Citrus Sinensis ID: 000210

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850----

MSVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERAEADNNGGCSISAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFPAHAPFPSSSRLLGARDIPRPRREIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQGKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDSSWEFLLNSDFHKNYCKFNFIAGISGTKPAVLVPNSSRKEVDGSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTVPSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAIQTSVSPSATDQDLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSNGLQNHFSNYLTSGKWPDDESQGDKNSILLSWYLKWFRVPPPSVIKTAAEKIKPKLVSSSLVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLYN

cccccEEEEEcccccccccHHHHcccccccccccccccccccHHHHcccccccccccccccccccccccEEEEEccEEEEEcccEEEEEEEcccccEEEEEEEccccccEEEEEEEccEEEEEEccccEEEEEcccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEcccccccccccccccEEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEccccccccccEEEEEcccccccEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccEEEcccccccccccccEEEEEcccccEEEEEcccEEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHcccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccEEEEEEccccccEEEEccccccccccccHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHcEEEcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEEEEEcccccccccEEEEcccccccccccEEEEEccccEEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccHHHHHHHHHccccccccEEEEcccccEEEEccccccccccccccccccccccEEEEccc

cccccEEEEEccccccccHHEEEccccccccccccccEEEccHHHHHccccccccccccccccccccccEEEEEccEEEEccccEEEEEEEcccHHEEEEEEccccccHHEEEEEEccEEEEEEcccEEEEEEccccEcccccccHHHHHHHHccccccccccccccccccccccccccHccccccccccccccccccccccccccccHHHEccccccccccEEEEcccEEEEEEcccEEEEEEcccccEEEEEcccccEEEEEEEEccccccHccccccccccccccccHHHHHHHHHccccccccccEEEEEEccccccEEEEEEccccEEEEEEEEEEccccEEEEEcccccEEEEEcHccccccccccEEEEEcEccccEEEEcccccEEEEcccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccHHcccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHccccccccccccHHHHccccccccHHHHHHHHHHHHcccccHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHcHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccHHHEEEcccccccccccccccEEEEEEEcccccEEEEccccccccHHHccHHHHHHHHHHHcEEcccccccccEEEEEcccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccEHHHHHHHHHHHHcccccHHHHHHHHEEccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccEccccccccccccccEEccccEEEccccHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEEEcccccccEEEEEEcccccccHHHccEEEEccccccEEEEEccccccHHHHHHcccccccccEEEEEEccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHccccHHEEEEHHccHHEEHHcc

msvgvrrlsvlgefkpfgliaealdgkppdnladkydyflfdpkFVREraeadnnggcsisapsncsdhelfirGNRIIWTTGarvfkrftlpsqVITVCWCHIGDISEALLCVLQIESLtiyntsgevisiplprtitsiwplpfGLLLQSiegnfpahapfpsssrllgardiprprreighspqnnyslpssfnhnikgetvsMSSHLILSdlleepqctyieergklnimrdfdertiwtsdqiplmasynkgkmQHSVWVAEVVNCIPevasaslsdvvpagvlpkqfLFRRIwqgkgaqtsaskvflatdddaAPIICLLLQEQKKLLALRLQSVEINNEIlfdikpdmswsipavaaapvivtrprvkvgllqYTDIVVLAPDNALLLYSGkqclcrymlpsslrkgnlsrslefseaasvshdlKIIGLADAVEGRINVMVNTGQIFrcelrqnpsssltNDCITAMAEGLSSNFYNYFLVLLWgdnnstylseassdvdsEWNSFCSIIMqmgqkpsliskqhlnsapdsswefllnsdfhknyckfnfiagisgtkpavlvpnssrkevdgslilndsfYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLgeeyyldhyirdfpclskkfgmsmdsvsqknppsLFKWLENCLEYGynyanvndlpplirkdessvVSWARKVVSFYSLLLgakpigkklpsgvfcniapgsfcsneELTVLAMVGenfglqqldllpcgvslplrhaldkcrespptdwpaAAYILLGREDlassclantckskeletqtnvnlismstpymlhlhpvtvpsivsdtsgldstkfedtdsvdgsmtdgMEHIFASGtqlrygrdlrLNEVRRVLCSArpvaiqtsvspsatdqDLQQAQLWHLAQRttalplgrgaFTLATINTLLTEaftvpklvlagrlpaqqnatvnldpnirniqelkswPEFHNAVAAglrlspiqgkmsrtwimynkpeepnitHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAAsyrgtmqpviskslyvhiparhpssvelevptILQSAALMSVGllyegsahpqTMQILLGEigrrsggdnvlereghaVSAGFALGLVALgrgedalgFTDTLVGRLFHyiggkevhnershflslsadennrcagqmmdgtmvnvdvtaPGAIIALSLMFLKTESEAIVSrlsipnthfdlqyvrpdFIMLRVIARNLIMWsrvypsddwiqsqiPEIVKSNVEalrddtsdvdemDAETFVQAYVNIVAGACISLglrfagtknaNVQELLYGYAVYFLNEikpvfatrgnafpkglsryvdrctLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLrgrnsadghaSYGIQMAVSLAIGFLFlgggmrtfstnnNSIAALFISlyprlpsgpndnrchlQAFRHLYVLATEARWIqtvdvdtglpvyapfevtvretehysetsycevtpcilperAILKRVCvcgprywpqvielvpedkpwwsygdkndpfnsgVLYIKRKigacsyvddpvgcqSLLSRAMHKvfsltsdpstndksglgsvAVDQLVstfssdpsLIAFAQLccdpswnsrsdgdfQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLsgklttskggivqskFMGSVRKRVEELLNCSNglqnhfsnyltsgkwpddesqgdknsILLSWYLkwfrvpppsviKTAAEkikpklvssslVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLYN

msvgvrrlsvlgefkpfgliaealdgkppdNLADKYDYFLFDPKFVRERAEADnnggcsisapsncSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFPAHAPFPSSSRLLGARDIPRPRREIghspqnnyslpsSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEErgklnimrdFDERTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVAsaslsdvvpaGVLPKQFLFRRIWQGKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRSLEFSeaasvshdlKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDSSWEFLLNSDFHKNYCKFNFIAGISGTKPAVLVPNSSRKEVDGSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHAldkcrespptDWPAAAYILLGREDLASSCLANtckskeletqtNVNLISMSTPYMLHLHPVTVPSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFasgtqlrygrdLRLNEVRRVLCSARPVAIQTSVSPSATDQDLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAqqnatvnldpNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEhysetsycevtpcilpERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTsdpstndksGLGSVAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLSgklttskggivqskFMGSVRKRVEELLNCSNGLQNHFSNYLTSGKWPDDESQGDKNSILLSWYLKWFRVPPPSVIKTAAekikpklvssslVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVaslavgnfrtymlyn

MSVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERAEADNNGGCSISAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFPAHAPFPSSSRLLGARDIPRPRREIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQGKGAQTSASKVFLATDDDAAPIIClllqeqkkllalrlqSVEINNEILFDIKPDMSWSipavaaapvivtrprvKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDSSWEFLLNSDFHKNYCKFNFIAGISGTKPAVLVPNSSRKEVDGSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTVPSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAIQTSVSPSATDQDLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNIThaglllalglhghlralTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEIClhlvvlslsvvMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSNGLQNHFSNYLTSGKWPDDESQGDKNSILLSWYLKWFRVPPPSVIKTAAEKIKPKLVSSSLVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLYN

******RLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERA*****GGCSISAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFP**************************************************SHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQGKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKG*****LEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMG*****************SWEFLLNSDFHKNYCKFNFIAGISGTKPAVLVPNSSRKEVDGSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGM***********SLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTVPSIV****************************FASGTQLRYGRDLRLNEVRRVLCSARPVAIQT**********LQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALR*****VDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSL**************VAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSNGLQNHFSNYLTSGKW*********NSILLSWYLKWFRVPPPSVIKTAAEKIKPKLVSSSLVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLY*

*****RR*SVLGEFKPFGLIAE***********DKYDYFLFDPKFV***************APSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLL***********************************************************HLILSDLLEEPQ***********************SDQIPLMASYNKGKMQ*******************************QFLFR*IW******TSASKVFLATDDDAAPIICLLLQEQKKLLALRL*****************SWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSS************************IGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQ************************LNSDFHKNYCKF******************************DSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKK*********QKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKL***************NEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSC************************************************************DGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAIQ**********DLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPS**ELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEI**********EREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKE***********************MDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKS*****************ETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFA*R**AFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDD***C********************************QLVSTFSSDPSLIAFAQLCCDPSW**RSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSM*************SLNISNLKLALAYIDAQ************VQSKFMGSVRKRVEELLNCSNGLQNHFSNYLTSGK********DKNSILLSWYLKWFRVPPPSVI**************SLVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLYN

MSVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERAEADNNGGCSISAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFPAHAPFPSSSRLLGARDIPRPRREIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQGKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYL********SEWNSFCSIIMQMGQKPSLISKQHLNSAPDSSWEFLLNSDFHKNYCKFNFIAGISGTKPAVLVPNSSRKEVDGSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTVPSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAIQTSVSPSATDQDLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRE********YCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSNGLQNHFSNYLTSGKWPDDESQGDKNSILLSWYLKWFRVPPPSVIKTAAEKIKPKLVSSSLVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLYN

*SVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRER****************CSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGN**************GARDIPRPR**I***PQ***SLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQGKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKP************DSSWEFLLNSDFHKNYCKFNFIAGISGTKPAVLVPNS*RKEVDGSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANT**************ISMSTP**L*L******************************TDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAIQTSVSPSATDQDLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLKLALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSNGLQNHFSNYLTSGKWPDDESQGDKNSILLSWYLKWFRVPPPSVIKTAAEKIKPKLVSSSLVPFLRLFAKAKEAMTDISTVTLHGMGAFCFKLANFQRLQAEPARVASLAVGNFRTYMLYN

