(34)-2'-O	1e-09
TIGR00186		237	TIGR00186, rRNA_methyl_3, rRNA methylase, putative	7e-08
PRK11081		229	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltran	7e-07

>gnl\|CDD\|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family	Back alignment and domain information

 Score =  109 bits (274), Expect = 2e-27
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD--ANILHDKQFQLISVTAEKWVPIVE 1763
              ++V        NL  +ART   F A GL + +      ++ +    S  A   +P+V 
Sbjct: 1    PLIVVLDEPQDPGNLGAIARTAAAFGADGLILVEPRCADPYNPKAIRASAGALFHLPLVI 60

Query: 1764 VPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHML 1823
            V  ++++  L+  K  GF ++    +    PL +  FPKK  LV G E  G+  +++ + 
Sbjct: 61   V--DNLEEALKDLKEAGFWIIAT--SLKGKPLYEIDFPKKVALVFGNEGTGLSNEVLELC 116

Query: 1824 DACIEIPQLGVVRSLNVHVSGAIALW 1849
            D  + IP  G V SLNV V+ AI L+
Sbjct: 117  DRLVRIPMSGEVESLNVAVAAAIILY 142

This family of proteins probably use S-AdoMet. Length = 142

>gnl\|CDD\|223640 COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|236779 PRK10864, PRK10864, putative methyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|223297 COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|211559 TIGR00185, tRNA_yibK_trmL, tRNA (cytidine(34)-2'-O)-methyltransferase	Back alignment and domain information

>gnl\|CDD\|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3	Back alignment and domain information

>gnl\|CDD\|236837 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1857
KOG0839		1477	consensus RNA Methylase, SpoU family [RNA processi	100.0
COG0566		260	SpoU rRNA methylases [Translation, ribosomal struc	100.0
TIGR00186		237	rRNA_methyl_3 rRNA methylase, putative, group 3. t	100.0
PRK11181		244	23S rRNA (guanosine-2'-O-)-methyltransferase; Prov	100.0
PRK10864		346	putative methyltransferase; Provisional	100.0
PRK11081		229	tRNA guanosine-2'-O-methyltransferase; Provisional	100.0
TIGR00185		153	rRNA_methyl_2 rRNA methylase, putative, group 2. t	99.97
PF00588		142	SpoU_methylase: SpoU rRNA Methylase family; InterP	99.96
PRK10358		157	putative rRNA methylase; Provisional	99.96
TIGR00050		233	rRNA_methyl_1 RNA methyltransferase, TrmH family,	99.92
PRK15114		245	tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr	99.9
KOG2506		371	consensus SpoU rRNA Methylase family protein [Tran	99.88
COG0219		155	CspR Predicted rRNA methylase (SpoU class) [Transl	99.88
PRK10433		228	putative RNA methyltransferase; Provisional	99.87
KOG0838		271	consensus RNA Methylase, SpoU family [RNA processi	99.81
COG0565		242	LasT rRNA methylase [Translation, ribosomal struct	99.74
PRK03958		176	tRNA 2'-O-methylase; Reviewed	97.33
PF09936		185	Methyltrn_RNA_4: SAM-dependent RNA methyltransfera	96.17
COG4080		147	SpoU rRNA Methylase family enzyme [General functio	96.01
COG1303		179	Uncharacterized protein conserved in archaea [Func	94.55
PRK12703		339	tRNA 2'-O-methylase; Reviewed	90.93

>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.3e-186  Score=1677.47  Aligned_cols=1455  Identities=27%  Similarity=0.322  Sum_probs=1267.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcccccCCChhHHHHHHHHHhHHhHhhhccCChHHHHHHHHHhhhhhccccchhhccccccc
Q 000208           71 YIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVP  150 (1857)
Q Consensus        71 ~~~s~~~~~chll~~~~~~~~~~~~~~~~~~~~~~w~~f~pl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~t~vp  150 (1857)
                      ++.+.+++.||+++.+|+    .+.+++.|.|.+.||+|||+|+|+.|.|.+|.+.|.|.|+|||+.|        .+||
T Consensus         1 ~~~~ll~~~~~pr~~~g~----l~~d~~~a~~le~~r~li~~~~~~~a~ds~~~~~i~E~~~evvi~~--------~lvp   68 (1477)
T KOG0839|consen    1 MVGGLLICKYLPREEQGK----LISDLIQADSLEEVRELIETSPLDIATDSNIETPIFEKITEVVIAY--------ALVP   68 (1477)
T ss_pred             CchhhhhhhcchHHHHhH----HhhchhhhhhHHHHHHHHHhCchhhhhCCCCcchhhHHHHHHHHHH--------hcch
Confidence            356788999999999994    6899999999999999999999999999999999999999999988        8999


Q ss_pred             ceeccccccccccccccccccccCCCCCCccCCCCCCCccchhhhhcccccccccchhhhHHHHHHHHHHHhcccCCChh
Q 000208          151 CIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTD  230 (1857)
Q Consensus       151 ~~~rs~~~~m~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~l~~~l~~~~~~~~~~  230 (1857)
                      +..|++|.+|||.||++++...|..+    |++    .++|+.....+.+  || |.+||.|..||+++++.++++|..+
T Consensus        69 ~l~r~~grs~g~~~~~~~~~~~~~~~----cLr----s~~~~~~v~~~~r--l~-~l~~e~l~~lln~~f~~~~a~p~ve  137 (1477)
T KOG0839|consen   69 GLAREMGRSSGAEMNKALRTSAQLLC----CLR----SVWHKFQVWMSYR--LN-DLISENLKHLLNDNFGKKIAQPFVE  137 (1477)
T ss_pred             HHHHHcCcccCCCCchhchhHHhhhh----hhh----hhhHHHHHHHhcc--cc-HHHHHHHHHHHhhhhccccccHHHH
Confidence            99999999999999999999999886    444    7899999998875  99 9999999999999999999999888


Q ss_pred             HHhhccchhhhhhhhHHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHhhcccceeeeeccceeeechhhhHHHHHhhh
Q 000208          231 SLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCC  310 (1857)
Q Consensus       231 ~~~~~~~~~~~~~~~l~w~l~~~~~~~~~~~~e~rsca~~~ll~~~~~~~~~~~~~~~~~~~~~~~~sr~~f~~~iw~~c  310 (1857)
                      ++.          +...|++|+-.++|+.++.+||+|++.++.|.+.+|.++++++.|+.      |+|.|        |
T Consensus       138 sfA----------a~~~~~~~~e~~~Ll~~s~~h~~~~v~~~~~~~~~a~s~~~~~~iv~------L~~cg--------~  193 (1477)
T KOG0839|consen  138 SFA----------AEQNANIKHENLHLLILSLLHYLEVVYLFDECKNGASSKCLDFIIVP------LLGCG--------S  193 (1477)
T ss_pred             HHh----------ccccccCcCccchHHHHHHHHHHHHHHhcccccccccchhhhhhhHH------hhcCC--------c
Confidence            877          88999999999999999999999999999999999999999999988      99999        9


Q ss_pred             hhcccccchhccchhhHHHHHhhccccccCCCCCCCCCCcccchhhhhHHHHHHHHhcccCccchhhhhHHHHHHHHhhh
Q 000208          311 RTLFSLGTLERRDAFTVLSLYLSYSSYTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQI  390 (1857)
Q Consensus       311 ~~lf~lg~~er~day~ilSl~l~~~~~~~~~~~~~~~~~~~~~d~r~~~~fW~~i~~glvd~d~LvRKqs~~iLk~~l~i  390 (1857)
                      ..+||+|..+++|||.+||.+.++                   |.|.++.|||+|+.|++--...||||.++|.+-++.|
T Consensus       194 ~~~as~gS~~mrda~svLS~ca~t-------------------d~r~e~~~wDeik~~~~ag~~~vrkq~f~i~~~~l~i  254 (1477)
T KOG0839|consen  194 EEIASSGSKLMRDAISVLSKCANT-------------------DSRFEKLIWDEIKQLYAAGSQQVRKQKFSISFLLLFI  254 (1477)
T ss_pred             hhhhcccchHHHHHHHHHHHHhcc-------------------cccccccchHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999871                   4588999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCccccCCC-CCCcCCchhhhhhhhhhhhccCccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhHhh
Q 000208          391 RGENQGHSGVSDMRSQGKN-STARGMTKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEA  469 (1857)
Q Consensus       391 ~~~~~~~s~~~~~~~~~~~-~~~~~~tk~~~Wa~keakslgvg~~~~s~~~~~~~~q~~w~~f~llyE~l~e~~tHlve~  469 (1857)
                      .+.....++    +.+++. .+++.|+..+.|+.+|+|+||||.+..|.+..+ +   .|.+|++|||||||||+|+|+|
T Consensus       255 ~aa~lt~~~----~kye~~~av~rs~~l~ad~~~~e~r~lavs~l~~s~~kgs-~---~W~~f~tl~E~LEe~q~H~i~p  326 (1477)
T KOG0839|consen  255 LAAELTPEL----IKYEKTDAVWRSIQLEADNDVHEHRKLAVSILKLSIQKGS-S---HWITFQTLFEKLEELQNHEILP  326 (1477)
T ss_pred             HHhhhhHHH----HhHhhhhhHHHhhhcccccCCcchhcccHHHHHHHHhccc-h---HHHHHHHHHHHHhcccceEeec
Confidence            877766554    556666 899999999999999999999999999988877 3   9999999999999999999999


Q ss_pred             hhhhhhhhhccccCCCCCCCCCCccccccccCCcccchhHHHHHHhhccCCCChhHHHHHHHhhhhhcccccccccccCC
Q 000208          470 AWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVP  549 (1857)
Q Consensus       470 ~W~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~W~~iL~~rgf~h~Np~vr~~vm~sfl~i~~~~y~~~~~~~p  549 (1857)
                      ||++.++| +| ++++||.-                 +.|++|+|.|||.||||-+||.+|++||+|+|++|++|   +|
T Consensus       327 vwpkfdtL-~e-svr~Dg~l-----------------nqWl~v~~~R~f~hdN~~lr~~~~e~flsi~~~~~k~~---~~  384 (1477)
T KOG0839|consen  327 VWPKFDTL-YE-SVRLDGSL-----------------NQWLAVKQDRIFIHDNEHLRHSWGEIFLSIGLKSSKES---VR  384 (1477)
T ss_pred             hhhHHHHH-HH-HHHHcCch-----------------hHHHHHHHHHHHhccCCeeeehhhhhhhhhchhhhccc---ch
Confidence            99966665 89 88999433                 49999999999999999999999999999999999999   55


Q ss_pred             ccccchhhhhccCCCccccccCCCCcccchhHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000208          550 ESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIA  629 (1857)
Q Consensus       550 ~~Fvlgpli~~lnd~~~~k~f~~kgvy~s~~i~~a~~f~~~Y~~~l~~~~~~~fl~~l~s~ak~~sf~r~~lm~l~~~ia  629 (1857)
                      . ||+||||.+||+|.||+|++++|+|.||++..|++|...|++|+.+++++.|+.||+|.++           +-+||.
T Consensus       385 ~-fi~g~~i~~Ln~s~~~sd~pl~~i~~sp~~~~a~qf~v~y~Scl~~e~~s~Fl~nlls~~t-----------l~~Civ  452 (1477)
T KOG0839|consen  385 K-FIMGLMISILNMSAFSSDLPLLTITLSPAAMSAHQFDVKYVSCLHGEKLSLFLNNLLSQTT-----------LHECIV  452 (1477)
T ss_pred             h-HhhhhhhhcccchhhcccCCccccccchhHHHHHHHHhhhcccCCchhhHHHHHHHHHHhH-----------hHhhhH
Confidence            4 9999999999999999999999999999999999999999999999999999999999996           788899


Q ss_pred             HhcccccccccccccccCCCCCCCCcccCCCCCCccCCchhhHHHHHHHHHhhhcccCccccccccccccccccchhhHH
Q 000208          630 SAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEK  709 (1857)
Q Consensus       630 s~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~s~~~~n~~~r~~~~~~~~~~~~~~~~e~  709 (1857)
                      ++...|+++..-            ...++    +...|....+|+++++.+.++||+|++| .| +.+|-.++.|  ..|
T Consensus       453 ~ilfvv~al~~v------------~~e~s----L~~Ddi~~~~dvL~fv~~~~q~~inhk~-ir-l~Ti~NL~df--yak  512 (1477)
T KOG0839|consen  453 DILFVVLALLNV------------EKETS----LDPDDIYLSYDVLVFVQNNKQKTINHKH-IR-LSTIRNLYDF--YAK  512 (1477)
T ss_pred             HHHHHHHHhhcc------------ccccc----cCccccHHHHHHHHHHHHhhhhhcCcch-hh-HHHHHHHHHH--HHH
Confidence            998888888421            11121    3467789999999999999999999999 87 7788776666  888


Q ss_pred             HHHhhhhcccccccchhHHHHHHhcccchhhccccchHHHHHHHhcccccccccccchhHHHHHhhcccCCCcccccCCC
Q 000208          710 VLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSL  789 (1857)
Q Consensus       710 ~l~~~~s~~~~~~i~~~~~~~~i~~iP~eft~y~g~lr~~~~~Wl~g~~~~~~n~~~~~~~~ll~~~~d~p~~f~~~~~~  789 (1857)
                      |...++++.+    ||+.++.||+.     +|..|.||.++-+|..      .|..|.++.+.+.+.|.+-+.|+     
T Consensus       513 v~~l~~tl~~----~Lg~llsyis~-----~v~~s~l~~~~~~~iq------lN~~~~d~v~~la~~y~~l~~fh-----  572 (1477)
T KOG0839|consen  513 VEVLETTLQT----ILGKLLSYISP-----SVSASELLFTLVSHIQ------LNGGTYDYVEPLAEDYRDLAVFH-----  572 (1477)
T ss_pred             HHHHHHHHHH----HHhhhhheeCc-----ccchhHHHHHHHHHHH------hccchhHhHHHHHHHhhHhhhhh-----
Confidence            9999999998    99999999997     9999999999999998      34559999999999999977776     


Q ss_pred             CCcccccCchhhhhhHHHHHHHHHHHhhhccCccchhHHHHHHHhcCcccccccCcccccchhhHHHHHHHHHHHHH--H
Q 000208          790 SNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQI--M  867 (1857)
Q Consensus       790 ~~~~~~~d~e~~~~~~~~~~~~aR~~~~~~~~e~~l~~i~~~~~~~~~~~~~~~~~~~~~~~kf~i~~~~~~~el~~--~  867 (1857)
                          ..|||++...|.+...+|+|++.+++++|.+++.|-.|+.+ +...+++.++....|.|++++++.+|.|+++  +
T Consensus       573 ----~~Fdd~~~~l~l~~~~~w~~mf~l~i~Ker~l~di~ifvd~-llevl~ek~~~~~~P~k~ltf~LqLLlelpn~~~  647 (1477)
T KOG0839|consen  573 ----DWFDDLQAKLNLTTNIGWDTMFDLLISKERDLKDIDIFVDF-LLEVLKEKQDIPVYPSKALTFLLQLLLELPNNGY  647 (1477)
T ss_pred             ----hhhhhhhhhhhhHhhhhHHHHHHHHhhhhhhhhhheeeech-HHHHHHhcccccccchHHHHHHHHHHHhCccccc
Confidence                57999999999999999999999999999999999999999 9999999999999999999999999999999  8


Q ss_pred             HHHhhcccceecchhhccccccccccchh---hhhhhHHHhhhhhHHHHhhhhccCCCccceeccccccccCCCCCcccc
Q 000208          868 QERYSECGIRIRTKSEIDSLKTVDQFSYA---EASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIG  944 (1857)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~il~~~~~~~~~~~~if~~~~~~~~~~~~~s~~~  944 (1857)
                      ++..+...-.+++     +.|+.++.+.+   ..+.++|+.  ++.++..+.+.+.+.+|    +|              
T Consensus       648 ~dgsS~~l~svkn-----f~gSte~si~qiil~kssm~k~~--~l~~l~~~hIyl~~~~c----sH--------------  702 (1477)
T KOG0839|consen  648 TDGSSTALLSVKN-----FTGSTEKSINQIILFKSSMEKFS--LLKFLFFAHIYLKTYEC----SH--------------  702 (1477)
T ss_pred             cccchHHHHhhcc-----cccchhhhhHHHHhhHhhHHHHH--HHHHHHHhhhhHhhhhh----hh--------------
Confidence            8888777766664     44655444432   356677765  78888999999999999    43              


Q ss_pred             ccCCCCcccccccchHHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 000208          945 KLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAAYEAL 1024 (1857)
Q Consensus       945 ~~~~~~q~~l~~~~~~~~~~~i~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~l 1024 (1857)
                       +||      +.+++.+++|++-.|++       |++++      -++.|+|++.-.+++++-+..++|+++++++.|+|
T Consensus       703 -rg~------sipl~~Avlq~L~emkt-------c~sat------~~Laff~k~~d~~pssq~e~l~a~~~~yll~~e~l  762 (1477)
T KOG0839|consen  703 -RGD------SIPLNFAVLQSLYEMKT-------CKSAT------QCLAFFFKVKDSAPSSQFELLNAFLKTYLLNRESL  762 (1477)
T ss_pred             -cCC------cccchHHHHHHHHHhhh-------hHHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhhh
Confidence             555      78999999999999998       76665      78999999999999999999999999999999999


Q ss_pred             -HHHHHhhc---cccchhhhcccchhhhhhhcCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhhccc
Q 000208         1025 -ASALKALV---GPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLP 1100 (1857)
Q Consensus      1025 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~in~~~~~~~~~~~~~a~~~~~kW~~~~~lLs~~ 1100 (1857)
                       +.+.++.|   +..+.++++ | .+.++...+.++|..+|..+..+||+++..||+.+.|++++-.|+|.|+=+=.-++
T Consensus       763 ~~~~~k~hvel~s~~efnl~~-n-stlls~~~~~~~l~kiI~~yih~~nq~l~~~vl~~k~~~~~ps~~wecil~ar~i~  840 (1477)
T KOG0839|consen  763 EGNDDKLHVELRSVDEFNLKD-N-STLLSNLAVCKLLYKIIDSYIHCSNQVLDDDVLIVKFIFEKPSFIWECILSARLIL  840 (1477)
T ss_pred             ccccchhhHHHHhcccccccc-c-hhHHHHHHHHHHHHHHHHHHHhccchheecchhhhhhHhhhhhHHHHHHHHHHhhh
Confidence             99999988   778888777 4 78888899999999999999999999999999999999999999999954433333


Q ss_pred             cccccCCCCcccccchhhHHHHHHHHHHHHHhhCCCCchhHHhHHHHHHhhhhcCCCCCccccccCCChHHHHHHHHHHH
Q 000208         1101 YCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSW 1180 (1857)
Q Consensus      1101 ~~~~~~~~~~~~~~s~~~~r~~~~~~lEsL~~Ag~gs~lpil~sl~ilL~~l~~~~~~s~~ss~~g~~~~~m~~L~~ssW 1180 (1857)
                      -+       .-.+++.+++|.+|..+++  |++++++-+|+++|.++.....++++++      -.||.+.|+|++.+- 
T Consensus       841 ke-------rdt~lslD~Ik~~fh~iv~--e~~~~sn~lp~l~Sf~la~hi~~Sgs~S------~~v~~q~~~qll~sq-  904 (1477)
T KOG0839|consen  841 KE-------RDTVLSLDLIKGLFHPIVL--EKYFGSNQLPDLLSFKLAEHIQTSGSLS------YSVNRQSLLQLLGSQ-  904 (1477)
T ss_pred             Hh-------hhhhhhHHHHHHhhHHHhh--hhhcCccccchHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHH-
Confidence            33       4568999999999999999  9999999999999999999999987766      348999999999998 


Q ss_pred             HHhhccCCCcchhHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHhCCCCccHHHHHHHHHhhhhhcCcchhHH
Q 000208         1181 ILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKY 1260 (1857)
Q Consensus      1181 ~a~~dsn~r~~a~iaAfvs~vlhpslF~~~elh~~~~~~g~lKwfv~k~L~~gs~spRi~~lla~hl~~~Wl~~P~~a~~ 1260 (1857)
                       ++..|   +.++|++++.-++| +.+.|.++|         +|           +|+++++++.+       +|...  
T Consensus       905 -L~Ia~---~~~pIa~il~k~l~-s~~~n~dvn---------~W-----------sp~nI~lg~f~-------~p~~~--  950 (1477)
T KOG0839|consen  905 -LTIAA---ALRPIAKILGKLLR-SAIKNEDVN---------YW-----------SPINIILGVFK-------QPQMD--  950 (1477)
T ss_pred             -HHHHH---HhHHHHHHHHHHHH-HHhcccccc---------cc-----------chhhhhHhhcc-------CCccc--
Confidence             77777   67789999999999 899999988         55           89999999988       88887  


Q ss_pred             HHHHHHHHhhccccccChhHHHHhhhhcccccchhhccCCCccccccccccccceehhhHHHHHHHhh-hhhhhcCChhH
Q 000208         1261 YIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLA-DQTEIVGSAKE 1339 (1857)
Q Consensus      1261 Y~~EL~~LlLyg~v~~ded~e~elaE~~~a~tev~~la~sp~~~lte~~~ntd~y~Rv~va~~l~~L~-d~s~~v~s~~e 1339 (1857)
                        +|++.+..|++++||+|             |...+++.|+..++|++.|.++++|++ ++.+.+++ |+ |       
T Consensus       951 --kElrll~~~~s~~Fded-------------e~s~l~kg~d~~l~eV~~nar~~ar~l-a~Kl~~la~Dg-n------- 1006 (1477)
T KOG0839|consen  951 --KELRLLKPVISSLFDED-------------ENSYLIKGHDELLEEVYGNARILARVL-AIKLILLANDG-N------- 1006 (1477)
T ss_pred             --hhhhhhhhhhhhhcccc-------------ccchhhcCCcHHHHHHhcchhhhhHHH-HHHHHHHhccc-c-------
Confidence              89999999999999998             345678889999999999999999999 77777786 43 2       


Q ss_pred             hHHHhhhhHHHHHHHHHHhcCCchhhhhhhccCcHHHHHHHHHHHHHHhhhcccChhHHHhHHHH-HHHhhhcCCChh--
Q 000208         1340 CQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHF-LHISLYRNNLPS-- 1416 (1857)
Q Consensus      1340 ~~~a~~s~klf~~~LL~~~~~d~dlsK~~y~~nS~~HR~KlRlWQtLCvLsp~l~~d~v~~v~d~-I~~aL~~nNlPS-- 1416 (1857)
                            ..+.++.+.+...+.|+|.+|++|+.+|..||+|+|+||+||++++++++++++.+.|+ +..++...|+.|  
T Consensus      1007 ------a~ki~lIE~l~~k~~dkD~akkry~~~Sa~HR~K~RawQlLlll~~~~~~~~~~kv~D~~iic~~~s~qq~S~~ 1080 (1477)
T KOG0839|consen 1007 ------ALKIRLIEKLTEKTNDKDKAKKRYDGASALHRVKLRAWQLLLLLLLTTNENFKNKVSDTSIICILKSIQQESSP 1080 (1477)
T ss_pred             ------HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhcccHhhhcch
Confidence                  44556666666677799999999999999999999999999999999999999999999 666667777777  


Q ss_pred             -HHHHHHHHHHH----HHhhCCchhhhhhhhhhccCCCCccchHHHHHHHH-HHHHhhchhhHHHHHhhhhhhhcccccc
Q 000208         1417 -VRQYLETFAIT----IYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAA-NVILHASKAVQFRHLEDLLPPIVPLLTS 1490 (1857)
Q Consensus      1417 -VRyYIEwFiI~----il~k~P~lle~~Llp~L~D~nlrpqvlsS~v~Iaa-~VLl~~~~~~q~~~L~~lL~~IlPw~tS 1490 (1857)
                       +|+|+|||++.    ++..+|.++++++.+.+.||..+ ..+++...|++ .++++.....|..++++++++++|||++
T Consensus      1081 ~ik~~vew~i~~~~vkfyk~fpkf~de~l~~~lenys~~-vn~~~~eki~f~~~il~~n~~ekk~~lrqllp~fl~~l~~ 1159 (1477)
T KOG0839|consen 1081 LIKVYVEWFISSKVVKFYKTFPKFADEYLFSLLENYSKP-VNVVSAEKICFMVLILLRNDPEKKYGLRQLLPRFLCTLVP 1159 (1477)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCC-cceecHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhh
Confidence             99999999984    45557778888999999999944 55666666666 4455555567789999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHhhHHHhhhcCchhHHHHHHhhccccccCCCCCCCccccccc
Q 000208         1491 HHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVN 1570 (1857)
Q Consensus      1491 h~~sVR~fAqllv~~iL~k~w~~l~~~~s~~~~le~~~l~~l~syL~~N~e~~RlR~~~~~fl~~FdP~~d~t~~~IF~~ 1570 (1857)
                      |-         +++..+.|++| .+...+.+|++|+..++.+.+++.+|+.|+|.|.++++|+++|||..+++|++    
T Consensus      1160 hl---------~~~w~l~r~fs-Ve~t~sltp~~e~llf~~~~~~~dkN~~knw~r~q~~gfl~a~dp~t~~~pe~---- 1225 (1477)
T KOG0839|consen 1160 HL---------ASNWPLVRHFS-VELTISLTPTFEALLFDHTLRNIDKNLYKNWKRTQIFGFLRAGDPNTWDLPED---- 1225 (1477)
T ss_pred             HH---------HhhhhHhhcCc-HHHHhhhhHHHHHHHHHHHHhhhccChhhhHHHHHHhhhHhhcCCcccCCccc----
Confidence            93         33333444555 44555677899999999999999999999999999999999999999999998    


Q ss_pred             cCCCCccccccchhHHHHHHHHHhHHHHHhHhhhcch-hhhcccccccCCCCCcccccc-cccccccccCCCCCCccccc
Q 000208         1571 RDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDV-VTIKNESLKIGEDPDCAETLS-DLDKEESFSQLPKDSLLDFQ 1648 (1857)
Q Consensus      1571 ~p~~s~~E~iP~~~~e~v~~FL~d~~~dLr~~~~kd~-~~~kne~~~i~~~~~~~~~~~-d~~~e~s~~~~~~~~~~~~Q 1648 (1857)
                            ||++|  ++..+..+.+|+++++|-.+.... -+.+ .+.+.+.|+...+... +...+.....+-..++.+.|
T Consensus      1226 ------fe~~P--l~gnVl~e~ndid~~~rs~~v~ne~dQe~-LS~ps~~derk~~lsk~~~~~~s~~nad~~~Ets~~q 1296 (1477)
T KOG0839|consen 1226 ------FELTP--LFGNVLKEVNDIDCPYRSESVFNEYDQEK-LSVPSGTDERKLWLSKRDTNTESVNNADISCETSPLQ 1296 (1477)
T ss_pred             ------eeeee--ccccHHHHHHhccchhhhHHHHhhhhHHH-hcCCcccccccccccccccccccchhhcccCccccch
Confidence                  47777  777888999999988887652111 0000 0112333222222211 11111112223356788899


Q ss_pred             ccccCCCCCCCCCCCCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHH
Q 000208         1649 KKITLPKHENQDNSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCE 1728 (1857)
Q Consensus      1649 KKi~p~~~~~~~~d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAe 1728 (1857)
                      +|+.||.....+.                            .+.+....+++..++..+|||++.|++|+|+|+|+|||+
T Consensus      1297 fk~~pwnt~Vsdl----------------------------d~~ks~~v~rL~~grssLIVVASLVDKppNLgGicRTcE 1348 (1477)
T KOG0839|consen 1297 FKSGPWNTRVSDL----------------------------DNKKSNDVARLGVGRSSLIVVASLVDKPPNLGGICRTCE 1348 (1477)
T ss_pred             hhcccccchHHHH----------------------------HHHHHhHHHHhccCceeEEEEeecccCCCccchhhhhhh
Confidence            9999998643220                            111222234566778899999999999999999999999


Q ss_pred             HhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEE
Q 000208         1729 VFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVL 1808 (1857)
Q Consensus      1729 AFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVL 1808 (1857)
                      .|||+-+++.+-.+.++|+++..||+|+.|+|+.+|+.+++..||+++|++||+|+|+|||..++.++++.||+|.++|+
T Consensus      1349 VFgvs~LvVad~~vi~DkQFk~lSVtAE~W~pieeVk~~~L~~fLq~kK~EGyTiIglEQTakSV~Ld~fqFPkKslilL 1428 (1477)
T KOG0839|consen 1349 VFGVSLLVVADIKVINDKQFKNLSVTAERWMPIEEVKLDELASFLQEKKKEGYTIIGLEQTAKSVKLDNFQFPKKSLILL 1428 (1477)
T ss_pred             hhCcceEEEeeeeeecchhhhheeeeHHhccchhccChHHHHHHHHHhhhcCcEEEeehhcccccccccccCCcceeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208         1809 GREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus      1809 GNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
                      |+|+.|||.++++..|.||+|||.|.+|||||+|++|+++|||+||+++
T Consensus      1429 G~EkEGIPvnLl~~LD~cvEIpQ~GviRSLNVHVsgAl~iweYTrQqrl 1477 (1477)
T KOG0839|consen 1429 GTEKEGIPVNLLSELDLCVEIPQFGVIRSLNVHVSGALIIWEYTRQQRL 1477 (1477)
T ss_pred             cccccCCcHHHHHHHhHheeccccceeeeeeeehhHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999985

>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3	Back alignment and domain information

>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional	Back alignment and domain information

>PRK10864 putative methyltransferase; Provisional	Back alignment and domain information

>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional	Back alignment and domain information

>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2	Back alignment and domain information

>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]	Back alignment and domain information

>PRK10358 putative rRNA methylase; Provisional	Back alignment and domain information

>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1	Back alignment and domain information

>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	Back alignment and domain information

>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10433 putative RNA methyltransferase; Provisional	Back alignment and domain information

>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]	Back alignment and domain information

>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK03958 tRNA 2'-O-methylase; Reviewed	Back alignment and domain information

>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function	Back alignment and domain information

>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]	Back alignment and domain information

>COG1303 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>PRK12703 tRNA 2'-O-methylase; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1857
2ha8_A		184	Methyltransferase Domain Of Human Tar (Hiv-1) Rna B		2e-47
1zjr_A		211	Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODI		2e-11
1v2x_A		194	Trmh Length = 194		4e-08
3gyq_A		272	Structure Of The Thiostrepton-Resistance Methyltran		4e-04

>pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 Length = 184

Back alignment and structure

Iteration: 1

Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 87/160 (54%), Positives = 121/160 (75%), Gaps = 5/160 (3%) Query: 1701 RASR-----QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTA 1755 RA+R + ++VASLID+ NL GL RTCEVF AS L + + DKQFQ +SV+A Sbjct: 16 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSA 75 Query: 1756 EKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGI 1815 E+W+P+VEV + +L++KK EG++++G+EQTA S+ L QY FP+K++L+LG E+EGI Sbjct: 76 EQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGI 135 Query: 1816 PVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855 P ++I LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ Sbjct: 136 PANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 175

PyMOL of 2ha8

>pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING ENZYME Length = 211

Back alignment and structure

>pdb|1V2X|A Chain A, Trmh Length = 194

Back alignment and structure

>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex Length = 272

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1857
2ha8_A		184	TAR (HIV-1) RNA loop binding protein; methyltransf	2e-57
1zjr_A		211	TRNA (guanosine-2'-O-)-methyltransferase; methylas	4e-24
1v2x_A		194	TRNA (GM18) methyltransferase; DEEP trefoil knot,	9e-22
1ipa_A		274	RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref	3e-16
1x7o_A		287	Avirb, rRNA methyltransferase; SPOU, C-terminal kn	1e-13
3nk6_A		277	23S rRNA methyltransferase; nosiheptide, nosihepti	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1gz0_A		253	Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O	1e-12
2i6d_A		257	RNA methyltransferase, TRMH family; stuctural geno	7e-10
3e5y_A		160	TRMH family RNA methyltransferase; ssgcid, protein	1e-08
3n4j_A		165	RNA methyltransferase; center for structural genom	2e-07
3l8u_A		182	SMU.1707C, putative rRNA methylase; methyltransfer	4e-07

>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Length = 184	Back alignment and structure

 Score =  195 bits (499), Expect = 2e-57
 Identities = 85/160 (53%), Positives = 119/160 (74%)

Query: 1698 ETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEK 1757
              +  S  + ++VASLID+  NL GL RTCEVF AS L +     + DKQFQ +SV+AE+
Sbjct: 18   ARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQ 77

Query: 1758 WVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPV 1817
            W+P+VEV    +  +L++KK EG++++G+EQTA S+ L QY FP+K++L+LG E+EGIP 
Sbjct: 78   WLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPA 137

Query: 1818 DIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857
            ++I  LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ  
Sbjct: 138  NLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLL 177

PyMOL of 2ha8

>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Length = 211	Back alignment and structure

>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194	Back alignment and structure

>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274	Back alignment and structure

>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Length = 287	Back alignment and structure

>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Length = 277	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Length = 253	Back alignment and structure

>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Length = 257	Back alignment and structure

>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} Length = 160	Back alignment and structure

>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A* Length = 165	Back alignment and structure

>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} Length = 182	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1857
1gz0_A		253	Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O	100.0
3nk6_A		277	23S rRNA methyltransferase; nosiheptide, nosihepti	100.0
1ipa_A		274	RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref	100.0
1x7o_A		287	Avirb, rRNA methyltransferase; SPOU, C-terminal kn	100.0
2ha8_A		184	TAR (HIV-1) RNA loop binding protein; methyltransf	100.0
2i6d_A		257	RNA methyltransferase, TRMH family; stuctural geno	100.0
3e5y_A		160	TRMH family RNA methyltransferase; ssgcid, protein	100.0
3n4j_A		165	RNA methyltransferase; center for structural genom	100.0
1v2x_A		194	TRNA (GM18) methyltransferase; DEEP trefoil knot,	99.98
1zjr_A		211	TRNA (guanosine-2'-O-)-methyltransferase; methylas	99.97
3l8u_A		182	SMU.1707C, putative rRNA methylase; methyltransfer	99.97
3kty_A		173	Probable methyltransferase; alpha-beta-alpha sandw	99.96
3ilk_A		244	Uncharacterized tRNA/RRNA methyltransferase HI038;	99.93
3onp_A		249	TRNA/RRNA methyltransferase (SPOU); structural gen	99.93
3ic6_A		223	Putative methylase family protein; putative methyl	99.93
3dcm_X		192	AdoMet, uncharacterized protein TM_1570; trefoil k	99.4
2o3a_A		178	UPF0106 protein AF_0751; structural genomics, unkn	91.7
2yy8_A		201	ATRM56, UPF0106 protein PH0461; DEEP trefoil knot,	90.5

>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3	Back alignment and structure

Probab=100.00  E-value=2.6e-35  Score=328.05  Aligned_cols=190  Identities=22%  Similarity=0.288  Sum_probs=167.2

Q ss_pred             CCccccCHHHHHHHhcccCccchhhhhchhhh---hhHHHHhh-ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEec
Q 000208         1663 SSSFFGNREAYKQLLEIEKEDELFDQVLQARS---LAMETIRA-SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIA 1738 (1857)
Q Consensus      1663 ~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~---~sLe~l~~-~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~ 1738 (1857)
                      .+.+..+++.+++++++.+|||++|.+.+++.   ..+..+.. ...+++||||+++||+|+|+|+|||++||+++|+++
T Consensus        58 i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~  137 (253)
T 1gz0_A           58 VVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVP  137 (253)
T ss_dssp             CEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCcHHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEe
Confidence            45666788999999999999999998865443   34444432 235799999999999999999999999999999998


Q ss_pred             CCC--CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCC
Q 000208         1739 DAN--ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIP 1816 (1857)
Q Consensus      1739 ~~~--~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS 1816 (1857)
                      +++  +++++ +.|+|+||.+|+|+.++  .++.++++.+++.|++++|++. .++.+++++++++|++||||||++|||
T Consensus       138 ~~~~~~~~~~-~~ras~Ga~~~l~~~~~--~~~~~~l~~l~~~g~~i~~~~~-~~~~~~~~~~~~~~~alv~G~E~~Gls  213 (253)
T 1gz0_A          138 KDRSAQLNAT-AKKVACGAAESVPLIRV--TNLARTMRMLQEENIWIVGTAG-EADHTLYQSKMTGRLALVMGAEGEGMR  213 (253)
T ss_dssp             SSSSCCCCHH-HHHHHTTHHHHSCEEEE--SCHHHHHHHHHHTTCEEEEECT-TCSEEGGGSCCCSSEEEEEEBTTTBSC
T ss_pred             CCCCCCCCHH-HHhhhcchheEEEEEEe--CCHHHHHHHHHHCCCEEEEEEC-CCCcchhhccCCCCEEEEECCCCcCcC
Confidence            876  45554 55689999999999986  7999999999999999999985 467789999999999999999999999


Q ss_pred             HHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208         1817 VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus      1817 ~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
                      +++++.||.+|+|||.|.++|||||+|+||+|||+.||++
T Consensus       214 ~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~  253 (253)
T 1gz0_A          214 RLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS  253 (253)
T ss_dssp             HHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCEEEEECCCCCCCceeHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999974

PyMOL of 1gz0

>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*	Back alignment and structure

>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3	Back alignment and structure

>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*	Back alignment and structure

>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}	Back alignment and structure

>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}	Back alignment and structure

>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0	Back alignment and structure

>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*	Back alignment and structure

>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1	Back alignment and structure

>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}	Back alignment and structure

>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0	Back alignment and structure

>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}	Back alignment and structure

>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}	Back alignment and structure

>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}	Back alignment and structure

>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}	Back alignment and structure

>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}	Back alignment and structure

>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8	Back alignment and structure

>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1857
d1gz0a1		166	c.116.1.1 (A:78-243) RlmB, C-terminal domain {Esch	2e-17
d1v2xa_		191	c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH	9e-16
d1ipaa1		158	c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal doma	1e-15
d1mxia_		156	c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransf	2e-15

>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 79.5 bits (195), Expect = 2e-17
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 1698 ETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAE- 1756
            + I +  Q F+L+   +    NL    R+ +      + +                    
Sbjct: 10   DLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAA 69

Query: 1757 KWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIP 1816
            + VP++ V   ++   +   + E   ++G         L Q     +  LV+G E EG+ 
Sbjct: 70   ESVPLIRVT--NLARTMRMLQEENIWIVG-TAGEADHTLYQSKMTGRLALVMGAEGEGMR 126

Query: 1817 VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
                   D  I IP  G V SLNV V+  I L+E  RQ+
Sbjct: 127  RLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 165

PyMOL of d1gz0a1

>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Length = 191	Back information, alignment and structure

>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 158	Back information, alignment and structure

>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Length = 156	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1857
d1gz0a1		166	RlmB, C-terminal domain {Escherichia coli [TaxId:	100.0
d1ipaa1		158	RrmA (RrmH), C-terminal domain {Thermus thermophil	99.98
d1v2xa_		191	tRNA (Gm18) methyltransferase TrmH {Thermus thermo	99.97
d1mxia_		156	Hypothetical tRNA/rRNA methyltransfease HI0766 (Yi	99.94
d2o3aa1		167	Uncharacterized protein AF0751 {Archaeoglobus fulg	82.85

>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-33  Score=287.81  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=142.4

Q ss_pred             hhHHHHh-hccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHH
Q 000208         1695 LAMETIR-ASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHF 1772 (1857)
Q Consensus      1695 ~sLe~l~-~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~ 1772 (1857)
                      ..++++. +...+++||||+++||+|+|+|+|||++||+++|++++++ ....+.+.++|+|+.+|+|+..+  +++.++
T Consensus         6 ~~l~~~~~~~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~~~--~~~~~~   83 (166)
T d1gz0a1           6 NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRV--TNLART   83 (166)
T ss_dssp             GGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEE--SCHHHH
T ss_pred             ccHHHHHhccCCCEEEEEeCCCCcchHHHHHHHHHhcCCceeeeecccccccchhhheeccCcceEeceeec--CCHHHH
Confidence            3455544 3356799999999999999999999999999999998765 34455666799999999999986  799999


Q ss_pred             HHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 000208         1773 LERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYT 1852 (1857)
Q Consensus      1773 Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYElt 1852 (1857)
                      ++.+++.||.+++++.. ...++.++++++|++||||+|++|||+++++.||.+|+|||.|.++|||||+|+||+|||+.
T Consensus        84 l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvs~A~~I~lye~~  162 (166)
T d1gz0a1          84 MRMLQEENIWIVGTAGE-ADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV  162 (166)
T ss_dssp             HHHHHHTTCEEEEECTT-CSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhccccccccccccc-ccccHHHhhccCCeEEEeccCcCCCCHHHHHhCCEEEEEcCcCCCCceeHHHHHHHHHHHHH
Confidence            99999999999999864 56788999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhcc
Q 000208         1853 RQQR 1856 (1857)
Q Consensus      1853 RQrr 1856 (1857)
                      |||.
T Consensus       163 rqr~  166 (166)
T d1gz0a1         163 RQRS  166 (166)
T ss_dssp             HHTC
T ss_pred             HccC
Confidence            9983

PyMOL of d1gz0a1

>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure