Citrus Sinensis ID: 000341

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630----

MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

cccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHcccccccccccHHHccHHHHHHccccHHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHEEEEccccccccccccccHHHHHccHHHHcccHHHHHHHHccccccccccccccccccccccc

ccccccccccccHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccEEHHHHHHcHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHEEEcccccccccccccccEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHEcccHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEEcHcHHHHccHHHHHHccHHHHHHHHHccccccEEEccccHHHHHEEEEEEcccccHHHHHHHHHHccccHHHHcccccccccccEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHcHHHHHHHHHHcccHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccEccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHcHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHcccHHHHHccHHHHHccccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccEEEEccccccccccc

mdqnqsqrssigaatassassrayqfhPARAAIIDLFNLylgrssrqkqddsirdpplLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNrelpprneqFLIDFEQlqsqfpdqdqlrSVTESVLISMVVQCCSHVPRAEFILFALRSLCSigyinwdtfLPSLLSSvssaemsagqgsqampavsatslqqsgmlptssgipnssnyqssnpasplpsvhgigspaqsaiETSVcaamspvkssdvsctgqqfttrvnsSVRDNAISSLRQLCCKIILTGLefslkpvthADIFYHMLNWLVTWDqkqqgidesdgksWRLDKALIEWLHSCLDVIWLlvdedrcrvpFYELLRTGLQfienipddEALFTLILEIHRRRDMMAMHMQMLDqhlhcptfgthrilsqttpnisveaagnlryspitypsvlgeplhgedlatsiqrgSLDWERAMRCIRHAiratpspdwwKRVLLVapcyrnpaqgptpgavftYDMISEAVIDRIVELLKLTnsevncwhdwlIFSDVFFFLVKSGCIDFVDFVDKLVSRlqdgdnhilRTNHVTWLLAQIIRVELVMGalnsdsrkVETTRKILSFHredrctdpnnpqSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLssagvtelfpgsnlppnerlmvmrevnplpmslltGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAqrnpsllakvgvtpLVLEIVNYRLlplyryqgkTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDffslkregkgsteftETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQctqllspsadptyvktylshsfpqhRQYLCAGAWIlmqghpeninSANLLRVLRefspeevtsNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYcmnrgppehwlySGLFKRVELQKALGNhlswkeryptfFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNvfdlskipfsesfpqhisssnpvmcpplDYFATLLLGLVNNvipalnynsksgstmdaslraphnkspmtsqsgpsnvsegrkefyqnqdpgtyTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIqptliqtsngpygasnsvgqgsvlptspsggstdslgasrstpsvsgintssfvsrsgytcqqLSCLLIQACGLLlaqlppdfhMQLYMEASRIIKESwwladgkrslgeldsavgyalldptwaaqdntsTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMgpllprlvNAHTLFNKTLALLLNTMgdvygkntlppapveasEIADLIDFLHHVVHyegqggpvqasskprpevLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

mdqnqsqrssigaatassassrAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLqfienipddeALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHairatpspdwwKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMgalnsdsrkvETTRKILSfhredrctdpnnPQSILLDFISSCQNLRIWSLNTSTREYLnneqlqkgkqidewWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSllakvgvtplVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGkgsteftetlnrITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRaphnkspmtsqsgpsnvSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQggpvqasskprPEVLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

MDQNQSQRssigaatassassraYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFlpsllssvssAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGdrmmdymnmddrSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEllpldilllalidrdddpHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPvsasqivsslvqivvniqPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

***********************YQFHPARAAIIDLFNLYLG*************PPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQ*******QLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLL****************************************************************************************FTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD***VETTRKILSFHR***C******QSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNY*******************************************GTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQT*********************************************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG**********************************************************

******************************AAIIDLFNLY*******************IRGLVACCGGILL******************************IDFEQLQSQ*****Q**SVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLL*****************************************************************************************************ISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQ****************KALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVA**************VFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLN****************QIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFP******N*RLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF*GQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQ*****************ETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQA*TTV***C***L***ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQR*HSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLR****************VSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLG***************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQ**SKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAAT*********

**********************AYQFHPARAAIIDLFNLYLGR********SIRDPPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS*********************SLQQSGMLPTSSGIP****************VHGIGSPAQSAIETSV***************GQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA*******************RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLP********************SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQG*********RPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

************************QFHPARAAIIDLFNLYLGRS*******SIRDPPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEM***************************************************************************************SVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQG*****GKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSP**************************SRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKM*****

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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1634	2.2.26 [Sep-21-2011]
F4I4P3		1615	Mediator of RNA polymeras	yes	no	0.963	0.974	0.724	0.0
Q9W1X7		1439	Mediator of RNA polymeras	yes	no	0.345	0.391	0.212	2e-12
Q55BN0		1662	Putative mediator of RNA	yes	no	0.249	0.244	0.220	1e-10
Q16HH9		1409	Mediator of RNA polymeras	N/A	no	0.340	0.394	0.207	7e-09
Q5RIW8		1376	Mediator of RNA polymeras	yes	no	0.451	0.536	0.206	2e-08
Q5EB59		1367	Mediator of RNA polymeras	yes	no	0.446	0.534	0.201	4e-08
Q9ULK4		1368	Mediator of RNA polymeras	yes	no	0.455	0.544	0.2	2e-07
Q80YQ2		1367	Mediator of RNA polymeras	yes	no	0.447	0.534	0.201	2e-07
Q6P423		1369	Mediator of RNA polymeras	N/A	no	0.361	0.431	0.209	3e-05
Q60UZ5		1589	Mediator of RNA polymeras	N/A	no	0.170	0.175	0.218	5e-05

>sp\|F4I4P3\|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1	Back alignment and function desciption

 Score = 2438 bits (6319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1198/1653 (72%), Positives = 1373/1653 (83%), Gaps = 79/1653 (4%)

Query: 4    NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGL 63
            +QSQR+      A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPP      
Sbjct: 2    DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPP------ 51

Query: 64   VACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTE 123
                             NK+QKRV A NR+LPPRNEQFL+DFE LQSQF D +QLR++TE
Sbjct: 52   -----------------NKSQKRVHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITE 94

Query: 124  SVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM 183
            SVLIS+VVQC +H PRAEF+LFALR+LC I YINWDTFLPSLLSSVS+AE S  QG QA 
Sbjct: 95   SVLISLVVQCSNHAPRAEFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAA 154

Query: 184  PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPV 243
             A + +S   S           S    S NP S LPS HGIGSP+ S ++       S  
Sbjct: 155  AATAGSSATSS----------QSVVPVSVNPTSLLPSAHGIGSPSASEVK-------SVE 197

Query: 244  KSSDVSCTGQ---QFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHML 300
                ++  GQ   +   R +  +R  A++SLRQL CKIIL G+E SLKPVTHA+IF +M+
Sbjct: 198  NGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMM 257

Query: 301  NWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQ 360
            NWLV WD++  G ++S GKSWR +K L EWL SCLDVIWLLV+E   R+PFYELLR+GLQ
Sbjct: 258  NWLVNWDRRDLGTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQ 317

Query: 361  FIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAG 420
            FIENIPDDEALFTLI+EIHRRRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+  EA  
Sbjct: 318  FIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVP 377

Query: 421  NLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVA 480
            +LR+SPITYPSVLGEPL+GEDLA SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VA
Sbjct: 378  HLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVA 437

Query: 481  PCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTNS-------------------EV 520
            PCYR   Q GP PGAVFT DMI EA+IDRIVELLKLTNS                   + 
Sbjct: 438  PCYRPSTQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADA 497

Query: 521  NCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVEL 580
            NCW +WL+FSD+FFFL+KSGC DFVDF+DKLV RL   DNHILRTNHVTWLLAQIIRVEL
Sbjct: 498  NCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVEL 557

Query: 581  VMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYL 640
            VM ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YL
Sbjct: 558  VMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYL 617

Query: 641  NNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSA 700
            NNEQL KGKQIDEWWR  SKG+RMMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSA
Sbjct: 618  NNEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSA 675

Query: 701  GVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIA 760
            G+ EL PG  L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIA
Sbjct: 676  GMAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIA 732

Query: 761  MVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTK 820
            MVETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+K
Sbjct: 733  MVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSK 792

Query: 821  TLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRI 880
            TLMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRI
Sbjct: 793  TLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRI 852

Query: 881  TVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDK 940
            T++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DK
Sbjct: 853  TIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDK 912

Query: 941  RGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPE 1000
            RGL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH E
Sbjct: 913  RGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAE 972

Query: 1001 NINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVL 1060
            NINS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  
Sbjct: 973  NINSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFW 1032

Query: 1061 THELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFK 1120
            THE+LPLDI LLALIDRDDDPHAL I ++LL   +L  R+K YC NRG PEHWL + +FK
Sbjct: 1033 THEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFK 1092

Query: 1121 RVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFL 1180
            R ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FL
Sbjct: 1093 RNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFL 1152

Query: 1181 AYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLD 1240
            AY+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS +   +CPPLD
Sbjct: 1153 AYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLD 1212

Query: 1241 YFATLLLGLVNNVIPALNYNSKS-------GSTMDASLRAPHNKSPMTSQSGPSNVSEGR 1293
            YFA+LLL LVNNVIP L+ +S            +++S R PH K+P TSQ GP+N SEG+
Sbjct: 1213 YFASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQ 1272

Query: 1294 KEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGAS 1353
            K FYQ QDPGTYTQLVLETAVIEILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+
Sbjct: 1273 KAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAA 1332

Query: 1354 NSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLL 1413
            N VGQGSVLPTSPSGGSTDS+ ASRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLL
Sbjct: 1333 NGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLL 1392

Query: 1414 LAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 1473
            LAQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIG
Sbjct: 1393 LAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIG 1452

Query: 1474 NIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNK 1533
            NIVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNK
Sbjct: 1453 NIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNK 1512

Query: 1534 TLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLV 1593
            TL LLL+ + DV+GK     APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L 
Sbjct: 1513 TLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILA 1572

Query: 1594 LTGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1626
            L GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct: 1573 LIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9W1X7\|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1	Back alignment and function description

>sp\|Q55BN0\|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23 OS=Dictyostelium discoideum GN=med23 PE=3 SV=1	Back alignment and function description

>sp\|Q16HH9\|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes aegypti GN=MED23 PE=3 SV=1	Back alignment and function description

>sp\|Q5RIW8\|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio GN=med23 PE=2 SV=2	Back alignment and function description

>sp\|Q5EB59\|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus GN=Med23 PE=2 SV=2	Back alignment and function description

>sp\|Q9ULK4\|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2	Back alignment and function description

>sp\|Q80YQ2\|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus GN=Med23 PE=1 SV=2	Back alignment and function description

>sp\|Q6P423\|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis GN=med23 PE=2 SV=1	Back alignment and function description

>sp\|Q60UZ5\|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1634
255586806		1613	conserved hypothetical protein [Ricinus	0.981	0.994	0.832	0.0
356530772		1615	PREDICTED: uncharacterized protein LOC10	0.983	0.995	0.791	0.0
359472598		1663	PREDICTED: uncharacterized protein LOC10	0.950	0.933	0.820	0.0
297845394		1637	hypothetical protein ARALYDRAFT_472581 [	0.971	0.969	0.728	0.0
334182788		1592	uncharacterized protein [Arabidopsis tha	0.960	0.986	0.731	0.0
15220680		1615	uncharacterized protein [Arabidopsis tha	0.963	0.974	0.724	0.0
297737648		1550	unnamed protein product [Vitis vinifera]	0.914	0.963	0.739	0.0
9295691		1583	F26F24.8 [Arabidopsis thaliana]	0.949	0.979	0.713	0.0
115448499		1620	Os02g0732700 [Oryza sativa Japonica Grou	0.977	0.985	0.668	0.0
242062622		1613	hypothetical protein SORBIDRAFT_04g02884	0.976	0.989	0.666	0.0

>gi\|255586806\|ref\|XP_002534017.1\| conserved hypothetical protein [Ricinus communis] gi\|223525976\|gb\|EEF28365.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 2732 bits (7083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1367/1643 (83%), Positives = 1479/1643 (90%), Gaps = 39/1643 (2%)

Query: 1    MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLI 60
            MDQNQ    SI A TA+S   R YQF PARAAIIDLFNLYLGRSSRQK DDS R+PP   
Sbjct: 1    MDQNQR---SIAATTAAS---RGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPP--- 51

Query: 61   RGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRS 120
                                NKTQKRVLALNRELPPRNEQFLI+FEQLQSQFPDQDQLRS
Sbjct: 52   --------------------NKTQKRVLALNRELPPRNEQFLINFEQLQSQFPDQDQLRS 91

Query: 121  VTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGS 180
            VTESVLIS+V+QCC+H PRAEF+LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQ  
Sbjct: 92   VTESVLISLVIQCCNHAPRAEFLLFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQAG 151

Query: 181  QAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAM 240
            Q + A+S+ +  Q+ +LP+SS IPNSSN+Q SNP SPL SVHGIGSP QSAIE S+ A +
Sbjct: 152  QTVSAISSMNSSQNVILPSSSAIPNSSNFQPSNPTSPLASVHGIGSPVQSAIEPSLLATV 211

Query: 241  SPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHML 300
            SPVKSSD+S  GQ  T+RVN S RDNAI+SLRQLCCKIILTGLEF+LKP TH++IF+HML
Sbjct: 212  SPVKSSDISGNGQPSTSRVNLSSRDNAINSLRQLCCKIILTGLEFNLKPATHSEIFHHML 271

Query: 301  NWLVTWDQKQQGIDESDG-KSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGL 359
            NWLV WDQ+Q G+DESD  +SWR +KALIEWL SCLDVIWLLVDE++CRVPFYELLR+GL
Sbjct: 272  NWLVNWDQRQHGVDESDSVRSWRPEKALIEWLRSCLDVIWLLVDENKCRVPFYELLRSGL 331

Query: 360  QFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAA 419
            QFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAA
Sbjct: 332  QFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAA 391

Query: 420  GNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLV 479
             NLRYSPITYPSVLGEPLHGEDLA SIQRGSLDWERA+RCIRHA+R TPSPDWWKRVLLV
Sbjct: 392  ANLRYSPITYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLV 451

Query: 480  APCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKS 539
            AP YRNPA GPTPGAVF   MI EA IDRIVELLKLTNSEVNCW +WL+FSD+ FFL+KS
Sbjct: 452  APSYRNPAHGPTPGAVFVSSMICEATIDRIVELLKLTNSEVNCWQEWLVFSDILFFLMKS 511

Query: 540  GCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKIL 599
            GCIDFVDFVDKLV+RL +GD HILRTNH+TWLLAQIIRVE+V+ AL +D+RKVETTRKI+
Sbjct: 512  GCIDFVDFVDKLVARLTEGDQHILRTNHMTWLLAQIIRVEIVVNALTTDARKVETTRKIM 571

Query: 600  SFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVS 659
            SFHREDR +DPNNPQSILLDFISSCQNLRIWSLNTSTREYLN+EQLQKGKQIDEWWR V+
Sbjct: 572  SFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRTVT 631

Query: 660  KGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMV 719
            KGDRM+DYMNMDDRS+GMFWVVSYTM+QPACETV+NWLSSAGV+EL  G+++  NERLMV
Sbjct: 632  KGDRMIDYMNMDDRSIGMFWVVSYTMSQPACETVVNWLSSAGVSEL-AGTSMQSNERLMV 690

Query: 720  MREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRS 779
            MREVNPLP+SLL+G SLNLCLKL  Q+EDS+F GQV+ SIAMVETY RL+L+APHSLFRS
Sbjct: 691  MREVNPLPISLLSGLSLNLCLKLVFQLEDSLFAGQVIPSIAMVETYCRLLLIAPHSLFRS 750

Query: 780  LFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYR-----YQGKTKTLMYDITKIISALK 834
             FSHLAQR PSLL+K GVT LV EIVNYRLLPLYR     YQGK+K+LMYD+TKI+S LK
Sbjct: 751  HFSHLAQRYPSLLSKPGVTLLVFEIVNYRLLPLYRQEHVEYQGKSKSLMYDVTKIVSTLK 810

Query: 835  VKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI 894
             KRGDHRV RLAENLCMNLILS RDFFS+KREGKG TEFTETLNR+TVI LAIIIKTRGI
Sbjct: 811  GKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRVTVITLAIIIKTRGI 870

Query: 895  ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETT 954
            ADADH+LYLQTMLEQIMATSQHTWSEKTLRYFPSLL DAL GRIDKRGL IQ WQQ ETT
Sbjct: 871  ADADHLLYLQTMLEQIMATSQHTWSEKTLRYFPSLLHDALSGRIDKRGLAIQEWQQTETT 930

Query: 955  VINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREF 1014
            VINQCTQLLSPSA+P YV TY++HSFPQHRQYLCAGAWILMQGHPENINS NL RVLREF
Sbjct: 931  VINQCTQLLSPSAEPAYVMTYINHSFPQHRQYLCAGAWILMQGHPENINSVNLARVLREF 990

Query: 1015 SPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLAL 1074
            SPEEVTSNIYTMVDVLLH I +ELQ GHSLQDLL K CAN++FFV  HELLPLDILLLAL
Sbjct: 991  SPEEVTSNIYTMVDVLLHRIQMELQHGHSLQDLLLKTCANLAFFVWGHELLPLDILLLAL 1050

Query: 1075 IDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSW 1134
             DRDDDPHALRIVI+LLDRQELQQRVKL+CMNRGPPEHWL+SG+FKR+ELQKALGNHLSW
Sbjct: 1051 TDRDDDPHALRIVISLLDRQELQQRVKLFCMNRGPPEHWLFSGVFKRLELQKALGNHLSW 1110

Query: 1135 KERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDIL 1194
            K+RYPTFFDDIAARLLPVIPLIVYRL+ENDA+D ADRVLA YS FLAY+PLRF+FVRDIL
Sbjct: 1111 KDRYPTFFDDIAARLLPVIPLIVYRLVENDAIDPADRVLAMYSPFLAYHPLRFTFVRDIL 1170

Query: 1195 AYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVI 1254
            AYFYGHLPGKLIVRILNV DLSKIPFSESFPQHISSSNPVMCPP +YFATLLLGLVNNV+
Sbjct: 1171 AYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVL 1230

Query: 1255 PALNYNSKSGSTMDA---SLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLE 1311
            P LN NSK GS  D    SLR P+ K+P TSQSGP+N+S+ +K FYQ QDPGTYTQLVLE
Sbjct: 1231 PPLNTNSKYGSLGDGLCNSLRNPNTKTPATSQSGPTNISDAQKAFYQIQDPGTYTQLVLE 1290

Query: 1312 TAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGST 1371
            TAVIE+LSLPV+ASQIVSSLVQIVVNIQPTLIQ+SNG +GASN  GQGSVLPTSPSGGST
Sbjct: 1291 TAVIELLSLPVTASQIVSSLVQIVVNIQPTLIQSSNGLHGASNGAGQGSVLPTSPSGGST 1350

Query: 1372 DSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASR 1431
            DSLGASRS PSVSGINT++FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLYMEASR
Sbjct: 1351 DSLGASRSNPSVSGINTATFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHLQLYMEASR 1410

Query: 1432 IIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWL 1491
            IIKESWWL D KRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWL
Sbjct: 1411 IIKESWWLTDAKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWL 1470

Query: 1492 EGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTL 1551
            EGTH I+KHLRPITSVAMLRI FRIMGPLLPRL NAH+LFNKTL LLLNTM DV+G+N+ 
Sbjct: 1471 EGTHAIVKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNKTLLLLLNTMVDVFGRNSQ 1530

Query: 1552 PPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLS 1611
            P  PVEASEIADLIDFLHHV+HYEGQGGPVQA+SKPR EVL L GRAAESLRP++QHLLS
Sbjct: 1531 PSTPVEASEIADLIDFLHHVIHYEGQGGPVQANSKPRAEVLALCGRAAESLRPDIQHLLS 1590

Query: 1612 HLKPDVNSSIYAATHPKMVQNPS 1634
            HLKPDVNSSIYAATHPK+VQNPS
Sbjct: 1591 HLKPDVNSSIYAATHPKLVQNPS 1613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356530772\|ref\|XP_003533954.1\| PREDICTED: uncharacterized protein LOC100798789 [Glycine max]	Back alignment and taxonomy information

>gi\|359472598\|ref\|XP_002281148.2\| PREDICTED: uncharacterized protein LOC100262719 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297845394\|ref\|XP_002890578.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] gi\|297336420\|gb\|EFH66837.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182788\|ref\|NP_001185071.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332192239\|gb\|AEE30360.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15220680\|ref\|NP_173737.1\| uncharacterized protein [Arabidopsis thaliana] gi\|395406782\|sp\|F4I4P3.1\|MED23_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 23 gi\|332192238\|gb\|AEE30359.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297737648\|emb\|CBI26849.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9295691\|gb\|AAF86997.1\|AC005292_6 F26F24.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|115448499\|ref\|NP_001048029.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|46390660\|dbj\|BAD16142.1\| unknown protein [Oryza sativa Japonica Group] gi\|113537560\|dbj\|BAF09943.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|222623623\|gb\|EEE57755.1\| hypothetical protein OsJ_08276 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242062622\|ref\|XP_002452600.1\| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor] gi\|241932431\|gb\|EES05576.1\| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1634
TAIR\|locus:2028040		1615	AT1G23230 "AT1G23230" [Arabido	0.934	0.945	0.707	0.0
DICTYBASE\|DDB_G0270434		1662	med23 "putative mediator compl	0.252	0.247	0.233	1.2e-13
FB\|FBgn0034795		1439	MED23 "Mediator complex subuni	0.309	0.351	0.211	6.4e-10
ZFIN\|ZDB-GENE-040724-82		1387	med23 "mediator complex subuni	0.394	0.465	0.199	4.5e-07
UNIPROTKB\|F1N8H3		1392	MED23 "Uncharacterized protein	0.393	0.461	0.201	3.9e-05
RGD\|1307671		1367	Med23 "mediator complex subuni	0.425	0.509	0.193	0.00034
UNIPROTKB\|Q5EB59		1367	Med23 "Mediator of RNA polymer	0.425	0.509	0.193	0.00034
UNIPROTKB\|Q9ULK4		1368	MED23 "Mediator of RNA polymer	0.399	0.477	0.199	0.00036

TAIR\|locus:2028040 AT1G23230 "AT1G23230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5706 (2013.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 1113/1573 (70%), Positives = 1277/1573 (81%)

Query:    81 NKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRA 140
             NK+QKRV A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRA
Sbjct:    52 NKSQKRVHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRA 111

Query:   141 EFILFALRSLCSIGYINWDTFXXXXXXXXXXAEMSAGQGSQAMPAVSATSLQQSGMLPTS 200
             EF+LFALR+LC I YINWDTF          AE S  QG QA  A + +S   S      
Sbjct:   112 EFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS-----Q 166

Query:   201 SGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVN 260
             S +P      S NP S LPS HGIGSP+ S ++ SV       ++  +    ++   R +
Sbjct:   167 SVVP-----VSVNPTSLLPSAHGIGSPSASEVK-SVENGQQIARAGQIV---RENAMRNS 217

Query:   261 SSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKS 320
               +R  A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++  G ++S GKS
Sbjct:   218 QRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKS 277

Query:   321 WRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHR 380
             WR +K L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHR
Sbjct:   278 WRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHR 337

Query:   381 RRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGE 440
             RRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GE
Sbjct:   338 RRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGE 397

Query:   441 DLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYD 499
             DLA SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT D
Sbjct:   398 DLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSD 457

Query:   500 MISEAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSG 540
             MI EA+IDRIVELLKLTNS                   + NCW +WL+FSD+FFFL+KSG
Sbjct:   458 MICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSG 517

Query:   541 CIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILS 600
             C DFVDF+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILS
Sbjct:   518 CTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILS 577

Query:   601 FHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSK 660
             FHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SK
Sbjct:   578 FHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SK 635

Query:   661 GXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVM 720
             G            S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ 
Sbjct:   636 GERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMT 692

Query:   721 REVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSL 780
             +EV PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS 
Sbjct:   693 QEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSH 752

Query:   781 FSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDH 840
             FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDH
Sbjct:   753 FSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDH 812

Query:   841 RVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHV 900
             R+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH+
Sbjct:   813 RIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHM 872

Query:   901 LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCT 960
             +YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCT
Sbjct:   873 VYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCT 932

Query:   961 QLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVT 1020
             QLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT
Sbjct:   933 QLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVT 992

Query:  1021 SNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXXXXXXXXXXX 1080
             +NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE                 
Sbjct:   993 ANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDD 1052

Query:  1081 XHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPT 1140
              HAL I ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPT
Sbjct:  1053 PHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPT 1112

Query:  1141 FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGH 1200
             FFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGH
Sbjct:  1113 FFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGH 1172

Query:  1201 LPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPAL--- 1257
             LPGKL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L   
Sbjct:  1173 LPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSS 1232

Query:  1258 -NYNSKSGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETA 1313
              N +S+SGS  D   +S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETA
Sbjct:  1233 SNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETA 1292

Query:  1314 VIEILSLPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDS 1373
             VIEILSLP                   TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS
Sbjct:  1293 VIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDS 1352

Query:  1374 LGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRII 1433
             + ASRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ 
Sbjct:  1353 MSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVT 1412

Query:  1434 KESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEG 1493
             +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFSNLPQEWL+G
Sbjct:  1413 RETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDG 1472

Query:  1494 THVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPP 1553
             T+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + DV+GK     
Sbjct:  1473 TNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTT 1532

Query:  1554 APVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHL 1613
             APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP+VQHLL+HL
Sbjct:  1533 APVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRPDVQHLLAHL 1592

Query:  1614 KPDVNSSIYAATH 1626
             K + NSSIYAA H
Sbjct:  1593 KTNPNSSIYAAAH 1605

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0270434 med23 "putative mediator complex subunit 23" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0034795 MED23 "Mediator complex subunit 23" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040724-82 med23 "mediator complex subunit 23" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8H3 MED23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1307671 Med23 "mediator complex subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5EB59 Med23 "Mediator of RNA polymerase II transcription subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULK4 MED23 "Mediator of RNA polymerase II transcription subunit 23" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I4P3	MED23_ARATH	No assigned EC number	0.7247	0.9632	0.9746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1634
pfam11573		1341	pfam11573, Med23, Mediator complex subunit 23	5e-24

>gnl\|CDD\|221138 pfam11573, Med23, Mediator complex subunit 23	Back alignment and domain information

 Score =  110 bits (276), Expect = 5e-24
 Identities = 138/744 (18%), Positives = 247/744 (33%), Gaps = 127/744 (17%)

Query: 668  MNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 725
            +N D  +     ++   Y+         M  L           S    +     +    P
Sbjct: 478  LNFDMGNDYRLALLCNAYSTNTEYFSRPMPALIETLNGNSKNSSPFGLSYSRQAVNPFVP 537

Query: 726  LPMSLLTGFS-----------LNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLA-- 772
              + +L   +           L   +K A          +     A+VETY+RL++    
Sbjct: 538  FSVEVLDSLTVHSKMSLIHSILTHLIKQAQSKLPVPAVFETAP--ALVETYSRLLVYTEI 595

Query: 773  PHSLFRSLFSHLAQRNPSLLA----KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYD 825
                 R L   L               G    +LE+++YRL      YR Q     L + 
Sbjct: 596  ESLGIRGLLGQLLPLRSLNEVFKSQAWGQLHTLLEMLSYRLHHVHSHYRVQ----LLSHL 651

Query: 826  ITKIISALKVKRGDHRVLRLAENLCMNLILS----------QRDFFSLKREGKGSTEFTE 875
             +    A      + ++    E+  + LI             R     K+     +  +E
Sbjct: 652  HS---LASVNTTNNMQLHSCVESTALRLIQGLGSSEVQNQFSRYLRHCKQPKTIVSPESE 708

Query: 876  TLNRITVIALAIIIKTRGIADADHVLYLQT----MLEQIMATSQHTWSEKTLRYFPSLLR 931
             LN+  ++ LA  +K   I    +    QT     L  IM  + H W E TL  FP  L 
Sbjct: 709  ELNKALILTLARAMK---ITGTGNDPQSQTWCKDFLANIMQNTPHGWPEHTLSCFPPWLN 765

Query: 932  DALIGRIDKRGLTIQAWQQAET-TVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAG 990
            +       K+    +   QA   +V  +  +  S + +   +  +     P    +LC  
Sbjct: 766  EYF-----KQHNVPKEPNQALKKSVEEEYRRWNSMTNENDIIIRFGDPGTPP--LFLCLL 818

Query: 991  AWILMQGHPENIN-SANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 1049
              +LM    E  N S    ++L    P+ +  ++    D ++  +             + 
Sbjct: 819  FKMLMWNQHETDNISPVFYKILERIGPKALVVHLRKFCDYIVAEVSNSQDGNQ-----VN 873

Query: 1050 KACANISFFVLTHELLPLDILLLALIDRD-DDPHALR----IVITLLDRQELQQRVKLYC 1104
            K    I+  +    ++ +D L+L LI R  +   A        + LL   E + RV+ + 
Sbjct: 874  KCIDTINDMIWKFNIITIDRLVLCLILRPHEGNDAQICFQIAQLLLLKTNEFRNRVQEFV 933

Query: 1105 MNRGPPEHWLYSGLFKRV--------------ELQKALGNHLSWKERY-PTFFDDIAARL 1149
             N  PPEHW  S   K                E              + P +F ++  R 
Sbjct: 934  KNN-PPEHWKQSNYHKAHLKYHQKFPEKFAFEESASHPSQPDEPSNVHLPVYFGNVCLRF 992

Query: 1150 LPVIPLIVYRLIENDAMD---SADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG--- 1203
            LPV+ + ++R +E        + D +L   S    ++    +F+ + L Y+   L G   
Sbjct: 993  LPVLDIYIHRYLEQQGYKLSKTLDTILDHLSMLYKFHDRPITFLYNTLHYYERLLRGRDK 1052

Query: 1204 -KLIVRILNVFDLSKIPFS------ESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPA 1256
              L+  I+      +            +    SS      P L Y+  L+  +V      
Sbjct: 1053 KSLVSAIIGSLKDVRPANWALTEAYLKYNMQKSSDEVNW-PELSYYMELIGRMV------ 1105

Query: 1257 LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1316
                     T+D     P           P   ++ R  F +  +P  +    L    IE
Sbjct: 1106 --------DTIDGINPPP-----------PFVATDWR--FNEFPNPPAHA---LYVTCIE 1141

Query: 1317 ILSLPVSASQIVSSLVQIVVNIQP 1340
            +++LPVS  ++ ++L+ ++V   P
Sbjct: 1142 LMALPVSPEKVANALIDVIVKGYP 1165

Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice. Length = 1341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1634
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0
PF11573		1341	Med23: Mediator complex subunit 23; InterPro: IPR0	100.0
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.1e-275  Score=2411.91  Aligned_cols=1400  Identities=23%  Similarity=0.241  Sum_probs=1291.3

Q ss_pred             CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCCcCCCcccccccccccCcchhhHHHHHhh
Q 000341            1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGLVACCGGILLIVEEFMLR   80 (1634)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (1634)
                      |||++  | .+.++.+   +||.++|||+|++++|+|+||+|+.+|+|++.++|+++                       
T Consensus         1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~-----------------------   51 (1517)
T KOG1883|consen    1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIG-----------------------   51 (1517)
T ss_pred             CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCC-----------------------
Confidence            45554  7 6667777   89999999999999999999999999999999999999                       


Q ss_pred             hhhhhHHhhccCCCCCCcchhhhhHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhcccccccc
Q 000341           81 NKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDT  160 (1634)
Q Consensus        81 ~~~~krv~a~~~~~~p~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~~~wd~  160 (1634)
                      ||||+||++-|+++||+||||++||+-++.+|.+.+|.|.++|++|+++|.||++||||++|++|   .||++|||+  +
T Consensus        52 d~t~~r~~~~n~~~qe~~eQ~ll~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~li~--t  126 (1517)
T KOG1883|consen   52 DETALRIQFGNMMMQEKEEQSLLKELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGLIM--T  126 (1517)
T ss_pred             chhhHHHhcCCCCCCchhHHHHHHHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHHhh--c
Confidence            99999999999999999999999999999999999999999999999999999999999999999   899999999  9


Q ss_pred             cHHHHhhhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccccccc
Q 000341          161 FLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAM  240 (1634)
Q Consensus       161 ~l~~ll~~~~~~e~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~sp~~~~~~~~~~~~~  240 (1634)
                      +|+++.|+++.+|.+..|++++.....+    ...++|.                 -|.|+||+ +|..+..|+--    
T Consensus       127 ~l~~l~s~i~ae~~kli~~vi~~vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V~----  180 (1517)
T KOG1883|consen  127 SLFRLCSRIWAEKFKLINDVIPKVDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQVN----  180 (1517)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhhhchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHHH----
Confidence            9999999999999999999998544433    2233432                 46788888 77765544321    


Q ss_pred             cccccCCCCCCCC---cccccccccccchhhhhhhhhhHHHhhhhcccccccccHHHHHHHHHHHHHhccccccCCCccC
Q 000341          241 SPVKSSDVSCTGQ---QFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESD  317 (1634)
Q Consensus       241 ~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l~~l~c~i~l~~le~~lkp~t~~~i~~~~~~w~~~wd~~~~g~~~~~  317 (1634)
                            .|-.+|+   ....|++...+.       ++.|++|+.|.+.  ||++|++++++|.+|+|+| ++..|+++.=
T Consensus       181 ------Qi~~a~~vir~i~dRns~llpa-------~~~~~eImrg~p~--~~l~h~~l~~~m~d~vv~f-R~~a~~~~i~  244 (1517)
T KOG1883|consen  181 ------QILAAENVIRHIVDRNSCLLPA-------YFTLSEIMRGMPK--QALMHWRLTELMADFVVHF-RPTADLSSIC  244 (1517)
T ss_pred             ------HHHHHHHHHHHHHhccccccch-------HHhHHHHHhcCCc--ccccHHHHHHHHHHHHHHh-cccccchhhc
Confidence                  3444555   556778877776       8999999999998  9999999999999999999 8888998888


Q ss_pred             CccccchhHHHHHHHHHHHHHHHHhcCCCcccchHHHhhccccccccCCChhHHHHHHHHHhhchhhHHHHHhhhccccC
Q 000341          318 GKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLH  397 (1634)
Q Consensus       318 ~~~~~~~~~~~~w~~~cl~viw~lv~e~~~rvpfy~ll~~~~q~~e~~pddeal~~l~~e~hrrrd~~~~hm~~ldqhlh  397 (1634)
                      +++|++++.+++| .+|||++|.|+-++ -|.|||+++|++.+++|++|||+|||++|||+|+|||.|||||+|.|||+|
T Consensus       245 Gr~~~~pi~l~~~-~~~l~~~W~l~~~~-~r~pf~~~~~slpy~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~~qk~r  322 (1517)
T KOG1883|consen  245 GRGSVLPIVLHPG-FYPLTNSWELDGLT-LRFPFKGPHHSLPYRPELTETQLALLRYILEQPYSRDVMAMLSLHKPQKQR  322 (1517)
T ss_pred             ccccccccccccC-cccchhhheecccc-ccccccccccccCCChhhccchHHHHHHHHhhhcchhHHHHhhcCchhhhc
Confidence            9999999999999 99999999998888 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccCcccccccccccccccccCCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhh
Q 000341          398 CPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVL  477 (1634)
Q Consensus       398 cptf~t~~~~~~~~~~~~~~~~~~lr~s~~ty~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~w~~vl  477 (1634)
                      ||||++|||.++.+.++-.||+.++|.|||+       +|.||+++++|.+|+|   ++++|+||++|++|      ++|
T Consensus       323 cp~~~e~lI~~~I~a~e~~EAe~~~~~spi~-------~l~w~~Ls~~liygvl---~~~~~~~h~v~~l~------~~L  386 (1517)
T KOG1883|consen  323 CPTLEEQLISLMICAMEMAEAESLPETSPIP-------RLQWDHLSSQLIYGVL---FQFLSFKHFVLVLH------NKL  386 (1517)
T ss_pred             CCcHHHHhHHHhhhccccccccccccCCCCC-------hhHHHHHHHHHHHHHH---HHHHhHHHHHHHHH------HHH
Confidence            9999999999999999999999999999999       9999999999999999   99999999999998      999


Q ss_pred             eeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHccccc--------------ccccchhhhHhhhhHHHHHHhcccc
Q 000341          478 LVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTN--------------SEVNCWHDWLIFSDVFFFLVKSGCI  542 (1634)
Q Consensus       478 ~~ap~~~~~~~-~~~~~~~f~~~mi~ea~i~r~~~ll~~~~--------------~~~~~w~eWl~fsd~f~fl~~~~~~  542 (1634)
                      +++||||...| ++.+|+||+++|+|+|.+||++|++|++|              +.-+||++|+.|+|+|+||+|.||.
T Consensus       387 ~~~~~~r~rdq~mwI~~qviss~i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~~r~la~~~iwi~L~Kka~~  466 (1517)
T KOG1883|consen  387 KRCKLTRGRDQLMWILLQVISSSIQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALFARFLAAACIWIHLEKKACT  466 (1517)
T ss_pred             hhcCcccccchhheeeHHHhhhhhhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHHHHHHHHhhhhhhhhhhhcc
Confidence            99999999999 99999999999999999999999999832              2238999999999999999999999


Q ss_pred             cHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhhhccccccchhhhhhhcccccCCCCCCCCcchhhhhhc
Q 000341          543 DFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFIS  622 (1634)
Q Consensus       543 df~~fi~kL~~r~~~gd~~~~~~nhv~wllaq~i~~~~v~~~~~~~~~~v~t~~~ilsf~~~d~~~d~n~pqs~~~df~~  622 (1634)
                      ||.|++++|        +|++|+ |+ |+|+|++|.+++|    +|..|++++++|+  |++|+..|+++|++.|||+++
T Consensus       467 Df~d~~~pl--------nh~Lr~-H~-~fLqq~vr~~~~m----~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~  530 (1517)
T KOG1883|consen  467 DFADKMPPL--------NHTLRS-HI-KFLQQGVRNFDSM----SNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESIS  530 (1517)
T ss_pred             chhhccCcc--------cHHHHH-HH-HHHHHHHHhhhhc----cchHHHHHHHHHH--hccccccccCCcHHHHHHHHh
Confidence            999999999        889998 88 9999999999999    7899999999999  999999999999999999999


Q ss_pred             cccceEEEeeccchHHhhcHHHhhhhhhHHHHHHHhhcccccccccccCccceeeeeeehhcccchhhhHHHHhhccCcc
Q 000341          623 SCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGV  702 (1634)
Q Consensus       623 s~q~l~iw~~n~~~~~~l~~~~~q~~k~~~eww~~~~kg~~~~d~~n~DD~~iamL~vlssT~a~P~~Dtvm~~l~~~~v  702 (1634)
                      ||||+|||.+.+++|++++++++-+++ +|+||...     ||||+++||+.++++|++..++|||.|+...+|.++++.
T Consensus       531 ~~~t~ri~~lst~~~A~~~~t~lpv~~-lDslt~~s-----kmsli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~  604 (1517)
T KOG1883|consen  531 SNGTKRIPELSTKRMAVNSFTALPVEF-LDSLTVHS-----KMSLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYE  604 (1517)
T ss_pred             cCCccccCCCCcceeeecccchhhHHH-HHHHHHHH-----HHHHHHhcccccceeEEEEecccccchhhhhccccchhh
Confidence            999999999999999999999999999 99999966     899999999999999999999999999889999977666


Q ss_pred             ccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhhhcCCccCChhHHHHHHHhhhcccc-hhhHhh-
Q 000341          703 TELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH-SLFRSL-  780 (1634)
Q Consensus       703 ~e~ipG~~~~pn~~i~a~~~~~PLpmsLLDsLTvh~KmsLi~qI~~~lf~~~~vPSPAlVETYsRLLvyte~-sL~~k~-  780 (1634)
                      .+ .+                                                     .+|||+|+++|+|+ ++++|+ 
T Consensus       605 ~~-~~-----------------------------------------------------~le~~arllv~~ei~sl~isg~  630 (1517)
T KOG1883|consen  605 MA-VA-----------------------------------------------------LLETYARLLVYVEIESLGISGE  630 (1517)
T ss_pred             hh-hc-----------------------------------------------------ccchhhhhheeeeeeccccCch
Confidence            65 33                                                     45666666666666 455555 


Q ss_pred             -----------hhhhhhcCchhhh--hcchhhHHHHHhhccc---cccccccCcchhHHHHHHHHHHhhccccchhHHHH
Q 000341          781 -----------FSHLAQRNPSLLA--KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLR  844 (1634)
Q Consensus       781 -----------f~~LsQ~~psv~k--a~giL~~LLEilSYRL---~p~YRyq~ks~~llhsL~~ii~~~~nq~q~H~llr  844 (1634)
                                 |  ++|.+|+|++  +|+.+|+++|++|||+   +++||+|+.+.  +|.+..+  ++.|++|.|.   
T Consensus       631 ~~~~~~~~~~~F--lsqllptv~~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~--l~~~~lv--p~~~~~g~h~---  701 (1517)
T KOG1883|consen  631 HQNVQAKDQCYF--LSQLLPTVFKHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR--LHELFLV--PQTNWAGLHL---  701 (1517)
T ss_pred             hhhhhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHhh--HHHHhhhhhh---
Confidence                       6  8999999999  9999999999999999   89999999996  9988777  8999999998   


Q ss_pred             HHHHHHHHHHHhhcc---------ccccccCCCCcchhhHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCC
Q 000341          845 LAENLCMNLILSQRD---------FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQ  915 (1634)
Q Consensus       845 ~lEs~~LRLIlsL~s---------f~~vq~~~~~ps~~SEELNR~LILTLARsiKitGiad~~~g~~~k~~L~~Im~ntp  915 (1634)
                      |+|++++|+|+++|+         ||..|.||++|++|||||||++|+||||++||||++|.++|+|||+||++|+++||
T Consensus       702 ci~s~a~rliTalk~ae~~~q~~~ffs~k~pg~~psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml~tIi~~t~  781 (1517)
T KOG1883|consen  702 CIESTALRLITALKSAEMQPQFARFFSDKVPGQVPSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTMLPTIINTTP  781 (1517)
T ss_pred             hHHHHHHHHHHHhcccchhHhHhhhcccCCCCcCcccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHhcCC
Confidence            999999999999987         99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhccCc-HHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHhccCCCCChhhHhhhhcccCCCCCcchHHHHHHH
Q 000341          916 HTWSEKTLRYFP-SLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWIL  994 (1634)
Q Consensus       916 h~WpekTLr~FP-~~Lre~f~~~~D~~~l~~q~~qql~ttV~ee~rq~~Sms~E~~~V~~yi~hf~p~~~~fLC~l~~ml  994 (1634)
                      |+||+||++||| ..|.++|.+|    |.++++|||++|+|+||||+|+||+|||+||..|+.|.  .+|+|||+++...
T Consensus       782 h~W~ektls~FP~~aL~a~~~q~----~~~~en~qql~~~V~ne~r~~tSmsnen~~V~~yl~~~--~p~~~lCll~~~~  855 (1517)
T KOG1883|consen  782 HGWPEKTLSCFPKWALDAIFAQN----NSPAENTQQLKKDVENEYRMWTSMSNENDIVIHYLEDR--DPPLFLCLLFAYK  855 (1517)
T ss_pred             CCCchhhhhhCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhccCC--CchhHHHHHHHHH
Confidence            999999999999 6777777766    89999999999999999999999999995555555553  4699999996666


Q ss_pred             hhCCCCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhccccCCchhHHHHHHHhHhhhhhhhccccchhhhhhhh
Q 000341          995 MQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLAL 1074 (1634)
Q Consensus       995 ~e~~~e~I~~~~lyrVLe~isprevta~ir~fvDyLv~e~~~elq~g~~~Q~lv~kcv~~LndmIWkynIVpLDRLLL~L 1074 (1634)
                      |.+++||||+++ |||||++||||+++|+||||||||++++    .++++|++++||+++||+||||||++|+|||||||
T Consensus       856 m~~~teNIns~~-yrVLe~isprelva~~~tlvDyLvad~~----t~~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~L  930 (1517)
T KOG1883|consen  856 MVDETENINSEF-YRVLEKISPRELVAHGRTLVDYLVADAK----TSDCGEKTLKKCAKALALMVWKFNVLTLDRLLLCL  930 (1517)
T ss_pred             hcccccccCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhhh----cccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            766799999999 9999999999999999999999999887    57789999999999999999999999999999999


Q ss_pred             ccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCccccccc------hhhhhhHHH---HhccC--CCCCCC
Q 000341         1075 IDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL------FKRVELQKA---LGNHL--SWKERY 1138 (1634)
Q Consensus      1075 alR~dEgn-----aliIqlLLL~~~EFqqRV~~Fv~~~~spEHW~qs~~------fhrkfPEk~---lg~~l--s~~~~l 1138 (1634)
                      |+|++||+     ++|||++|+++ |||+||++||++ |+||||+ ++|      ||++|||++   ++++.  +.++||
T Consensus       931 imr~~~~nda~vc~~Ia~~lLltp-df~~RI~~yck~-nsPeHwl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~l 1007 (1517)
T KOG1883|consen  931 IMRPHEGNDAQVCIQIAQLLLLTP-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHVKYHKAYPEKEACELARQYDSSSNVHL 1007 (1517)
T ss_pred             hcccccCCcchhHHHHHHHHhcCH-HHHHHHHHHHhc-CCcchhh-HHHHHHHHHHHHhcchHHHHHHHHhcCCccccCC
Confidence            99998887     55556666555 999999999997 9999999 888      899999965   55553  447899


Q ss_pred             CcchhhHHHhhcCchhHHHHHHHhcCc-hhhHHHHHHhhccccccCCccchhhhHhHHhhhcCCch-----HHHHHHHhh
Q 000341         1139 PTFFDDIAARLLPVIPLIVYRLIENDA-MDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG-----KLIVRILNV 1212 (1634)
Q Consensus      1139 PvYFGNVcLR~LPViDiVIhR~LE~~~-~k~letLL~~~g~LYkYHd~PvTFvY~tLhYy~~~L~~-----kLV~~ILg~ 1212 (1634)
                      |+||||||+|||||+|+|+|||||+++ .|.+++||+|+|.||||||+|+|||||||||||+||++     |||.+|.++
T Consensus      1008 Ptyf~~v~~RlLPV~d~vlhr~lE~~~~~k~~~~lL~hls~lykfH~~pitflyntl~y~~~hL~~~p~kk~lv~a~~~~ 1087 (1517)
T KOG1883|consen 1008 PTYFGNVCLRLLPVMDQVLHRFLELQGVEKLLPQLLDHLSMLYKFHDRPITFLYNTLHYYEHHLRDRPLKKKLVLAIATQ 1087 (1517)
T ss_pred             ccHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHhhhhcCcchhhHHHHHhhh
Confidence            999999999999999999999999999 69999999999999999999999999999999999944     899999999


Q ss_pred             cccCCCCCCcchhhhccCCCCCCCCChhHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCC
Q 000341         1213 FDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEG 1292 (1634)
Q Consensus      1213 Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~~~p~~~s~~ 1292 (1634)
                      |++  ++|||+|.+|+++++..|||+++|||.||+||||++.+              ++              +|+|+.+
T Consensus      1088 lse--i~lSE~f~k~~~q~~ap~~pel~y~~sLi~rLvdt~~~--------------~l--------------~~~f~nc 1137 (1517)
T KOG1883|consen 1088 LSE--IRLSEAFEKFNHQKGAPWSPELDYYMSLIDRLVDTLDG--------------KL--------------TPPFVNC 1137 (1517)
T ss_pred             hhh--CccchhHHHHhccCCCCCCCcHHHHHHHHHHHHhhcCC--------------CC--------------CCCCccc
Confidence            988  66999999999999999999999999999999988843              21              2356669


Q ss_pred             CcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhhhcc----------------------------------
Q 000341         1293 RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNI---------------------------------- 1338 (1634)
Q Consensus      1293 DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLVdvvv~~---------------------------------- 1338 (1634)
                      ||||+||+||++||+||   +|||+|++|++|..++++|+|++++.                                  
T Consensus      1138 dwR~~e~~n~~a~al~~---~cvelma~~~sgp~~asalinv~~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l~d~lv 1214 (1517)
T KOG1883|consen 1138 DWRFNEFPNPGAHALYV---TCVELMALPVSGPTVASALINVMQMKQHARPFNQLIVNATGLLITALPEPYWNALHDRLV 1214 (1517)
T ss_pred             ccccccCCCcccccccc---chhhhcCCCCCcHhHHHHHHHHHhhCCCCCchhHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            99999999999999985   77999999999998888877766544                                  


Q ss_pred             ------CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHHHHHHH
Q 000341         1339 ------QPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGL 1412 (1634)
Q Consensus      1339 ------~~~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~~~~~~~~~~giN~s~~~~~~~~~~~~~s~l~INAiGL 1412 (1634)
                            +.+.+|+++|+||.-+|+|+++++|++||+|.|++ +.++|+-.|+|||.-+|+||+ |||++++|..++++||
T Consensus      1215 ~vivnp~~t~~t~~~gf~~~~fd~~~~s~l~~~ps~a~Tl~-a~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkte~~ll 1292 (1517)
T KOG1883|consen 1215 AVIVNPQSTGETANLGFEFILFDFYEESLLLNEPSRARTLN-AISHSVWLHCSISLLSFFSRE-YTERLLPCVKTEKQLL 1292 (1517)
T ss_pred             HHHcCccccchhhcCCCceeeccccchhccccCCccchhhH-HHHhHHHhhcchHHHHhhhHH-hHHHHHHHHHHHHHHH
Confidence                  44567889999999999999999999999999999 999999999999999999999 9999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHHhcc-CccccCCCCCcccccccccccccCCcccccccCc-chhHHHHH-HHHHHHhcCChh
Q 000341         1413 LLAQLPPDFHMQLYMEASRIIKE-SWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS-TAIGNIVA-LLHSFFSNLPQE 1489 (1634)
Q Consensus      1413 LLAaLP~~f~~~ly~ei~~vik~-~w~l~d~k~s~~elDs~~~y~l~d~t~a~q~~t~-t~~~~ilA-L~Ha~~~h~~~~ 1489 (1634)
                      .+++||.+|+..+|.|..|..-+ .||++|++.+.+|.|  +||...||.|+.++|+. +.+|++++ .+|++|.+++.+
T Consensus      1293 yl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~--v~l~ymdpicd~~yn~ky~~~Gdivkn~~~a~f~nLp~~ 1370 (1517)
T KOG1883|consen 1293 YLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG--VELVYMDPICDFLYNCKYFFAGDIVKNTAEAIFANLPPK 1370 (1517)
T ss_pred             HHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC--CceeecchHHHHHhhhhhhhhhHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999998 899999999999988  99999999999999988 99999999 999999999999


Q ss_pred             hhhhHHHHHhhcCccchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhc
Q 000341         1490 WLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLH 1569 (1634)
Q Consensus      1490 ~L~~~~~~i~~LrPv~TeaqL~~~~rLvGP~L~R~~~eR~~~~k~l~lll~~L~~vVdKnsq~~~~vels~iD~ICDFLY 1569 (1634)
                      |..++.-++.+.||+++.++...+++.+||.+||.....+.+.++...+.--..+++||..|..+.++....++..|+.+
T Consensus      1371 l~drlrfi~~~s~p~~~~at~~~~~~s~~~~~pa~sS~q~p~~~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~~~~qq 1450 (1517)
T KOG1883|consen 1371 LRDRLRFITHQSEPTEEQATPPEKENSPEESTPAVSSLQAPLLPSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSNHPTQQ 1450 (1517)
T ss_pred             HHhhhhhhhhcccccccccccchhhcCcccCCcccccccCccCchhhhCCCccCCchhhhhhhhhHHHHHHHHhcchHHH
Confidence            99999988899999999999999999999999999999899999988888888899999988888899999999999999


Q ss_pred             eeeEEeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhcccCCCCCCchhhccCcccc
Q 000341         1570 HVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMV 1630 (1634)
Q Consensus      1570 HIYMFVG~g~~~qd~~K~~vE~l~l~~kiI~~LrP~LQ~rLrHL~~d~~ss~~aa~h~~~~ 1630 (1634)
                      |+-+++||||.||.++|+.+.+|+++|+|-+-++|.+||.+.|.+..+++++||+.|..+.
T Consensus      1451 qlqhq~~n~~~vQt~s~p~p~~l~~~g~~~~~~~~y~qHmqqH~h~~~~~~~~a~~h~~n~ 1511 (1517)
T KOG1883|consen 1451 QLQHQIPNMSMVQTMSPPYPGFLHPSGPVGHVPMQYGQHMQQHPHLPHHQQMPAPMHTMNP 1511 (1517)
T ss_pred             HHHHhccccceeeecCCCCCccccccccccccchhhHHHHHhccCCCccccCCcchhccCc
Confidence            9999999999999999999999999999999999999999999999999999999997653

>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity	Back alignment and domain information

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1634
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 77.6 bits (190), Expect = 3e-14
 Identities = 96/636 (15%), Positives = 186/636 (29%), Gaps = 189/636 (29%)

Query: 825  DITK-IISA------LKVKRGDHRVLRLAENLC----------MNLILSQR-DFF--SLK 864
            D+ K I+S       +  K      LRL   L           +  +L     F    +K
Sbjct: 40   DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 865  REGKG----STEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI---------- 910
             E +     +  + E  +R+       +     ++     L L+  L ++          
Sbjct: 100  TEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 911  MATSQHTW-------SEKTLRYFPSLLRDAL----IGRIDKRGLTIQAWQQAETTVINQC 959
            +  S  TW       S K            +    +   +     ++  Q+    +    
Sbjct: 158  VLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 960  TQLLSPSADPTY----VKTYLSHSFPQHRQY----LCAGAWILMQGHPENINSANLL--- 1008
            T     S++       ++  L     + + Y    L     +L      N+ +A      
Sbjct: 214  TSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLL-----VL-----LNVQNAKAWNAF 262

Query: 1009 ----RVLREFSPEEVTSNIYTMVDVL---------LHHIHVELQRGHSLQDLLFKACANI 1055
                ++L       +T+    + D L         L H  + L         L     + 
Sbjct: 263  NLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC 313

Query: 1056 SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 1115
                L  E+L  +   L++I                                   ++W +
Sbjct: 314  RPQDLPREVLTTNPRRLSIIAESIRDGLATW------------------------DNWKH 349

Query: 1116 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPV---IPLIV-----YRLIENDAMD 1167
                K   + ++  N L   E Y   FD ++  + P    IP I+     + +I++D M 
Sbjct: 350  VNCDKLTTIIESSLNVLEPAE-YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 1168 SADRVLATYS--------SFLAYYPLRFSFVRDILAYFYGHLPGKLIV---RILNVF--- 1213
              ++ L  YS        S ++   +       +   +  H   + IV    I   F   
Sbjct: 407  VVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 1214 DLSKIPFSESFPQHIS--SSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL 1271
            DL      + F  HI     N      +  F  +           L++       ++  +
Sbjct: 463  DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------LDFR-----FLEQKI 507

Query: 1272 RAPHNKSPMTSQSGPSNVSEGRKEFYQN----QDPGTYTQLVLETAVIEILS-LPVSASQ 1326
            R  H+ +   +     N    + +FY+      DP  Y +L     V  IL  LP     
Sbjct: 508  R--HDSTAWNASGSILNTL-QQLKFYKPYICDNDP-KYERL-----VNAILDFLPKIEEN 558

Query: 1327 IVSS----LVQIVVNIQPTLIQTSNGPYGASNSVGQ 1358
            ++ S    L++I       L+      +  ++   Q
Sbjct: 559  LICSKYTDLLRI------ALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00