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1854	2.2.26 [Sep-21-2011]
Q9FFF9		1678	Anaphase-promoting comple	yes	no	0.889	0.983	0.594	0.0
Q9H1A4		1944	Anaphase-promoting comple	yes	no	0.763	0.727	0.303	0.0
P53995		1944	Anaphase-promoting comple	yes	no	0.740	0.705	0.309	0.0
Q54NC6		2269	Anaphase-promoting comple	yes	no	0.476	0.389	0.313	1e-139
P24686		2067	Negative regulator of mit	yes	no	0.394	0.353	0.330	1e-110
Q9URV2		1458	Anaphase-promoting comple	yes	no	0.472	0.600	0.292	1e-101
P53886		1748	Anaphase-promoting comple	yes	no	0.392	0.416	0.244	1e-35

>sp\|Q9FFF9\|APC1_ARATH Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1	Back alignment and function desciption

 Score = 2031 bits (5263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1076/1809 (59%), Positives = 1295/1809 (71%), Gaps = 159/1809 (8%)

Query: 1    MSVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERAEADNNGGCSI 60
            M  GVR+L+VLG+FKPFGLIAEA DGK PD   D Y YFLFDP+   ER +AD N     
Sbjct: 1    MPPGVRQLTVLGKFKPFGLIAEATDGKSPD---DSYQYFLFDPELTGERDDADGND---- 53

Query: 61   SAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESL 120
            +  S   +HELFIR N  +    A V   F         CW ++G  +EA LCVLQI  L
Sbjct: 54   ANFSRQREHELFIRDNCNVRKGYALVEANFI--GYWYNACWSNLGRGTEAFLCVLQIACL 111

Query: 121  TIYNTSGEVISIPLPRTITSIWPLPFGLLL-QSIEGNFPAHAPFPSSSRLLGARDIPRPR 179
            TIYNTSGEV+S+PL RT+ SIWPLP GLLL Q+ E N P+H PF   S +LG+R++ R R
Sbjct: 112  TIYNTSGEVVSVPLMRTVKSIWPLPCGLLLEQAGEVNPPSHVPFSPVSPILGSREMLRQR 171

Query: 180  REIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDE 239
            +E+G+S   N+  P + +   K +   MSSHLIL D LEEP  TY+EERGKL IM+D+DE
Sbjct: 172  KEVGNSSPQNFHSPVAHDLISKRDMPCMSSHLILRDPLEEPGPTYVEERGKLTIMKDYDE 231

Query: 240  RTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIW 299
            RTIWTSD++PLM SYNKGKMQHSVW AE +    E +++  S +VP  VL K+  FRRIW
Sbjct: 232  RTIWTSDRLPLMTSYNKGKMQHSVWAAEFIESNLEASASCSSGIVPDAVLSKRVSFRRIW 291

Query: 300  QGKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSI 359
            Q KGA+ +ASKVFLATD+ + P+IC L+ EQKKLL++ LQ+VEINNEILFD+KPD+SWS+
Sbjct: 292  QAKGAKKAASKVFLATDN-SVPVICFLILEQKKLLSVGLQTVEINNEILFDVKPDISWSV 350

Query: 360  PAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRS 419
             A+AAAPV+VTR +VK+GLL + DI+VL+P+N L LYSGKQCLCRY+LPS L +   S  
Sbjct: 351  SAIAAAPVVVTRSQVKIGLLPHLDIIVLSPENDLFLYSGKQCLCRYVLPSWLGESIGSGD 410

Query: 420  LEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGL 479
             E ++  S   +LKI GL+DAV G IN+ VN  QIFRC L   PSSSL NDCI A+AEGL
Sbjct: 411  GESAKTDSGFRNLKITGLSDAVLGSINLSVNHSQIFRCALTGKPSSSLANDCIAAIAEGL 470

Query: 480  SSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDS 539
             S+ Y+ FL LLWGD +S       S +  EW + C+I +++ QKP+++ ++   +A +S
Sbjct: 471  RSDLYSLFLSLLWGDGHSDL---QGSSIHFEWEALCNIFLEICQKPTVVHRKQPKTASES 527

Query: 540  SWEFLLNSDFHKNYCKF-NFIAGISGTKPAVLVPNSSR---KEVDGSLILNDSFYSELFM 595
            SWEFLL S FHK Y +F N I  I+      +VP  S+   +E  GS         EL +
Sbjct: 528  SWEFLLISKFHKTYSRFHNGITSINRLDLEGIVPFDSKICSEETLGS-------SCELMV 580

Query: 596  VSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMS 655
             SLD LH++YESLK+D LRK+DL  LAVLLCN+AKFL E+ YLD+YIRDFP LS   G  
Sbjct: 581  QSLDCLHAVYESLKMDNLRKQDLHHLAVLLCNIAKFLDEKCYLDYYIRDFPRLSTTIGAC 640

Query: 656  MDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGA 715
                S + PP+LF+WLENCL  G    N +DLP LIR+D  S+VSWARKVVSFYS+L G 
Sbjct: 641  TTLSSSRKPPNLFRWLENCLRRGCLSTNFDDLPDLIRRDGCSIVSWARKVVSFYSVLFGD 700

Query: 716  KPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCR 775
            KP G+ L SGV CNIAPGS+  NEELT+LAM GE FGL QLDLLP GVSLPLRHALD CR
Sbjct: 701  KPEGRTLSSGVPCNIAPGSYSCNEELTILAMAGERFGLHQLDLLPSGVSLPLRHALDSCR 760

Query: 776  ESPPTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTVPS 835
            ESPP DWPA AY+LLGRED+A S   N   SKE E Q+N +LISMS PYMLHLHPV VPS
Sbjct: 761  ESPPADWPAIAYVLLGREDMALSVFRNFSSSKEFEMQSNTSLISMSIPYMLHLHPVIVPS 820

Query: 836  IVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAI 895
              S++ GL++TK EDT+SVDGS+ DGMEHIF S TQLRYGRDLRLNEVRR+LCSARPV +
Sbjct: 821  --SESIGLENTKIEDTNSVDGSVIDGMEHIFNSYTQLRYGRDLRLNEVRRLLCSARPVVV 878

Query: 896  QTSVSPSATDQDLQQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLP 955
            QT+ +P+ +DQ+ QQ                               AFTVPKLVLAGRLP
Sbjct: 879  QTAANPTISDQEQQQ-------------------------------AFTVPKLVLAGRLP 907

Query: 956  AQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHA 1015
            +QQNA VNLDPNIRNIQELK+WPEFHNAVAAGLRL+P+QGK+SRTWI YNKP EPN  HA
Sbjct: 908  SQQNAIVNLDPNIRNIQELKTWPEFHNAVAAGLRLAPLQGKVSRTWIRYNKPGEPNAVHA 967

Query: 1016 GLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIP 1075
            GLL  LGL G+L  L +SDIY+YF Q+HEST VGLMLGLAASYRGTMQP I+K+L+ H+P
Sbjct: 968  GLLFGLGLQGYLHVLNLSDIYQYFTQDHESTTVGLMLGLAASYRGTMQPDIAKALFFHVP 1027

Query: 1076 ARHPSS-VELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHA 1134
            AR+ +S  E E+PT+LQSAAL+SVG+L+EGSAH QTMQ+LLGEIGRRS GDNVLEREG+A
Sbjct: 1028 ARYQASYTEFEIPTLLQSAALVSVGMLFEGSAHQQTMQLLLGEIGRRSAGDNVLEREGYA 1087

Query: 1135 VSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQM 1194
            VSAGF+LGLVALGRG DALG  D+LV RL  Y+G KE   ERS  + + + E++R A Q+
Sbjct: 1088 VSAGFSLGLVALGRGGDALGSMDSLVNRLLLYLGAKE---ERS--ILVPSLEDHRSAAQI 1142

Query: 1195 MDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARN 1254
             DG+  NVD+TAPGAIIAL+LM+LKTESE I S+LSIP TH+DL+ VRPDFIMLRVIARN
Sbjct: 1143 TDGSTSNVDITAPGAIIALTLMYLKTESEVIFSKLSIPQTHYDLECVRPDFIMLRVIARN 1202

Query: 1255 LIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLG 1314
            LIMWSR+ P+ DWIQSQ+PE+VK+ +  LRDD  ++ E+D E  VQAYVNIVAGACISLG
Sbjct: 1203 LIMWSRICPTCDWIQSQVPEVVKNGISQLRDDMDNMYEVDVEALVQAYVNIVAGACISLG 1262

Query: 1315 LRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLS 1374
            LRFAGT++ N ++LL  YA+Y LNEIKP+ AT GNAFP+G+S++VDR TLE+CL+L+++S
Sbjct: 1263 LRFAGTRDGNARDLLNSYALYLLNEIKPLSATPGNAFPRGISKFVDRGTLEMCLYLIIIS 1322

Query: 1375 LSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNS 1434
            LSVVMAGSG LQ FRLLRFLR RNSADGHA+YG QMAVSLA GFLFLGGGMRTFSTNN S
Sbjct: 1323 LSVVMAGSGDLQVFRLLRFLRSRNSADGHANYGTQMAVSLATGFLFLGGGMRTFSTNNGS 1382

Query: 1435 IAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRE 1494
            +A L I+LYPRLPSGPNDNRCHLQAFRHLYVLATEARW+QT+DVD+GLPVYAP EVTV+E
Sbjct: 1383 LAMLLITLYPRLPSGPNDNRCHLQAFRHLYVLATEARWLQTIDVDSGLPVYAPLEVTVKE 1442

Query: 1495 TEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNSG 1554
            T+ YSET +CE+TPCILPERAILKR+CVCGPRYWPQ IELV                   
Sbjct: 1443 TKLYSETKFCEITPCILPERAILKRICVCGPRYWPQQIELV------------------- 1483

Query: 1555 VLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVAVDQLVSTFSS 1614
              +  R +G  + +                          N    L S +VD LVSTFSS
Sbjct: 1484 --FGLRTLGESNLI-------------------------ANSHRELDSDSVDHLVSTFSS 1516

Query: 1615 DPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQ 1674
            DPSLIAFAQLCCD SWN+  D                         +L L  ++ S V  
Sbjct: 1517 DPSLIAFAQLCCDKSWNNSFD-------------------------FLILDLILWSQV-- 1549

Query: 1675 VINGHVVVGDSLNISNLKLALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSN 1734
                               ALAY +A  +G+L +S GG VQS F+ S+RKR EE+LNCS 
Sbjct: 1550 -------------------ALAYNEAVSTGRLASS-GGFVQSIFLASLRKRCEEVLNCST 1589

Query: 1735 GLQNHFSNYLTSGKWP-DDESQGDKNSILLSWYLKWFRVPPPSVIKTAAEKIKPKLV-SS 1792
             L+ +  NYLTS  WP D  S+  K+ I+LSWYLKWF VP PS+IK A EKIK K   S+
Sbjct: 1590 ELKINLRNYLTSEAWPYDKNSKLQKDIIILSWYLKWFNVPSPSIIKAAVEKIKSKSKNST 1649

Query: 1793 SLVPFLRLF 1801
            S +P LRL 
Sbjct: 1650 SAIPLLRLL 1658

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9H1A4\|APC1_HUMAN Anaphase-promoting complex subunit 1 OS=Homo sapiens GN=ANAPC1 PE=1 SV=1	Back alignment and function description

>sp\|P53995\|APC1_MOUSE Anaphase-promoting complex subunit 1 OS=Mus musculus GN=Anapc1 PE=1 SV=2	Back alignment and function description

>sp\|Q54NC6\|APC1_DICDI Anaphase-promoting complex subunit 1 OS=Dictyostelium discoideum GN=anapc1 PE=3 SV=1	Back alignment and function description

>sp\|P24686\|BIME_EMENI Negative regulator of mitosis OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bimE PE=2 SV=2	Back alignment and function description

>sp\|Q9URV2\|APC1_SCHPO Anaphase-promoting complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut4 PE=1 SV=1	Back alignment and function description

>sp\|P53886\|APC1_YEAST Anaphase-promoting complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APC1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1854
224101161		1929	predicted protein [Populus trichocarpa]	0.966	0.928	0.741	0.0
357492743		1854	Anaphase-promoting complex subunit [Medi	0.949	0.949	0.655	0.0
449516213		1589	PREDICTED: anaphase-promoting complex su	0.839	0.979	0.709	0.0
297736590		1931	unnamed protein product [Vitis vinifera]	0.759	0.729	0.772	0.0
218196613		1799	hypothetical protein OsI_19594 [Oryza sa	0.946	0.975	0.587	0.0
297806569		1748	hypothetical protein ARALYDRAFT_487351 [	0.900	0.954	0.590	0.0
222631245		1799	hypothetical protein OsJ_18189 [Oryza sa	0.940	0.968	0.587	0.0
15239171		1678	anaphase-promoting complex subunit 1 [Ar	0.889	0.983	0.594	0.0
357129403		1788	PREDICTED: anaphase-promoting complex su	0.928	0.963	0.582	0.0
359486497		1716	PREDICTED: anaphase-promoting complex su	0.638	0.689	0.735	0.0

>gi\|224101161\|ref\|XP_002312165.1\| predicted protein [Populus trichocarpa] gi\|222851985\|gb\|EEE89532.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 2708 bits (7020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1376/1856 (74%), Positives = 1540/1856 (82%), Gaps = 64/1856 (3%)

Query: 1    MSVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERAEADNNGGCSI 60
            M+V V  L+VLGEFKPFGLIAEALDGKPPD   D YDYFLFDP+  R+R E D    C  
Sbjct: 1    MAVRVCELTVLGEFKPFGLIAEALDGKPPDTDPDDYDYFLFDPEIARDRNEIDETDTCG- 59

Query: 61   SAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESL 120
            SA  + SDHELFIRGN+IIW+TGARVFKRFTLPS VI  CWCH+GD+SEALLC+L  +SL
Sbjct: 60   SALRDRSDHELFIRGNKIIWSTGARVFKRFTLPSPVIMACWCHLGDLSEALLCILLTDSL 119

Query: 121  TIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFPAHAPFPSSSRLLGARDIPRPRR 180
            TIYN SGEV+SIP+P TITSIWPLPFGLLLQS   N P      S S L G  D+ R +R
Sbjct: 120  TIYNISGEVVSIPIPCTITSIWPLPFGLLLQSASENSPMQNHLSSPSPLFGVCDMSRAKR 179

Query: 181  EIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDER 240
            EI HSP +N+ +  +F+H IKG++  MSSHLIL DLLEEP   ++EERGKL IM+DFDER
Sbjct: 180  EIVHSPHHNFGVLGTFDHVIKGDSAIMSSHLILKDLLEEPHLMHVEERGKLTIMKDFDER 239

Query: 241  TIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQ 300
            TIWTS++IPLMASYNKGKMQHS+WVAE++N   E  +ASLS      VL K F FRRIWQ
Sbjct: 240  TIWTSNRIPLMASYNKGKMQHSLWVAEIINSNFEAENASLSGAALDDVLDKNFSFRRIWQ 299

Query: 301  GKGAQTSASKVFLATDDDAAPIICLLLQEQKKLLALRLQSVEINNEILFDIKPDMSWSIP 360
            GKGAQT+ASKVFLATDDDAAP+IC LLQEQKKLL+++LQS+EINNEI+FDIKPD+SWS+ 
Sbjct: 300  GKGAQTAASKVFLATDDDAAPVICFLLQEQKKLLSVKLQSLEINNEIIFDIKPDVSWSVA 359

Query: 361  AVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRSL 420
            AVAAAPV VT PRVKVGLL YTDIVVLAPDN+LLL SGKQ LC+Y+LPS   KG+LS +L
Sbjct: 360  AVAAAPVSVTHPRVKVGLLPYTDIVVLAPDNSLLLISGKQLLCKYLLPSFFGKGHLSHNL 419

Query: 421  EFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLS 480
            EFSE ASV  D KI+GL DAVEGR+N+++N GQ+FRC LR++PSSSL NDCITAMAEGLS
Sbjct: 420  EFSETASVPLDSKILGLTDAVEGRVNLILNNGQMFRCTLRRSPSSSLVNDCITAMAEGLS 479

Query: 481  SNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHL---NSAP 537
            S FYN+FL LLWGD+NS YLS A S VDSEWNSFC+II+QM +KPS  S++H    N   
Sbjct: 480  SGFYNHFLALLWGDSNSDYLSRADSSVDSEWNSFCNIILQMCRKPSATSQKHSDLENLEQ 539

Query: 538  DSSWEFLLNSDFHKNYCKFNFIAGISGTK----PAVLVPNSSRKEVDGSLILNDSFYSEL 593
             SSWEFL+NS FHKNY K NFI+ +S ++    P  +  +S    ++G+    +SFY EL
Sbjct: 540  HSSWEFLVNSKFHKNYHKLNFISRVSSSELSFDPEKM--DSFGSNMEGNRSSENSFYFEL 597

Query: 594  FMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFG 653
               SLD LH+LYESLKLD LRKRDLEL+AVLLCN+AKFLGE  YLDHYIRDFP L  K G
Sbjct: 598  LQESLDCLHALYESLKLDKLRKRDLELVAVLLCNIAKFLGEGNYLDHYIRDFPGLISKIG 657

Query: 654  MSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLL 713
                  SQK PPSLF+WLENC+++G + AN +DLPPLI KD + VVSWARK+VSFYSLL 
Sbjct: 658  TCEMPFSQKTPPSLFRWLENCMQHGCSSANTDDLPPLICKDGNFVVSWARKIVSFYSLLC 717

Query: 714  GAKPIGKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDK 773
            G K  GKKL SGV+CNIA GS C++EELTVLAMVGE FGLQQLD LP GVSLPLRHALDK
Sbjct: 718  GGKQTGKKLSSGVYCNIAMGSCCTSEELTVLAMVGERFGLQQLDSLPSGVSLPLRHALDK 777

Query: 774  CRESPPTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTV 833
            CRESPPTDW AAAY+LLGREDLA S  A  CKS ELETQ NVNLISMSTPYMLHLHPVT+
Sbjct: 778  CRESPPTDWSAAAYVLLGREDLALSRSALPCKSGELETQPNVNLISMSTPYMLHLHPVTI 837

Query: 834  PSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPV 893
            PS VSDT+GL+S KFED+DS DGSM DGMEHIF S TQL+YGRD RLNEVRR+LCS RPV
Sbjct: 838  PSTVSDTTGLESAKFEDSDSADGSMMDGMEHIFNSSTQLQYGRDQRLNEVRRLLCSTRPV 897

Query: 894  AIQTSVSPSATDQDLQQ---------------AQLWHLAQRTTALPLGRGAFTLATINTL 938
            AIQTSV+PSA+DQD+QQ               AQLWHLAQRTTALPLGRGAFTLATI+TL
Sbjct: 898  AIQTSVNPSASDQDIQQILILLCLLLSLLLVKAQLWHLAQRTTALPLGRGAFTLATISTL 957

Query: 939  LTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWPEFHNAVAAGLRLSPIQGKMS 998
            LTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSW EFHNAVAAGLRL+P+QGK+S
Sbjct: 958  LTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWSEFHNAVAAGLRLAPLQGKVS 1017

Query: 999  RTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASY 1058
            RTWI+YNKPEEPN  HAGLLLALGLHG+LR L ISDIY YF QEHEST VGLMLGLAASY
Sbjct: 1018 RTWIIYNKPEEPNAIHAGLLLALGLHGYLRVLVISDIYTYFTQEHESTTVGLMLGLAASY 1077

Query: 1059 RGTMQPVISKSLYVHIPARHPSSV-ELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGE 1117
            R TM P ISKSLY HIP+RH SS  +LE+PT++QSAAL+S GLLYEGS HP TMQILLGE
Sbjct: 1078 RKTMHPAISKSLYFHIPSRHSSSFPDLELPTLVQSAALVSAGLLYEGSVHPPTMQILLGE 1137

Query: 1118 IGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERS 1177
            IGRRSGGDNVLEREG+AVSAGF+LGLVALGRGEDALGF ++LV RLF YIGGKE+HNER 
Sbjct: 1138 IGRRSGGDNVLEREGYAVSAGFSLGLVALGRGEDALGFLNSLVDRLFQYIGGKEMHNERP 1197

Query: 1178 HFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFD 1237
             FL+ S DE N  AGQMMDGT VNVDVTAPGAIIAL+LMFLKTESEA+VSRLSIP THFD
Sbjct: 1198 LFLTPSMDEQNHGAGQMMDGTAVNVDVTAPGAIIALALMFLKTESEAVVSRLSIPQTHFD 1257

Query: 1238 LQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAET 1297
            LQYVRPDFIMLRVIARNLIMWSRV+PS+DWIQSQIP IVKS V  L D  +D+DEMDAET
Sbjct: 1258 LQYVRPDFIMLRVIARNLIMWSRVHPSNDWIQSQIPNIVKSGVNGLEDHVNDMDEMDAET 1317

Query: 1298 FVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSR 1357
            FVQAYVNIVAGACISLGLRFAGTK+ N QELLY YAVYFLNEIK V AT GNAFPKGLSR
Sbjct: 1318 FVQAYVNIVAGACISLGLRFAGTKDGNAQELLYEYAVYFLNEIKHVCATSGNAFPKGLSR 1377

Query: 1358 YVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIG 1417
            YVDR TLEICLHL+VLSLSVVMAGSGHLQTFRLLRFLR RNSADGHA+YG QMAVSLAIG
Sbjct: 1378 YVDRGTLEICLHLIVLSLSVVMAGSGHLQTFRLLRFLRSRNSADGHANYGTQMAVSLAIG 1437

Query: 1418 FLFLGGGMRTFSTNNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVD 1477
            FLFLGGGMRTFST+N+SIAAL I+LYPRLP+ PNDNRCHLQAFRHLYVLATEAR +QTVD
Sbjct: 1438 FLFLGGGMRTFSTSNSSIAALLITLYPRLPTVPNDNRCHLQAFRHLYVLATEARLLQTVD 1497

Query: 1478 VDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPE 1537
            VD+GLPVYAP EVTVRETEHYSETS+CEVTPCILPERAILK V VCGPRYWPQV+ELVPE
Sbjct: 1498 VDSGLPVYAPVEVTVRETEHYSETSFCEVTPCILPERAILKSVRVCGPRYWPQVMELVPE 1557

Query: 1538 DKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTS----DPS 1593
            DKPWWS G+ NDPFNSGV+YIKRK+GACSYVDDP+GCQSLLSRAMHKVF LT+    DPS
Sbjct: 1558 DKPWWSIGETNDPFNSGVIYIKRKVGACSYVDDPIGCQSLLSRAMHKVFGLTNIKVGDPS 1617

Query: 1594 TNDKSGLGSVAVDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKD 1653
            T+D SG GSV VDQLVS FSSDPSLIAFAQLCCDPSWN +SD +FQEFCLQVLFECISKD
Sbjct: 1618 TSDHSGPGSVTVDQLVSAFSSDPSLIAFAQLCCDPSWNCKSDVEFQEFCLQVLFECISKD 1677

Query: 1654 RPALLQVYLSLHTMIGSMVDQVINGHVVVGDSLNISNLK--------------------- 1692
            RPALLQVYLSL+T IGSM DQV NG  ++GDSL +S+LK                     
Sbjct: 1678 RPALLQVYLSLYTTIGSMTDQVTNGTFILGDSLALSSLKHTECGCHLGHGAKADQCLGLV 1737

Query: 1693 -------------LALAYIDAQLSGKLTTSKGGIVQSKFMGSVRKRVEELLNCSNGLQNH 1739
                         LAL Y +A LSG+LTT +G I+QS F+GS++KRVEELL+CS GL+  
Sbjct: 1738 SFMLELHDNHHKLLALTYNEALLSGRLTTPRGSIIQSVFLGSLKKRVEELLHCSEGLKID 1797

Query: 1740 FSNYLTSGKWPDDESQGDKNSILLSWYLKWFRVPPPSVIKTAAEKIKPKLVSSSLV 1795
            F NYL  G+WP+D+++G+KNS+LLSWYL+WF VP  S+IKTA E++KPKLVS+S V
Sbjct: 1798 FCNYLNFGRWPNDQTEGEKNSVLLSWYLQWFAVPSSSIIKTAMERVKPKLVSASSV 1853

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357492743\|ref\|XP_003616660.1\| Anaphase-promoting complex subunit [Medicago truncatula] gi\|355517995\|gb\|AES99618.1\| Anaphase-promoting complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449516213\|ref\|XP_004165142.1\| PREDICTED: anaphase-promoting complex subunit 1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297736590\|emb\|CBI25461.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|218196613\|gb\|EEC79040.1\| hypothetical protein OsI_19594 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|297806569\|ref\|XP_002871168.1\| hypothetical protein ARALYDRAFT_487351 [Arabidopsis lyrata subsp. lyrata] gi\|297317005\|gb\|EFH47427.1\| hypothetical protein ARALYDRAFT_487351 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|222631245\|gb\|EEE63377.1\| hypothetical protein OsJ_18189 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi|15239171|ref|NP_196175.1| anaphase-promoting complex subunit 1 [Arabidopsis thaliana] gi|75170223|sp|Q9FFF9.1|APC1_ARATH RecName: Full=Anaphase-promoting complex subunit 1; AltName: Full=Cyclosome subunit 1; AltName: Full=Protein EMBRYO DEFECTIVE 2771 gi|10178133|dbj|BAB11545.1| meiotic check point regulator-like protein [Arabidopsis thaliana] gi|332003506|gb|AED90889.1| anaphase-promoting complex subunit 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357129403\|ref\|XP_003566351.1\| PREDICTED: anaphase-promoting complex subunit 1-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|359486497\|ref\|XP_002272442.2\| PREDICTED: anaphase-promoting complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1854
TAIR\|locus:2169657		1678	EMB2771 "AT5G05560" [Arabidops	0.481	0.531	0.562	0.0
UNIPROTKB\|E1C2U7		1950	ANAPC1 "Uncharacterized protei	0.376	0.357	0.383	3.5e-165
UNIPROTKB\|G3N2V4		1952	ANAPC1 "Uncharacterized protei	0.377	0.358	0.385	5.7e-165
UNIPROTKB\|E1BAB6		1951	ANAPC1 "Uncharacterized protei	0.377	0.358	0.385	9.1e-165
UNIPROTKB\|J9P1H2		1943	ANAPC1 "Uncharacterized protei	0.377	0.359	0.385	3.3e-163
RGD\|1306629		1394	Anapc1 "anaphase promoting com	0.377	0.501	0.385	2.6e-161
UNIPROTKB\|H0Y564		1452	ANAPC1 "Anaphase-promoting com	0.380	0.485	0.384	2.9e-160
MGI\|MGI:103097		1944	Anapc1 "anaphase promoting com	0.377	0.359	0.386	1.4e-159
UNIPROTKB\|Q9H1A4		1944	ANAPC1 "Anaphase-promoting com	0.380	0.362	0.384	2.2e-159
UNIPROTKB\|E2RLM2		1952	ANAPC1 "Uncharacterized protei	0.376	0.357	0.386	1.6e-157

TAIR\|locus:2169657 EMB2771 "AT5G05560" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2485 (879.8 bits), Expect = 0., Sum P(4) = 0.
 Identities = 514/913 (56%), Positives = 628/913 (68%)

Query:     1 MSVGVRRLSVLGEFKPFGLIAEALDGKPPDNLADKYDYFLFDPKFVRERAEADNNGGCSI 60
             M  GVR+L+VLG+FKPFGLIAEA DGK PD   D Y YFLFDP+   ER +AD N     
Sbjct:     1 MPPGVRQLTVLGKFKPFGLIAEATDGKSPD---DSYQYFLFDPELTGERDDADGNDANF- 56

Query:    61 SAPSNCSDHELFIRGNRIIWTTGARVFKRFTLPSQVITVCWCHIGDISEALLCVLQIESL 120
                S   +HELFIR N  +    A V   F         CW ++G  +EA LCVLQI  L
Sbjct:    57 ---SRQREHELFIRDNCNVRKGYALVEANFI--GYWYNACWSNLGRGTEAFLCVLQIACL 111

Query:   121 TIYNTSGEVISIPLPRTITSIWPLPFGLLL-QSIEGNFPAHAPFPSSSRLLGARDIPRPR 179
             TIYNTSGEV+S+PL RT+ SIWPLP GLLL Q+ E N P+H PF   S +LG+R++ R R
Sbjct:   112 TIYNTSGEVVSVPLMRTVKSIWPLPCGLLLEQAGEVNPPSHVPFSPVSPILGSREMLRQR 171

Query:   180 REIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDE 239
             +E+G+S   N+  P + +   K +   MSSHLIL D LEEP  TY+EERGKL IM+D+DE
Sbjct:   172 KEVGNSSPQNFHSPVAHDLISKRDMPCMSSHLILRDPLEEPGPTYVEERGKLTIMKDYDE 231

Query:   240 RTIWTSDQIPLMASYNKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIW 299
             RTIWTSD++PLM SYNKGKMQHSVW AE +    E +++  S +VP  VL K+  FRRIW
Sbjct:   232 RTIWTSDRLPLMTSYNKGKMQHSVWAAEFIESNLEASASCSSGIVPDAVLSKRVSFRRIW 291

Query:   300 QGKGAQTSASKVFLATDDDAAPIICXXXXXXXXXXXXXXXSVEINNEILFDIKPDMSWSX 359
             Q KGA+ +ASKVFLATD+ + P+IC               +VEINNEILFD+KPD+SWS 
Sbjct:   292 QAKGAKKAASKVFLATDN-SVPVICFLILEQKKLLSVGLQTVEINNEILFDVKPDISWSV 350

Query:   360 XXXXXXXXXXXXXXXKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNLSRS 419
                            K+GLL + DI+VL+P+N L LYSGKQCLCRY+LPS L +   S  
Sbjct:   351 SAIAAAPVVVTRSQVKIGLLPHLDIIVLSPENDLFLYSGKQCLCRYVLPSWLGESIGSGD 410

Query:   420 LEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGL 479
              E ++  S   +LKI GL+DAV G IN+ VN  QIFRC L   PSSSL NDCI A+AEGL
Sbjct:   411 GESAKTDSGFRNLKITGLSDAVLGSINLSVNHSQIFRCALTGKPSSSLANDCIAAIAEGL 470

Query:   480 SSNFYNYFLVLLWGDNNSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDS 539
              S+ Y+ FL LLWGD +S       S +  EW + C+I +++ QKP+++ ++   +A +S
Sbjct:   471 RSDLYSLFLSLLWGDGHSDL---QGSSIHFEWEALCNIFLEICQKPTVVHRKQPKTASES 527

Query:   540 SWEFLLNSDFHKNYCKF-NFIAGISGTKPAVLVPNSSRKEVDGSLILNDSFYSELFMVSL 598
             SWEFLL S FHK Y +F N I  I+      +VP  S+  +     L  S   EL + SL
Sbjct:   528 SWEFLLISKFHKTYSRFHNGITSINRLDLEGIVPFDSK--ICSEETLGSS--CELMVQSL 583

Query:   599 DALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSKKFGMSMDS 658
             D LH++YESLK+D LRK+DL  LAVLLCN+AKFL E+ YLD+YIRDFP LS   G     
Sbjct:   584 DCLHAVYESLKMDNLRKQDLHHLAVLLCNIAKFLDEKCYLDYYIRDFPRLSTTIGACTTL 643

Query:   659 VSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPI 718
              S + PP+LF+WLENCL  G    N +DLP LIR+D  S+VSWARKVVSFYS+L G KP 
Sbjct:   644 SSSRKPPNLFRWLENCLRRGCLSTNFDDLPDLIRRDGCSIVSWARKVVSFYSVLFGDKPE 703

Query:   719 GKKLPSGVFCNIAPGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESP 778
             G+ L SGV CNIAPGS+  NEELT+LAM GE FGL QLDLLP GVSLPLRHALD CRESP
Sbjct:   704 GRTLSSGVPCNIAPGSYSCNEELTILAMAGERFGLHQLDLLPSGVSLPLRHALDSCRESP 763

Query:   779 PTDWPAAAYILLGREDLASSCLANTCKSKELETQTNVNLISMSTPYMLHLHPVTVPSIVS 838
             P DWPA AY+LLGRED+A S   N   SKE E Q+N +LISMS PYMLHLHPV VPS  S
Sbjct:   764 PADWPAIAYVLLGREDMALSVFRNFSSSKEFEMQSNTSLISMSIPYMLHLHPVIVPS--S 821

Query:   839 DTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSARPVAIQTS 898
             ++ GL++TK EDT+SVDGS+ DGMEHIF S TQLRYGRDLRLNEVRR+LCSARPV +QT+
Sbjct:   822 ESIGLENTKIEDTNSVDGSVIDGMEHIFNSYTQLRYGRDLRLNEVRRLLCSARPVVVQTA 881

Query:   899 VSPSATDQDLQQA 911
              +P+ +DQ+ QQA
Sbjct:   882 ANPTISDQEQQQA 894

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

UNIPROTKB\|E1C2U7 ANAPC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|G3N2V4 ANAPC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BAB6 ANAPC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P1H2 ANAPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1306629 Anapc1 "anaphase promoting complex subunit 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|H0Y564 ANAPC1 "Anaphase-promoting complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:103097 Anapc1 "anaphase promoting complex subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H1A4 ANAPC1 "Anaphase-promoting complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RLM2 ANAPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFF9	APC1_ARATH	No assigned EC number	0.5948	0.8899	0.9833	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1854
pfam12859		83	pfam12859, Apc1, Anaphase-promoting complex subuni	1e-12
pfam01851		35	pfam01851, PC_rep, Proteasome/cyclosome repeat	0.004

>gnl\|CDD\|221812 pfam12859, Apc1, Anaphase-promoting complex subunit 1	Back alignment and domain information

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 35/117 (29%)

Query: 111 LLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGNFPAHAPFPSSSRLL 170
            L V+  +   IY   GE  ++PLP  +++ WPLP GLLLQ                   
Sbjct: 2   ALVVVLKDQAHIYYLDGESYTVPLPFEVSNAWPLPTGLLLQ------------------- 42

Query: 171 GARDIPRPRREIGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEE 227
             R              ++  LP S        +  +     LSD L+E      + 
Sbjct: 43  --RKQD------ASELASSSPLPPS--------SADLPRLFSLSDPLDEFGPVVTKS 83

Apc1 is the largest of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. Infection of human fibroblasts with human cytomegalovirus (HCMV) leads to cell cycle dysregulation, which is associated with the inactivation of the anaphase-promoting complex. Length = 83

>gnl\|CDD\|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1854
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	100.0
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	99.95
PF12859		105	Apc1: Anaphase-promoting complex subunit 1	99.61
KOG2062		929	consensus 26S proteasome regulatory complex, subun	99.51
COG5116		926	RPN2 26S proteasome regulatory complex component [	99.21
KOG2005		878	consensus 26S proteasome regulatory complex, subun	99.03
COG5110		881	RPN1 26S proteasome regulatory complex component [	98.11
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	97.6
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	95.89
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	93.13

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=7.6e-240  Score=2256.88  Aligned_cols=1432  Identities=37%  Similarity=0.570  Sum_probs=1198.3

Q ss_pred             EEecceEEEEecCCceEeeecccceeecccCCcceeEeecc-CCCCCCCCCCCCcccccCcc-----------CCCCCcc
Q 000210          114 VLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIE-GNFPAHAPFPSSSRLLGARD-----------IPRPRRE  181 (1854)
Q Consensus       114 v~~~~~l~v~~~~Ge~~~~~lpf~Vs~vW~~~~GlLler~~-~~~~~~~~~~~~~pl~~~~~-----------~~~~~~~  181 (1854)
                      |+|..|++||+.+||+++++|||+|.++|++++||||||.. ...+      +.+|+++++|           +..+..|
T Consensus         1 vl~~~~~~~~~~~g~~~~~~~~f~v~~~~~~~~gllle~~~~~~~~------~~h~~~~~~~~~~~~iv~i~d~~~~~~e   74 (1496)
T KOG1858|consen    1 VLQLKALVIYDPNGEDSLVLLPFQVVNIWPTAYGLLLERHLFVYPG------SQHPLHEATPSGDSSIVMIYDAIKQQSE   74 (1496)
T ss_pred             CcchhhheeeCCCCceeeeeccchHhhhccccceeEEecccccCCc------ccCcceecCCCCCcceEEeHHHHHHHHH
Confidence            58999999999999999999999999999999999999933 2222      3456666665           4445588


Q ss_pred             cCCCCCCCCCCCCcccccccCccccccccccccCcccCCceeEEeecCceeccccCCCcEEEecCCccceeeeecCccee
Q 000210          182 IGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQH  261 (1854)
Q Consensus       182 ~g~~~~~~~~~~~t~~~~~~~~~~~~~s~f~L~hpldE~~p~~~~~~~r~~~~~d~~~~~i~ts~~~~l~~~y~~~~~~H  261 (1854)
                      +|..+.++|++..-+....+.++... .++++-.|++|.+|.-...+|.++...|++..+.|++ +-+++.+||..++.|
T Consensus        75 ~G~~~~~s~~~n~~~s~~S~~~aP~~-~~l~~~~p~~~~~~T~m~r~g~L~~s~~~~~~l~~~~-rk~~~ts~~q~~~sh  152 (1496)
T KOG1858|consen   75 VGNTPNQSFHLNVFSSGKSTPAAPSQ-QSLSLARPSDRTLSTDMSRRGCLNISLDPDTGLKFAG-RKSLGTSHDQIKFSH  152 (1496)
T ss_pred             hcCCCccceecccCCCCCCcCcChhh-ccccccCcccccCcccchhccccccccCccccccccC-ccccCccccccccee
Confidence            89999999999988888777776665 7899999999999999999999999999999999998 778999999999999


Q ss_pred             EEEEeeeeccCccccccccCCCCCCCCCCccceeeEEecC-----CCCCCCccEEEeeccCCCCcEEEeeccccceeeEE
Q 000210          262 SVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQG-----KGAQTSASKVFLATDDDAAPIICLLLQEQKKLLAL  336 (1854)
Q Consensus       262 svw~~r~~ss~~~~s~~ss~~~~P~~~~~~eicle~iWte-----~~~~s~AsKvFlttDl~g~~~LCfL~~~~~qL~~v  336 (1854)
                      +.|..-..+++-..++.      +..++.+|.|++|+|||     ++...+|+|+|+++|++|+++.||+++++.+++.+
T Consensus       153 s~~~~~~~~sn~~~~~~------~sr~I~pe~c~~~~~te~~~~~~~a~r~ask~firtd~~~~~~n~~l~~g~~k~~~~  226 (1496)
T KOG1858|consen  153 STQHSTHIDSNKLLSNP------RSRGIVPEVCLECLWTENRGPASGASREASKVFIRTDLSGQTFNCFLVAGFVKLSGL  226 (1496)
T ss_pred             eEEeeccCCccccccCc------ccccCCccccceeeeeeeccchhhhhhhhchhhhhcccccceehhhhhhhhhhhhcc
Confidence            99997665555444332      23366778999999999     45779999999999999999999999998888788


Q ss_pred             EeeeccccceeecccCCCcccccccccccceeecccccccccccccceEEecCCCeEEEeccceeeeeeccCCCcccCcc
Q 000210          337 RLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNL  416 (1854)
Q Consensus       337 rlq~~e~~~~lif~~~~~~~~~I~a~~Aapvv~tr~~~~ig~l~~~~IlVL~p~g~L~LYsG~~~v~k~~lP~~l~~~~~  416 (1854)
                      -.+.+++.+.+-|..++|....+..++  +++.++..++++..+...+.|+.|...+.++.| ++++....|+.+....+
T Consensus       227 g~~tv~i~s~i~~~~~kd~~v~~~kv~--~~~t~~~~i~~~~vs~~gvsV~spe~~l~~~fg-~~Ll~~~~P~~~~e~~l  303 (1496)
T KOG1858|consen  227 GWSTVEIFSHISFEGAKDSTVAVSKVF--LSSTTSNPIPAPSVSLDGVSVKSPEKFLLMLFG-EVLLRFPAPEFLDESKL  303 (1496)
T ss_pred             ccceeeecccccccCCCCccceecccc--eeeeecccccccccccccceeechhhhhhhhhc-ccccccCCcchhhhhhh
Confidence            788888888888888888765556554  566667677777777888999999999999999 78889999988755443


Q ss_pred             cccccccccccccCCceeeeeccccCCeEEEEEcCCeEEEEeecCCCCcHHHHHHHHHHHHhcChhhHHHHH-HHHhhcc
Q 000210          417 SRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFL-VLLWGDN  495 (1854)
Q Consensus       417 ~~~~~f~~~~s~~~d~~I~~L~D~V~nRVTL~~s~G~m~RisLp~~psS~LV~~CL~ALr~iLp~~~~~~~l-v~~W~~~  495 (1854)
                      ++...-....+-.-++.|.+++|+|.+++|++.++|+|+|+++|..++|+|++.|++++|++|+++.+.+++ |+||..+
T Consensus       304 ~~~g~s~~~t~~~~~~~i~S~rd~V~~ev~L~~s~g~m~r~tl~~~~~S~L~~~c~~~ik~~Ls~dl~~~f~~Vkw~~~~  383 (1496)
T KOG1858|consen  304 HDSGLSADCTSQQLKIYILSLRDPVSNEVTLERSNGRMLRITLPELATSELMLTCLATIKRDLSKDLYVQFLSVKWYVDH  383 (1496)
T ss_pred             hhcccccccccchhceeeeccccccccceeeeccCceEEEeeecccchhHHHHHhHHhHhhhccHHHHhhhheeeecccc
Confidence            332221122223345789999999999999999999999999999999999999999999999999999999 8877776


Q ss_pred             CCcccccCCCCchhhHHHHHHHHHHhcCCCCcCcccCCCCCCCCchHHHhcCccccccccccc--ccCcCCCCcccccCC
Q 000210          496 NSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDSSWEFLLNSDFHKNYCKFNF--IAGISGTKPAVLVPN  573 (1854)
Q Consensus       496 na~~ls~~~~s~~~EW~~Fv~~Ll~lm~~s~~i~pKks~~~~~~dWe~Ll~S~~h~~~~~~~~--l~~~~~~~~l~~~~~  573 (1854)
                      .++    +.++.+.||+.|+++++.+||.....--+..+......|.++..+.+|+..+..+.  +...........+..
T Consensus       384 ~~~----~l~S~~~EwelF~t~~l~~mg~~~~~v~~~~~~~f~~s~~fl~~sk~~~~ss~~sdd~~~~~~~~~n~~s~~i  459 (1496)
T KOG1858|consen  384 SRP----GLPSIHSEWELFVTCLLNAMGLNTERVDYAGNFDFEGSFSFLIASKVHRPSSTGSDDRLDAFSYLSNDLSKFI  459 (1496)
T ss_pred             cCC----CCCcHHHHHHHHHHHHHHHhcCcceeehhcccccccccccceeccccccCccccccccchhhhhhhccccccC
Confidence            665    44588999999999999999864432222222334456777777777665532110  000000000000000


Q ss_pred             CCCCccc---cccccccchhhhhHHHHHHHHHHHHHHhcccccchhcHHHHHHHHHHHHHHhChhhHHHHHhhcCCcccc
Q 000210          574 SSRKEVD---GSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSK  650 (1854)
Q Consensus       574 s~~s~~~---~~~~~e~~~l~~~lp~Il~~LHLlyEElKLd~l~~~~l~~L~~lL~qla~~L~~~~w~dyY~~d~p~~~~  650 (1854)
                      +..+..+   .+...+.. .+.++..|+++||++|||+|||++++..+..|+++|+|+|++|+|..|++||.+|||.+..
T Consensus       460 ~~d~~~~~~e~~~~~~~~-~~~~~~~i~~~LH~i~Eel~L~~l~~~~~~~L~~~L~~la~~m~~~~y~~~Y~~D~p~l~~  538 (1496)
T KOG1858|consen  460 PEDSIKLPLEVELHPCYD-MFQSLSMIFITLHLIYEELKLDTLMKPRLPSLAELLLQLAKVMKWPAYVEYYIRDFPELFL  538 (1496)
T ss_pred             ChHhhhhhHHhhhCcchh-hhhhHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHhCccHHHHHHHhccHHHHh
Confidence            1110000   01122222 4778888999999999999999999999999999999999999999999999999999876


Q ss_pred             ccCCCcCCcCCCCCCcHHHHHHHHHccCCCCCCCCCCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCCCCCCCccccc
Q 000210          651 KFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNI  730 (1854)
Q Consensus       651 ~~~~~~~~~~~~~PPsI~~~L~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~s~~~~~i  730 (1854)
                      .++......+..+||+||+|+++|+++++...+|+.++.+++++ .   .+          ......-........+|.+
T Consensus       539 ~~~~~~~l~~~~~Ppsi~~~l~~~l~~~~~~~~~~~l~~v~ers-y---~~----------~~~~~p~~~~~~~~~~~~~  604 (1496)
T KOG1858|consen  539 TIGLEINLDFEHEPPSIFKWLEGCLRRSSEVPFYDFLEYVCERS-Y---VL----------TILSIPKTVSLESLRRCLI  604 (1496)
T ss_pred             cchhhhhccccCCChHHHHHHHHHHhcCCCCCCccccccccccc-c---hh----------hhccccchhhHhhcchhhc
Confidence            65544333344489999999999999887777888887776544 1   11          1111111112234567777


Q ss_pred             CCCCCCChHHHHHHHHHhcCCChhhhcccChhhHHHHHHHHHHhhcCCCCCCchhhhhhcCchhhccccccccccccccc
Q 000210          731 APGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANTCKSKELE  810 (1854)
Q Consensus       731 ~~~~~~~~~~~~vl~m~~~~~~~~~Le~lP~GV~~PL~eaL~~cr~~pp~~w~~~~y~LIgR~DL~~~~~~~~~~~~~~~  810 (1854)
                      .+.+.+...+.++.+|..++|+++++|++|+|+++||+++|+.||+.|+.+|+.++|.||+|+|++....+...+ ...+
T Consensus       605 ~~~~~s~~~~~l~~~m~~~r~~~~~~~r~p~g~~~~i~~al~~~r~~~~~~~~~~a~~Li~r~di~~~~~~~~~~-~~~~  683 (1496)
T KOG1858|consen  605 NPVSLSMILEQLEELMTRERFTLKDLERYPFGVSLIIRTALRSAREEPSMNWPSDAYRLIKRPDIASTKQPKTGK-VVFE  683 (1496)
T ss_pred             ccchhhhhHHHHHHHHHHhhhhhhhhhhcccccccHHHHHHHHHhhCCCCCCCHHHHHHhcchhhhhccCCcccc-eeee
Confidence            777777778899999999999999999999999999999999999999999999999999999998621111000 0000


Q ss_pred             ccccccccccCcccccccCCCccCccccccCCCCCCCCCCCCcCCCCcccCchhhcccccccccCCcchHHHHHHhhccC
Q 000210          811 TQTNVNLISMSTPYMLHLHPVTVPSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSA  890 (1854)
Q Consensus       811 ~~~~~~~~s~~~~~~~~~~p~~i~~~~~d~~~~~~~~~~d~~~~d~~~~dg~~~~~~~~~~l~F~~D~R~~Ev~~LL~ss  890 (1854)
                      .+.+.+           ..++..++           ...         .|++.+...+++.|||++|+|++||++||+++
T Consensus       684 ~~~~~~-----------~~~~~~~s-----------~~~---------~~~~~~~~~~i~~l~f~eD~R~~~V~~lL~~~  732 (1496)
T KOG1858|consen  684 MQVKSS-----------DVPKGTPS-----------TLR---------DDQSIDPLKKITGLIFSEDRRMAEVRSLLNSS  732 (1496)
T ss_pred             hhhhcc-----------cccCCCcc-----------ccC---------cccchhhhhHhhhcccCCCccHHHHHHHhccC
Confidence            000000           00111111           011         13344445789999999999999999999999


Q ss_pred             CCeeEEccCCCCCCHHHH---HHHHHHHHHHHhhccccchhhhhccccCccCccccccCceeeeeEecCCCCcEEEeCCC
Q 000210          891 RPVAIQTSVSPSATDQDL---QQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPN  967 (1854)
Q Consensus       891 ~p~~i~~~~~~~~sd~e~---qq~~l~~l~~RTlalpvGRgm~t~~t~~pl~Te~~~iP~l~L~g~~p~~~n~tV~ld~~  967 (1854)
                      +|+.|++.+. ..+|+++   |+++++++|.||||+|||||||||+|.+|.+||.+++|++|+.|+.|+ +++||+.. +
T Consensus       733 ~pi~i~~~~~-~~~D~~~~e~q~~~l~~lc~RTma~pvGrg~l~~~T~~p~~t~~~~~p~l~~~g~~p~-~~~ti~~~-e  809 (1496)
T KOG1858|consen  733 SPIVIETEQL-KTEDLEFKEEQEKFLQQLCLRTMALPVGRGMLTYGTKVPLPTESLTIPKLNLLGRHPG-TLITIENK-E  809 (1496)
T ss_pred             CCeEEEEeee-ccchhhhHHHHHHHHHHHHHHHhccchhhhhhcccccCCCcccccccchhhccccCCc-ccceecCc-h
Confidence            9999999988 6677776   777889999999999999999999999999999999999999999986 67777764 4


Q ss_pred             ccCcccCCChhhHHHHHhhhcccCCccccCCcceeecccCCCCchhhHHHHHHhhccCccCcCCHhhHHhhccCCChHHH
Q 000210          968 IRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTA 1047 (1854)
Q Consensus       968 ~~~~~~~~~W~~FHnGVAaGL~is~~~~~i~~sWI~~Nkp~~~~~~hAGfLlgLGLnGhL~~L~~~~i~~YL~~~he~ts 1047 (1854)
                      +.+ +++++||+||||||+||+|+|.+++||++||+||||++++++||||||||||||||+.|++||||+||+++|++||
T Consensus       810 ~~~-~~~teWp~FhngVa~GLrIsp~~~~Ids~WI~fnkp~~~~a~haGfl~glGLnGhL~~L~~~~i~qyls~~h~~tS  888 (1496)
T KOG1858|consen  810 IEN-QELTEWPEFHNGVASGLRISPFATEIDSSWIVFNKPKELTAEHAGFLFGLGLNGHLKALNTWHIYQYLSPKHEMTS  888 (1496)
T ss_pred             hhc-cccccchhhHHHHHhhcccCcccccccceeEEEecCCCcchheeheeeecccccccccccHHHHHHHccCCCccee
Confidence            544 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCc-cCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCC
Q 000210         1048 VGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSV-ELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDN 1126 (1854)
Q Consensus      1048 iGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~-dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~ 1126 (1854)
                      |||||||||||+||||.+++|+|++|++|++|+++ |+|||+.+|+||++||||||+||+||+|+|+|+.||+|+++.|+
T Consensus       889 vgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~  968 (1496)
T KOG1858|consen  889 VGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPEN  968 (1496)
T ss_pred             HHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCccc
Confidence            99999999999999999999999999999999999 99999999999999999999999999999999999999998899


Q ss_pred             cccchhhHHHHHHHHHHHHhcCCCCcCCchhh-HHHHHHHHhCCcccccccccccccccccccccccccccCcccccccc
Q 000210         1127 VLEREGHAVSAGFALGLVALGRGEDALGFTDT-LVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVT 1205 (1854)
Q Consensus      1127 ~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~-l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt 1205 (1854)
                      +++||+|++||||+||||+||+|+...|+.|. +.++|..||.|+.   +|+  ....+.++++.+.|+.||++.|+||+
T Consensus       969 ~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~---~r~--~~~~~~~~~~~~~q~~eg~t~~~dv~ 1043 (1496)
T KOG1858|consen  969 VLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGV---RRP--IDVPQNEKYRSSTQILEGSTSNLDVT 1043 (1496)
T ss_pred             chhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccc---ccc--ccccccccccchhhhccCceeeeecC
Confidence            99999999999999999999999999999999 8999999996552   232  33445555566899999999999999


Q ss_pred             chhHHHHHHHHHhCCCCHHHHhhcCCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhccC
Q 000210         1206 APGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRD 1285 (1854)
Q Consensus      1206 ~pgA~lALgLiylkT~n~~ia~~L~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~ 1285 (1854)
                      +|||+||||||||||||..||++|++|+|.|.+|++|||++++|++|++|||||.|.|+.+||.+|+|+++++....   
T Consensus      1044 ~pGAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~--- 1120 (1496)
T KOG1858|consen 1044 APGAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADL--- 1120 (1496)
T ss_pred             CccHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhh---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987642   


Q ss_pred             CCCCcccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhc-cccccccCCCCCCCccccccchhH
Q 000210         1286 DTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEI-KPVFATRGNAFPKGLSRYVDRCTL 1364 (1854)
Q Consensus      1286 ~~~~~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~-~pla~~~~~~~p~~~~~~l~r~t~ 1364 (1854)
                          .+|+|.|++.|+|+||+||||||||||||||+|..|+++|..++++|++.. .|..     .++    +.+++.|+
T Consensus      1121 ----~~dvd~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~-----~~~----~~~~~~tv 1187 (1496)
T KOG1858|consen 1121 ----QEDVDLETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLK-----SND----GRVTAVTV 1187 (1496)
T ss_pred             ----hhhhhhhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCc-----cCC----CcccchhH
Confidence                267899999999999999999999999999999999999999999998732 2322     222    34579999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCCChhhHHHHHHHHhc
Q 000210         1365 EICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYP 1444 (1854)
Q Consensus      1365 ~~cl~v~~lALslVmAGTGdl~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~TlstS~~AIA~LlialyP 1444 (1854)
                      ++|++++++|+|||||||||++|+|++|+||++...+++++||.|||+|||+|+||||||||||++||.+||+|+|+|||
T Consensus      1188 ~~cl~v~i~sls~vmagSgdleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~s~~sIa~ll~slfp 1267 (1496)
T KOG1858|consen 1188 ERCLSVLIISLSMVMAGSGDLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTISTSNLSIAALLISLFP 1267 (1496)
T ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCCCcHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999778999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhHHHHHHHHhhccCceEEEEeeCCCCCeeEeeEEEEEecCcccccceeEEecccccCCCCcceEEEEeC
Q 000210         1445 RLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCG 1524 (1854)
Q Consensus      1445 ~fP~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dvdt~~pv~vpV~v~~~~~~~~~~t~~~~~tPcLLP~~~~i~~i~v~~ 1524 (1854)
                      .||.+++|||||+||+||||+||+|||+|+++|+||+.||++|++|++|.+...+++   ..+|||||+.+.+++|.+++
T Consensus      1268 ~fP~~~~Dnr~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k~~~~~~~~---~iap~lLP~~~~l~~v~v~g 1344 (1496)
T KOG1858|consen 1268 HFPISPSDNRYHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQKGTTLYSLT---EIAPILLPEYSTLSSVSVLG 1344 (1496)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHhcccccccccccccCceEEEeeeEEecccchhhhh---hcCCeeccccccchhhhhcC
Confidence            999999999999999999999999999999999999999999999999988876644   68999999999999999999


Q ss_pred             CCeeeEEEeccCCCCCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCCcchhhHHHHHHhhhccCCCCCCCCCCCCCCccc
Q 000210         1525 PRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVA 1604 (1854)
Q Consensus      1525 ~~Y~p~~id~~~~~~~~~~~~~~~~~~~~~~l~VKrr~g~lsy~~dp~g~~sll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1604 (1854)
                      ++|||+.|+.+.+.   .    +  .-++++++++.|++.++|.+||.+++++++++..                     
T Consensus      1345 ~~yw~~~iel~~~~---~----~--~~ks~~l~i~~~~~~~~~~eD~~~~~~l~a~t~~--------------------- 1394 (1496)
T KOG1858|consen 1345 PNYWPVKIELSFNS---Q----H--LEKSNTLDINPRDGTLSREEDSDLFKSLLATTLP--------------------- 1394 (1496)
T ss_pred             CccceEEEecccch---h----h--ccccccccccccccceeecCChhHhHHHHhhcCC---------------------
Confidence            99999999974332   1    1  1168999999999999999999999999988762                     


Q ss_pred             hhhHhhhcCCChhHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcccccccccccCC
Q 000210         1605 VDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGD 1684 (1854)
Q Consensus      1605 ~~~~~~~fs~d~~~~~f~~~~c~~~~~~~~~~~~~~~~~~~l~ec~~~d~~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~ 1684 (1854)
                      + .  ..|++||.+++|+++||++.++...+.+...     +++|+++|.++.+|+         .|           +.
T Consensus      1395 ~-~--~~F~s~~s~~~~~~~~~~~~~n~~~~~~~ld-----~~~~~t~~~~e~~~~---------~~-----------~~ 1446 (1496)
T KOG1858|consen 1395 P-T--SLFSSEPSLLNFASLCCDNNVNSLGDKLLLD-----FFDNVTRDRIESLSV---------LL-----------QN 1446 (1496)
T ss_pred             c-c--hhccCCcHHHHHHHhhcccccccccchhhhh-----hhhhhHHHHHHhhhh---------hh-----------cc
Confidence            1 1  1899999999999999999998887754433     899999999999998         11           24


Q ss_pred             ccccchhHHHHHHHH
Q 000210         1685 SLNISNLKLALAYID 1699 (1854)
Q Consensus      1685 s~~lw~lkl~~~y~~ 1699 (1854)
                      +...||.|++.+|..
T Consensus      1447 ~~~~~~~~~l~~~~k 1461 (1496)
T KOG1858|consen 1447 FESFWQGKLLAKLLK 1461 (1496)
T ss_pred             ccchhhHHHHHHHHH
Confidence            457899999998865

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12859 Apc1: Anaphase-promoting complex subunit 1	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1854
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 69.5 bits (169), Expect = 9e-12
 Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 208/612 (33%)

Query: 197 NHNIKGETVSMSSHL--ILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASY 254
           +H++  ET         ILS   +               + +FD + +   D        
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFED-------------AFVDNFDCKDV--QD-------- 40

Query: 255 NKGKMQHSVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQGKGAQTSASKVFLA 314
               M  S+   E ++ I                       R  W     Q    + F+ 
Sbjct: 41  ----MPKSILSKEEIDHIIMSKD------------AVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 315 TDDDAAPIICLLLQEQKKLLALRLQSVEIN---NEILFDIKPDMSWSIPAVAAAPVIVTR 371
                      +L+   K L   +++ +        ++  + D  ++   V A    V+R
Sbjct: 85  E----------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSR 133

Query: 372 PR----VKVGLLQYTDIVVLAPDNALLLY----SGKQCL----CR------------YML 407
            +    ++  LL+      L P   +L+     SGK  +    C             + L
Sbjct: 134 LQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 408 -------PSSLRKG--NLSRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRC- 457
                  P ++ +    L   ++ +  +   H   I     +++  +  ++ +     C 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 458 -ELR--QNPS--SSLTNDC---IT----AMAEGLSSNFYNYFLV--LLWG---DNN---- 496
             L   QN    ++    C   +T     + + LS+    +  +         D      
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 497 STYLSEASSDVDSEWNSFCSIIMQMGQKPSLIS------KQH--------------LNSA 536
             YL     D+  E     +        P  +S      +                L + 
Sbjct: 308 LKYLDCRPQDLPRE---VLTTN------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 537 PDSSWEFLLNSDFHKNYCKFNFI----AGISGTKPAVLV---PNSSRKEVDG-------- 581
            +SS   L  +++ K + +   +    A I      +L     +  + +V          
Sbjct: 359 IESSLNVLEPAEYRKMFDRL-SVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 582 SLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEY----- 636
           SL+      S +       + S+Y  LK+    +  L             + + Y     
Sbjct: 415 SLVEKQPKESTIS------IPSIYLELKVKLENEYALH---------RSIV-DHYNIPKT 458

Query: 637 ---------YLDHYIRDFPCLSKKFGMSMDSVSQKNPPSLFK-------WLENCLEY-GY 679
                    YLD Y           G  + ++      +LF+       +LE  + +   
Sbjct: 459 FDSDDLIPPYLDQYFYSH------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 680 NYANVNDLPPLI 691
            +     +   +
Sbjct: 513 AWNASGSILNTL 524

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1854
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.78

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

Probab=100.00  E-value=5.6e-36  Score=388.68  Aligned_cols=385  Identities=17%  Similarity=0.263  Sum_probs=287.4

Q ss_pred             CCChhhHHHHHhhhcccCCcc---ccCCcceeecccCCCCchhhHHHHHHhhcc--CccCcCCHhhHHhhccCCC-----
Q 000210          974 LKSWPEFHNAVAAGLRLSPIQ---GKMSRTWIMYNKPEEPNITHAGLLLALGLH--GHLRALTISDIYKYFYQEH----- 1043 (1854)
Q Consensus       974 ~~~W~~FHnGVAaGL~is~~~---~~i~~sWI~~Nkp~~~~~~hAGfLlgLGLn--GhL~~L~~~~i~~YL~~~h----- 1043 (1854)
                      ..+|+.|.+..|.|+-.....   -..-...+. +...+..+..+|+||||||.  ||.+. ....+.+||...+     
T Consensus       370 ~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~-~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~~L~~~~~~~~~  447 (963)
T 4ady_A          370 AQNWAKFTATASLGVIHKGNLLEGKKVMAPYLP-GSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKNIIVENSGTSGD  447 (963)
T ss_dssp             CCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTST-TSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHHHHHHHSSCCSC
T ss_pred             cchHHHHHHHHHhhhhccCchHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHcCccccccc
Confidence            379999999999999443221   111222221 11134468999999999994  77642 1224556665443     


Q ss_pred             ---hHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHcc
Q 000210         1044 ---ESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGR 1120 (1854)
Q Consensus      1044 ---e~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~ 1120 (1854)
                         +.+++|+.||||.+|+||+|+++.+.|.-.+       .+-  +..+..+|.+||||+|+||+|..+++.|++.+..
T Consensus       448 ~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L-------~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e  518 (963)
T 4ady_A          448 EDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL-------YND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE  518 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH-------HTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------hcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence               7899999999999999999999999985443       211  1245568899999999999999999999987754


Q ss_pred             CCCCCCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccc
Q 000210         1121 RSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMV 1200 (1854)
Q Consensus      1121 ~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~i 1200 (1854)
                      .       ++|.++++|++|||||++|+++.+    |.+++.|..        .+                         
T Consensus       519 ~-------~~e~vrR~aalgLGll~~g~~e~~----~~li~~L~~--------~~-------------------------  554 (963)
T 4ady_A          519 T-------QHGNITRGLAVGLALINYGRQELA----DDLITKMLA--------SD-------------------------  554 (963)
T ss_dssp             C-------SCHHHHHHHHHHHHHHTTTCGGGG----HHHHHHHHH--------CS-------------------------
T ss_pred             c-------CcHHHHHHHHHHHHhhhCCChHHH----HHHHHHHHh--------CC-------------------------
Confidence            2       267899999999999999999876    557777765        11                         


Q ss_pred             cccccchhHHHHHHHHHhCCCCHHHHhhc-CCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhh
Q 000210         1201 NVDVTAPGAIIALSLMFLKTESEAIVSRL-SIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSN 1279 (1854)
Q Consensus      1201 n~dvt~pgA~lALgLiylkT~n~~ia~~L-~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~ 1279 (1854)
                       -.+...||++|+||+|+||||..+.++| ++     +.++.-.|.....++|.++|+..+-        +++|+++...
T Consensus       555 -dp~vRygaa~alglAyaGTGn~~aIq~LL~~-----~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L  620 (963)
T 4ady_A          555 -ESLLRYGGAFTIALAYAGTGNNSAVKRLLHV-----AVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLL  620 (963)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH-----HHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTG
T ss_pred             -CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----hccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHH
Confidence             1123569999999999999999988855 54     2222233444788999999988762        4566655432


Q ss_pred             hhhccCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccc
Q 000210         1280 VEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYV 1359 (1854)
Q Consensus      1280 ~~~~~~~~~~~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~pla~~~~~~~p~~~~~~l 1359 (1854)
                      .+          .-|      +  +|+.||++|+|+-+||+++.+|.++|..+..           .+        ++.+
T Consensus       621 ~~----------~~d------~--~VR~gAalALGli~aGn~~~~aid~L~~L~~-----------D~--------d~~V  663 (963)
T 4ady_A          621 SK----------SHN------A--HVRCGTAFALGIACAGKGLQSAIDVLDPLTK-----------DP--------VDFV  663 (963)
T ss_dssp             GG----------CSC------H--HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-----------CS--------SHHH
T ss_pred             Hh----------cCC------H--HHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-----------CC--------CHHH
Confidence            21          122      1  5999999999999999999999998765421           00        1234


Q ss_pred             cchhHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCC------
Q 000210         1360 DRCTLEICLHLVVLSLSVVMAGSGHL---QTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFST------ 1430 (1854)
Q Consensus      1360 ~r~t~~~cl~v~~lALslVmAGTGdl---~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~Tlst------ 1430 (1854)
                      ++.        +++|||+|++||+|.   +|...+|+|.+++.. .|..-.+.|++++|||++++|||+.|+++      
T Consensus       664 rq~--------Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d-k~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~  734 (963)
T 4ady_A          664 RQA--------AMIALSMILIQQTEKLNPQVADINKNFLSVITN-KHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTG  734 (963)
T ss_dssp             HHH--------HHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTC
T ss_pred             HHH--------HHHHHHHHhcCCccccchHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCC
Confidence            443        799999999999999   999999999988763 33456799999999999999999999997      


Q ss_pred             --ChhhHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhccCceEEEEeeC-CCCCe
Q 000210         1431 --NNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDV-DTGLP 1483 (1854)
Q Consensus      1431 --S~~AIA~LlialyP~fP~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dv-dt~~p 1483 (1854)
                        ++.|+|||+++...|          ||.+|.||.+||+.|||||++|+ |.+.|
T Consensus       735 ~~~~~a~~Gl~~f~q~w----------yw~pl~~~lsla~~Pt~li~l~e~dL~~p  780 (963)
T 4ady_A          735 TLDTKSVVGLVMFSQFW----------YWFPLAHFLSLSFTPTTVIGIRGSDQAIP  780 (963)
T ss_dssp             CBCHHHHHHHHHHTTTT----------TCGGGGGGGGGGEEECBEEEEETTTTBEE
T ss_pred             CCCHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCcEEEEecccccCCC
Confidence              268999999975332          33348999999999999999999 86534

PyMOL of 4ady

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00