Citrus Sinensis ID: 000236

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810

MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA

ccccccccccEEEEEEEEEEcccEEEEcccccEEEEEcccccccccccHHHHccccccccccccccEEEEEEEEEEccccccccEEEEEEccHHHHHccccccccccccEEEEEEEEEEccEEEEEEcccccEEEEcccccccccccccccccEEEEEEEEEcccccEEEEccccccccHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEccccEEEEEcccccccccccccccccccccEEEEEEEEEEccccEEEEEccHHHHcccccccccccccEEEccEEEEEEEccEEEEEccccccccccEEEccccccccccccccccccccEEEEEEEEEEccccEEEEEccccccccccccccccccccEEEEEEEEEEcccEEEEEcccEEEEEEccccccccccccccccccccEEEEEEEEEEccEEEEEEEcHHHccHHHHHHcccccccccEEEEEEEEEEEcEEEEEEcccEEEEEEccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccccEEEEEEEEEEccEEEEEEEEcccEEEEEEccccccccccccccccccccccEEEEEEEEEccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccEEEEEEccccEEEEEccccccHHccccccccccccEEEEEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEccEEEEEEcccccEEEEEEcEEccccccccccEEEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEEEcccccccEEEEEEcccccccccHHHHHHcccccccccEEEEEEEEEEccEEEEEEcccEEEEEEcccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcccccccHHHHcccccccccccccccEEEEEEEEEEccEEEEEEccccEEEEEEcccccccccccccccccccccEEEEEEEEEEccccEEEEEcccccccccccccccccHHHHcccccccEEEEEEEEEEEcccEEEEEEcccEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEccEEEEEEcccEEEEEEccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccccccccccEEEEEEEEEEccEEEEEEEcccEEEEEEcccccHHHcccHHHHcccccEEEEEEEEEEccccEEEEcccccccccccHHHcccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcc

ccccccccccEEEEEEEEEccccEEEEcccccEEEEEcHHHHHHHccccccccccccHHHHcccccEEEEEEEEEcccccccccEEEEEEEcHHHHHccccHHHcccccEEEEEEEEEcccEEEEEEcccccEEEEEHHHcccccccccccccEEEEEEEEEccccEEEEEEccHHHHHHHHccHHHcccHHHcccccEEEEEEEEEccccEEEEEcccccEEEEccccccccccccHHHcEccccEEEEEEEEEcccccEEEEEEccHHcccccccHHccccccEEccEEEEEEcccEEEEEEccccccEEEEEEcccccccccccccccEccccEEEEEEEEEcccccEEEEEEcccHcccccccHHccccccEEEEEEEEEcccEEEEEEcccEEEEEEcHHccccccccccHEEccccEEEEEEEEcccccEEEEEcccccccccccHHHHHHcccccEEEEEEEEEcccEEEEEEccccEEEEEHHHccHcccccHHHcEEcccEEEEEEEEEcccccEEEEEEccccccHHHHHHcccccEEEEEEEEEEcccEEEEEEccccEEEEEcHHHcccccHccccHHHHcccccEEEEEEEEcccccEEEEEEcHHHcccccccHHHHHHcccccEEEEEEEEEcccEEEEEEccccEEEEcHHHccHHHcccHHHccccccEEEEEEEEEcccccEEEEEEEccccccccHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEEEEEEccEEEEEEcccccEEEEEEccccccccEccccEEEEEEEEEcccccEEEEEccccHccHHHHHHcccHHHHHHHHHHHccccccccEEEEEEEEEEEEEEEEEcccccEEEEEccccccccccccccccccccEEEEEEEEEEccccccEEEEEcccccccccccHHHHHHHHHcccccEEEEEEEEEcccEEEEEEccccEEEEEHHHHccccccccccccHccccccEEEEEEEEccccccEEEEEEEEccccccHccccccccccHHHHHHcccccEEEEEEEEEcccEEEEEEccccEEEEEHHHcccccHHcccHHHccccccEEEEEEEEEcccccEEEEEEccccccccccccHHcccccHHHcccccEEEEEEEEEEcccEEEEEEccccEEEEEEEEEccccccccccccccccccccHHccccccEEEEEEEEEccccccEEEEEEEEEccccccccccccccccccccccccHccHHHcccccEEEEEEEEEcccEEEEEEcccEEEEEEcccccHHHcccHHHHcccccEEEEEEEEEcccccEEEEEEEccccccccccHHHHHHHcccccEEEEEEEEEcccEEEEEEccccEEEEEEcccccccccccHHHHcccccEEEEEEEEEcccccEEEEEEcccccccccHHHHHccccccccccccEEcccccccEEccccccccccccccccccccHHHcccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccc

MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARaadaldpildneieanednllptiFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDhgyilhfglpsftgflprnnlaensgidvkpgllLQGVVRSIDRTRKVVylssdpdtvskcvtkdlkgisidllvpgmMVSTRVQSILENGVMLSFLTYFTGTvdifhlqntfpttnwkndynqhkkvnarilfvdptsravgltlnpyllhnrappshvkvgdiydqskvvrvdrglgllldipstpvstpayvtISDVAEEEVRKLEKKykegscvrVRILGFRHLEGLATGILKASAfeglvfthsdvkpgmvVKGKVIAVDSfgaivqfpggvkalcplphmsefeivkpgkkfkvGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFvrfyngvqgfaprselgldpgcepssmyhvgQVVKCRimssipasrrinlsfmmkptrvseddLVKLGSLVSGVVDVVTPNAVVVYVIAKgyskgtiptehladHLEHATVMKsvikpgyefdqllvldnessnLLLSAKYSLINsaqqlpsdashihpnsvvHGYVCNIIETGCFVRFlgrltgfaprskavdgqradlsktyyvgqsvrsnildvnsetgrITLSlkqsccsstdasFMQEHFLLEEKIAMLQSskhngselkwVEGFIIGSVIegkvhesndfGVVVSFEEHSDVYGFITHHqlagatveSGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKReaskdlgvhQTVNAIVEIVKENYLVlslpeynhsigyasvsdyntqkfpqkqflngqSVIATVmalpssstAGRLLLLLKAISETetssskrakkkssydVGSLVQAEITEIKPLELRLKFgigfhgrihitevnddksNVVENLFSNFKIGQTVTARIIAksnkpdmkKSFLWElsikpsmlTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIldsayepselQEFQRRFHIgkavtghvlsiNKEKKLLRLVLRpfqdgisdktvdisndnmQTFIHEGDIVGGRISKILsgvgglvvqigphlygrvhftelknicvsdplsgydegqfdplsgydegqfvkcKVLEISRTVRGTFHVELSLRssldgmsstnssdlstdvdtpgkhlekiedlspnmivQGYVKNVTSKGCFIMLSRKLDAKVLLSNlsdgyvespekefpigklvagrvlsveplskRVEVTLKTSDSRTASQSeinnlsnlhvgdivIGQIKRVESYGLFITIENTNLVGLChvselsedhvDNIETIYRAGEKVKVKILKVDkekrrislgmkssyfkndadnlqmsseeeSDEAIEEVGSYnrssllenssvavqdmdmesedggSLVLAQIesrasvpplevnlddeqpdmdngisqnqghtdeaktideknnrhakKKEKEEREQEIRAAEERLlekdaprtpdeferlvrsspnssFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLeneygnppeEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLslprhkhikFISQTAILEFKNGVADRGRSMFEGILseypkrtdlwsiyldqeirlgDVDLIRGLFERAislslppkkMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA

MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEnsgidvkpgllLQGVVRSIDRTRKvvylssdpdtvskcvtkdLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLlhnrappshvkvgdiydqSKVVRVDRGLGllldipstpvstpayvtiSDVAEEEVRKLekkykegscvrvRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRvlgvkskritvthkktlvksklaiLSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVsgvvdvvtpNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFaprskavdgqradlsktyyvgqsvrsnildvnseTGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFidrfreansnrqaqkkkrkreaskdlgvhqtvNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISetetssskrakkkssydvgSLVQAEITEIKPLELRLKFGIGFHGRIHitevnddksNVVENLFsnfkigqtvtariiaksnkpdmkKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKavtghvlsinkeKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLrssldgmsstnssdlstdvdtPGKHLEkiedlspnmiVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGyvespekefpigklvagrvlsveplskrvevtlktsdsrtasqseinnlsnlhvgdIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETiyragekvkvkilkvdkekrrislgmkssyfkndadnLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNgisqnqghtdeaktideknnrhakkkekeereqEIRAaeerllekdaprtpdeferlvrsspnssFVWIKYMAFMLSMADVEKARSIAERALQtinireenekLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALlslprhkhikfisqtaileFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFEraislslppkkmKFLFKKYLEYEksvgeeerieyvkQKAMEYVESTLA

MYPQNISAGMKLWGVVAEVNEKDLVIClpgglrglaraadaldpILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWlslrlsllykglslETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKvvrvdrglgllldIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDdlvklgslvsgvvdvvtpnavvvyvIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAnsnrqaqkkkrkreaskDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIsetetssskrakkkssYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMsseeesdeaieevgsYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDeknnrhakkkekeereqeiraaeerllekDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWlrrvqrllkqqqEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIslslppkkmkflfkkYLEYEKSVGEEERIEYVKQKAMEYVESTLA

*******AGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSA*******SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF*********************LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI******************VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS********************************LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL**********************NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK************************************************************************************************************************************************************SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV*************

MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQ****************LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL******DVKPGLLLQGVVRSIDRT**VVYLSSDPDTV**CVT**LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT**TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL************LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT*********LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF***********LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC******************************LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA*A*VESGSVIQAAILDVAKAERLVDLSLKTVFID************************GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY*T*KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL****************KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL*******************ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP*ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV***************SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD**************DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD**********NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS*********IYRAGEKVKVKILKVDKE**************************************************VQDMDMESEDG****LAQIESRASVPPLEVNLDDEQPDMDN****************************************************EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV*AVV***L*SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST**

MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN*****************LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE******************SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS*******************GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT**********QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL***************GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK****************IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA

****NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD******************KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF**********************G***RSSLLENSSVAV************************PPLEVN****************************************************LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1810	2.2.26 [Sep-21-2011]
Q14690		1871	Protein RRP5 homolog OS=H	yes	no	0.936	0.905	0.291	0.0
O74835		1690	rRNA biogenesis protein r	yes	no	0.660	0.707	0.279	1e-121
Q05022		1729	rRNA biogenesis protein R	yes	no	0.619	0.648	0.289	1e-117
A7MB10		1874	Protein RRP5 homolog OS=B	yes	no	0.684	0.661	0.282	1e-116
Q6NS46		1862	Protein RRP5 homolog OS=M	yes	no	0.688	0.669	0.277	1e-114
O06147		481	30S ribosomal protein S1	yes	no	0.193	0.727	0.236	4e-15
O84100		569	30S ribosomal protein S1	yes	no	0.186	0.594	0.247	9e-15
P46836		481	30S ribosomal protein S1	yes	no	0.193	0.727	0.234	2e-14
Q4L6I1		392	30S ribosomal protein S1	yes	no	0.092	0.428	0.310	5e-14
Q9Z8M3		580	30S ribosomal protein S1	yes	no	0.181	0.565	0.246	8e-14

>sp\|Q14690\|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3	Back alignment and function desciption

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1896 (29%), Positives = 919/1896 (48%), Gaps = 201/1896 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K LL L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +  RVL +      VE++    D+      + + LS    G +   + ++ E+       
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKG 1431

Query: 1364 ENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            E  N       ++  ++ V+            +   R G + +    +   E+ R+S   
Sbjct: 1432 EKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKP 1487

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
            K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +  
Sbjct: 1488 KKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGL 1543

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
                 ++PPL  + D E+ +  +             TI  K ++  ++ EK++ E+E+  
Sbjct: 1544 DSLTPALPPLAESSDSEEDEKPH-----------QATI--KKSKKERELEKQKAEKELSR 1590

Query: 1534 AEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
             EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+
Sbjct: 1591 IEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTIS 1650

Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
             REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ +
Sbjct: 1651 FREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQ 1708

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTA 1711
             A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A
Sbjct: 1709 EAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFA 1768

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
             LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL P
Sbjct: 1769 QLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAP 1828

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            K+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1829 KRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864

Involved in the biogenesis of rRNA.
Homo sapiens (taxid: 9606)

>sp\|O74835\|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp5 PE=1 SV=1	Back alignment and function description

>sp\|Q05022\|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1	Back alignment and function description

>sp\|A7MB10\|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1	Back alignment and function description

>sp\|Q6NS46\|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2	Back alignment and function description

>sp\|O06147\|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1	Back alignment and function description

>sp\|O84100\|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rpsA PE=3 SV=1	Back alignment and function description

>sp\|P46836\|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN) GN=rpsA PE=3 SV=2	Back alignment and function description

>sp\|Q4L6I1\|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1	Back alignment and function description

>sp\|Q9Z8M3\|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1810
359481849		1879	PREDICTED: protein RRP5 homolog [Vitis v	0.961	0.926	0.726	0.0
297739784		1862	unnamed protein product [Vitis vinifera]	0.957	0.930	0.727	0.0
356533079		1885	PREDICTED: protein RRP5 homolog [Glycine	0.966	0.928	0.662	0.0
449453908		1898	PREDICTED: protein RRP5 homolog [Cucumis	0.969	0.924	0.635	0.0
240255326		1896	RNA binding protein [Arabidopsis thalian	0.969	0.925	0.628	0.0
10998136		1765	pre-rRNA processing protein RRP5 [Arabid	0.964	0.989	0.628	0.0
297833988		1843	S1 RNA-binding domain-containing protein	0.912	0.895	0.631	0.0
222636634		1898	hypothetical protein OsJ_23484 [Oryza sa	0.969	0.924	0.561	0.0
242043296		1862	hypothetical protein SORBIDRAFT_02g00600	0.941	0.915	0.557	0.0
218199275		1848	hypothetical protein OsI_25303 [Oryza sa	0.941	0.922	0.545	0.0

>gi\|359481849\|ref\|XP_002276633.2\| PREDICTED: protein RRP5 homolog [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2622 bits (6795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1323/1821 (72%), Positives = 1528/1821 (83%), Gaps = 81/1821 (4%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS GMKLWGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH
Sbjct: 126  KNISPGMKLWGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFH 185

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            +GQLVSC+VLQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGY
Sbjct: 186  IGQLVSCVVLQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGY 245

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
            ILHFGLPSFTGFLP+++ A+ + I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVT
Sbjct: 246  ILHFGLPSFTGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVT 304

Query: 184  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
            KDLKGISIDLL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYN
Sbjct: 305  KDLKGISIDLLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYN 364

Query: 244  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            Q+KKVNARILF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL+
Sbjct: 365  QNKKVNARILFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLE 424

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            +PSTP STP YVT               YKEGS VRVRILGFR+LEGLA G LKASAFEG
Sbjct: 425  VPSTPASTPTYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEG 469

Query: 364  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
             VFTHSDVKPGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAE
Sbjct: 470  SVFTHSDVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAE 529

Query: 424  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            L+FRVLG KSKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNG
Sbjct: 530  LIFRVLGCKSKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNG 589

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            VQGFAP SELGL+PGC  S MYHVGQVVKCR+  S+PASRRINL           +D+VK
Sbjct: 590  VQGFAPSSELGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVK 638

Query: 544  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
            LGS+V GVVD VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLL
Sbjct: 639  LGSVVGGVVDRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLL 698

Query: 604  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            VLD E +N +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF
Sbjct: 699  VLDVEGNNFILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGF 758

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
            +PR+K +D QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FL
Sbjct: 759  SPRNKVMDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFL 818

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            LEEKIA LQ S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+Q
Sbjct: 819  LEEKIAKLQLSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQ 878

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L   T E GS +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L
Sbjct: 879  L---TAERGSTVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKEL 935

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
              HQTVNAIVEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMAL
Sbjct: 936  QPHQTVNAIVEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMAL 995

Query: 904  PSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            PS ST GRLLL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGF
Sbjct: 996  PSPSTVGRLLLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGF 1055

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT 1021
            HGR+HITEV D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT
Sbjct: 1056 HGRVHITEVCDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLT 1113

Query: 1022 VS-EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
             S E+ +KL+  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQE
Sbjct: 1114 GSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQE 1173

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ--DGISD-KTVDISN-------DNMQT 1130
            FQ+RF +GKAV+G+VLS NKEKKLLR+VL  F   +G  D K ++I N       +N+  
Sbjct: 1174 FQKRFEVGKAVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIP 1233

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             IH+GD +GGRISKIL GVGGL+VQIGPHLYG+VHFTELK+  VSDPLSGY E       
Sbjct: 1234 HIHKGDTLGGRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHE------- 1286

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                GQFVKCKVLEI  + +GT HV+LSL SSL+GM S NS             +EKI++
Sbjct: 1287 ----GQFVKCKVLEIGHSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDN 1330

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L  +M+VQGYVKNVTSKGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLS
Sbjct: 1331 LHSDMLVQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLS 1390

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            VEPLS+RVEVTLKTS + +  +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VG
Sbjct: 1391 VEPLSRRVEVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVG 1450

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            LCH+SELS+DH+ NIET Y+AGE+V  KILKVD+E+ RISLGMK+SY K    N      
Sbjct: 1451 LCHISELSDDHISNIETKYKAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF--- 1507

Query: 1431 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD- 1489
                     V     S+ LEN+S  +Q++D+E ED    VL+Q+ESRAS+ PLEV+LDD 
Sbjct: 1508 ---------VDDTQLSTFLENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDV 1558

Query: 1490 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1549
               ++D+ + QN  +T+E  TIDEK+ R AKKK KEE+EQEIRAAEERL+  D PRT DE
Sbjct: 1559 NHSNLDDAVGQNHIYTNETNTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADE 1618

Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609
            FE+LVR SPNSSF+WIKYMA MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNL
Sbjct: 1619 FEKLVRGSPNSSFLWIKYMALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNL 1678

Query: 1610 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1669
            ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSC
Sbjct: 1679 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSC 1738

Query: 1670 KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1729
            KVWLRRVQ +LKQ Q+GVQ V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG
Sbjct: 1739 KVWLRRVQNVLKQHQDGVQPVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEG 1798

Query: 1730 ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1789
            +L EYPKRTDLWS+YLDQEIRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G
Sbjct: 1799 MLREYPKRTDLWSVYLDQEIRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQG 1858

Query: 1790 EEERIEYVKQKAMEYVESTLA 1810
            +EERIE VK+KAMEY  STLA
Sbjct: 1859 DEERIESVKRKAMEYANSTLA 1879

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297739784\|emb\|CBI29966.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356533079\|ref\|XP_003535096.1\| PREDICTED: protein RRP5 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449453908\|ref\|XP_004144698.1\| PREDICTED: protein RRP5 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|240255326\|ref\|NP_187803.4\| RNA binding protein [Arabidopsis thaliana] gi\|332641610\|gb\|AEE75131.1\| RNA binding protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|10998136\|dbj\|BAB03107.1\| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297833988\|ref\|XP_002884876.1\| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297330716\|gb\|EFH61135.1\| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|222636634\|gb\|EEE66766.1\| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242043296\|ref\|XP_002459519.1\| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor] gi\|241922896\|gb\|EER96040.1\| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|218199275\|gb\|EEC81702.1\| hypothetical protein OsI_25303 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1810
TAIR\|locus:2088644		1896	RRP5 "Ribosomal RNA Processing	0.799	0.763	0.579	0.0
RGD\|1304933		1876	Pdcd11 "programmed cell death	0.480	0.463	0.276	1.3e-149
MGI\|MGI:1341788		1862	Pdcd11 "programmed cell death	0.480	0.466	0.277	3e-149
UNIPROTKB\|G5E5C4		1874	PDCD11 "Protein RRP5 homolog"	0.690	0.667	0.267	3.9e-148
UNIPROTKB\|A7MB10		1874	PDCD11 "Protein RRP5 homolog"	0.690	0.667	0.266	5.3e-147
UNIPROTKB\|F1PLK8		1870	PDCD11 "Uncharacterized protei	0.690	0.668	0.260	4.9e-146
UNIPROTKB\|Q14690		1871	PDCD11 "Protein RRP5 homolog"	0.698	0.675	0.254	4.2e-144
UNIPROTKB\|F1S842		1859	LOC100157027 "Uncharacterized	0.691	0.673	0.257	1.1e-142
UNIPROTKB\|F1S843		1876	LOC100157027 "Uncharacterized	0.691	0.667	0.256	1.2e-142
UNIPROTKB\|F1P3T9		1841	PDCD11 "Uncharacterized protei	0.388	0.381	0.279	2.7e-135

TAIR\|locus:2088644 RRP5 "Ribosomal RNA Processing 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4222 (1491.3 bits), Expect = 0., P = 0.
 Identities = 867/1496 (57%), Positives = 1076/1496 (71%)

Query:   332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
             +KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIV
Sbjct:   433 FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIV 492

Query:   392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 451
             QF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL I
Sbjct:   493 QFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPI 552

Query:   452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
             LSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VV
Sbjct:   553 LSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVV 612

Query:   512 KCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSK 571
             KCR+ S++  ++RI L+  +K   +                             +K   K
Sbjct:   613 KCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAVIVRVK-----------SKSVVK 661

Query:   572 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 631
             GTI  EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI  A++LPSD 
Sbjct:   662 GTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDF 721

Query:   632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
             + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D  +AD+S++++VGQSVR+NI
Sbjct:   722 NQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 781

Query:   692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
             +DVN E  RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS    S+  WVE F IGS
Sbjct:   782 VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 841

Query:   752 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
             +I+G + E ND GVVV+F+  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDL
Sbjct:   842 LIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDL 901

Query:   812 SLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
             SL+   ++   +                  +L VHQ V+A+VEIVKE +LVLS+PE+ ++
Sbjct:   902 SLRPELLNNLTKEVSNSSKKKRKRGISK--ELEVHQRVSAVVEIVKEQHLVLSIPEHGYT 959

Query:   872 IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 931
             IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T+GRLLLLL ++            
Sbjct:   960 IGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRA 1019

Query:   932 XX-XXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
                   +VGS+V AEITEIKP ELR+ FG  F GRIHITEV  + ++  +  F+ F++GQ
Sbjct:  1020 KKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQ 1079

Query:   991 TVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
             +++AR++AK    D+KK+ LWELS+KP+ML   SE       E+ + + GQ V GYVYKV
Sbjct:  1080 SISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKV 1139

Query:  1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
             D EW  L +SR++ A++FILD++ +  EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV 
Sbjct:  1140 DKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQ 1199

Query:  1110 RPF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
             RP         +G   KT      I  D+   FIHEGDI+GGRISKIL GVGGL VQ+GP
Sbjct:  1200 RPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGP 1259

Query:  1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             +++GRVHFTE+ +  V  P         DPL G+ EGQFVKCKVLEIS + +GT+ +ELS
Sbjct:  1260 YVFGRVHFTEINDSWV--P---------DPLDGFREGQFVKCKVLEISSSSKGTWQIELS 1308

Query:  1219 LRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
             LR+SLDGMSS +  S DL  + D   K  E+IEDLSP+M VQGYVKN  SKGCFI+LSR 
Sbjct:  1309 LRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRT 1367

Query:  1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
             ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++    +SE  
Sbjct:  1368 VEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESY 1427

Query:  1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
             +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++  Y+AGE V+
Sbjct:  1428 DLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVR 1487

Query:  1397 VKILKVDKEKRRISLGMKSSYFKNDADNLQMXXXXXXXXXXXXXXXYNRSSLLENSSVAV 1456
              KILK+D+EK+RISLGMKSSY  N  D+                    +S +L     AV
Sbjct:  1488 AKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL----AAV 1543

Query:  1457 QDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDXX 1514
              D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+  SQNQ     A   D  
Sbjct:  1544 DDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEK 1600

Query:  1515 XXXXXXXXXXXXXXXXXXXXXXXXXXXDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
                                         AP   DEFE+LVRSSPNSSFVWIKYMAFMLS+
Sbjct:  1601 SKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSL 1660

Query:  1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
             AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDP
Sbjct:  1661 ADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDP 1720

Query:  1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRA 1694
             KKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+W            E +Q+VV RA
Sbjct:  1721 KKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRA 1780

Query:  1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754
             LL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+ 
Sbjct:  1781 LLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGED 1840

Query:  1755 DLIRGLFERAIXXXXXXXXXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
             D+IR LFERAI               +LEYEKSVG+EER+EYVKQ+AMEY  STLA
Sbjct:  1841 DVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006364 "rRNA processing" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

RGD\|1304933 Pdcd11 "programmed cell death 11" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1341788 Pdcd11 "programmed cell death 11" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G5E5C4 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A7MB10 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLK8 PDCD11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14690 PDCD11 "Protein RRP5 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S842 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S843 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P3T9 PDCD11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025446001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1799 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)	•	•	•	0.657
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)	•		•	0.641
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)	•	•	•	0.611
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)	•	•	•	0.599
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)	•	•	•	0.585
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)	•	•	•	0.580
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)	•		•	0.577
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)	•	•	•	0.568
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)	•			0.557
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)	•	•	•	0.541

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1810
cd05708		77	cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12:	8e-30
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	6e-28
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	5e-27
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	1e-25
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	3e-25
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	2e-24
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	2e-24
cd05694		74	cd05694, S1_Rrp5_repeat_hs2_sc2, S1_Rrp5_repeat_hs	2e-23
cd05698		70	cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs	4e-23
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	2e-22
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	4e-22
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	6e-22
cd05703		73	cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_h	1e-21
cd05695		66	cd05695, S1_Rrp5_repeat_hs3, S1_Rrp5_repeat_hs3: R	4e-21
PRK06676		390	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	1e-20
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	2e-18
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	3e-18
PRK00087		647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	3e-18
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	5e-18
cd05702		70	cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_h	6e-18
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	6e-17
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	9e-17
cd05693		100	cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs	1e-16
pfam00575		74	pfam00575, S1, S1 RNA binding domain	2e-16
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	9e-16
cd05707		68	cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11:	7e-15
cd05688		68	cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: R	9e-15
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	2e-14
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	2e-14
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	3e-14
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	1e-13
cd05692		69	cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R	1e-13
PRK13806		491	PRK13806, rpsA, 30S ribosomal protein S1; Provisio	1e-13
PRK11824		693	PRK11824, PRK11824, polynucleotide phosphorylase/p	2e-13
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	3e-13
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	6e-13
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	2e-12
PRK07899		486	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	2e-12
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	3e-12
COG1098		129	COG1098, VacB, Predicted RNA binding protein (cont	3e-12
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	4e-12
PRK08059		123	PRK08059, PRK08059, general stress protein 13; Val	4e-12
cd05698		70	cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs	1e-11
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	1e-11
cd00164		65	cd00164, S1_like, S1_like: Ribosomal protein S1-li	1e-11
cd00164		65	cd00164, S1_like, S1_like: Ribosomal protein S1-li	1e-11
cd05684		79	cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N	2e-11
PRK07400		318	PRK07400, PRK07400, 30S ribosomal protein S1; Revi	3e-11
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	7e-11
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	7e-11
cd04471		83	cd04471, S1_RNase_R, S1_RNase_R: RNase R C-termina	9e-11
PRK00087		647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	1e-10
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	2e-10
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	2e-10
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	3e-10
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	3e-10
PRK03987		262	PRK03987, PRK03987, translation initiation factor	3e-10
COG1093		269	COG1093, SUI2, Translation initiation factor 2, al	3e-10
cd04452		76	cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha sub	4e-10
COG1185		692	COG1185, Pnp, Polyribonucleotide nucleotidyltransf	5e-10
cd05690		69	cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: R	5e-10
PRK12269		863	PRK12269, PRK12269, bifunctional cytidylate kinase	6e-10
cd05697		69	cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R	6e-10
PRK12269		863	PRK12269, PRK12269, bifunctional cytidylate kinase	7e-10
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	1e-09
COG2183		780	COG2183, Tex, Transcriptional accessory protein [T	1e-09
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	2e-09
cd05697		69	cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R	2e-09
cd05685		68	cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain	2e-09
cd05708		77	cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12:	3e-09
TIGR02063		709	TIGR02063, RNase_R, ribonuclease R	5e-09
PRK13806		491	PRK13806, rpsA, 30S ribosomal protein S1; Provisio	6e-09
TIGR03591		684	TIGR03591, polynuc_phos, polyribonucleotide nucleo	6e-09
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	7e-09
PRK12269		863	PRK12269, PRK12269, bifunctional cytidylate kinase	7e-09
pfam00575		74	pfam00575, S1, S1 RNA binding domain	8e-09
PRK05807		136	PRK05807, PRK05807, hypothetical protein; Provisio	1e-08
PRK06676		390	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	2e-08
PRK13806		491	PRK13806, rpsA, 30S ribosomal protein S1; Provisio	2e-08
cd05691		73	cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R	2e-08
cd05698		70	cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs	3e-08
cd00164		65	cd00164, S1_like, S1_like: Ribosomal protein S1-li	3e-08
COG0539		541	COG0539, RpsA, Ribosomal protein S1 [Translation,	4e-08
COG2183		780	COG2183, Tex, Transcriptional accessory protein [T	5e-08
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	6e-08
cd04472		68	cd04472, S1_PNPase, S1_PNPase: Polynucleotide phos	7e-08
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	1e-07
cd05698		70	cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs	1e-07
PRK07899		486	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	1e-07
PRK07252		120	PRK07252, PRK07252, hypothetical protein; Provisio	1e-07
PRK00087		647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	2e-07
cd00164		65	cd00164, S1_like, S1_like: Ribosomal protein S1-li	2e-07
cd00164		65	cd00164, S1_like, S1_like: Ribosomal protein S1-li	2e-07
cd05696		71	cd05696, S1_Rrp5_repeat_hs4, S1_Rrp5_repeat_hs4: R	3e-07
PRK00087		647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	5e-07
PRK13806		491	PRK13806, rpsA, 30S ribosomal protein S1; Provisio	5e-07
cd05705		74	cd05705, S1_Rrp5_repeat_hs14, S1_Rrp5_repeat_hs14:	5e-07
COG0557		706	COG0557, VacB, Exoribonuclease R [Transcription]	5e-07
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	1e-06
PRK06676		390	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	2e-06
cd05693		100	cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs	2e-06
PRK13806		491	PRK13806, rpsA, 30S ribosomal protein S1; Provisio	2e-06
cd05686		73	cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-b	4e-06
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	5e-06
COG5107		660	COG5107, RNA14, Pre-mRNA 3'-end processing (cleava	6e-06
PRK12269		863	PRK12269, PRK12269, bifunctional cytidylate kinase	7e-06
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	9e-06
PRK00087		647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	9e-06
cd05689		72	cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: R	9e-06
pfam00575		74	pfam00575, S1, S1 RNA binding domain	1e-05
PLN00207		891	PLN00207, PLN00207, polyribonucleotide nucleotidyl	1e-05
pfam00575		74	pfam00575, S1, S1 RNA binding domain	3e-05
cd05691		73	cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R	3e-05
PRK06676		390	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	4e-05
cd05703		73	cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_h	5e-05
cd05685		68	cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain	5e-05
pfam00575		74	pfam00575, S1, S1 RNA binding domain	6e-05
PRK13806		491	PRK13806, rpsA, 30S ribosomal protein S1; Provisio	6e-05
PRK12269		863	PRK12269, PRK12269, bifunctional cytidylate kinase	7e-05
cd05706		73	cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10:	7e-05
PRK11642		813	PRK11642, PRK11642, exoribonuclease R; Provisional	8e-05
cd05789		86	cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-bindin	8e-05
COG1098		129	COG1098, VacB, Predicted RNA binding protein (cont	9e-05
cd05704		72	cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13:	9e-05
cd05697		69	cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R	1e-04
cd05698		70	cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs	2e-04
cd05707		68	cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11:	2e-04
PRK08582		139	PRK08582, PRK08582, hypothetical protein; Provisio	2e-04
cd05707		68	cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11:	5e-04
cd05707		68	cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11:	5e-04
cd05692		69	cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R	5e-04
TIGR00358		654	TIGR00358, 3_prime_RNase, VacB and RNase II family	5e-04
PRK06299		565	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	6e-04
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	6e-04
PRK07899		486	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	6e-04
cd05702		70	cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_h	8e-04
COG1185		692	COG1185, Pnp, Polyribonucleotide nucleotidyltransf	8e-04
pfam05843		271	pfam05843, Suf, Suppressor of forked protein (Suf)	9e-04
smart00316		72	smart00316, S1, Ribosomal protein S1-like RNA-bind	0.001
COG1098		129	COG1098, VacB, Predicted RNA binding protein (cont	0.001
cd05697		69	cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R	0.001
PRK04163		235	PRK04163, PRK04163, exosome complex RNA-binding pr	0.001
TIGR00717		516	TIGR00717, rpsA, ribosomal protein S1	0.002
PRK06676		390	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	0.002
PRK06676		390	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	0.002
cd05706		73	cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10:	0.002
cd05707		68	cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11:	0.003
PRK12269		863	PRK12269, PRK12269, bifunctional cytidylate kinase	0.003
cd05706		73	cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10:	0.003
cd05706		73	cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10:	0.003
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	0.004
cd04461		83	cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs	0.004
pfam00575		74	pfam00575, S1, S1 RNA binding domain	0.004

>gnl\|CDD\|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

 Score =  113 bits (284), Expect = 8e-30
 Identities = 40/77 (51%), Positives = 59/77 (76%)

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
             VG  + G ++RVE YG+FI I+ TN+ GLCH SE+S++ V +   ++R G+KV+ K+LK
Sbjct: 1    KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60

Query: 1402 VDKEKRRISLGMKSSYF 1418
            +D EK+RISLG+K+SYF
Sbjct: 61   IDAEKKRISLGLKASYF 77

Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 77

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|240199 cd05694, S1_Rrp5_repeat_hs2_sc2, S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240208 cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240200 cd05695, S1_Rrp5_repeat_hs3, S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240207 cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|240198 cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|216000 pfam00575, S1, S1 RNA binding domain	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240193 cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|181215 PRK08059, PRK08059, general stress protein 13; Validated	Back alignment and domain information

>gnl\|CDD\|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|240189 cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide	Back alignment and domain information

>gnl\|CDD\|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|239917 cd04471, S1_RNase_R, S1_RNase_R: RNase R C-terminal S1 domain	Back alignment and domain information

>gnl\|CDD\|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|235188 PRK03987, PRK03987, translation initiation factor IF-2 subunit alpha; Validated	Back alignment and domain information

>gnl\|CDD\|224018 COG1093, SUI2, Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|239899 cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240195 cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|225094 COG2183, Tex, Transcriptional accessory protein [Transcription]	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa	Back alignment and domain information

>gnl\|CDD\|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|233703 TIGR02063, RNase_R, ribonuclease R	Back alignment and domain information

>gnl\|CDD\|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|216000 pfam00575, S1, S1 RNA binding domain	Back alignment and domain information

>gnl\|CDD\|235614 PRK05807, PRK05807, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|225094 COG2183, Tex, Transcriptional accessory protein [Transcription]	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|239918 cd04472, S1_PNPase, S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|180908 PRK07252, PRK07252, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|240201 cd05696, S1_Rrp5_repeat_hs4, S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|240210 cd05705, S1_Rrp5_repeat_hs14, S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|223631 COG0557, VacB, Exoribonuclease R [Transcription]	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|240198 cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|240191 cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|240194 cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|216000 pfam00575, S1, S1 RNA binding domain	Back alignment and domain information

>gnl\|CDD\|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|216000 pfam00575, S1, S1 RNA binding domain	Back alignment and domain information

>gnl\|CDD\|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|240208 cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa	Back alignment and domain information

>gnl\|CDD\|216000 pfam00575, S1, S1 RNA binding domain	Back alignment and domain information

>gnl\|CDD\|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|236944 PRK11642, PRK11642, exoribonuclease R; Provisional	Back alignment and domain information

>gnl\|CDD\|240215 cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240209 cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|236305 PRK08582, PRK08582, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>gnl\|CDD\|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases	Back alignment and domain information

>gnl\|CDD\|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|240207 cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|218774 pfam05843, Suf, Suppressor of forked protein (Suf)	Back alignment and domain information

>gnl\|CDD\|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|235233 PRK04163, PRK04163, exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>gnl\|CDD\|233102 TIGR00717, rpsA, ribosomal protein S1	Back alignment and domain information

>gnl\|CDD\|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>gnl\|CDD\|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>gnl\|CDD\|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>gnl\|CDD\|216000 pfam00575, S1, S1 RNA binding domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1810
KOG1070		1710	consensus rRNA processing protein Rrp5 [RNA proces	100.0
KOG1070		1710	consensus rRNA processing protein Rrp5 [RNA proces	100.0
COG0539		541	RpsA Ribosomal protein S1 [Translation, ribosomal	100.0
COG0539		541	RpsA Ribosomal protein S1 [Translation, ribosomal	100.0
PRK12269		863	bifunctional cytidylate kinase/ribosomal protein S	100.0
PRK06299		565	rpsA 30S ribosomal protein S1; Reviewed	100.0
PRK12269		863	bifunctional cytidylate kinase/ribosomal protein S	100.0
TIGR00717		516	rpsA ribosomal protein S1. This model provides tru	100.0
PRK06299		565	rpsA 30S ribosomal protein S1; Reviewed	100.0
TIGR00717		516	rpsA ribosomal protein S1. This model provides tru	100.0
PRK13806		491	rpsA 30S ribosomal protein S1; Provisional	100.0
PRK13806		491	rpsA 30S ribosomal protein S1; Provisional	100.0
PRK07899		486	rpsA 30S ribosomal protein S1; Reviewed	100.0
PRK07899		486	rpsA 30S ribosomal protein S1; Reviewed	100.0
PRK06676		390	rpsA 30S ribosomal protein S1; Reviewed	100.0
PRK06676		390	rpsA 30S ribosomal protein S1; Reviewed	100.0
PRK00087		647	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
PRK00087		647	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
PRK07400		318	30S ribosomal protein S1; Reviewed	100.0
PRK07400		318	30S ribosomal protein S1; Reviewed	99.98
KOG1915		677	consensus Cell cycle control protein (crooked neck	99.91
KOG1915		677	consensus Cell cycle control protein (crooked neck	99.9
KOG0495		913	consensus HAT repeat protein [RNA processing and m	99.86
KOG0495		913	consensus HAT repeat protein [RNA processing and m	99.82
KOG2047		835	consensus mRNA splicing factor [RNA processing and	99.77
KOG2047		835	consensus mRNA splicing factor [RNA processing and	99.73
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	99.7
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	99.69
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	99.67
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	99.66
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	99.66
COG2996		287	Predicted RNA-bindining protein (contains S1 and H	99.66
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	99.66
PRK11788		389	tetratricopeptide repeat protein; Provisional	99.65
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
PTZ00248		319	eukaryotic translation initiation factor 2 subunit	99.58
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.58
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	99.57
PF05843		280	Suf: Suppressor of forked protein (Suf); InterPro:	99.57
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.57
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	99.57
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	99.56
COG1098		129	VacB Predicted RNA binding protein (contains ribos	99.55
KOG1914		656	consensus mRNA cleavage and polyadenylation factor	99.54
COG2996		287	Predicted RNA-bindining protein (contains S1 and H	99.54
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	99.53
PRK11788		389	tetratricopeptide repeat protein; Provisional	99.5
COG1098		129	VacB Predicted RNA binding protein (contains ribos	99.49
KOG1126		638	consensus DNA-binding cell division cycle control	99.49
KOG0547		606	consensus Translocase of outer mitochondrial membr	99.47
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.47
PRK12370		553	invasion protein regulator; Provisional	99.45
KOG1155		559	consensus Anaphase-promoting complex (APC), Cdc23	99.44
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	99.43
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
KOG0547		606	consensus Translocase of outer mitochondrial membr	99.43
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.41
PTZ00248		319	eukaryotic translation initiation factor 2 subunit	99.41
KOG2076		895	consensus RNA polymerase III transcription factor	99.4
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	99.4
cd05705		74	S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a	99.4
KOG1155		559	consensus Anaphase-promoting complex (APC), Cdc23	99.4
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	99.4
PRK12370		553	invasion protein regulator; Provisional	99.39
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	99.38
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	99.37
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	99.37
cd05705		74	S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a	99.37
PLN03218		1060	maturation of RBCL 1; Provisional	99.36
cd05693		100	S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp	99.35
cd05694		74	S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp	99.35
cd05694		74	S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp	99.33
KOG1258		577	consensus mRNA processing protein [RNA processing	99.33
KOG1126		638	consensus DNA-binding cell division cycle control	99.32
PF05843		280	Suf: Suppressor of forked protein (Suf); InterPro:	99.32
cd05703		73	S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R	99.32
cd04461		83	S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp	99.31
cd05703		73	S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R	99.3
PLN03218		1060	maturation of RBCL 1; Provisional	99.3
KOG1914		656	consensus mRNA cleavage and polyadenylation factor	99.29
PRK11189		296	lipoprotein NlpI; Provisional	99.27
cd05698		70	S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp	99.27
PF00575		74	S1: S1 RNA binding domain; InterPro: IPR003029 Rib	99.26
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	99.24
cd05704		72	S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a	99.23
KOG2396		568	consensus HAT (Half-A-TPR) repeat-containing prote	99.22
cd05704		72	S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a	99.22
cd05696		71	S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t	99.21
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	99.21
PF00575		74	S1: S1 RNA binding domain; InterPro: IPR003029 Rib	99.21
cd05706		73	S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a	99.19
cd05706		73	S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a	99.19
cd05686		73	S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom	99.19
cd05697		69	S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t	99.19
cd05696		71	S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t	99.19
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	99.18
cd05707		68	S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a	99.18
cd04461		83	S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp	99.18
PRK11189		296	lipoprotein NlpI; Provisional	99.18
cd05698		70	S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp	99.17
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	99.17
cd05697		69	S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t	99.17
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	99.16
cd05708		77	S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a	99.16
PRK08582		139	hypothetical protein; Provisional	99.16
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	99.14
COG5107		660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.14
PRK07252		120	hypothetical protein; Provisional	99.13
PRK08582		139	hypothetical protein; Provisional	99.12
cd05707		68	S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a	99.12
cd05693		100	S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp	99.11
KOG1258		577	consensus mRNA processing protein [RNA processing	99.1
cd04452		76	S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr	99.1
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	99.09
cd05708		77	S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a	99.08
cd05690		69	S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p	99.08
PRK07252		120	hypothetical protein; Provisional	99.08
cd05686		73	S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom	99.08
cd04452		76	S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr	99.08
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	99.07
cd05690		69	S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p	99.06
cd05695		66	S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t	99.05
COG5107		660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.05
KOG1129		478	consensus TPR repeat-containing protein [General f	99.05
cd05691		73	S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p	99.04
PRK05807		136	hypothetical protein; Provisional	99.03
cd05689		72	S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p	99.03
PLN03077		857	Protein ECB2; Provisional	99.02
KOG1129		478	consensus TPR repeat-containing protein [General f	99.02
PLN02789		320	farnesyltranstransferase	99.01
cd05695		66	S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t	99.0
PLN03077		857	Protein ECB2; Provisional	99.0
cd05689		72	S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p	99.0
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	99.0
cd05691		73	S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p	98.99
cd05687		70	S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib	98.98
KOG2076		895	consensus RNA polymerase III transcription factor	98.98
KOG1125		579	consensus TPR repeat-containing protein [General f	98.97
PRK05807		136	hypothetical protein; Provisional	98.97
cd05687		70	S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib	98.97
KOG1125		579	consensus TPR repeat-containing protein [General f	98.97
PRK08059		123	general stress protein 13; Validated	98.95
PRK14574		822	hmsH outer membrane protein; Provisional	98.95
PRK08059		123	general stress protein 13; Validated	98.95
cd05692		69	S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p	98.95
cd05684		79	S1_DHX8_helicase S1_DHX8_helicase: The N-terminal	98.94
cd04465		67	S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib	98.94
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	98.92
PHA02945		88	interferon resistance protein; Provisional	98.92
cd05692		69	S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p	98.92
PLN02789		320	farnesyltranstransferase	98.92
cd05684		79	S1_DHX8_helicase S1_DHX8_helicase: The N-terminal	98.91
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	98.91
KOG0128		881	consensus RNA-binding protein SART3 (RRM superfami	98.9
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	98.9
cd05685		68	S1_Tex S1_Tex: The C-terminal S1 domain of a trans	98.9
cd05685		68	S1_Tex S1_Tex: The C-terminal S1 domain of a trans	98.88
KOG2003		840	consensus TPR repeat-containing protein [General f	98.88
PRK15359		144	type III secretion system chaperone protein SscB;	98.88
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.87
KOG1128		777	consensus Uncharacterized conserved protein, conta	98.86
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	98.85
cd04465		67	S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib	98.85
PHA02945		88	interferon resistance protein; Provisional	98.85
KOG3060		289	consensus Uncharacterized conserved protein [Funct	98.85
cd04472		68	S1_PNPase S1_PNPase: Polynucleotide phosphorylase	98.84
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.83
KOG4162		799	consensus Predicted calmodulin-binding protein [Si	98.82
cd05699		72	S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t	98.8
cd05789		86	S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain.	98.8
cd05688		68	S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p	98.8
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	98.79
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	98.79
KOG1174		564	consensus Anaphase-promoting complex (APC), subuni	98.79
PRK14574		822	hmsH outer membrane protein; Provisional	98.78
cd04472		68	S1_PNPase S1_PNPase: Polynucleotide phosphorylase	98.78
smart00316		72	S1 Ribosomal protein S1-like RNA-binding domain.	98.78
KOG0128		881	consensus RNA-binding protein SART3 (RRM superfami	98.78
PRK10370		198	formate-dependent nitrite reductase complex subuni	98.77
KOG2003		840	consensus TPR repeat-containing protein [General f	98.76
cd05688		68	S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p	98.76
COG1093		269	SUI2 Translation initiation factor 2, alpha subuni	98.76
cd04471		83	S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai	98.76
PRK10370		198	formate-dependent nitrite reductase complex subuni	98.76
KOG1128		777	consensus Uncharacterized conserved protein, conta	98.75
KOG1174		564	consensus Anaphase-promoting complex (APC), subuni	98.75
smart00316		72	S1 Ribosomal protein S1-like RNA-binding domain.	98.75
cd05789		86	S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain.	98.74
COG2183		780	Tex Transcriptional accessory protein [Transcripti	98.73
cd04453		88	S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik	98.73
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	98.73
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	98.72
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	98.72
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	98.72
PRK03987		262	translation initiation factor IF-2 subunit alpha;	98.7
KOG3060		289	consensus Uncharacterized conserved protein [Funct	98.69
COG2183		780	Tex Transcriptional accessory protein [Transcripti	98.69
COG1093		269	SUI2 Translation initiation factor 2, alpha subuni	98.68
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	98.68
cd04473		77	S1_RecJ_like S1_RecJ_like: The S1 domain of the ar	98.67
cd04473		77	S1_RecJ_like S1_RecJ_like: The S1 domain of the ar	98.67
cd04471		83	S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai	98.66
TIGR02552		135	LcrH_SycD type III secretion low calcium response	98.66
cd04453		88	S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik	98.66
PRK15359		144	type III secretion system chaperone protein SscB;	98.66
PRK09521		189	exosome complex RNA-binding protein Csl4; Provisio	98.65
PRK03987		262	translation initiation factor IF-2 subunit alpha;	98.64
cd05702		70	S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R	98.63
cd05702		70	S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R	98.62
COG3071		400	HemY Uncharacterized enzyme of heme biosynthesis [	98.62
cd04454		82	S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-	98.62
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	98.6
KOG4162		799	consensus Predicted calmodulin-binding protein [Si	98.59
cd04454		82	S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-	98.56
cd00164		65	S1_like S1_like: Ribosomal protein S1-like RNA-bin	98.56
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	98.55
TIGR02552		135	LcrH_SycD type III secretion low calcium response	98.55
PRK14720		906	transcript cleavage factor/unknown domain fusion p	98.54
KOG1156		700	consensus N-terminal acetyltransferase [Chromatin	98.54
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	98.51
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	98.49
PF12569		517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.49
cd00164		65	S1_like S1_like: Ribosomal protein S1-like RNA-bin	98.47
PRK14720		906	transcript cleavage factor/unknown domain fusion p	98.46
COG4783		484	Putative Zn-dependent protease, contains TPR repea	98.45
COG3071		400	HemY Uncharacterized enzyme of heme biosynthesis [	98.42
PRK09521		189	exosome complex RNA-binding protein Csl4; Provisio	98.42
cd05699		72	S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t	98.41
cd04460		99	S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain.	98.4
KOG1127		1238	consensus TPR repeat-containing protein [RNA proce	98.37
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	98.37
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	98.37
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	98.35
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	98.3
PF12569		517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.3
COG4783		484	Putative Zn-dependent protease, contains TPR repea	98.3
COG4700		251	Uncharacterized protein conserved in bacteria cont	98.29
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	98.29
KOG2396		568	consensus HAT (Half-A-TPR) repeat-containing prote	98.27
PF08424		321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.26
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	98.25
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.23
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	98.22
KOG1156		700	consensus N-terminal acetyltransferase [Chromatin	98.21
COG4235		287	Cytochrome c biogenesis factor [Posttranslational	98.21
cd04460		99	S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain.	98.2
PRK10866		243	outer membrane biogenesis protein BamD; Provisiona	98.2
PRK09202		470	nusA transcription elongation factor NusA; Validat	98.18
KOG0553		304	consensus TPR repeat-containing protein [General f	98.17
cd04455		67	S1_NusA S1_NusA: N-utilizing substance A protein (	98.17
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	98.17
PF08424		321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.17
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	98.15
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.15
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.14
KOG0548		539	consensus Molecular co-chaperone STI1 [Posttransla	98.14
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.13
cd04455		67	S1_NusA S1_NusA: N-utilizing substance A protein (	98.11
PRK04841		903	transcriptional regulator MalT; Provisional	98.11
PRK09202		470	nusA transcription elongation factor NusA; Validat	98.09
PRK15363		157	pathogenicity island 2 chaperone protein SscA; Pro	98.08
COG1095		183	RPB7 DNA-directed RNA polymerase, subunit E' [Tran	98.06
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	98.05
TIGR00448		179	rpoE DNA-directed RNA polymerase (rpoE), archaeal	98.05
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.05
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.04
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.04
KOG1127		1238	consensus TPR repeat-containing protein [RNA proce	98.01
COG4235		287	Cytochrome c biogenesis factor [Posttranslational	98.01
TIGR02063		709	RNase_R ribonuclease R. This family consists of an	97.96
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.93
KOG1067		760	consensus Predicted RNA-binding polyribonucleotide	97.92
COG3898		531	Uncharacterized membrane-bound protein [Function u	97.91
PRK10803		263	tol-pal system protein YbgF; Provisional	97.91
PRK04841		903	transcriptional regulator MalT; Provisional	97.91
KOG0553		304	consensus TPR repeat-containing protein [General f	97.9
TIGR00448		179	rpoE DNA-directed RNA polymerase (rpoE), archaeal	97.9
KOG2376		652	consensus Signal recognition particle, subunit Srp	97.86
cd05791		92	S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain.	97.86
PRK11642		813	exoribonuclease R; Provisional	97.86
KOG2376		652	consensus Signal recognition particle, subunit Srp	97.85
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	97.85
KOG0548		539	consensus Molecular co-chaperone STI1 [Posttransla	97.84
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	97.82
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.82
PRK11906		458	transcriptional regulator; Provisional	97.81
PRK15363		157	pathogenicity island 2 chaperone protein SscA; Pro	97.79
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.79
PRK10153		517	DNA-binding transcriptional activator CadC; Provis	97.79
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.79
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	97.78
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	97.77
TIGR02063		709	RNase_R ribonuclease R. This family consists of an	97.77
TIGR00358		654	3_prime_RNase VacB and RNase II family 3'-5' exori	97.76
cd05791		92	S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain.	97.76
PRK11906		458	transcriptional regulator; Provisional	97.75
PRK10803		263	tol-pal system protein YbgF; Provisional	97.74
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.73
PRK08563		187	DNA-directed RNA polymerase subunit E'; Provisiona	97.73
TIGR01953		341	NusA transcription termination factor NusA. This m	97.73
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.72
KOG0543		397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.71
PF04733		290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.71
KOG2053		932	consensus Mitochondrial inheritance and actin cyto	97.7
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.69
COG0457		291	NrfG FOG: TPR repeat [General function prediction	97.69
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	97.68
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	97.68
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.68
TIGR01953		341	NusA transcription termination factor NusA. This m	97.68
KOG3785		557	consensus Uncharacterized conserved protein [Funct	97.68
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.62
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	97.62
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.62
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.6
COG5191		435	Uncharacterized conserved protein, contains HAT (H	97.6
KOG1067		760	consensus Predicted RNA-binding polyribonucleotide	97.59
PRK12327		362	nusA transcription elongation factor NusA; Provisi	97.58
PRK10153		517	DNA-binding transcriptional activator CadC; Provis	97.57
COG5191		435	Uncharacterized conserved protein, contains HAT (H	97.57
COG0457		291	NrfG FOG: TPR repeat [General function prediction	97.56
KOG3785		557	consensus Uncharacterized conserved protein [Funct	97.56
PRK11642		813	exoribonuclease R; Provisional	97.53
PF12688		120	TPR_5: Tetratrico peptide repeat	97.52
COG1095		183	RPB7 DNA-directed RNA polymerase, subunit E' [Tran	97.51
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.5
PF04733		290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.48
PHA02858		86	EIF2a-like PKR inhibitor; Provisional	97.48
TIGR00358		654	3_prime_RNase VacB and RNase II family 3'-5' exori	97.47
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.45
PRK08563		187	DNA-directed RNA polymerase subunit E'; Provisiona	97.43
COG4105		254	ComL DNA uptake lipoprotein [General function pred	97.39
KOG0543		397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.37
PRK12327		362	nusA transcription elongation factor NusA; Provisi	97.34
COG4700		251	Uncharacterized protein conserved in bacteria cont	97.33
cd04462		88	S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly	97.3
KOG3081		299	consensus Vesicle coat complex COPI, epsilon subun	97.29
COG1729		262	Uncharacterized protein conserved in bacteria [Fun	97.29
PRK10866		243	outer membrane biogenesis protein BamD; Provisiona	97.27
PF13371		73	TPR_9: Tetratricopeptide repeat	97.19
PF08311		126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	97.17
KOG4234		271	consensus TPR repeat-containing protein [General f	97.16
PF13428		44	TPR_14: Tetratricopeptide repeat	97.13
cd05700		65	S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a t	97.1
cd05701		69	S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a	97.06
PF13371		73	TPR_9: Tetratricopeptide repeat	97.04
PHA02858		86	EIF2a-like PKR inhibitor; Provisional	97.01
KOG4648		536	consensus Uncharacterized conserved protein, conta	96.99
COG1107		715	Archaea-specific RecJ-like exonuclease, contains D	96.95
PF08311		126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	96.95
PRK15331		165	chaperone protein SicA; Provisional	96.94
KOG1585		308	consensus Protein required for fusion of vesicles	96.93
PRK05054		644	exoribonuclease II; Provisional	96.92
cd04462		88	S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly	96.9
PF13512		142	TPR_18: Tetratricopeptide repeat	96.89
PF12688		120	TPR_5: Tetratrico peptide repeat	96.87
PF13512		142	TPR_18: Tetratricopeptide repeat	96.87
COG1096		188	Predicted RNA-binding protein (consists of S1 doma	96.83
PTZ00162		176	DNA-directed RNA polymerase II subunit 7; Provisio	96.69
KOG1464		440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.65
KOG2053		932	consensus Mitochondrial inheritance and actin cyto	96.58
COG1729		262	Uncharacterized protein conserved in bacteria [Fun	96.57
KOG4555		175	consensus TPR repeat-containing protein [Function	96.56
PF10447		82	EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I	96.56
COG3898		531	Uncharacterized membrane-bound protein [Function u	96.54
PRK15331		165	chaperone protein SicA; Provisional	96.54
COG4105		254	ComL DNA uptake lipoprotein [General function pred	96.53
COG4785		297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.51
KOG3081		299	consensus Vesicle coat complex COPI, epsilon subun	96.48
PRK12328		374	nusA transcription elongation factor NusA; Provisi	96.46
PLN03098		453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.42
KOG1856		1299	consensus Transcription elongation factor SPT6 [RN	96.41
PF06552		186	TOM20_plant: Plant specific mitochondrial import r	96.39
KOG4555		175	consensus TPR repeat-containing protein [Function	96.38
PF13428		44	TPR_14: Tetratricopeptide repeat	96.34
COG1097		239	RRP4 RNA-binding protein Rrp4 and related proteins	96.34
KOG2916		304	consensus Translation initiation factor 2, alpha s	96.31
KOG1586		288	consensus Protein required for fusion of vesicles	96.31
PLN03098		453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.27
KOG4340		459	consensus Uncharacterized conserved protein [Funct	96.24
KOG1941		518	consensus Acetylcholine receptor-associated protei	96.23
COG1097		239	RRP4 RNA-binding protein Rrp4 and related proteins	96.22
KOG4234		271	consensus TPR repeat-containing protein [General f	96.19
PF08631		278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.15
COG1107		715	Archaea-specific RecJ-like exonuclease, contains D	96.12
PRK05054		644	exoribonuclease II; Provisional	96.12
TIGR02062		639	RNase_B exoribonuclease II. This family consists o	96.06
COG0557		706	VacB Exoribonuclease R [Transcription]	96.05
PTZ00162		176	DNA-directed RNA polymerase II subunit 7; Provisio	96.01
TIGR00757		414	RNaseEG ribonuclease, Rne/Rng family. The C-termin	95.99
cd05790		86	S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai	95.97
smart00386		33	HAT HAT (Half-A-TPR) repeats. Present in several R	95.94
PF13509		61	S1_2: S1 domain; PDB: 3GO5_A.	95.9
cd05790		86	S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai	95.87
PF13509		61	S1_2: S1 domain; PDB: 3GO5_A.	95.84
COG4785		297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.83
COG1096		188	Predicted RNA-binding protein (consists of S1 doma	95.78
COG3118		304	Thioredoxin domain-containing protein [Posttransla	95.75
KOG2916		304	consensus Translation initiation factor 2, alpha s	95.7
PRK12328		374	nusA transcription elongation factor NusA; Provisi	95.7
TIGR00757		414	RNaseEG ribonuclease, Rne/Rng family. The C-termin	95.65
KOG3616		1636	consensus Selective LIM binding factor [Transcript	95.65
PF02259		352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.64
KOG1856		1299	consensus Transcription elongation factor SPT6 [RN	95.61
smart00777		125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	95.59
KOG2471		696	consensus TPR repeat-containing protein [General f	95.51
PF13431		34	TPR_17: Tetratricopeptide repeat	95.51
KOG1941		518	consensus Acetylcholine receptor-associated protei	95.49
PF10447		82	EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I	95.45
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.35
PF03704		146	BTAD: Bacterial transcriptional activator domain;	95.3
TIGR02062		639	RNase_B exoribonuclease II. This family consists o	95.27
KOG4340		459	consensus Uncharacterized conserved protein [Funct	95.2
KOG2041		1189	consensus WD40 repeat protein [General function pr	95.19
smart00777		125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	95.18
KOG1586		288	consensus Protein required for fusion of vesicles	95.13
KOG1464		440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.07
COG3118		304	Thioredoxin domain-containing protein [Posttransla	94.98
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.9
KOG2796		366	consensus Uncharacterized conserved protein [Funct	94.88
PF13431		34	TPR_17: Tetratricopeptide repeat	94.83
COG0557		706	VacB Exoribonuclease R [Transcription]	94.78
PF04184		539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.75
PF10300		468	DUF3808: Protein of unknown function (DUF3808); In	94.58
PF02184		32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	94.56
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	94.52
KOG1585		308	consensus Protein required for fusion of vesicles	94.45
KOG4648		536	consensus Uncharacterized conserved protein, conta	94.42
KOG2796		366	consensus Uncharacterized conserved protein [Funct	94.42
PRK12329		449	nusA transcription elongation factor NusA; Provisi	94.32
PF13281		374	DUF4071: Domain of unknown function (DUF4071)	94.28
PF02184		32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	94.26
PF02259		352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.25
PF04184		539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.19
PRK12329		449	nusA transcription elongation factor NusA; Provisi	94.09
KOG3616		1636	consensus Selective LIM binding factor [Transcript	94.05
PF06552		186	TOM20_plant: Plant specific mitochondrial import r	94.0
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.8
KOG2610		491	consensus Uncharacterized conserved protein [Funct	93.79
KOG0890		2382	consensus Protein kinase of the PI-3 kinase family	93.71
PF10300		468	DUF3808: Protein of unknown function (DUF3808); In	93.68
KOG4642		284	consensus Chaperone-dependent E3 ubiquitin protein	93.34
KOG0985		1666	consensus Vesicle coat protein clathrin, heavy cha	93.1
smart00386		33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.06
PF13281		374	DUF4071: Domain of unknown function (DUF4071)	93.06
KOG0545		329	consensus Aryl-hydrocarbon receptor-interacting pr	92.97
PF04910		360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.64
PF03704		146	BTAD: Bacterial transcriptional activator domain;	92.34
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.19
PF00515		34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.64
PRK10811		1068	rne ribonuclease E; Reviewed	91.42
PF00515		34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.37
PF08631		278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.2
PRK10811		1068	rne ribonuclease E; Reviewed	91.16
PF13174		33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.0
PF10345		608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.97
KOG3824		472	consensus Huntingtin interacting protein HYPE [Gen	90.92
COG2909		894	MalT ATP-dependent transcriptional regulator [Tran	90.91
COG2909		894	MalT ATP-dependent transcriptional regulator [Tran	90.8
KOG2610		491	consensus Uncharacterized conserved protein [Funct	90.68
KOG0545		329	consensus Aryl-hydrocarbon receptor-interacting pr	90.42
KOG0530		318	consensus Protein farnesyltransferase, alpha subun	90.22
COG1747		711	Uncharacterized N-terminal domain of the transcrip	90.07
KOG4642		284	consensus Chaperone-dependent E3 ubiquitin protein	89.92
KOG0985		1666	consensus Vesicle coat protein clathrin, heavy cha	89.82
COG2976		207	Uncharacterized protein conserved in bacteria [Fun	89.28
KOG0530		318	consensus Protein farnesyltransferase, alpha subun	89.17
KOG0376		476	consensus Serine-threonine phosphatase 2A, catalyt	89.1
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	89.01
KOG3298		170	consensus DNA-directed RNA polymerase subunit E' [	88.93
KOG2471		696	consensus TPR repeat-containing protein [General f	88.91
KOG1308		377	consensus Hsp70-interacting protein Hip/Transient	88.76
PRK11712		489	ribonuclease G; Provisional	88.74
PRK11712		489	ribonuclease G; Provisional	87.99
PF10602		177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.78
KOG2422		665	consensus Uncharacterized conserved protein [Funct	87.77
PF04910		360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.67
PF08292		122	RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I	87.47
KOG3409		193	consensus Exosomal 3'-5' exoribonuclease complex,	87.46
PF10345		608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.45
PF11207		203	DUF2989: Protein of unknown function (DUF2989); In	87.44
COG4649		221	Uncharacterized protein conserved in bacteria [Fun	87.3
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	87.17
PF13181		34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.79
PF13174		33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.77
KOG3298		170	consensus DNA-directed RNA polymerase subunit E' [	86.67
PF10246		104	MRP-S35: Mitochondrial ribosomal protein MRP-S35;	86.43
PF10602		177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.4
PF10246		104	MRP-S35: Mitochondrial ribosomal protein MRP-S35;	86.31
PF08292		122	RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I	86.18
KOG2422		665	consensus Uncharacterized conserved protein [Funct	85.67
KOG3409		193	consensus Exosomal 3'-5' exoribonuclease complex,	85.57
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.89
COG2976		207	Uncharacterized protein conserved in bacteria [Fun	84.76
KOG2300		629	consensus Uncharacterized conserved protein [Funct	84.53
KOG0890		2382	consensus Protein kinase of the PI-3 kinase family	84.36
KOG2300		629	consensus Uncharacterized conserved protein [Funct	84.3
KOG0687		393	consensus 26S proteasome regulatory complex, subun	83.83
KOG1308		377	consensus Hsp70-interacting protein Hip/Transient	83.66

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=1e-176  Score=1628.92  Aligned_cols=1540  Identities=38%  Similarity=0.576  Sum_probs=1262.1

Q ss_pred             CCCCCcCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCChhccccccccccCCCCCcccCCCEEEEEEEEeecccc
Q 000236            1 MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK   80 (1810)
Q Consensus         1 ~~~~~l~~G~~~lg~V~~i~~~~~~v~lp~~l~g~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~~~   80 (1810)
                      ++|++++|||++||+|++|+..|+.+|+|++|+|+|+.+++|+.                                    
T Consensus       109 ~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~~------------------------------------  152 (1710)
T KOG1070|consen  109 FQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSDE------------------------------------  152 (1710)
T ss_pred             ccccccCCcceeeeeeeeccccceeEEccCcccccccccccCHh------------------------------------
Confidence            47899999999999999999999999999999999999999988                                    


Q ss_pred             ccCeeEEEEEechhhhccCCCcccccCCcEEEEEEEEEecceEEEEeCCCcceecccCCCCCCCCCCccCCCcEEEEEEE
Q 000236           81 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR  160 (1810)
Q Consensus        81 ~~~~~~~~LS~~p~~vn~~l~~~~l~~g~~l~~~V~sved~G~i~d~G~~~~~gfl~~~~~~~~~~~~~~~G~~~~~~v~  160 (1810)
                                             .+.+||.|.+.|.|+||||+++|+|+...+||+.+.++. +.+..|++||+++|+|+
T Consensus       153 -----------------------~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~p-n~~~~lKvGq~l~~~V~  208 (1710)
T KOG1070|consen  153 -----------------------MLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFP-NLGAKLKVGQWLRVSVT  208 (1710)
T ss_pred             -----------------------HhhhhhhhccccccccccccchhcCCccccchhhhccCc-hhhhhcccCceEEEEEE
Confidence                                   233688999999999999999999999999999999874 33347999999999999


Q ss_pred             EEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccc
Q 000236          161 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN  240 (1810)
Q Consensus       161 ~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~  240 (1810)
                      ++++ + .+.+|..+..+....+++.+.++++.|.|||+|.+.|.+|++||+.++|+++|+|+++..||.+++       
T Consensus       209 k~~s-~-~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~dil~~ftG~l~~~hl~~~~-------  279 (1710)
T KOG1070|consen  209 KSTS-E-RVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDILNGFTGFLDKKHLPPFL-------  279 (1710)
T ss_pred             eccC-c-eEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEecccccceeehhhCCchh-------
Confidence            9876 3 888999998888888888889999999999999999999999999999999999999999998774       


Q ss_pred             cCCCCCEEEEEEEEEeCCCCeEEEeeCchhccCCCCCCCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeeccc
Q 000236          241 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV  320 (1810)
Q Consensus       241 ~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~~~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~  320 (1810)
                      .|..||...|.|+.  +..+                   ...++.++.+..+.+... |+..-           +|-+.+
T Consensus       280 ~~~~~~~~l~~vi~--~s~R-------------------v~~~~f~~ka~ki~~l~~-~v~ai-----------~p~~~~  326 (1710)
T KOG1070|consen  280 RYFENQEKLGKVIH--KSDR-------------------VFVVDFFDKASKILVLKA-GVDAI-----------APSRIE  326 (1710)
T ss_pred             hccccHHHhhcccc--hhhh-------------------eeeechhhccceEEEecC-ccceE-----------ccCCcc
Confidence            48888888888643  1111                   122333333333333343 44333           333222


Q ss_pred             chHHHHhhcccccCCCEEEEEEEEEeecCCeEEEEeecccccccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEe
Q 000236          321 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL  400 (1810)
Q Consensus       321 ~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~  400 (1810)
                      .   +-.. ..+++|..++|||+.+..++.++..+++.+.++.++..+.++.||.++.+.| ++..+         ..|+
T Consensus       327 ~---~~~~-e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~k~~~~s~V~~r~l~~~~~-svdt~---------~~~l  392 (1710)
T KOG1070|consen  327 K---VLSF-EIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEGKFSLVSDVSPRGLLKKPV-SVDTE---------EVGL  392 (1710)
T ss_pred             c---ccch-hhcccCceEEEEEEEEeeccceEEeecchhhccCceEEEeccCCceEEEecc-cCChh---------hhhc
Confidence            1   1111 2489999999999999999999999999999999999999999999999998 77664         6789


Q ss_pred             ccCCCCCcccccCCCCCcccCCEEEEEEEEEeCCeEEEEEcchhhcchhhHHhhhhhcCCCcEEEEEEEEEeeceEEEEE
Q 000236          401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF  480 (1810)
Q Consensus       401 vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~  480 (1810)
                      +|..|+..+...+|+.+|..|..|.+|||.+..+++.+|+| .+..+++|.+..|.++.+  ..+|++.++.        
T Consensus       393 ~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v~~~sK~pvis~y~~~~~--~t~~~l~~v~--------  461 (1710)
T KOG1070|consen  393 SPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-VLCVSKLPVISMYADAVK--LTHGMLSKVP--------  461 (1710)
T ss_pred             cccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-eeEeecCcceEEEeeccc--cCcchhhccc--------
Confidence            99999999999999999999999999999999999999999 999999999999988766  6677776665        


Q ss_pred             cCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCCC--CccccccccCCCeEEEEEEEEecC
Q 000236          481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPN  558 (1810)
Q Consensus       481 ~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~--~~~~~~~~~~G~iv~g~V~~v~~~  558 (1810)
                          .|++|+              |++|.++.|||.+|-+.++.+.+|+.++..  ......++++|++|+|+|.++++.
T Consensus       462 ----q~~v~~--------------~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I~~vt~~  523 (1710)
T KOG1070|consen  462 ----QGMVPI--------------YEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVIRKVTPQ  523 (1710)
T ss_pred             ----cCCCCc--------------eecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEEEEecCC
Confidence                555554              556666666666666666666666654422  344556799999999999999999


Q ss_pred             cEEEEEEecCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEeccchhcchhccCCCccccCCCCC
Q 000236          559 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS  638 (1810)
Q Consensus       559 g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~  638 (1810)
                      |+.|.+. .+++.|++|..||+|++.+.+.+..++..|.++ |+|.++.+.+++.|++|++|++...++|.+|+++.+|+
T Consensus       524 Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~  601 (1710)
T KOG1070|consen  524 GVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGK  601 (1710)
T ss_pred             cEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEEEEEccCCeeEEEechhhhcccCCCccchhhcCCCc
Confidence            9999995 466999999999999999999988888888888 89999999999999999999999889999999999999


Q ss_pred             EEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccccCCCChhhH
Q 000236          639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM  718 (1810)
Q Consensus       639 ~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~~~~~~~~~  718 (1810)
                      ++.|++.++.++||||+|+||++||+|.+++++.|+.+++++|.+||||.|+|+++|++++||.|+++.+.|+.++..+.
T Consensus       602 ~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~~~~~  681 (1710)
T KOG1070|consen  602 ITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARACVKRS  681 (1710)
T ss_pred             eEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998744332222


Q ss_pred             HHHHHHHHHHHHhhcccCCCcccccccccccccEEEEEEEEeecceeEEEecccCceeEEEeeeeccCc-----------
Q 000236          719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-----------  787 (1810)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~g~~v~l~~~~~v~g~i~~~~ls~~-----------  787 (1810)
                      .                         +.+..|.+..+.+.+++.+.++|++.+. ++.|++...||.|+           
T Consensus       682 ~-------------------------e~~~~g~v~s~~~~~~tkd~viVei~~~-~~~~v~~~~~L~dg~v~~~~~~~~k  735 (1710)
T KOG1070|consen  682 V-------------------------ENFVKGGVKSLKSIDKTKDSVIVEIVDQ-GITGVGVFGELVDGSVVVNKVLENK  735 (1710)
T ss_pred             H-------------------------HHhhccccccceeehhccccEEEEccCc-ceEEEEEEEEEccCceEEccchhhh
Confidence            2                         3355566777777777777788888774 78888888888763           


Q ss_pred             --------cccCCCeEEEEEEEeecccceEEEeehhhhhhhhhhcchhhHHhHhhhhhccccccCCcceEEEEEEEEeee
Q 000236          788 --------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN  859 (1810)
Q Consensus       788 --------~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~g~V~~i~~~  859 (1810)
                              .+.+|+...++|++++..++.+.+++++.|...+                   .++..|....++|++|...
T Consensus       736 l~~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~-------------------~~l~k~~~~~~~v~~is~~  796 (1710)
T KOG1070|consen  736 LRKNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA-------------------TKLLKGSYALALVRSISKE  796 (1710)
T ss_pred             hhhcchhheeeecceeEEEEEEeehhhhhhhccccccccchH-------------------HHHhcCchhHHHHHhhhhh
Confidence                    3678999999999999888888888888776543                   3477788889999999999


Q ss_pred             eEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeecCCCCcccceeheehh------------cc-ccccc
Q 000236          860 YLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA------------IS-ETETS  925 (1810)
Q Consensus       860 ~v~v~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~~~l~~~~------------~~-~~~~~  925 (1810)
                      +.|++|  .++++++++.+|.+ ....+......||+|.+....++.  ......+....            .. ..+-.
T Consensus       797 ~~~~a~--~~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~--~~~~~~~a~e~p~~K~~~~~~~~~~~~~d~~  872 (1710)
T KOG1070|consen  797 GKFVAF--VSNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEP--KVVKDLKAVEKPKKKKEKKFIKVSSNDSDNE  872 (1710)
T ss_pred             eeheee--cccccceeeccccccccccccceeeeecccceEEEecCh--hHHHHHHhhcchhhccceeEEEeccccCCCc
Confidence            999999  56699999999976 444455667778999999988763  11111111100            00 10111


Q ss_pred             cccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEEeee-c--
Q 000236          926 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN-K-- 1002 (1810)
Q Consensus       926 ~~~~~~~~~~~~~G~~v~~~V~~i~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~-~-- 1002 (1810)
                      -..+.++.+++.+|.++.|+|++|++++++|.++.+.+||||++|++|+..++ ..|+++|++|+.|.++|++.+. +  
T Consensus       873 Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~ei-tDp~~k~~vG~~I~vrviG~~D~k~l  951 (1710)
T KOG1070|consen  873 VDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEI-TDPLDKFKVGDGIFVRVIGGHDVKDL  951 (1710)
T ss_pred             cccccccccceeeeeEEEEEEeeecccceEEeccccccCceehHHhhcccccc-CChhhhcccCCeEEEEEEcCCccccC
Confidence            11345677899999999999999999999999999999999999999988765 4499999999999999999851 0  


Q ss_pred             ---CCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhh
Q 000236         1003 ---PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1079 (1810)
Q Consensus      1003 ---~~~~~~~~~~lS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~ 1079 (1810)
                         ....+..++|||+||+.++......+ +..  +++.||.|+|+|.++..+++|+.++|.++||||+.+++.+...++
T Consensus       952 pith~i~k~~v~ElSvkps~les~~~~t~-s~~--q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~~~le 1028 (1710)
T KOG1070|consen  952 PITHLISKEQVLELSVKPSELESDEFNTT-STK--QFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDLHVLE 1028 (1710)
T ss_pred             ccccccchhhhhhhccChhhhcccccccc-chh--hhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchhhhhh
Confidence               01233578999999999883321111 222  479999999999999999999999999999999999998888889


Q ss_pred             hhcccCCCCcEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCc
Q 000236         1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159 (1810)
Q Consensus      1080 ~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~ 1159 (1810)
                      +|.+.|++|+.++++|+..+..   ..+++.....        ....     ..+|++..|+|.++.++  ++.++++.+
T Consensus      1029 ~~e~~F~~g~al~~~V~~~~~~---~tv~~iG~~~--------~~k~-----~s~G~~l~Grv~kv~~~--~~~l~~~~~ 1090 (1710)
T KOG1070|consen 1029 LPESLFPLGKALDEYVVRNDKS---KTVRAIGFSK--------SDKN-----PSPGDILFGRVSKVLPG--YLILQLPFK 1090 (1710)
T ss_pred             CchhhcccccceeeEEecccce---eEEEeccccc--------CCCC-----CCcchhhcceeeeeccc--eeEEecCCc
Confidence            9999999999999999997732   2233222210        0111     12899999999999998  899999999


Q ss_pred             eEEEEecc-cccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCC
Q 000236         1160 LYGRVHFT-ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1238 (1810)
Q Consensus      1160 ~~G~i~~s-el~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~~~~ 1238 (1810)
                      ..|+++.. +++++|..+           |...|..++.+.+.+|.++..   ++.++||+|.+++.+.         ..
T Consensus      1091 ~~G~~~~i~~~~d~~~~~-----------P~~~f~~~~~v~~~~L~vs~~---n~~leLslr~sr~~~t---------~~ 1147 (1710)
T KOG1070|consen 1091 VFGRVSFIEDMSDSYSMT-----------PVEHFTKIQIVYVCVLSVSAL---NKGLELSLRESRTKIT---------PV 1147 (1710)
T ss_pred             cccceEEeeehhccccCC-----------hHHhcccccEEEEEEEEEecc---cccceeecccccccCc---------cc
Confidence            99988855 999999887           889999999999999999876   3449999998873322         22


Q ss_pred             CCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000236         1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318 (1810)
Q Consensus      1239 ~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri 1318 (1810)
                      ...++.+..++++++|++++|+|.++.+.|+|+.+++++.|+++++++++.+...|+..|++|+.|.++|+++++..+|+
T Consensus      1148 ~~kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv~~ve~~s~ri 1227 (1710)
T KOG1070|consen 1148 DSKDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRVLSVEEDSKRI 1227 (1710)
T ss_pred             cccCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEEEEeeccCceE
Confidence            34677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEEeccccCcccccCcccccCCCCEEEE
Q 000236         1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397 (1810)
Q Consensus      1319 ~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~ 1397 (1810)
                      .|+||++....... ......++++|+...|+|.++.+||+||+++++ ++.|+||++++++.+.++....|..|+.|++
T Consensus      1228 el~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~~~V~a 1306 (1710)
T KOG1070|consen 1228 ELSLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAGDRVKA 1306 (1710)
T ss_pred             EEEEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceeccceeee
Confidence            99999987643222 333467999999999999999999999999975 3699999999999999999999999999999


Q ss_pred             EEEEEecCCCeeEEeecccccCCCccccccCcccchhhhHhhhcccCcccccccCcccccccccc---ccCCCcccc---
Q 000236         1398 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDME---SEDGGSLVL--- 1471 (1810)
Q Consensus      1398 ~I~~id~~~~ri~lslk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--- 1471 (1810)
                      .+++++.+++||++++|.+|+..+++.......++.-+           ..+...  .+. +.++   -++...+..   
T Consensus      1307 ~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~-----------~~~~~~--~d~-~s~~~~~~~d~g~q~~~~g 1372 (1710)
T KOG1070|consen 1307 CVLKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVE-----------MEEESH--SDP-KSMEEVAAEDPGFQSSSGG 1372 (1710)
T ss_pred             EeeeccchhhhhhhhhhhhccCChhhhhcccccccCcc-----------hhcccc--cCc-cchhhhcccCCCccccccc
Confidence            99999999999999999999966443321110000000           000000  000 0000   000000000   


Q ss_pred             -----cccccccCCCCc-cc-CCCCCCCCcCCCCCCCCCCcchhchhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCC
Q 000236         1472 -----AQIESRASVPPL-EV-NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP 1544 (1810)
Q Consensus      1472 -----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~~~~ 1544 (1810)
                           ..++.....+++ +- .|++++.|++-+  +++.++++.+        ++++..+++.|.....+++.++. +.|
T Consensus      1373 ~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~--~~e~~qde~d--------ee~e~~kee~e~~~~~~e~~dl~-~~p 1441 (1710)
T KOG1070|consen 1373 FNLEDAVDEMSETLPDALEDSCETDSEVDEEVE--DEELDQDEKD--------EEKEKDKEEREENRSDEEERDLS-RAP 1441 (1710)
T ss_pred             eehhhhhhhccccCCchhhhcccchhhhhhccc--cccccccccc--------hhhhhhhhhccccccchhhcccc-cCC
Confidence                 001111111211 11 133322221111  1111111000        01111112222333333443433 699


Q ss_pred             CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000236         1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624 (1810)
Q Consensus      1545 ~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~v 1624 (1810)
                      ++.++|+|+++.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|++|+|+++.||  +.+...++
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKV 1519 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  78999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCCh
Q 000236         1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1703 (1810)
Q Consensus      1625 ferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~ 1703 (1810)
                      |+||+++|++..+|..|+.+|...+++++|.++|+.|+++|++..++|..|++|++++ +.++|+.+++|||+.+|+++|
T Consensus      1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            9999999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000236         1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783 (1810)
Q Consensus      1704 ~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~ 1783 (1810)
                      ++++..||+++|++||.+|||++|+..+..+|++.|+|+.|+++++++|+.+.+|.+|||++.+++++++|+++|++|++
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000236         1784 YEKSVGEEERIEYVKQKAMEYVESTL 1809 (1810)
Q Consensus      1784 ~E~~~G~~~~a~~v~~rAl~~v~~~~ 1809 (1810)
                      ||+++||.+.++.++.||.+||++..
T Consensus      1680 yEk~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred             HHHhcCchhhHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999853

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]	Back alignment and domain information

>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>PRK06299 rpsA 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional	Back alignment and domain information

>TIGR00717 rpsA ribosomal protein S1	Back alignment and domain information

>PRK06299 rpsA 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>TIGR00717 rpsA ribosomal protein S1	Back alignment and domain information

>PRK13806 rpsA 30S ribosomal protein S1; Provisional	Back alignment and domain information

>PRK13806 rpsA 30S ribosomal protein S1; Provisional	Back alignment and domain information

>PRK07899 rpsA 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>PRK07899 rpsA 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>PRK06676 rpsA 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>PRK06676 rpsA 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed	Back alignment and domain information

>PRK07400 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>PRK07400 30S ribosomal protein S1; Reviewed	Back alignment and domain information

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0495 consensus HAT repeat protein [RNA processing and modification]	Back alignment and domain information

>KOG0495 consensus HAT repeat protein [RNA processing and modification]	Back alignment and domain information

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]	Back alignment and domain information

>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG1258 consensus mRNA processing protein [RNA processing and modification]	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins	Back alignment and domain information

>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]	Back alignment and domain information

>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain	Back alignment and domain information

>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PRK08582 hypothetical protein; Provisional	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]	Back alignment and domain information

>PRK07252 hypothetical protein; Provisional	Back alignment and domain information

>PRK08582 hypothetical protein; Provisional	Back alignment and domain information

>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>KOG1258 consensus mRNA processing protein [RNA processing and modification]	Back alignment and domain information

>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>PRK07252 hypothetical protein; Provisional	Back alignment and domain information

>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain	Back alignment and domain information

>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]	Back alignment and domain information

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>PRK05807 hypothetical protein; Provisional	Back alignment and domain information

>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK05807 hypothetical protein; Provisional	Back alignment and domain information

>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK08059 general stress protein 13; Validated	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>PRK08059 general stress protein 13; Validated	Back alignment and domain information

>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide	Back alignment and domain information

>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>PHA02945 interferon resistance protein; Provisional	Back alignment and domain information

>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa	Back alignment and domain information

>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa	Back alignment and domain information

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>PHA02945 interferon resistance protein; Provisional	Back alignment and domain information

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain	Back alignment and domain information

>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain	Back alignment and domain information

>smart00316 S1 Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain	Back alignment and domain information

>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]	Back alignment and domain information

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00316 S1 Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain	Back alignment and domain information

>COG2183 Tex Transcriptional accessory protein [Transcription]	Back alignment and domain information

>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>PRK03987 translation initiation factor IF-2 subunit alpha; Validated	Back alignment and domain information

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG2183 Tex Transcriptional accessory protein [Transcription]	Back alignment and domain information

>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease	Back alignment and domain information

>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease	Back alignment and domain information

>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>PRK09521 exosome complex RNA-binding protein Csl4; Provisional	Back alignment and domain information

>PRK03987 translation initiation factor IF-2 subunit alpha; Validated	Back alignment and domain information

>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain	Back alignment and domain information

>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional	Back alignment and domain information

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala	Back alignment and domain information

>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional	Back alignment and domain information

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	Back alignment and domain information

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PRK09521 exosome complex RNA-binding protein Csl4; Provisional	Back alignment and domain information

>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain	Back alignment and domain information

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala	Back alignment and domain information

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	Back alignment and domain information

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]	Back alignment and domain information

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain	Back alignment and domain information

>PRK10866 outer membrane biogenesis protein BamD; Provisional	Back alignment and domain information

>PRK09202 nusA transcription elongation factor NusA; Validated	Back alignment and domain information

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>PRK09202 nusA transcription elongation factor NusA; Validated	Back alignment and domain information

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional	Back alignment and domain information

>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]	Back alignment and domain information

Back alignment and domain information

>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]	Back alignment and domain information

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02063 RNase_R ribonuclease R	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]	Back alignment and domain information

>COG3898 Uncharacterized membrane-bound protein [Function unknown]	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form	Back alignment and domain information

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain	Back alignment and domain information

>PRK11642 exoribonuclease R; Provisional	Back alignment and domain information

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PRK11906 transcriptional regulator; Provisional	Back alignment and domain information

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PRK10153 DNA-binding transcriptional activator CadC; Provisional	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>TIGR02063 RNase_R ribonuclease R	Back alignment and domain information

>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases	Back alignment and domain information

>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain	Back alignment and domain information

>PRK11906 transcriptional regulator; Provisional	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional	Back alignment and domain information

>TIGR01953 NusA transcription termination factor NusA	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>COG0457 NrfG FOG: TPR repeat [General function prediction only]	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>TIGR01953 NusA transcription termination factor NusA	Back alignment and domain information

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]	Back alignment and domain information

>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]	Back alignment and domain information

>PRK12327 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PRK10153 DNA-binding transcriptional activator CadC; Provisional	Back alignment and domain information

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]	Back alignment and domain information

>COG0457 NrfG FOG: TPR repeat [General function prediction only]	Back alignment and domain information

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK11642 exoribonuclease R; Provisional	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PHA02858 EIF2a-like PKR inhibitor; Provisional	Back alignment and domain information

>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional	Back alignment and domain information

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]	Back alignment and domain information

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK12327 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]	Back alignment and domain information

>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain	Back alignment and domain information

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK10866 outer membrane biogenesis protein BamD; Provisional	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division	Back alignment and domain information

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13428 TPR_14: Tetratricopeptide repeat	Back alignment and domain information

>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>PHA02858 EIF2a-like PKR inhibitor; Provisional	Back alignment and domain information

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]	Back alignment and domain information

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]	Back alignment and domain information

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division	Back alignment and domain information

>PRK15331 chaperone protein SicA; Provisional	Back alignment and domain information

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK05054 exoribonuclease II; Provisional	Back alignment and domain information

>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain	Back alignment and domain information

>PF13512 TPR_18: Tetratricopeptide repeat	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>PF13512 TPR_18: Tetratricopeptide repeat	Back alignment and domain information

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional	Back alignment and domain information

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]	Back alignment and domain information

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG4555 consensus TPR repeat-containing protein [Function unknown]	Back alignment and domain information

>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []	Back alignment and domain information

>COG3898 Uncharacterized membrane-bound protein [Function unknown]	Back alignment and domain information

>PRK15331 chaperone protein SicA; Provisional	Back alignment and domain information

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]	Back alignment and domain information

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]	Back alignment and domain information

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK12328 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional	Back alignment and domain information

>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]	Back alignment and domain information

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins	Back alignment and domain information

>KOG4555 consensus TPR repeat-containing protein [Function unknown]	Back alignment and domain information

>PF13428 TPR_14: Tetratricopeptide repeat	Back alignment and domain information

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional	Back alignment and domain information

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]	Back alignment and domain information

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []	Back alignment and domain information

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05054 exoribonuclease II; Provisional	Back alignment and domain information

>TIGR02062 RNase_B exoribonuclease II	Back alignment and domain information

>COG0557 VacB Exoribonuclease R [Transcription]	Back alignment and domain information

>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional	Back alignment and domain information

>TIGR00757 RNaseEG ribonuclease, Rne/Rng family	Back alignment and domain information

>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain	Back alignment and domain information

>smart00386 HAT HAT (Half-A-TPR) repeats	Back alignment and domain information

>PF13509 S1_2: S1 domain; PDB: 3GO5_A	Back alignment and domain information

>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain	Back alignment and domain information

>PF13509 S1_2: S1 domain; PDB: 3GO5_A	Back alignment and domain information

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]	Back alignment and domain information

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12328 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>TIGR00757 RNaseEG ribonuclease, Rne/Rng family	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases	Back alignment and domain information

>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]	Back alignment and domain information

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1	Back alignment and domain information

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13431 TPR_17: Tetratricopeptide repeat	Back alignment and domain information

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]	Back alignment and domain information

>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production	Back alignment and domain information

>TIGR02062 RNase_B exoribonuclease II	Back alignment and domain information

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13431 TPR_17: Tetratricopeptide repeat	Back alignment and domain information

>COG0557 VacB Exoribonuclease R [Transcription]	Back alignment and domain information

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene	Back alignment and domain information

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans	Back alignment and domain information

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]	Back alignment and domain information

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK12329 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PF13281 DUF4071: Domain of unknown function (DUF4071)	Back alignment and domain information

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing	Back alignment and domain information

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases	Back alignment and domain information

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene	Back alignment and domain information

>PRK12329 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans	Back alignment and domain information

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00386 HAT HAT (Half-A-TPR) repeats	Back alignment and domain information

>PF13281 DUF4071: Domain of unknown function (DUF4071)	Back alignment and domain information

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]	Back alignment and domain information

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PRK10811 rne ribonuclease E; Reviewed	Back alignment and domain information

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []	Back alignment and domain information

>PRK10811 rne ribonuclease E; Reviewed	Back alignment and domain information

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A	Back alignment and domain information

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi	Back alignment and domain information

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]	Back alignment and domain information

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]	Back alignment and domain information

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]	Back alignment and domain information

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]	Back alignment and domain information

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]	Back alignment and domain information

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>PRK11712 ribonuclease G; Provisional	Back alignment and domain information

>PRK11712 ribonuclease G; Provisional	Back alignment and domain information

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome	Back alignment and domain information

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]	Back alignment and domain information

>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit	Back alignment and domain information

>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi	Back alignment and domain information

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed	Back alignment and domain information

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A	Back alignment and domain information

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A	Back alignment and domain information

>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]	Back alignment and domain information

>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome	Back alignment and domain information

>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit	Back alignment and domain information

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates