Citrus Sinensis ID: 000380
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1601 | 2.2.26 [Sep-21-2011] | |||||||
| P84634 | 1702 | Dicer-like protein 4 OS=A | yes | no | 0.965 | 0.908 | 0.568 | 0.0 | |
| A7LFZ6 | 1657 | Endoribonuclease Dicer ho | yes | no | 0.956 | 0.923 | 0.502 | 0.0 | |
| Q5N870 | 1651 | Endoribonuclease Dicer ho | no | no | 0.946 | 0.918 | 0.337 | 0.0 | |
| Q7XD96 | 1637 | Endoribonuclease Dicer ho | no | no | 0.928 | 0.907 | 0.324 | 0.0 | |
| Q3EBC8 | 1388 | Endoribonuclease Dicer ho | no | no | 0.820 | 0.945 | 0.325 | 0.0 | |
| Q10HL3 | 1410 | Endoribonuclease Dicer ho | no | no | 0.820 | 0.931 | 0.325 | 0.0 | |
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | no | no | 0.914 | 0.766 | 0.300 | 1e-180 | |
| Q69LX2 | 1377 | Endoribonuclease Dicer ho | no | no | 0.773 | 0.899 | 0.320 | 1e-172 | |
| Q9LXW7 | 1580 | Endoribonuclease Dicer ho | no | no | 0.896 | 0.908 | 0.284 | 1e-156 | |
| Q8LMR2 | 1883 | Endoribonuclease Dicer ho | no | no | 0.695 | 0.591 | 0.299 | 1e-135 |
| >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1754 bits (4544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1592 (56%), Positives = 1134/1592 (71%), Gaps = 46/1592 (2%)
Query: 50 KTDKDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICI 109
K +KDP++IAR+YQ+ELCKKA EEN+IVYLGTGCGKTHIAV+LIYEL HL+ P+KS+CI
Sbjct: 115 KMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCI 174
Query: 110 FLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYC 169
FLAPTVALV+QQAKVI +S+ FKV CGG + +KSH +WE+EI EVLVM PQILL+
Sbjct: 175 FLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHN 234
Query: 170 LYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKG 229
L H FIKME I+LLIFDECHHAQ +SNHPYA+IMK FYK + ++ PRIFGMTASPVVGKG
Sbjct: 235 LQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKG 294
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289
+ NL KSINSLENLL+AKVYSVE L+ FVSSP+V+VY Y ++D S S +
Sbjct: 295 SFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYE 354
Query: 290 EQLAEIKREQYIS-ALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILL 348
L +IK+ S L H Q+L + + L R HD++ + L NLG+ GA+ A+ I L
Sbjct: 355 NMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQL 414
Query: 349 SGDETMRNELIEAEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSK 407
+ D +++E + G +C + S A+E ++ +D ASDL + LKEP FS+
Sbjct: 415 NSDHNVQDEPV---GKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALKEPLFSR 471
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL++LI ILS FRL+ HMKCI+FVNRIVTAR LS IL NL+ L SW+ FLVG+++GLKS
Sbjct: 472 KLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKS 531
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARM 527
MSR +M++IL++F+S ELNLLVATKVGEEGLDIQTCCLVIR+DLPETV SFIQSRGRARM
Sbjct: 532 MSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARM 591
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACI 587
PQSEYAFLVDSGN++E+DLI+NF EDRMN EI R+S + +E +YKV +GACI
Sbjct: 592 PQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHETGACI 651
Query: 588 SAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTICHIILPANAPIHQIVGTPQS 645
S G +SLL++YCS+LPHDEFF PKP+F + D+ GGTIC I LPANAPI +I +
Sbjct: 652 SGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLP 711
Query: 646 SMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEG-SRGELH 704
S EAAKKDACLKA+ +LH LG LND+LLP + EDE D D+ +GEG SRG+L+
Sbjct: 712 STEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGDLY 771
Query: 705 EMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLH 764
EM VP + +Q W S V L+ Y++ F+P PADRIY++FG F+KS LP EAE + +DLH
Sbjct: 772 EMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAETMDIDLH 831
Query: 765 LARGRSVMTKLVPSGIMQ--------AQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESS 816
LA RSV K+ PSG+ + A+ FQE+ LKV+ +R E +FVPL D +S
Sbjct: 832 LAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTS 891
Query: 817 SSTFYLLLPVIFHKN----SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWS 872
STFYLLLP+ H SVDW IR CLSSP+F TP V+ PS L+L NG
Sbjct: 892 KSTFYLLLPLCLHDGESVISVDWVTIRNCLSSPIFKTPSVLVEDIFPPSGSHLKLANGCW 951
Query: 873 SESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQP 932
+ DV+NSLV+ T+ K FY V +I +NG+SP K+S + SHV+ + YG+ LKHP QP
Sbjct: 952 NIDDVKNSLVFTTYSKQFYFVADICHGRNGFSPVKESSTKSHVESIYKLYGVELKHPAQP 1011
Query: 933 LLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSI 992
LLR KPL +RNLLHNR + E EL+EYF ++PPEL LKI G SKDIGSSLSLLPSI
Sbjct: 1012 LLRVKPLCHVRNLLHNRMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSI 1071
Query: 993 MHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKY 1052
MHR+ENLLVAIELKH+LSAS PE AEVS +L+ALTTEKC ER SLERLE+LGDAFLK+
Sbjct: 1072 MHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKF 1131
Query: 1053 AVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRR 1112
AV RHLFL HD++DEGELTRRRSN VNNSNL +LA + NLQVYIRDQ DP QFFA G
Sbjct: 1132 AVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGHP 1191
Query: 1113 CPRICSKETERTIHS-QYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSG 1171
C C + + +HS D + E+RCSKGHHWL+KKTIADVVEALVGAF+ DSG
Sbjct: 1192 CRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVDSG 1251
Query: 1172 FKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQ 1231
FK A FLKWIG+ V+FE+ QV + CI+S+ +LPL+ ++ TLE L ++FLH+GLL+Q
Sbjct: 1252 FKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQ 1311
Query: 1232 AFVHPSFNRL-GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFA 1290
AF+HPS+NR GGCYQRLEFLGDAVLDYL+TSY ++V+PKLKPGQLTDLRS+ VNN+A A
Sbjct: 1312 AFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALA 1371
Query: 1291 NVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAI 1350
NVAV S +FL +S L E I +Y +++ + EGPRCPKVLGDLVES LGA+
Sbjct: 1372 NVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGAL 1431
Query: 1351 LLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLA 1410
LD GFNLN VW +MLSFLDP+ SNLQ++PI+EL+ELC SY D + + KK G F
Sbjct: 1432 FLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTV 1491
Query: 1411 EAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSE 1470
E KVT + +SA N ++E + A+Q + + LKA + + LE +LK+ ++E
Sbjct: 1492 ELKVTKNGCCLTVSATGRN--KREGTKKAAQLMITNLKAHENITTSHPLEDVLKNGIRNE 1549
Query: 1471 ARLIGYDETPINVVAADDNVFEKLKISEPQGGSSCDIGS----------PSLT------- 1513
A+LIGY+E PI+VV E L I E GG+S S PS T
Sbjct: 1550 AKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLPQAPSKTEDRLPQK 1609
Query: 1514 ----TGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-APEKI 1568
GG +++A+S L+E C ANCWKPP F+CC+EEG HLK F ++VI+E+E AP
Sbjct: 1610 AIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMT 1669
Query: 1569 IECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
+EC GE +A KKGAAEHAA+ +WCL+ G+L
Sbjct: 1670 LECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1701
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Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1479 bits (3830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1643 (50%), Positives = 1067/1643 (64%), Gaps = 112/1643 (6%)
Query: 53 KDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA 112
KDP+ IARKYQL+LCK+A+EENIIVYLGTGCGKTHIAVLLIYEL HLIRKP + +CIFLA
Sbjct: 24 KDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLA 83
Query: 113 PTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
PT+ LV+QQA VI S FKV+ + G K + H +WE ++ ++EVLVM PQILL L H
Sbjct: 84 PTIPLVRQQAVVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILLQSLRH 143
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD-IMKVPRIFGMTASPVVGKG-- 229
FIKM IALLI DECHHAQ + HPYA+IMK+FY + + K PR+FGMTASP++GKG
Sbjct: 144 CFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGMTASPIIGKGVM 203
Query: 230 ------------------------ASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVS 265
S + N K INSLE LL AKV SV D E+LES V+
Sbjct: 204 PSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVA 262
Query: 266 SPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLH 325
SP + VY YGPV + S+ C ++L +K Q L L D + + K L RLH
Sbjct: 263 SPDMEVYFYGPV--NHSNLTTICIKELDSLKL-QSERMLRASLCDFKDSQKKLKSLWRLH 319
Query: 326 DSMKFCLENLGVCGALHASYILLS--GDETMRNELIEAEGNTIDDSLCRFASQASEVFAA 383
+++ FCL+ LG GAL A+ LS GD+ R E+ ++ S FA +
Sbjct: 320 ENIIFCLQELGSFGALQAARTFLSFDGDKLDRREV------DLNGSTSSFAHHYLNGATS 373
Query: 384 ICRR---DGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARAL 440
I R DG + +E L+EPFFS K LI +LS + LQ++MKCIVFV RI ARA+
Sbjct: 374 ILSRNKTDGSHAGSFDLEKLEEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAI 433
Query: 441 SYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDI 500
S ILQNLK L W+C FLVG ++G K+MSRN M +I+++F SGE+NLLVAT VGEEGLDI
Sbjct: 434 SNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDI 493
Query: 501 QTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNRE 560
QTCCLV+RFDLPETVASFIQSRGRARM +S+Y L++ NQ L+ + E MN E
Sbjct: 494 QTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEE 553
Query: 561 IMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDD 620
I RTS+D F C EE IY+VD++GA IS VSLLH YC LP D FF P P F+Y D
Sbjct: 554 IDSRTSNDMFDCLEENIYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDG 613
Query: 621 LGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNAT 680
+ G IC +ILP NA Q G P S + AK+DACLKA LHKLGAL D+LLP +
Sbjct: 614 IEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRK 673
Query: 681 EDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRI 740
+ +S ++ E + R ELHEML+PAVL+ S K L+FY+++FIP P DR
Sbjct: 674 NKVSVTNNSSNNKVEDDSLREELHEMLIPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRR 733
Query: 741 YREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG--------IMQAQQFQEMFLK 792
Y+ FGLFV + LP EAE L+VDLHLARGR V + G +M A +FQEM LK
Sbjct: 734 YQMFGLFVINPLPVEAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCLK 793
Query: 793 VILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPV----IFHKNSVDWKIIRRCLSSPVFG 848
++LDRSEF S V LG D E +STFYLLLP+ + +DW + RCLSSP+F
Sbjct: 794 ILLDRSEFTSPHVKLGNDVTLE-INSTFYLLLPIKQKCYGDRFMIDWPAVERCLSSPIFK 852
Query: 849 TPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKD 908
P S S+ L+L +G S++DV S+V++ H F+ V I+ E N +S +
Sbjct: 853 DPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEH-- 910
Query: 909 SDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLE--DSESHELEEYFDDL 966
+++ +H + I L HP+QPLL+AK +F LRNLLHNR E +SE EL E+F +L
Sbjct: 911 -SGATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGRELLEHFVEL 969
Query: 967 PPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLK 1026
PPELC LK+IGFSKD+GSSLSLLPS+M+RLENLLVAIELK ++ +SFPE +++SA +L+
Sbjct: 970 PPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASGILE 1029
Query: 1027 ALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKL 1086
ALTTEKC ER SLER E+LGDAFLKY VGRH F+ ++ +DEG+LTRRRS+ VNNS+L +L
Sbjct: 1030 ALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYEL 1089
Query: 1087 AARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKG 1146
+ R LQVYIRDQ F+P QFFA GR C +C+ + E +H Q D + N +RC++
Sbjct: 1090 SIRKKLQVYIRDQQFEPTQFFAPGRPCKVVCNTDVEVRLH-QMDIHPDNRENCNLRCTRS 1148
Query: 1147 HHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPL 1206
HHWLH+K IADVVE+L+GAF+ + GFKAA AFL WIGI V+F + + SS L L
Sbjct: 1149 HHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSL 1208
Query: 1207 SASLDMATLEILLGHQFLHRGLLLQAFVHPSFNR-LGGCYQRLEFLGDAVLDYLITSYLY 1265
D+A LE L+G++F H+GLLLQAFVHPSF++ GGCYQRLEFLGDAVL+Y+ITSYLY
Sbjct: 1209 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1268
Query: 1266 SVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSS 1325
S YP +KPGQ+TDLRS+ V N + A AV++S +K LI DSN L+ I+ + Y+ +S
Sbjct: 1269 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1328
Query: 1326 TREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRE 1385
+++ E P CPK LGD+VES +GA+LLDSGFNLN VWK+ML L P+L F+N+ NP+RE
Sbjct: 1329 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1388
Query: 1386 LLELCNSYDLDLQFPS-LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLF 1444
L ELC + +L P +K G++ + +V K K I A N + K A + A+Q+
Sbjct: 1389 LRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSK--IIICTAANRNSKAARKFAAQETL 1446
Query: 1445 SKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVA-----------ADDNV-FE 1492
SKLK GY + KSLE IL + K E+ LIGY+E PI+V A ++N+ F+
Sbjct: 1447 SKLKNYGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQ 1506
Query: 1493 KLKISEPQ----------GGSSCDIGS-----PSLTT-------------------GGLQ 1518
+ S + G D+ + P L T G +
Sbjct: 1507 NTETSFTRSSKFHNQIIAGSGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVYHGDMV 1566
Query: 1519 NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-APEKIIECIGEPQA 1577
+++ARS L+ELCAAN WKPP F CKEEG SHL+ FT++V+VEI+ A ++EC + +
Sbjct: 1567 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKL 1626
Query: 1578 KKKGAAEHAAEGMLWCLEREGYL 1600
+KK A EHAA+G LWCL++ G+L
Sbjct: 1627 QKKAAQEHAAQGALWCLKQLGHL 1649
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Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1675 (33%), Positives = 848/1675 (50%), Gaps = 159/1675 (9%)
Query: 43 ESSVGAQKTDKDPKQ--IARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLI 100
E G QK K Q R+YQL++ + AM N I L TG GKT IAV+LI E +
Sbjct: 14 EHEAGKQKLQKRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKIN 73
Query: 101 R-KPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLK-SHCDWEKEIDQYEV 158
R K + IFLAPTV LV QQ +VIE F+V + G + + W+++I +Y+V
Sbjct: 74 RTKNAGKVIIFLAPTVQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQV 133
Query: 159 LVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIF 218
+VM PQ+ L L + F+ +++++L+IFDECHHA NHPY +IMK+FY K P +F
Sbjct: 134 MVMTPQVFLQALRNAFLILDMVSLMIFDECHHAT--GNHPYTRIMKEFYHKSEHK-PSVF 190
Query: 219 GMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSP--VVRVYQYGP 276
GMTASPV+ KG S+ + LENLLDAK+Y+V D E++E V S + R Y P
Sbjct: 191 GMTASPVIRKGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKP 250
Query: 277 VINDTSSSYVTCSEQLAEI--KREQYISALSRKLHD-HQSLRNTTKQLNR-LHDSMK--- 329
V + SE+L + K + I+ L K D ++ + TK+ R L S+
Sbjct: 251 V------CFEDLSEELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKIC 304
Query: 330 FCLENLGVCGALHASYILL--SGDETMRNELIEAEGNTIDDSLCRFASQAS--------E 379
+CL+++G+ A A+ I + ++ E+++A D + R ++ S E
Sbjct: 305 YCLDDVGLICASEATKICIERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEE 364
Query: 380 VFAAICRR--DGI----ASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNR 433
I +R GI S+ C+E K + S KL LI I +F +H +C++FV+R
Sbjct: 365 ALHLIDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDR 424
Query: 434 IVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKV 493
+TAR + +++ + LA + FL G + + +++ K L+ FRSG++NLL T V
Sbjct: 425 KITARVIDRMIKKIGHLAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDV 484
Query: 494 GEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKE 553
EEG+ + C VIRFDLP T S++QSRGRAR S+Y +++ GN ++ DLI +
Sbjct: 485 AEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRS 544
Query: 554 EDRMNREIMDRTS---SDAFTCSEE-RIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFF 609
E M + R S S F +EE Y V ++GA ++A +S+++RYC KLP D+ +
Sbjct: 545 ETSMVKIASSRESGNLSPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCY 604
Query: 610 NPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALN 669
+PKP F + G +C + LP +A + +VG +M AK+ CL A + LH+LGAL+
Sbjct: 605 SPKPTFEFTHHDDGYVCTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALD 664
Query: 670 DYL-LPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFY 728
D+L L ED P + S + + G R ELH +W + ++L Y
Sbjct: 665 DHLCLSVEDPV----PEIVSKNKGTGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSY 720
Query: 729 FMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIM------- 781
M F+ D A +IY EF L + + LP E L++DL+L + V T + G++
Sbjct: 721 KMNFVCDQAGQIYSEFVLLIDATLPDEVATLEIDLYL-HDKMVKTSVSSCGLLELDAQQM 779
Query: 782 -QAQQFQEMFLKVILDRSEFNSEFVP-------LGKDDYCESSSSTFYLLLPV--IFHKN 831
QA+ FQ + + + F VP L K+D ++++ YLLLP F N
Sbjct: 780 EQAKLFQGLLFNGLFGKL-FTRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPSFDSN 838
Query: 832 -SVDWKIIRRCLSSPVFGTPGGSVDRKSL-------PSHGPL-QLHNGWSSESDVENSLV 882
++W +I ++ S +++ L + G L L N + +++ +V
Sbjct: 839 VCINWSVIDAAATAVKLMRRIYSENKRELLGIFDSDQNVGDLIHLANKSCKANSLKDMVV 898
Query: 883 YATHKKWFYLVTNIV-----FEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAK 937
A H Y +I +G S K+ + ++ YGI L+HP QPLL K
Sbjct: 899 LAVHTGKIYTALDITELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLK 958
Query: 938 PLFRLRNLLHNRKLEDSESHELEEYFDD------------LPPELCQLKIIGFSKDIGSS 985
P NLL + K D E + +E + +PPEL L + +I S
Sbjct: 959 PSHNPHNLL-SSKFRD-EGNVVENMSNGTPVVNKTSNRVHMPPEL--LIPLDLPVEILRS 1014
Query: 986 LSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEIL 1045
L P++M+R+E+L +A +L+ + S + +S+ ++L+A+TT +C E FS+ERLE+L
Sbjct: 1015 FYLFPALMYRIESLTLASQLRSEIGYS---DSNISSFLILEAITTLRCSEDFSMERLELL 1071
Query: 1046 GDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQ 1105
GD+ LKYAV HLFL DEG+L+ R + + N+ L KL N+Q Y+RD FDP +
Sbjct: 1072 GDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRR 1131
Query: 1106 FFALGR--------RCPRICSKETERTIHSQYD-----GRAPDDLNAEVRCSKGHHWLHK 1152
+ A G+ CP + S+ IH D G+A C KGH W+
Sbjct: 1132 WLAPGQLSIRPSPCECP-VKSEVVTDDIHIIDDKAIVLGKA---------CDKGHRWMCS 1181
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISS--KSFLPLSASL 1210
KTIAD VEA++GA+ G +AA A LKW+GI E E + +S+ +++LP
Sbjct: 1182 KTIADCVEAIIGAYYAGGGLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVF 1241
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG--CYQRLEFLGDAVLDYLITSYLYSVY 1268
+M LE LG+ F +GLL++A HPS LG CY+RLEFLGDAVLD L+T YL++ +
Sbjct: 1242 EM--LEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSH 1299
Query: 1269 PKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTRE 1328
G+LTDLRS VNN+ FA VAV +F+ FL S +L + I YV+ + S +
Sbjct: 1300 KDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKV 1359
Query: 1329 --VKEG-PRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRE 1385
+ +G P+ PKVLGD+VES GAILLD+ +L+ VW I L PI+ NL+L P RE
Sbjct: 1360 ELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRE 1419
Query: 1386 LLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFS 1445
L+E C + + +G +A V + K+V + + RK+A AS L
Sbjct: 1420 LIEWCGKHGYFVGINCRDQGDTVVATLDV--QLKEVLLVRQGFSKKRKDAKAHASSLLLK 1477
Query: 1446 KLKAAGYV-----PKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQ 1500
L+ G + KT+ E S+ + +T + N + IS+P
Sbjct: 1478 DLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTPKPTKEKNAADSRNISDPL 1537
Query: 1501 GGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFD----------CCKEEGLSH 1550
+G P R LYELC W PT + C G S
Sbjct: 1538 ------LGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPSFSSVCSSPGGSS 1591
Query: 1551 LK----LFTFRVIVEIEAPE-KIIECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
K F F + + P +I G+ +A KK + + AA +L+ L+R G L
Sbjct: 1592 QKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYELQRRGTL 1646
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/1631 (32%), Positives = 806/1631 (49%), Gaps = 145/1631 (8%)
Query: 64 LELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVALVQQQ 121
+E+ + A+ N I L TG GKT +AV+L E A +R + + I +FLAPTV LV QQ
Sbjct: 44 VEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQ 103
Query: 122 AKVIEESIGFKVRTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
+VI E V G S+ + D W++E+ + E++VM PQILL L H F+ M +
Sbjct: 104 FEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFLTMSAV 163
Query: 181 ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSI 240
+LLIFDECH A +HPYA+IMK+FY + P +FGMTASPV KGAS N I
Sbjct: 164 SLLIFDECHRAC--GSHPYARIMKEFYFGSQWR-PDVFGMTASPVATKGASTLHNCEAHI 220
Query: 241 NSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLA---EIKR 297
+ LE LDAK+Y VED +LESF S P ++N +Y+ + L +I
Sbjct: 221 SQLELTLDAKIYIVEDRNELESF-SPPTT-------IVNKYYDAYMVDFDNLKSKLQIFS 272
Query: 298 EQYISAL-------SRKLHDHQSLRNTT-KQLNRLHDSMKFCLENLGVCGALHASYILLS 349
+++ S L S K D ++ T+ K L+R H + + L +LG + S ++
Sbjct: 273 DEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLG---PIITSEVVKI 329
Query: 350 GDETMRNELIEAEGNTIDD-SLCRFASQASEVFAAI------CRRDGIASDLSCIEVLKE 402
E+++ L ++E SLC S E + I + + S+ E+ K
Sbjct: 330 HIESVK-PLCDSEDCIFSKASLCLHMSYFKEALSLIEEILPQGYGELMKSESGSEELTKR 388
Query: 403 PFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVN 462
+ S K+ LI I +F + C++FV+RI+TA+A+ ++ + + + +L G +
Sbjct: 389 GYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYLTGGS 448
Query: 463 AGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
++S + L+ FR+G++NLL T V EEG+D+ C VIRFDLP TV S++QSR
Sbjct: 449 TSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSR 508
Query: 523 GRARMPQSEYAFLVDSGN-QRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIY--K 579
GRAR SE+ +++ GN Q++ + + N + ++ ++ S + +Y +
Sbjct: 509 GRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDLSIQGMYTYQ 568
Query: 580 VDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQI 639
V S+GA I+A V+L+ +YC KLP D +F PKP F + G C + LP NA I
Sbjct: 569 VQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAAFQSI 628
Query: 640 VGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPM---LFSSDSDSYEG 696
VG SS +K+ L+A + LH+LG LND+L+P +EPM ++D G
Sbjct: 629 VGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVP-----LTEEPMDTDFTTADEKCISG 683
Query: 697 EGS--RGELHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPG 754
G+ R ELH L +W + LN Y + F+ D Y F L ++ L
Sbjct: 684 PGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDD 743
Query: 755 EAEHLKVDLHLARGRSVMTKLVPSGIMQAQQ--------FQEMFLKVILDR-------SE 799
+ K+DL L + V T + P G +Q + FQE F I R S
Sbjct: 744 DVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSG 803
Query: 800 FNSEFVPLGKDDYCESSSSTFYLLLPV-----IFHKNSVDWKIIRRCLSSPVFGTPGGSV 854
+F+ K + ++ + YLLLP+ I S+ W+ I C +
Sbjct: 804 AQRDFI-FKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQG 862
Query: 855 DRKSLPSHGPLQLHNGWSSE-----------SDVENSLVYATHKKWFYLVTNIVFEKNGY 903
D +P + Q G E S +++S+V + H Y V +++ +
Sbjct: 863 DENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAE 922
Query: 904 SPY------KDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNR-KLEDSES 956
+ K S +S VD+ YGI ++HP+QPLL K NLL ++ K D +
Sbjct: 923 DSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYLDGST 982
Query: 957 -----HELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSA 1011
E E+ +PPEL L + + DI S LLPS++HRL++L++A +L+ +
Sbjct: 983 GKPLLMEKEQIHARVPPEL--LIHLDVTTDILKSFYLLPSVIHRLQSLMLASQLRREIGY 1040
Query: 1012 SFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELT 1071
+ + ++L+A+TT +C E FSLERLE+LGD+ LKY VG LFL + EG+L+
Sbjct: 1041 N----QHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLS 1096
Query: 1072 RRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALG----RRCPRICSKETERT-IH 1126
RS AV N+ L K +LQ Y+RD FDP ++ A G R P C ET H
Sbjct: 1097 DMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSH 1156
Query: 1127 SQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
+Y P + C +GH W+ KTI+D VEALVGA+ G AA ++W GI +
Sbjct: 1157 RRYIRDDPSFFVGK-PCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDI 1215
Query: 1187 EFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG--C 1244
+ + + + ++ LS D+ LE L + F +GLLL+A HPS LG C
Sbjct: 1216 KCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYC 1275
Query: 1245 YQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIF 1304
YQRLEFLGD+VLD L+T +LY+ + + PG+LTDLRS LV+N+ FA V + + L
Sbjct: 1276 YQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQH 1335
Query: 1305 DSNVLSETINNYV-DYMITPSSTREVKEGPRC--PKVLGDLVESSLGAILLDSGFNLNTV 1361
S +L E I YV + E + C PKVLGD++ES GA+ +D+ FN++ V
Sbjct: 1336 GSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMV 1395
Query: 1362 WKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDV 1421
W+I L P++ L L P RELLELC+ L KG + + E + +D+
Sbjct: 1396 WEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDE-- 1453
Query: 1422 FISACATNLSRKEAIRIASQQLFSKLKAAGY-----VPKTKSLE---SILKSSPKSEARL 1473
+ A + ++K A A+ ++ + LK G + K K L+ S L+ S
Sbjct: 1454 LLVAQGHDRNKKRAKAKAASRILADLKQQGLSIKQCLSKAKQLDIVTSDLQFDLTSSGTQ 1513
Query: 1474 IGYDETPINVVAADDNVFEKLKISEPQGGSSCDIGSPSLTTGGLQNRSARSRLYELCAAN 1533
+ Y +D N + L +G SS + + ++ RS L++LC
Sbjct: 1514 LSY---------SDLNDYHIL-----EGLSS--VKKEVVLPLKMEKGGPRSALFKLCKIL 1557
Query: 1534 CWKPPTFDCCKE--------EGLSHLKLFTFRVIVEIEAPE-KIIECIGEPQAKKKGAAE 1584
W P F+ ++ +G + +F + + P+ I GE + KK A +
Sbjct: 1558 QWPMPEFEFVEQRFRTPIVMDGATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQD 1617
Query: 1585 HAAEGMLWCLE 1595
A+ ML L+
Sbjct: 1618 SASLMMLHKLQ 1628
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1445 (32%), Positives = 757/1445 (52%), Gaps = 132/1445 (9%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P AR YQ+E +KA+++N IV+L TG GKT IA++L+ A+L RKP C+FL P
Sbjct: 20 PLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQ 79
Query: 115 VALVQQQAKVIEESIGFKVRTFCGG-SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
V LV QQA+ ++ KV + G W++E+D+YEVLVM P ILL L H
Sbjct: 80 VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 139
Query: 174 FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI----MKVPRIFGMTASPVVGKG 229
F+ + +I +LI DECHHA K HPYA IM++FY ++ VPRIFGMTAS V KG
Sbjct: 140 FLSLSMIKVLIVDECHHAGGK--HPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG 197
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDAEDLESFV--SSPVVRVYQYGPVINDTSSSYVT 287
+ + K I+ LE L+++KVY+ E+ L FV S+P + YQ+ + + +S V
Sbjct: 198 ENLDSYW-KKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVE 256
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYIL 347
E+L IK + L + ++ + K+L R+ ++ +CL++LG+ A A+ L
Sbjct: 257 KLERLT-IKHRLSLGTLDL---NSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSL 312
Query: 348 LSGDETMRNELIEAEGNTIDDSLCR-FASQASEVFAAICRRDGIASDLSCIEVLKEP-FF 405
+ + + E N +L + F S AS+ F A + G+ ++ I E
Sbjct: 313 ---SASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQ-GLNWSVANINGNAEAGLL 368
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQN-LKFLASWRCHFLVGVNAG 464
+ K + LI L + ++++CI+FV+R++TA L +L L +W+ ++ G N+G
Sbjct: 369 TLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSG 428
Query: 465 LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
L++ +R I+E FR G +N++VAT + EEGLD+Q+C LVIRFD + SFIQSRGR
Sbjct: 429 LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 488
Query: 525 ARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTC------SEERIY 578
ARM S+Y +V+SG+ + + RM E +D + C S+E ++
Sbjct: 489 ARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS---LVPCPPLPDDSDEPLF 545
Query: 579 KVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQ 638
+V+S+GA ++ VSL++ YCS+LP DE+F P P+F D G C + LP + P+ +
Sbjct: 546 RVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS--CTLYLPKSCPVKE 603
Query: 639 IVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQ----EDNATEDEPMLFSSDSDSY 694
+ +++ + K+ CLKA LHK+GAL+D+L+P E + + E + ++++ Y
Sbjct: 604 V--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQPCY 661
Query: 695 EGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPD-PADRIYREFGLFVKSLLP 753
P ++ Q +Q +FY ++ P+ P + + L + +L
Sbjct: 662 ------------FPPELVSQ--FSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLE 707
Query: 754 GEAEHLKVDLHLARGRSVMT-------KLVPSGIMQAQQFQEMFLKVILDRSEFNSEFVP 806
+ + L RG +T L ++ ++FQ +V+LD S N +
Sbjct: 708 DDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVEN--LME 765
Query: 807 LGKDDYCESSSSTFYLLLPVIF-HKNS-VDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGP 864
+ + YLL+P H+ S +DW++IR +L SH
Sbjct: 766 ALNGLHLRDGVALDYLLVPSTHSHETSLIDWEVIRSV----------------NLTSHEV 809
Query: 865 LQLHNGWSSESD---------------VENSLVYATHKKWFYLVTNIVFEKNGYSPY--K 907
L+ H S+ V+N+LVY H + Y ++ NG S +
Sbjct: 810 LEKHENCSTNGASRILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKR 869
Query: 908 DSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLP 967
+S +++++ +GI L +PLL + +F L + LH K + + H+ E F +LP
Sbjct: 870 NSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDRE--FVELP 927
Query: 968 PELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKA 1027
PELC + + S D+ S + +PS+M R+E+LL+A LK S P+ + +L+A
Sbjct: 928 PELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLK----KSIPK-VNIPTIKVLEA 982
Query: 1028 LTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLA 1087
+TT+KC+++F LE LE LGD+FLKYAV + LF T EG L+ ++ ++N L +
Sbjct: 983 ITTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFG 1042
Query: 1088 ARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGH 1147
+ LQ +IRD+ F+P + G+ +S + P+ N V +
Sbjct: 1043 CQQKLQGFIRDECFEPKGWMVPGQ----------SSAAYSLVNDTLPESRNIYVASRRN- 1091
Query: 1148 HWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLS 1207
L +K++ADVVE+L+GA++ + G AA F+ W+GI+V+F ++ I S +
Sbjct: 1092 --LKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTK-----IQRDSPIQAE 1144
Query: 1208 ASLDMATLEILLGHQFLHRGLLLQAFVHPSFN--RLGGCYQRLEFLGDAVLDYLITSYLY 1265
+++ +E LL + F + LL++A H S+ + CYQRLEFLGD+VLDYLIT +LY
Sbjct: 1145 KLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLY 1204
Query: 1266 SVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPS- 1324
YP L PG LTD+RS VNN+ +A VAV + +K +++ S+ L + I+ V S
Sbjct: 1205 DKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSL 1264
Query: 1325 -STREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPI 1383
ST + PKVLGD++ES GAI +DSG+N V+ + L ++ ++L+P+
Sbjct: 1265 QSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPV 1324
Query: 1384 RELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQL 1443
REL ELC + +L K F E K K++ + A +K A ++A +++
Sbjct: 1325 RELTELCQKWQFELS--KAKDFDSFTVEVKA----KEMSFAHTAKASDKKMAKKLAYKEV 1378
Query: 1444 FSKLK 1448
+ LK
Sbjct: 1379 LNLLK 1383
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1453 (32%), Positives = 731/1453 (50%), Gaps = 140/1453 (9%)
Query: 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSICIFLAPT 114
K +AR YQLE ++A+ N + +L TG GKT IAV+L+ AH +R+P + +FL PT
Sbjct: 31 KTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPT 90
Query: 115 VALVQQQAKVIEESIGFKVRTFCGG-SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
V LV QQA+V+E+ V+ FCG W +++ EVLVM PQILL L H
Sbjct: 91 VVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHS 150
Query: 174 FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK-----VPRIFGMTASPVVGK 228
F +++ IALLIFDECHHA + N PYA I K+FY P + +PRIFGM+AS + K
Sbjct: 151 FFRLQDIALLIFDECHHA--RGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSK 208
Query: 229 GASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQY--GPVINDTSSSYV 286
+ N K I+ +ENL+++KVY+V+ L ++ ++ + + ++ ++ +
Sbjct: 209 DLNPH-NYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNISSELHANIL 267
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYI 346
+C +L +++I AL RKLH SL N +++++LH + +CL NLGV A A+ +
Sbjct: 268 SCLNRL----NKKHIEALDRKLHG-SSLENAKQRISKLHHTFVYCLYNLGVWLAAKAAEV 322
Query: 347 LLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCI---EVLKEP 403
++ + G T+D ++ F SE + +LSC + E
Sbjct: 323 -----QSYEENSLSFWGETLDKNVEGFIRNYSE---------EVHRELSCFLKNGHIGEK 368
Query: 404 F--------FSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRC 455
F + K+ LI L +R Q ++CIVFV R++T+ L ++L ++ ++ W
Sbjct: 369 FPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNV 428
Query: 456 HFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515
+ G GL S SR I+E FR G++++++AT++ EEGLD+ +C LVIRFD TV
Sbjct: 429 KHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATV 488
Query: 516 ASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDA----FT 571
SFIQSRGRARM S+Y LV G+ + F M E + S T
Sbjct: 489 CSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPLENT 548
Query: 572 CSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILP 631
E+ Y+V+S+ A ++ V L+H +CSKLP DE+FNP P+F D GT C + LP
Sbjct: 549 LCEDTYYRVESTRAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRF-DIDKASGT-CTLHLP 606
Query: 632 ANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSD- 690
++P+ + + S+ K+ CLKA ++LH +GAL D LLP+ D ++EP + +
Sbjct: 607 KSSPVQTVNVEGEGSI--LKETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENK 664
Query: 691 --SDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYF-----MQFIPDPADRIYRE 743
SY P +W RL Y+ ++ P A
Sbjct: 665 IEQPSY-------------FPEEFVDNWRSFS---RLGIYYCYKISLEGCPKTASPTDIL 708
Query: 744 FGL-------FVKS--LLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQFQEMFLKVI 794
L F S LPG ++ V + + L ++ A++FQ L +
Sbjct: 709 LALKCDLGSDFTSSSFKLPGGQDNASVTMKYVG----IIHLNQEQVIIARRFQTTILSFL 764
Query: 795 L--DRSE-------FNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSP 845
+ D E F+ VP+G YLLLP++ +DW ++ SSP
Sbjct: 765 IGDDHLEVSNGIKYFHEMQVPIG----------VVYLLLPLV--SGRIDWCSMKFS-SSP 811
Query: 846 VFGTPGGSVDR-KSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIV-FEKNGY 903
++ + S LQ +G ++NS+V H FY+++ + + N
Sbjct: 812 IYEANNKHMTHCHSCKDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSC 871
Query: 904 SPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYF 963
P D ++ D+ + +G+ L QPLL ++RN LHN E + Y
Sbjct: 872 LPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHN-CYSKKEKEPGDRYS 930
Query: 964 DDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEM 1023
+LPPELC++ + S + S +PSIM R++ +L++++LK L + + +V
Sbjct: 931 VELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTVQQ-FDVPVLK 989
Query: 1024 LLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNL 1083
+L+ALTT+KCQE FS E LE LGD+FLKY RHLF + EG LT+ + N ++N+ L
Sbjct: 990 ILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1049
Query: 1084 LKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRC 1143
+LA +NL YI + F+P R C ER + + AP+ + ++ +
Sbjct: 1050 CQLACSSNLVGYIHAEEFNP-------RDWIIPCLDYDERD-NKKISFLAPNGMYSQRKM 1101
Query: 1144 SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSF 1203
S + K IAD VEAL+GA++ +G KAA +K +G+ +EF T I + K
Sbjct: 1102 S-----IKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFH----TEIPVERKIS 1152
Query: 1204 LPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG--GCYQRLEFLGDAVLDYLIT 1261
+ +++ +LE +LG++F LLL+A H S+ G CYQRLEFLGDA+LD+L T
Sbjct: 1153 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1212
Query: 1262 SYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD--- 1318
Y YS YP P LTDLRS VNN +A+ AV K ++ S+ L ++ Y++
Sbjct: 1213 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 1272
Query: 1319 -YMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSN 1377
PS E G PKVLGD++ES GAI LDS + VW+ M L+P+
Sbjct: 1273 QSFTGPSYGWEAGIG--LPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPET 1330
Query: 1378 LQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIR 1437
++ +P++ L E C+ + + G A+V K + SA + + A +
Sbjct: 1331 IEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVIARV--KAGETTYSATKSGPCKLVAKK 1388
Query: 1438 IASQQLFSKLKAA 1450
+AS+ + L A
Sbjct: 1389 LASKAVLKDLIAG 1401
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust.
Identities = 520/1732 (30%), Positives = 777/1732 (44%), Gaps = 268/1732 (15%)
Query: 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYEL-AHLIRKPQKSICIFLAPTVAL 117
AR+YQL++ ++A +N I +L TG GKT IA+LLI + L+ + +K + +FL P V L
Sbjct: 249 ARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPL 308
Query: 118 VQQQAKVIEESIGFKVRTFCG--GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQA+VI F+V +CG G S W++E + +VLVM QILL L H I
Sbjct: 309 VYQQAEVIRNQTCFQVGHYCGEMGQDFWDSR-RWQREFESKQVLVMTAQILLNILRHSII 367
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM-KVPRIFGMTASPVVGKGASAQA 234
+ME I LLI DECHHA K HPY+ +M +FY K P IFGMTASPV KG S+Q
Sbjct: 368 RMETIDLLILDECHHAVKK--HPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQV 425
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPV-----INDTSSSYVTCS 289
+ I +LE LD+ V +++D ++LE V P V +Y +++T +
Sbjct: 426 DCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAV 485
Query: 290 EQLAEIK----REQYISALS-------RKLHDHQSLRNTTKQLNRLHD--SMKFCLENLG 336
E+ A+ + Q++ A R+++ + N +H ++ + L LG
Sbjct: 486 EEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELG 545
Query: 337 VCGALHASYILLSG---DET--------------------MRNELIEA------------ 361
A LS DE ++ EL+E
Sbjct: 546 QWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGK 605
Query: 362 -----------EGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLL 410
EG DD + EV A + + + K+
Sbjct: 606 PENGNAHDEMEEGELPDDPVVSGGEHVDEVIGA---------------AVADGKVTPKVQ 650
Query: 411 RLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSR 470
LI +L ++ + IVFV R+V A L + L L+ RC ++G N + M
Sbjct: 651 SLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNS-QEMKS 709
Query: 471 NAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQS 530
+ M+ + KFR G + LLVAT V EEGLDI+ C +V+RFDL +TV ++IQSRGRAR P S
Sbjct: 710 SQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGS 769
Query: 531 EYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRT------------SSDAFTCSEERIY 578
+Y +V+ GN ++N E+ + +E ++RT S DA + +Y
Sbjct: 770 DYILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGT---VY 826
Query: 579 KVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTI---CHIILPAN 633
KV+++GA +S V L+H YCS+LP D + +P+F + GG C + LP N
Sbjct: 827 KVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCN 886
Query: 634 APIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDS 693
AP + G SSM A++ CL A + LH++GA D LLP + + + E + +
Sbjct: 887 APFEILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEP 946
Query: 694 YEGEGSRGELHEMLVPAVLRQSWTKSQYPV-------RLNFYFMQFI-----PDPADRIY 741
G E + V VL+ W S V L Y ++ + DP
Sbjct: 947 VPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV 1006
Query: 742 REFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQA--------QQFQEMFLKV 793
EF + + L E + +DL++AR L G + ++F + +
Sbjct: 1007 SEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSI 1066
Query: 794 ILDRSEFNSE----------FVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIR---- 839
+LD S FVP+ + E + L+ I + D + R
Sbjct: 1067 VLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPD 1126
Query: 840 -------RCL---------------------SSPVFGTPGG----SVDRKS--LP----- 860
R L S P +G G V R S LP
Sbjct: 1127 VYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAF 1186
Query: 861 --------SHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDS- 909
S G L + +G D+ +V A H + V +I ++ + + P K+
Sbjct: 1187 EKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGY 1246
Query: 910 ----DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHEL--EEYF 963
+ +++ D+ YG+ L +QPL++ + + +NLL R + ES + + Y+
Sbjct: 1247 LGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYY 1306
Query: 964 DDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEM 1023
LPPELC + + S G+ LPSIM R+E++L+A++LK+L+S P
Sbjct: 1307 VFLPPELCVVHPLSGSLIRGAQR--LPSIMRRVESMLLAVQLKNLISYPIP------TSK 1358
Query: 1024 LLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNL 1083
+L+ALT CQE F ER E+LGDA+LK+ V R LFL + EG+LTR R V+N L
Sbjct: 1359 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVL 1418
Query: 1084 LKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYD------GRAPDDL 1137
+ A LQ YI+ F P ++ A G P + ++T+ S +D D+
Sbjct: 1419 YQFALVKGLQSYIQADRFAPSRWSAPG--VPPVFDEDTKDGGSSFFDEEQKPVSEENSDV 1476
Query: 1138 NAEVRCSKG--------HHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFE 1189
+ G + L KT+ADVVEAL+G + + G AA +KWIGI VE +
Sbjct: 1477 FEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDD 1536
Query: 1190 ASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG-GCYQRL 1248
+V + + S+D LE L ++F +GLL++A H S G CYQRL
Sbjct: 1537 PDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRL 1596
Query: 1249 EFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNV 1308
EF+GDAVLD+LIT +L+ Y L PG+LTDLR+ VNN+ FA VAV + +L S+
Sbjct: 1597 EFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSA 1656
Query: 1309 LSETINNYVDYMITPSSTREVKE----GPRCPKVLGDLVESSLGAILLDSGFNLNTVWKI 1364
L + I +V + T SS + PKVLGD+VES GAI LDSG + WK+
Sbjct: 1657 LEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKV 1716
Query: 1365 MLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFIS 1424
L P++ L ++P+REL E C L++ + + G E VFI
Sbjct: 1717 FQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVE---------VFID 1767
Query: 1425 ACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVV 1484
+++ ++A + AA E + E IN
Sbjct: 1768 GVQVGVAQNPQKKMAQKLAARNALAA-----------------LKEKEIAESKEKHINNG 1810
Query: 1485 AADDNVFEKLKISEPQGGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFDCCK 1544
A ++ E + G+ + P R L ++C W P++ C K
Sbjct: 1811 NAGEDQ------GENENGNKKNGHQP----------FTRQTLNDICLRKNWPMPSYRCVK 1854
Query: 1545 EEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLER 1596
E G +H K FTF V V ECIGEP K A + AA +L L +
Sbjct: 1855 EGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNK 1906
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust.
Identities = 448/1396 (32%), Positives = 691/1396 (49%), Gaps = 158/1396 (11%)
Query: 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSICIFLAPT 114
K +AR YQLE ++A+ N + +L TG GKT IAV+L+ AH +R+P + +FL PT
Sbjct: 31 KTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPT 90
Query: 115 VALVQQQAKVIEESIGFKVRTFCGG-SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
V LV QQA+V+E+ V+ FCG W +++ EVLVM PQILL L H
Sbjct: 91 VVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHS 150
Query: 174 FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK-----VPRIFGMTASPVVGK 228
F +++ IALLIFDECHHA + N PYA I K+FY P + +PRIFGM+AS + K
Sbjct: 151 FFRLQDIALLIFDECHHA--RGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSK 208
Query: 229 GASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQY--GPVINDTSSSYV 286
+ Q N K I+ +ENL+++KVY+V+ L ++ ++ + + ++ ++ +
Sbjct: 209 DLN-QHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNISSELHANIL 267
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYI 346
+C +L + ++I AL RKLH SL N +++++LH + +CL NLGV A A+ +
Sbjct: 268 SCLNRLTK----KHIEALDRKLHG-SSLENAKQRISKLHRTFVYCLYNLGVWLAAKAAEV 322
Query: 347 LLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCI---EVLKEP 403
++ + G T+D ++ F SE + +LSC + E
Sbjct: 323 -----QSYEENSLSFWGETLDKNVEGFIRNYSE---------EVHRELSCFLKNGHIGEK 368
Query: 404 F--------FSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRC 455
F + K+ LI L +R Q ++CIVFV R++T+ L +L ++ ++ W
Sbjct: 369 FPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSGWNV 428
Query: 456 HFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515
+ G GL S SR I+E FR G++++++AT++ EEGLD+ +C LVIRFD TV
Sbjct: 429 KHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATV 488
Query: 516 ASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDA----FT 571
SFIQSRGRARM S+Y LV G+ K F M E + S T
Sbjct: 489 CSFIQSRGRARMENSDYLLLVGRGDVEAHTNAKKFLASGQIMREESLRLGSISCQPLENT 548
Query: 572 CSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILP 631
E+ Y+V+S+ A + D GT C + LP
Sbjct: 549 LCEDTYYRVESTPA------------------------------FDIDKASGT-CTLHLP 577
Query: 632 ANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDS 691
++P+ + + S+ K+ CLKA ++LH +GAL D LLP+ D ++EP + +
Sbjct: 578 KSSPVQTVNVEGEGSI--LKETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENK 635
Query: 692 DSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYF-----MQFIPDPADRIYREFGL 746
P +W RL Y+ ++ P A L
Sbjct: 636 IE----------QPSYFPEEFVDNWRSFS---RLGIYYCYKISLEGCPKTASPTDILLAL 682
Query: 747 -------FVKS--LLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQFQEMFLKVIL-- 795
F S LPG ++ V + + L ++ A++FQ L ++
Sbjct: 683 KCDLGSDFTSSSFKLPGGQDNASVTMKYVG----IIHLNQEQVIIARRFQTTILSFLIGD 738
Query: 796 DRSE-------FNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFG 848
D E F+ VP+G YLLLP++ +DW ++ SSP++
Sbjct: 739 DHLEVSNGIKYFHEMQVPIG----------VVYLLLPLV--SGRIDWCSMKFS-SSPIYE 785
Query: 849 TPGGSVDR-KSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIV-FEKNGYSPY 906
+ S LQ +G ++NS+V H FY+++ + + N P
Sbjct: 786 ANNKHMTHCHSCRDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSRLPQ 845
Query: 907 KDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDL 966
D ++ D+ + +G+ L QPLL ++RN LHN + E + Y +L
Sbjct: 846 HDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNYYYK-KEKEPGDRYSVEL 904
Query: 967 PPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLK 1026
PPELC++ + S + S +PSIM R++ +L++++LK L + + +V +L+
Sbjct: 905 PPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTVQQ-FDVPVLKILE 963
Query: 1027 ALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKL 1086
ALTT+KCQE FS E LE LGD+FLKY RHLF + EG LT+ + N ++N+ L +L
Sbjct: 964 ALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQL 1023
Query: 1087 AARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKG 1146
A +NL YI + F+P + C ER + + AP+ + ++ + S
Sbjct: 1024 ACSSNLVGYIHAEEFNPRDWII-------PCLDYDERG-NKKISFLAPNGMYSQRKMS-- 1073
Query: 1147 HHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPL 1206
+ K IAD VEAL+GA++ +G KAA +K +G+ +EF T I + K +
Sbjct: 1074 ---IKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFH----TEIPVERKISMKA 1126
Query: 1207 SASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG--GCYQRLEFLGDAVLDYLITSYL 1264
+D+ +LE +LG++F LLL+A H S+ G CYQRLEFLGDA+LD+L T Y
Sbjct: 1127 EEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYY 1186
Query: 1265 YSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT-P 1323
YS YP P LTDLRS VNN +A+ AV K ++ S+ L ++ Y+ T P
Sbjct: 1187 YSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGP 1246
Query: 1324 SSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPI 1383
S E G PKVLGD++ES GAI LDS + VW+ M L+P+ ++ +P+
Sbjct: 1247 SYGWEAGIG--LPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPV 1304
Query: 1384 RELLELCNSYDLDLQF 1399
+ L E C+ + +
Sbjct: 1305 KGLQEFCDRRSFKITY 1320
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 462/1625 (28%), Positives = 753/1625 (46%), Gaps = 189/1625 (11%)
Query: 62 YQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQ 121
Y+L++ + A NII LGTG K+ I LI + K + IFLAPTV LV+QQ
Sbjct: 47 YELKVYEVAKNRNIIAVLGTGIDKSEITKRLIKAMGS--SDTDKRLIIFLAPTVNLVKQQ 104
Query: 122 AKVIEESIGFKVRTFCG--GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMEL 179
I + KV + G G + S W++E +++VLVM PQILL L F+K+E+
Sbjct: 105 CCEIRALVNLKVEEYFGAKGVDKWTSQ-RWDEEFSKHDVLVMTPQILLDVLRSAFLKLEM 163
Query: 180 IALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKG-ASAQANLPK 238
+ LLI DECHH NHPYAK+MK+FY K P+IFG+TAS V+ KG S+ +N
Sbjct: 164 VCLLIIDECHH--TTGNHPYAKLMKEFYHESTSK-PKIFGLTASAVIRKGIVSSPSNYAA 220
Query: 239 SINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKRE 298
++ LE L+D+K+++ E+ E +E F ++ + GP++ + S S CS +L E
Sbjct: 221 QVSELERLMDSKIFNPEEREGVEKFATT-----VKEGPILYNPSPS---CSLELKEKLET 272
Query: 299 QYI--SALSRKLHD---------HQSLRNTTKQLNRLHDSMKFCLENLG-VCGALHASYI 346
++ A R+L + K+L+ + + CL+NLG +C L A
Sbjct: 273 SHLKFDASLRRLQELGKDSFLNMDNKFETYQKRLSIDYREILHCLDNLGLICAHLAAEVC 332
Query: 347 LLSGDETMRNELIEAEGNTIDDSLCR--FASQASEVFAAICRRDGIASDL--SCIEVLKE 402
L E + + E+E +C+ S + + + D DL + + +
Sbjct: 333 L----EKISDTKEESETYKECSMVCKEFLEDILSTIGVYLPQDDKSLVDLQQNHLSAVIS 388
Query: 403 PFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVN 462
S KL L +L +FR + +C++ V RI+TA+ + ++ LA +L N
Sbjct: 389 GHVSPKLKELFHLLDSFRGDKQKQCLILVERIITAKVIERFVKKEASLAYLNVLYLTENN 448
Query: 463 AGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
++ I + F+ G++NLL T V EEG + C ++ FDLP+T+ S+ QS+
Sbjct: 449 PSTNVSAQKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSYSQSQ 508
Query: 523 GRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDS 582
A+ S+ ++ GN ++ D + D M RE++ + + S
Sbjct: 509 KHAKQSNSKSIMFLERGNPKQRDHL------HDLMRREVL---------IQDPEAPNLKS 553
Query: 583 SGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILP-ANAPIHQIVG 641
+ G+GV I +++P +N + +
Sbjct: 554 CPPPVKNGHGVK-----------------------------EIGSMVIPDSNITVSEEAA 584
Query: 642 TPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRG 701
+ Q+ + ++ L + L L++ LL + N E S S S G R
Sbjct: 585 STQTMSDPPSRNEQLPPCKKLR----LDNNLL--QSNGKEKVASSKSKSSSSAAGSKKRK 638
Query: 702 ELHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKV 761
ELH L +W ++ Y F + + +Y F L ++S L + +++
Sbjct: 639 ELHGTTCANALSGTWGENIDGATFQAYKFDFCCNISGEVYSSFSLLLESTLAEDVGKVEM 698
Query: 762 DLHLARGRSVMTKLVPSG--------IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYC 813
DL+L R + V + P G +++A+ FQ+ F + + S+ ++
Sbjct: 699 DLYLVR-KLVKASVSPCGQIRLSQEELVKAKYFQQFFFNGMFGKLFVGSKSQGTKREFLL 757
Query: 814 ESSSSTF------YLLLPV----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKS----- 858
++ +S+ +LLLPV + ++DW I C S F +D +
Sbjct: 758 QTDTSSLWHPAFMFLLLPVETNDLASSATIDWSAINSCASIVEFLKKNSLLDLRDSDGNQ 817
Query: 859 --------------LPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS 904
+ + N S ++ +E +V A H Y + V + + S
Sbjct: 818 CNTSSGQEVLLDDKMEETNLIHFANASSDKNSLEELVVIAIHTGRIYSIVEAVSDSSAMS 877
Query: 905 PYKDSDSS---SHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELE- 960
P++ SS ++ ++ YGI L HP QPL++ K NLL + E E +
Sbjct: 878 PFEVDASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVDFNEEMVVKTEPKA 937
Query: 961 --------EYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSAS 1012
LPPEL L I + + S+ LLPS+MHRLE+L++A +L+ + S
Sbjct: 938 GNVRKRKPNIHAHLPPEL--LARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCS 995
Query: 1013 FPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTR 1072
+ +S+ +L+A+TT C E FS+ERLE+LGD+ LKY HLFL + DEG+L+R
Sbjct: 996 I-DNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1054
Query: 1073 RRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGR----RCPRICSKETERTIHSQ 1128
+R + ++NSNL +L LQ YIR+ F+P ++ A G+ P C +T
Sbjct: 1055 QRQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAPGQFSLFPVPCKCGIDTREVPLDP 1114
Query: 1129 YDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEF 1188
+ C GH W+ K+++D EAL+GA+ G A+ +KW+GI V+F
Sbjct: 1115 KFFTENMTIKIGKSCDMGHRWVVSKSVSDCAEALIGAYYVSGGLSASLHMMKWLGIDVDF 1174
Query: 1189 EASQVTNIC--ISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQ 1246
+ + V +S + ++P L LE + H+F + LL +A H S R Y+
Sbjct: 1175 DPNLVVEAINRVSLRCYIPKEDEL--IELERKIQHEFSAKFLLKEAITHSSL-RESYSYE 1231
Query: 1247 RLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDS 1306
RLEFLGD+VLD+LIT +L++ Y + PG++TDLRS VNN+ FA VAV + + L +
Sbjct: 1232 RLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCA 1291
Query: 1307 NVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIML 1366
VL IN+Y+ P T + PK LGD+VES GA+L+D+ +L+ VW++
Sbjct: 1292 TVLETQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFE 1351
Query: 1367 SFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISAC 1426
L P++ LQL P REL ELC+S + G K A+A + + DV ++
Sbjct: 1352 PLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGVK--AQATIQLQLDDVLLTGD 1409
Query: 1427 ATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINV-VA 1485
+ + K A+ A+ L ++L+ KT +G +++ ++V +A
Sbjct: 1410 GSEQTNKLALGKAASHLLTQLEKRNISRKTS----------------LGDNQSSMDVNLA 1453
Query: 1486 ADDNVFEKL--KISEPQGGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFDCC 1543
+ + E L + +E Q IG ++ GG R L+E C + W PTFD
Sbjct: 1454 CNHSDRETLTSETTEIQSIVIPFIGPINMKKGG-----PRGTLHEFCKKHLWPMPTFDTS 1508
Query: 1544 KE------------EGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGML 1591
+E E + FT + + I E ++ GE + KK + + A +L
Sbjct: 1509 EEKSRTPFEFIDGGEKRTSFSSFTSTITLRIPNREAVMYA-GEARPDKKSSFDSAVVELL 1567
Query: 1592 WCLER 1596
+ LER
Sbjct: 1568 YELER 1572
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of repeat-associated small interfering RNAs (ra-siRNAs, derived from heterochromatin and DNA repeats such as transposons) by cleaving small dsRNAs into 24 nucleotide ra-siRNAs. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cabbage leaf curl virus (CaLCuV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL3 function in RNA silencing. Acts redundantly with DICER-LIKE 1 (DCL1) to promote flowering via repression of FLOWERING LOCUS C (FLC). Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 394/1317 (29%), Positives = 597/1317 (45%), Gaps = 203/1317 (15%)
Query: 412 LIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRN 471
LI IL ++ + + I+FV R+VTA L +L L L+ RC L+G N + M
Sbjct: 629 LIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNN-QEMRAC 687
Query: 472 AMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSE 531
M+ + KFR G + LLVAT V EEGLDI+ C +VIRFDL +TV ++IQSRGRAR P S+
Sbjct: 688 QMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 747
Query: 532 YAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFT---------CSEERIYKVDS 582
Y +++ GN ++N E+ + +E M+RT S +Y+V+S
Sbjct: 748 YILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVES 807
Query: 583 SGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTI---CHIILPANAPIH 637
+GA +S V L+H YCS+LP D + P+F ++ GG++ C + LP NAP
Sbjct: 808 TGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFE 867
Query: 638 QIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGE 697
++ G SS+ A++ CL A + LH++GA D LLP + + E E + + + G
Sbjct: 868 KLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLP-DRGSGEGEKTEQNDEGEPLPGT 926
Query: 698 GSRGELHEMLVPAVLRQSW--------TKSQYPVRLNFYFMQFI-----PDPADRIYREF 744
E + V +LR W SQ+ ++L Y + + DP F
Sbjct: 927 ARHREFYPEGVADILRGEWILSGRDGYQNSQF-IKLYMYSVNCVNVGTSKDPFVTQLSNF 985
Query: 745 GLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQFQEMFLK--------VILD 796
+ + L E +DL +AR LV G ++ + Q + LK ++LD
Sbjct: 986 AIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLD 1045
Query: 797 RSEFNSE----------FVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIR------- 839
S FVP+G + + + L+ I + ++ + + R
Sbjct: 1046 VDVDPSTTPWDPAKAYLFVPVGAEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYL 1105
Query: 840 ----RCL---------------------SSPVFGTPGG--------------SVDRKSLP 860
R L + P +G G + DR
Sbjct: 1106 GTNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFS 1165
Query: 861 SH---GPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDS-----D 910
+ G L + + + D+ +V A H + V I + N + P K+ +
Sbjct: 1166 DYQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLE 1225
Query: 911 SSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELE-------EYF 963
SS+ D+ YG+ L + KQPL+RA+ + +NLL R E S++ E + Y+
Sbjct: 1226 YSSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPR-FEHSDAREGDFSENLDKTYY 1284
Query: 964 DDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEM 1023
LPPELC + + S G+ LPSIM R+E++L+A++LK ++ P A
Sbjct: 1285 VYLPPELCLVHPLPGSLVRGAQR--LPSIMRRVESMLLAVQLKDIIDYPVP------ATK 1336
Query: 1024 LLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNL 1083
+L+ALT CQE ER E+LGDA+LK+ V R LFL + EG+LTR R V+N L
Sbjct: 1337 ILEALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVL 1396
Query: 1084 LKLAARNNLQVYIRDQPFDPCQFFALG----------RRCPRICSKET-----ERTIHSQ 1128
+ A LQ YI+ F P ++ A G P I +E+ ++ +
Sbjct: 1397 YQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDD 1456
Query: 1129 YDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEF 1188
Y +D E S + L KT+ADVVEAL+G + G AA +KWIGI E
Sbjct: 1457 YADNMQEDGEIEGDSS-CYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAEL 1515
Query: 1189 EASQVTNICISSKSF-LPLS--ASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLG-GC 1244
+ ++ K + +P S S++ TL+ +LG +F ++GLL++A H S G C
Sbjct: 1516 DPEEIP----PPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSC 1571
Query: 1245 YQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIF 1304
YQRLEF+GDAVLD+LIT +L+ Y L PG+LTDLR+ VNN+ FA VAV + L
Sbjct: 1572 YQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRH 1631
Query: 1305 DSNVLSETINNYV----DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNT 1360
S+ L I +V + ++ P + PKVLGD+VES GAI LDSG++ +
Sbjct: 1632 GSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSV 1691
Query: 1361 VWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKD 1420
VWK+ L P++ L ++P+REL E C L++ + + G E
Sbjct: 1692 VWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVE--------- 1742
Query: 1421 VFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETP 1480
VF+ +++ ++A KL A + K E+ K
Sbjct: 1743 VFVDGVQIGVAQNPQKKMAQ-----KLAARNALVVLKEKETATKK--------------- 1782
Query: 1481 INVVAADDNVFEKLKISEPQGGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTF 1540
E + E + G+ R L ++C W P +
Sbjct: 1783 -----------EDERDGEKKNGAQM---------------FTRQTLNDICLRRQWPMPQY 1816
Query: 1541 DCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLERE 1597
C E G +H K F + V V ECIGEP K A + AA +L L R+
Sbjct: 1817 RCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNRD 1873
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1601 | ||||||
| 359484756 | 1622 | PREDICTED: dicer-like protein 4 [Vitis v | 0.976 | 0.963 | 0.660 | 0.0 | |
| 296084589 | 1623 | unnamed protein product [Vitis vinifera] | 0.976 | 0.963 | 0.660 | 0.0 | |
| 255565079 | 1633 | Ribonuclease III, putative [Ricinus comm | 0.984 | 0.965 | 0.652 | 0.0 | |
| 356565129 | 1636 | PREDICTED: dicer-like protein 4-like [Gl | 0.988 | 0.966 | 0.627 | 0.0 | |
| 356546104 | 1636 | PREDICTED: dicer-like protein 4-like [Gl | 0.985 | 0.964 | 0.626 | 0.0 | |
| 224088236 | 1588 | dicer-like protein [Populus trichocarpa] | 0.957 | 0.965 | 0.619 | 0.0 | |
| 397529815 | 1620 | dicer-like protein 4 [Solanum lycopersic | 0.973 | 0.962 | 0.600 | 0.0 | |
| 449457995 | 1657 | PREDICTED: dicer-like protein 4-like [Cu | 0.990 | 0.957 | 0.603 | 0.0 | |
| 379987682 | 1622 | dicer-like 4 protein [Nicotiana attenuat | 0.977 | 0.964 | 0.602 | 0.0 | |
| 297812215 | 1693 | predicted protein [Arabidopsis lyrata su | 0.964 | 0.911 | 0.568 | 0.0 |
| >gi|359484756|ref|XP_002264486.2| PREDICTED: dicer-like protein 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2100 bits (5441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1086/1644 (66%), Positives = 1283/1644 (78%), Gaps = 81/1644 (4%)
Query: 9 EGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKT----DKDPKQIARKYQL 64
+G P GG I A A+ G A+ G+ KDP+ IAR YQL
Sbjct: 3 KGQAPGGGDPGITVA----------ALPITGLAADEGEGSSSGASSSKKDPRTIARGYQL 52
Query: 65 ELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV 124
ELCKKA+EENIIVY+GTGCGKTHIAVLLI+ L HLIRKPQK+IC+FLAPTVALVQQQA+V
Sbjct: 53 ELCKKALEENIIVYMGTGCGKTHIAVLLIHALGHLIRKPQKNICVFLAPTVALVQQQARV 112
Query: 125 IEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLI 184
IEESI FKV T+CG S+RL++H DWEKE +QYEV VM PQILL LYH FI+MELIALLI
Sbjct: 113 IEESIDFKVGTYCGNSRRLRTHHDWEKEFEQYEVFVMTPQILLRGLYHCFIRMELIALLI 172
Query: 185 FDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLE 244
FDECHHAQV+SNHPYA+IMK FYK ++PRIFGMTASPVVGKGAS QANLPK INSLE
Sbjct: 173 FDECHHAQVQSNHPYAEIMKVFYKTSSTRLPRIFGMTASPVVGKGASDQANLPKCINSLE 232
Query: 245 NLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISAL 304
NLL AKVYSVE+ ++LE FV+SP + VY Y P IN TSS TC ++L EIK Q + +L
Sbjct: 233 NLLHAKVYSVENQQELERFVASPKINVYCYHPDINMTSS---TC-KKLEEIK-SQCVLSL 287
Query: 305 SRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364
R + DH+SLR+T K L R+HD++ F +ENLG+ GAL AS ILLSGD RNEL+EAEG+
Sbjct: 288 RRNVEDHKSLRSTKKLLQRMHDNLIFSMENLGLWGALQASRILLSGDHAERNELMEAEGS 347
Query: 365 TIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQ 423
DD LC ++ Q++ V A+ C +DGI SD+S ++VLKEPFFS+KLLRLIGILSTFR Q
Sbjct: 348 ASDDRLCDKYLDQSANVLASECIQDGIGSDISYVDVLKEPFFSRKLLRLIGILSTFRRQP 407
Query: 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG 483
+MKCI+FVNRIVTAR+L+YILQNLKFL+ W+C FLVGV++GLKSMSR M IL+KFRS
Sbjct: 408 NMKCIIFVNRIVTARSLAYILQNLKFLSYWKCDFLVGVHSGLKSMSRKTMNIILDKFRSN 467
Query: 484 ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRE 543
ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG Q+E
Sbjct: 468 ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGKQKE 527
Query: 544 LDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKL 603
+DLI++F K+EDRMN EI RTSS+AFT EERIYKVDSSGA IS+ Y +SLLH+YCSKL
Sbjct: 528 IDLIEHFKKDEDRMNMEISVRTSSEAFTDLEERIYKVDSSGASISSVYSISLLHQYCSKL 587
Query: 604 PHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLH 663
HDE+FNPKP+FYYFDD GGT+C I LP++APIHQIV TPQSSMEAAKKDACLKAI+DLH
Sbjct: 588 LHDEYFNPKPEFYYFDDSGGTVCQINLPSSAPIHQIVSTPQSSMEAAKKDACLKAIQDLH 647
Query: 664 KLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPV 723
LGALNDYLLP + NA E E ML SSDSDS E E SR ELHEMLVPA L+ SW+ ++ +
Sbjct: 648 VLGALNDYLLPDQGNAHE-ELMLVSSDSDSCEDEDSREELHEMLVPAALKDSWSNLEH-I 705
Query: 724 RLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG---- 779
LN Y+++F P P DRIYR+FGLFVK+ LP EAE + +DLHL+ GRSVMT+LVPSG
Sbjct: 706 CLNSYYIKFTPIPEDRIYRKFGLFVKAPLPAEAERMVLDLHLSHGRSVMTELVPSGVTEF 765
Query: 780 ----IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN---- 831
I+QA FQEM+L+VIL+RS F +E V LGK D+C+SSSSTFYLLLPVI ++
Sbjct: 766 DENEILQAHNFQEMYLQVILNRSIFETEIVHLGKSDFCKSSSSTFYLLLPVILNECENMI 825
Query: 832 SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFY 891
+VDW+IIRRCLSSP+F P VD K P + L+L +G ESDV NSLVYA +KK F+
Sbjct: 826 TVDWQIIRRCLSSPIFRNPADRVD-KLPPLNDHLRLADGVYRESDVINSLVYAPYKKAFF 884
Query: 892 LVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKL 951
V+ I +NGYSPYKD SSH+++ ++GIHL+ PKQPLL AK LF LRNLLHNRK
Sbjct: 885 FVSRISAGRNGYSPYKD---SSHLEYTWKTFGIHLEFPKQPLLSAKRLFSLRNLLHNRKH 941
Query: 952 EDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSA 1011
SESHELEE+F D+PPELC LKIIGFSKDIGSS+SLLPSIMHRLENLLVAIELK++LSA
Sbjct: 942 GSSESHELEEHFMDIPPELCHLKIIGFSKDIGSSVSLLPSIMHRLENLLVAIELKNMLSA 1001
Query: 1012 SFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELT 1071
SFPEGAE++A +L+ALTTEKC ERFSLERLE+LGDAFLK+AVGR LFLL+D +DEGELT
Sbjct: 1002 SFPEGAEITAHRVLEALTTEKCLERFSLERLEVLGDAFLKFAVGRRLFLLYDALDEGELT 1061
Query: 1072 RRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDG 1131
RRRSN VNNSNL KLA R NLQVYIRDQ FDP QFFALG RCPRIC KETE IHS+ G
Sbjct: 1062 RRRSNVVNNSNLFKLAVRRNLQVYIRDQSFDPGQFFALGHRCPRICEKETEMAIHSRC-G 1120
Query: 1132 RAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEAS 1191
+ P EVRCSK HHWLHKKTIADVVEALVGAFI DSGFKAAT FLKWIGIQV+FEA
Sbjct: 1121 KTP---TTEVRCSKCHHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGIQVDFEAF 1177
Query: 1192 QVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQRLEF 1250
QV N CISS S++ L++S D+ LE LLGH+FLH+GLLLQA VHPS+N+ GGCYQRLEF
Sbjct: 1178 QVINACISSTSYMQLASSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEF 1237
Query: 1251 LGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLS 1310
LGDAVLDYLITSYLYSVYPKLKPGQ+TDLRS+ VNN++FANVAV +S ++FLI D++ LS
Sbjct: 1238 LGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLS 1297
Query: 1311 ETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLD 1370
E I YVD++ TP+ +++ EGP+CPK LGDLVES +GAILLD GF+LN W IMLS LD
Sbjct: 1298 EAIKKYVDFIRTPTLDKDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILD 1357
Query: 1371 PILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNL 1430
I+ FS+LQLNPIREL ELC ++ DLQFP+ K+GG FL EAKV+G D+ +A ATN
Sbjct: 1358 RIMSFSDLQLNPIRELQELCQHHNWDLQFPTSKQGGTFLVEAKVSG--DDICTTASATNA 1415
Query: 1431 SRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNV 1490
+RK+A RIAS QLF KLK GY+ ++SLE +LKSS K EA+LIGYDE PI+ VA D
Sbjct: 1416 NRKDARRIASNQLFKKLKDQGYMLHSESLEEVLKSSSKMEAKLIGYDEKPID-VAFDSFE 1474
Query: 1491 FEKLKISEPQGGSSC------------DIGSP---------------------SLTTGGL 1517
FEKLK+ E S C ++ SP + GG+
Sbjct: 1475 FEKLKMQE-HSNSDCNRKIQPMKMKPKNVCSPCIKPVSDLPQFQIKASEQQPHEIVQGGV 1533
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-APEKIIECIGEPQ 1576
Q S ++R+YE+CAAN WKPP+F+CCKEEG SHLKLFT ++ ++IE ++EC G P+
Sbjct: 1534 QKVSTKARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMKIEDGSGLLLECYGYPK 1593
Query: 1577 AKKKGAAEHAAEGMLWCLEREGYL 1600
+ KK AA+ AAEG + L++EGY
Sbjct: 1594 STKKAAADSAAEGAIAYLKQEGYF 1617
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2096 bits (5430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1086/1645 (66%), Positives = 1283/1645 (77%), Gaps = 82/1645 (4%)
Query: 9 EGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKT----DKDPKQIARKYQL 64
+G P GG I A A+ G A+ G+ KDP+ IAR YQL
Sbjct: 3 KGQAPGGGDPGITVA----------ALPITGLAADEGEGSSSGASSSKKDPRTIARGYQL 52
Query: 65 ELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV 124
ELCKKA+EENIIVY+GTGCGKTHIAVLLI+ L HLIRKPQK+IC+FLAPTVALVQQQA+V
Sbjct: 53 ELCKKALEENIIVYMGTGCGKTHIAVLLIHALGHLIRKPQKNICVFLAPTVALVQQQARV 112
Query: 125 IEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLI 184
IEESI FKV T+CG S+RL++H DWEKE +QYEV VM PQILL LYH FI+MELIALLI
Sbjct: 113 IEESIDFKVGTYCGNSRRLRTHHDWEKEFEQYEVFVMTPQILLRGLYHCFIRMELIALLI 172
Query: 185 FDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLE 244
FDECHHAQV+SNHPYA+IMK FYK ++PRIFGMTASPVVGKGAS QANLPK INSLE
Sbjct: 173 FDECHHAQVQSNHPYAEIMKVFYKTSSTRLPRIFGMTASPVVGKGASDQANLPKCINSLE 232
Query: 245 NLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISAL 304
NLL AKVYSVE+ ++LE FV+SP + VY Y P IN TSS TC ++L EIK Q + +L
Sbjct: 233 NLLHAKVYSVENQQELERFVASPKINVYCYHPDINMTSS---TC-KKLEEIK-SQCVLSL 287
Query: 305 SRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364
R + DH+SLR+T K L R+HD++ F +ENLG+ GAL AS ILLSGD RNEL+EAEG+
Sbjct: 288 RRNVEDHKSLRSTKKLLQRMHDNLIFSMENLGLWGALQASRILLSGDHAERNELMEAEGS 347
Query: 365 TIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQ 423
DD LC ++ Q++ V A+ C +DGI SD+S ++VLKEPFFS+KLLRLIGILSTFR Q
Sbjct: 348 ASDDRLCDKYLDQSANVLASECIQDGIGSDISYVDVLKEPFFSRKLLRLIGILSTFRRQP 407
Query: 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG 483
+MKCI+FVNRIVTAR+L+YILQNLKFL+ W+C FLVGV++GLKSMSR M IL+KFRS
Sbjct: 408 NMKCIIFVNRIVTARSLAYILQNLKFLSYWKCDFLVGVHSGLKSMSRKTMNIILDKFRSN 467
Query: 484 ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRE 543
ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG Q+E
Sbjct: 468 ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGKQKE 527
Query: 544 LDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKL 603
+DLI++F K+EDRMN EI RTSS+AFT EERIYKVDSSGA IS+ Y +SLLH+YCSKL
Sbjct: 528 IDLIEHFKKDEDRMNMEISVRTSSEAFTDLEERIYKVDSSGASISSVYSISLLHQYCSKL 587
Query: 604 PHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLH 663
HDE+FNPKP+FYYFDD GGT+C I LP++APIHQIV TPQSSMEAAKKDACLKAI+DLH
Sbjct: 588 LHDEYFNPKPEFYYFDDSGGTVCQINLPSSAPIHQIVSTPQSSMEAAKKDACLKAIQDLH 647
Query: 664 KLGALNDYLLPQEDNATEDEPMLFSSDSDSYEG-EGSRGELHEMLVPAVLRQSWTKSQYP 722
LGALNDYLLP + NA E E ML SSDSDS E E SR ELHEMLVPA L+ SW+ ++
Sbjct: 648 VLGALNDYLLPDQGNAHE-ELMLVSSDSDSCEADEDSREELHEMLVPAALKDSWSNLEH- 705
Query: 723 VRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG--- 779
+ LN Y+++F P P DRIYR+FGLFVK+ LP EAE + +DLHL+ GRSVMT+LVPSG
Sbjct: 706 ICLNSYYIKFTPIPEDRIYRKFGLFVKAPLPAEAERMVLDLHLSHGRSVMTELVPSGVTE 765
Query: 780 -----IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN--- 831
I+QA FQEM+L+VIL+RS F +E V LGK D+C+SSSSTFYLLLPVI ++
Sbjct: 766 FDENEILQAHNFQEMYLQVILNRSIFETEIVHLGKSDFCKSSSSTFYLLLPVILNECENM 825
Query: 832 -SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWF 890
+VDW+IIRRCLSSP+F P VD K P + L+L +G ESDV NSLVYA +KK F
Sbjct: 826 ITVDWQIIRRCLSSPIFRNPADRVD-KLPPLNDHLRLADGVYRESDVINSLVYAPYKKAF 884
Query: 891 YLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRK 950
+ V+ I +NGYSPYKD SSH+++ ++GIHL+ PKQPLL AK LF LRNLLHNRK
Sbjct: 885 FFVSRISAGRNGYSPYKD---SSHLEYTWKTFGIHLEFPKQPLLSAKRLFSLRNLLHNRK 941
Query: 951 LEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLS 1010
SESHELEE+F D+PPELC LKIIGFSKDIGSS+SLLPSIMHRLENLLVAIELK++LS
Sbjct: 942 HGSSESHELEEHFMDIPPELCHLKIIGFSKDIGSSVSLLPSIMHRLENLLVAIELKNMLS 1001
Query: 1011 ASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGEL 1070
ASFPEGAE++A +L+ALTTEKC ERFSLERLE+LGDAFLK+AVGR LFLL+D +DEGEL
Sbjct: 1002 ASFPEGAEITAHRVLEALTTEKCLERFSLERLEVLGDAFLKFAVGRRLFLLYDALDEGEL 1061
Query: 1071 TRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYD 1130
TRRRSN VNNSNL KLA R NLQVYIRDQ FDP QFFALG RCPRIC KETE IHS+
Sbjct: 1062 TRRRSNVVNNSNLFKLAVRRNLQVYIRDQSFDPGQFFALGHRCPRICEKETEMAIHSRC- 1120
Query: 1131 GRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEA 1190
G+ P EVRCSK HHWLHKKTIADVVEALVGAFI DSGFKAAT FLKWIGIQV+FEA
Sbjct: 1121 GKTP---TTEVRCSKCHHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGIQVDFEA 1177
Query: 1191 SQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQRLE 1249
QV N CISS S++ L++S D+ LE LLGH+FLH+GLLLQA VHPS+N+ GGCYQRLE
Sbjct: 1178 FQVINACISSTSYMQLASSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLE 1237
Query: 1250 FLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVL 1309
FLGDAVLDYLITSYLYSVYPKLKPGQ+TDLRS+ VNN++FANVAV +S ++FLI D++ L
Sbjct: 1238 FLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSL 1297
Query: 1310 SETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFL 1369
SE I YVD++ TP+ +++ EGP+CPK LGDLVES +GAILLD GF+LN W IMLS L
Sbjct: 1298 SEAIKKYVDFIRTPTLDKDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSIL 1357
Query: 1370 DPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATN 1429
D I+ FS+LQLNPIREL ELC ++ DLQFP+ K+GG FL EAKV+G D+ +A ATN
Sbjct: 1358 DRIMSFSDLQLNPIRELQELCQHHNWDLQFPTSKQGGTFLVEAKVSG--DDICTTASATN 1415
Query: 1430 LSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDN 1489
+RK+A RIAS QLF KLK GY+ ++SLE +LKSS K EA+LIGYDE PI+ VA D
Sbjct: 1416 ANRKDARRIASNQLFKKLKDQGYMLHSESLEEVLKSSSKMEAKLIGYDEKPID-VAFDSF 1474
Query: 1490 VFEKLKISEPQGGSSC------------DIGSP---------------------SLTTGG 1516
FEKLK+ E S C ++ SP + GG
Sbjct: 1475 EFEKLKMQE-HSNSDCNRKIQPMKMKPKNVCSPCIKPVSDLPQFQIKASEQQPHEIVQGG 1533
Query: 1517 LQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-APEKIIECIGEP 1575
+Q S ++R+YE+CAAN WKPP+F+CCKEEG SHLKLFT ++ ++IE ++EC G P
Sbjct: 1534 VQKVSTKARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMKIEDGSGLLLECYGYP 1593
Query: 1576 QAKKKGAAEHAAEGMLWCLEREGYL 1600
++ KK AA+ AAEG + L++EGY
Sbjct: 1594 KSTKKAAADSAAEGAIAYLKQEGYF 1618
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis] gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2071 bits (5367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1079/1654 (65%), Positives = 1285/1654 (77%), Gaps = 78/1654 (4%)
Query: 1 MPDGESTVEGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKTDKDPKQIAR 60
MPDGE+ + S IC ++G G E + Q+ +KDP++IAR
Sbjct: 1 MPDGEADISPDDSSS----ICTVNR---------IAGDDDGDECNSMPQQPEKDPRKIAR 47
Query: 61 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
KYQLELCKKA+EENIIVYLGTGCGKTHIAVLLIYEL HLIRKP K++C+FLAPTVALVQQ
Sbjct: 48 KYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYELGHLIRKPLKNVCVFLAPTVALVQQ 107
Query: 121 QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
+VIE+SI FKV +CG S LKSH DWEKEI+Q EVLVM PQILL+ L H FIKMELI
Sbjct: 108 -VRVIEQSIDFKVGVYCGNSNHLKSHRDWEKEIEQNEVLVMTPQILLHTLGHSFIKMELI 166
Query: 181 ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSI 240
+LLIFDECHHAQV+S+HPYA+IMK FYK K PRIFGMTASPVVGKGAS QANLPKSI
Sbjct: 167 SLLIFDECHHAQVQSSHPYAEIMKVFYKTGDGKFPRIFGMTASPVVGKGASNQANLPKSI 226
Query: 241 NSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300
NSLENLLDAKVYSVED E+LE FV+SPVVR+Y Y PV N+ SSSY+T +L EIKR+
Sbjct: 227 NSLENLLDAKVYSVEDNEELELFVASPVVRIYLYAPVANEKSSSYMTYFSKLEEIKRKCL 286
Query: 301 ISALSRKLHDHQSL---RNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNE 357
+ L +K QSL +N K R+HD++ FCLENLG GAL A ILLS D N
Sbjct: 287 LE-LHKKADSCQSLHGLQNAKKVFIRMHDNVVFCLENLGFWGALQACKILLSDDHFEWNA 345
Query: 358 LIEAEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGIL 416
LIEAEGN ID S+C ++ +QA+ +FA++C +D IA DLS +EVL EPFFS+KLLRLIGIL
Sbjct: 346 LIEAEGN-IDASVCDKYLAQAANMFASVCTKDCIAFDLSSVEVLTEPFFSRKLLRLIGIL 404
Query: 417 STFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSI 476
STFRLQ +MK IVFVNRIVTAR+LSY+LQNLKFL SW+C FLVGV++GLKSMSR M SI
Sbjct: 405 STFRLQPNMKGIVFVNRIVTARSLSYVLQNLKFLISWKCDFLVGVHSGLKSMSRKTMNSI 464
Query: 477 LEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLV 536
LEKF++G+LNLL+ATKVGEEGLDIQTCCLV+RFDLPETVASFIQSRGRARMPQSEYAFLV
Sbjct: 465 LEKFKTGKLNLLIATKVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMPQSEYAFLV 524
Query: 537 DSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLL 596
DSGNQ+ELDLI+ F ++EDRMN EI RTS++ F EE++YKVD SGACIS+ Y +SLL
Sbjct: 525 DSGNQKELDLIERFRRDEDRMNMEISSRTSNETFVSIEEKVYKVDESGACISSAYSISLL 584
Query: 597 HRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACL 656
H YCSKLPHDE+F+PKP+F++FDDLGGTICHIILPANAP+HQIVGTPQSS EAAKKDACL
Sbjct: 585 HHYCSKLPHDEYFDPKPQFFFFDDLGGTICHIILPANAPVHQIVGTPQSSREAAKKDACL 644
Query: 657 KAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSW 716
KAIE LHKLG+L+++LLP E + E E ML SS+ ++ EGEG RGELHEMLVPAV ++S
Sbjct: 645 KAIEQLHKLGSLSNFLLPHEKDVNE-ESMLASSEPENNEGEGVRGELHEMLVPAVFKESL 703
Query: 717 TKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLV 776
T S+ + L+ YF++F P P DRIY++FGLF+++ LP EAE ++++LHLA GR V TKLV
Sbjct: 704 TSSENWINLHSYFIKFCPVPEDRIYKKFGLFIRAPLPLEAEQMELNLHLACGRYVATKLV 763
Query: 777 PSG--------IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIF 828
P G I QA FQEMFLKVILDRS+F EFV LGK+ + ESS S FYLLLPV+
Sbjct: 764 PLGCLAFHRDEITQAIYFQEMFLKVILDRSDFVPEFVTLGKNSFFESSPS-FYLLLPVLL 822
Query: 829 --HKN--SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYA 884
H N +VDW+ + RCLSSPVF V+++ LPS LQL NG S D+ENSLVY
Sbjct: 823 CDHGNRVTVDWETVGRCLSSPVFRC----VEKECLPSDDCLQLANGCRSIRDIENSLVYI 878
Query: 885 THKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRN 944
HKK FY +TNI KN SP+K S +SS+++ LI +GI LK+P+QPLL+AKPLF L N
Sbjct: 879 PHKKHFYFITNIDRGKNARSPHKCSSTSSYMEFLIQRFGIQLKYPEQPLLQAKPLFSLHN 938
Query: 945 LLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIE 1004
LLHNR+ EDS + EL+EY D PPELC+LKIIGFSKDIGSS+SLLPSIMHRLENLLVAIE
Sbjct: 939 LLHNRRKEDSVTQELDEYLIDFPPELCELKIIGFSKDIGSSISLLPSIMHRLENLLVAIE 998
Query: 1005 LKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDT 1064
LK LLSASF EGAEV+A +L+ALTTE+CQER SLERLEILGDAFLK+AVGRHLFLLHDT
Sbjct: 999 LKSLLSASFSEGAEVTAYRILEALTTERCQERLSLERLEILGDAFLKFAVGRHLFLLHDT 1058
Query: 1065 VDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERT 1124
+DEGELTR+RSNAVNNSNLLKLA+R NLQVYIRDQPFDP QFFALG CP IC+KE+E +
Sbjct: 1059 LDEGELTRKRSNAVNNSNLLKLASRRNLQVYIRDQPFDPRQFFALGHPCPVICTKESEGS 1118
Query: 1125 IHSQYDGRAPDDLNA-EVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIG 1183
IHS A N EVRCS+GHHWL+KKTIADVVEALVGAFI DSGF+AATAFLKW+G
Sbjct: 1119 IHSSNRSNAKGQENTIEVRCSRGHHWLYKKTIADVVEALVGAFIVDSGFRAATAFLKWLG 1178
Query: 1184 IQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-G 1242
I+V EAS VT +C++S++F+PL+ S+D+++LE L HQF++RGL+LQAFVHPS+N+ G
Sbjct: 1179 IRVNIEASDVTKVCLASRTFMPLAPSIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGG 1238
Query: 1243 GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFL 1302
GCYQRLEFLGDAVLDYLITSYL+SVYPKLKPG LTDLRS LVNN+AFA VAVD+SF +FL
Sbjct: 1239 GCYQRLEFLGDAVLDYLITSYLFSVYPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFL 1298
Query: 1303 IFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVW 1362
I DS LSE I YV+++ P+ ++ EGP+CPKVLGDLVES +GAI LD+GF+LN +W
Sbjct: 1299 ICDSGNLSEAIETYVNFVKRPAVEKDSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIW 1358
Query: 1363 KIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVF 1422
K+MLSFLDPIL SN+ LNP REL E C S+ LQFP+LK+ FL EAKVTG KD+
Sbjct: 1359 KLMLSFLDPILNSSNVLLNPFRELHEFCESHKWKLQFPTLKRDMNFLVEAKVTG--KDIC 1416
Query: 1423 ISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPIN 1482
+ A A N ++KEAIRIAS+Q+ KLK GY+ K+ LE +L+S K++A+LIGYDETPI+
Sbjct: 1417 LDASANNSNKKEAIRIASEQIIVKLKDQGYIRKSNYLEEVLRSGQKTDAKLIGYDETPID 1476
Query: 1483 VVAADDNVFEKLKISEPQGG----------------SSCDIG------SPSLTTGGL--- 1517
+ A D + LKI +P S C I SPS+ GG
Sbjct: 1477 ITAHDPIGLQNLKIQDPSCSDFNPKIRSMSKLTNTCSPCFIAANIQPPSPSVMVGGQPSA 1536
Query: 1518 ----------QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-APE 1566
+ SA+SRL+++CAANCWKPP F+CC EEG SHLK F+++VIVEIE AP+
Sbjct: 1537 TVAYPTSDMDKPTSAKSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYKVIVEIEAAPD 1596
Query: 1567 KIIECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
I+EC G P+ KKK AAEHAAEG LW L+ GYL
Sbjct: 1597 MILECFGAPREKKKAAAEHAAEGALWYLQHVGYL 1630
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2024 bits (5244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1035/1649 (62%), Positives = 1251/1649 (75%), Gaps = 67/1649 (4%)
Query: 1 MPDGESTVEGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKTDKDPKQIAR 60
MPDGES+V +GG + + S + S+++S + KDP++IAR
Sbjct: 1 MPDGESSV---VVAGGQASMEPSLSVSNQLQSLSLS------QDKNHDDSVKKDPRKIAR 51
Query: 61 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
KYQLELCKKAMEENIIVYLGTGCGKTHIAVLL+Y + HLIRKPQK+IC+FLAPTVALV Q
Sbjct: 52 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMYGMGHLIRKPQKNICVFLAPTVALVHQ 111
Query: 121 QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
QAKVI +S FKV T+CG SKRLK H DWE+EI QYEVLVM PQILL+ L H FI ME+I
Sbjct: 112 QAKVIADSTNFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFITMEMI 171
Query: 181 ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSI 240
ALLIFDECHHAQVKSNH YA IMK FYK + KVPRIFGMTASPVVGKGAS++ANL KSI
Sbjct: 172 ALLIFDECHHAQVKSNHAYAVIMKVFYKSNSSKVPRIFGMTASPVVGKGASSEANLAKSI 231
Query: 241 NSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300
NSLE++LDAKVYSVED E L+SFV++PV+ +Y Y + +S Y+ ++ EIKR Q
Sbjct: 232 NSLEHILDAKVYSVEDKE-LQSFVTTPVINIYHYVSTASGETSLYL----KIEEIKR-QC 285
Query: 301 ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIE 360
I+ L R + DHQ N K LNR+HD++ F L+NLG+ GAL AS+ILLSGD + R+EL+E
Sbjct: 286 IANLGRSIEDHQKRMNAKKLLNRMHDNVIFGLQNLGIWGALQASHILLSGDRSERHELVE 345
Query: 361 AEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTF 419
AEGN+ DDSLC ++ +QA+E+F + C +DLS +E+LKEPFFS KLLRLIGILS F
Sbjct: 346 AEGNSSDDSLCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEPFFSAKLLRLIGILSNF 405
Query: 420 RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEK 479
RLQ++MKCI+FVNRIVTAR+LSYILQ LK L WR FLVGV+AGLKSMSR M I++K
Sbjct: 406 RLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVDK 465
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG 539
FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG
Sbjct: 466 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG 525
Query: 540 NQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRY 599
N++ELD+I F K+E RMN EI RTS + + EERI++VDSSGA +S+GY +SLLH+Y
Sbjct: 526 NKKELDIIDGFEKDEYRMNMEITFRTSKETYIIPEERIFRVDSSGASVSSGYSISLLHQY 585
Query: 600 CSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAI 659
CSKLPHDE+F+PKP FYY DD GG CHI LP+NAPI+QI+GTPQ SMEA+K+DACLKAI
Sbjct: 586 CSKLPHDEYFDPKPCFYYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKRDACLKAI 645
Query: 660 EDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKS 719
E+L+ LG L+D LLP++D+A + + SSD D E SRGELHEMLVP+ QSW
Sbjct: 646 EELYNLGTLSDCLLPKQDDAEPEAQVSGSSDEDECEDAISRGELHEMLVPSAFGQSWINE 705
Query: 720 QYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG 779
VRLN Y+++F P P DR+Y+EFGLF+ LP EAE L++DLHLA GRSVMTK VP G
Sbjct: 706 DNIVRLNSYYIKFCPYPEDRVYKEFGLFIMVRLPMEAEKLELDLHLAHGRSVMTKFVPFG 765
Query: 780 IMQ--------AQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN 831
+++ A+ FQEMFLK+ILDR EF SEFV LG + +STFYLLLPV+ +
Sbjct: 766 VVEFDKDEIKMAENFQEMFLKIILDRLEFVSEFVDLGMGAESHTGTSTFYLLLPVVLQEY 825
Query: 832 S----VDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHK 887
VDWK ++RCL SP+F P ++D+K P LQL NG+ S DVENSLVYA HK
Sbjct: 826 GNAMKVDWKTVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHK 885
Query: 888 KWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLH 947
K FY VTN+ ++KNGYSP+ DS +SS+VD+ I + IHLK P+QPLL KP+ L NLLH
Sbjct: 886 KNFYFVTNVNYQKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLH 945
Query: 948 NRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKH 1007
NRK ED+E EL+EY LPPELC+LKIIGFSKDIGSS+SLLPSIMHRL NLLVAIELKH
Sbjct: 946 NRKHEDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKH 1005
Query: 1008 LLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDE 1067
LS+SFPE AE+SA +L+ALTTEKCQERFSLERLE+LGDAFLK+AV RH FL+HD++ E
Sbjct: 1006 RLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHE 1065
Query: 1068 GELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHS 1127
G+LT+RRSNAVNNSNL KLA + NLQVYI DQ FDP QF+ALGR CPR+CS ET+ +IH
Sbjct: 1066 GDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALGRPCPRLCSNETKESIHF 1125
Query: 1128 QYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVE 1187
+ E +C+K HHWLH+KTIADVVEALVGAF+ DSGFKAA AFL WIGIQV+
Sbjct: 1126 CLNSVKEQGKVTETQCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVD 1185
Query: 1188 FEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQ 1246
FEASQV +ICI+S S+LPLS+ +D+ +LE LGH F H+GLLLQAFVHPS+N+L GGCYQ
Sbjct: 1186 FEASQVVDICIASASYLPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQ 1245
Query: 1247 RLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDS 1306
RLEFLGDAVLDYLITSY++S YPKLKPGQLTDLRS+ VNN+AFA +AVD+SF KFL+ DS
Sbjct: 1246 RLEFLGDAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDKFLLCDS 1305
Query: 1307 NVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIML 1366
+ LSE I YVDY+ P S +KEGP+CPK LGDLVES +GAILLDSGFNLN VWKIM
Sbjct: 1306 SGLSEAIKKYVDYIRRPVSDNSIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMT 1365
Query: 1367 SFLDPILKF-SNLQLNPIRELLELCNSYDLDLQF---PSLKKGGKFLAEAKVTGKDKDVF 1422
SFLD I+KF S+LQL+P+R+L ELC S++++L+F PS K +F EAKV+G V
Sbjct: 1366 SFLDSIMKFSSSLQLSPVRDLRELCQSHNMELEFLPVPS-KLTKRFSVEAKVSG--NGVC 1422
Query: 1423 ISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPIN 1482
+A AT ++KEA RIAS LFSK KA G+ K+K+LE +L+S+ K E +LIGYDETPI+
Sbjct: 1423 ETASATGQNKKEACRIASLLLFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPID 1482
Query: 1483 VVAADDNVF---EKLKISEPQ---GGSSCDIGSPSLTTGG--------------LQNR-- 1520
V + ++ + S P+ + +I SP + G +NR
Sbjct: 1483 VTDTNKHIVVNADPYNKSNPEIRPMQETDEICSPCVKPFGQRLQSSAKGKLSQIFENRDC 1542
Query: 1521 --------SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEK-IIEC 1571
+ARSRLYELCA+ CWKPP+F+CCK EG HLK FT +V +EIE + I+E
Sbjct: 1543 SSDLSGTGTARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEF 1602
Query: 1572 IGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
+GEP +KKK AAE AAEG W L+ EGYL
Sbjct: 1603 VGEPLSKKKDAAESAAEGAFWYLQHEGYL 1631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2018 bits (5227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1036/1653 (62%), Positives = 1258/1653 (76%), Gaps = 75/1653 (4%)
Query: 1 MPDGESTVEGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKTDKDPKQIAR 60
MPDGES S +GG + + S + S+++S V +S KDP++IAR
Sbjct: 1 MPDGES----SAVAGGQVSMEPSLSLSDQLQSLSLSQVKNHDDS------VKKDPRKIAR 50
Query: 61 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
+YQLELCKKAMEENIIVYLGTGCGKTHIAVLL++E+ LIRKPQK+IC+FLAPTVALV Q
Sbjct: 51 RYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGDLIRKPQKNICVFLAPTVALVHQ 110
Query: 121 QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
QAKVI +S FKV T+CG SKRLK H DWE+E+ QYEVLVM PQIL + L H FI ME+I
Sbjct: 111 QAKVIADSTDFKVGTYCGSSKRLKHHQDWEQEMGQYEVLVMTPQILHHNLSHCFITMEMI 170
Query: 181 ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSI 240
ALLIFDECHHAQVKSNH YA IMK FYK + KVPRIFGMTASPVVGKGAS++ANL KSI
Sbjct: 171 ALLIFDECHHAQVKSNHAYAVIMKVFYKSNSTKVPRIFGMTASPVVGKGASSEANLAKSI 230
Query: 241 NSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300
NSLE++LDAKVYSVED E L+SFV++PV+ +Y Y T+S + ++ EIKR Q
Sbjct: 231 NSLEHILDAKVYSVEDKE-LQSFVTTPVINIYHYV----STASGETSLHLKIEEIKR-QC 284
Query: 301 ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIE 360
I+ L R + DHQ NT K LNR+HD++ F L+NLG+ GAL AS+ILLSGD + R+EL+E
Sbjct: 285 IATLGRSIEDHQKRMNTKKLLNRMHDNVIFGLQNLGIWGALQASHILLSGDHSERHELVE 344
Query: 361 AEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTF 419
A+GN+ DDSLC ++ +QA+E+F + C + DLS +E+LKEPFFS KLLRLIGILS F
Sbjct: 345 ADGNSSDDSLCDKYLAQAAELFTSQCMIGILTFDLSSVEILKEPFFSAKLLRLIGILSNF 404
Query: 420 RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEK 479
RLQ++MKCI+FVNRIVTAR+LSYILQ LK L WR FLVGV+AGLKSMSR M I++K
Sbjct: 405 RLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVDK 464
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG 539
FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG
Sbjct: 465 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG 524
Query: 540 NQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRY 599
N++E+D+I F ++E RMN E+ RTS + + EERI+++DSSGA +S+GY +SLLH+Y
Sbjct: 525 NKKEIDVIDGFKEDEYRMNMEVTFRTSKETYIIPEERIFRIDSSGASVSSGYSISLLHQY 584
Query: 600 CSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAI 659
CSKLPHDE+F+PKP F+Y DD GG CHI LP+NAPI+QI+GTPQ SMEA+K++ACLKAI
Sbjct: 585 CSKLPHDEYFDPKPSFHYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKREACLKAI 644
Query: 660 EDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKS 719
E+L+ LGAL+D LLP++D+A + + SSD D + SRG+LHEMLVP+ QSW
Sbjct: 645 EELYNLGALSDCLLPKQDDAEPEVQVSGSSDEDESDA-ISRGKLHEMLVPSAFGQSWINE 703
Query: 720 QYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG 779
VRLN Y+++F P P DR+Y+EFGLF+ + LP EAE L++DLHLA GRSVMT VP G
Sbjct: 704 DNIVRLNSYYIKFCPYPEDRVYKEFGLFMMTCLPMEAEKLELDLHLAHGRSVMTMFVPFG 763
Query: 780 IMQ--------AQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN 831
+++ A+ FQEMFLK+ILDR EF SEFV LG S +STFYLLLPV+ +
Sbjct: 764 VVEFNKDEIKMAENFQEMFLKIILDRLEFISEFVDLGMSAESHSGTSTFYLLLPVVLQEY 823
Query: 832 S----VDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHK 887
VDWKI++RCL SP+F P ++D+K P LQL NG+ S +VENSLVYA HK
Sbjct: 824 GNAMEVDWKIVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRNVENSLVYAPHK 883
Query: 888 KWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLH 947
K FY VTN+ +EKNGYSP+ DS +SS+VD+ I + IHLK PKQPLL KP+ L NLLH
Sbjct: 884 KNFYFVTNVNYEKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPKQPLLHVKPVSNLHNLLH 943
Query: 948 NRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKH 1007
NRK ED+E EL+EY LPPELC+LK+IGFSKDIGSS+SLLPSIMHRL NLLVAIELKH
Sbjct: 944 NRKREDAEPQELDEYLIYLPPELCELKVIGFSKDIGSSISLLPSIMHRLGNLLVAIELKH 1003
Query: 1008 LLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDE 1067
+LS+SFPE AE+SA +L+ALTTEKCQERFSLERLE+LGDAFLK+AV RH FL+HD++ E
Sbjct: 1004 MLSSSFPEAAEISAIRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHE 1063
Query: 1068 GELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHS 1127
G+LT+RRSNAVNNSNL KLA + NLQVYI DQ FDP QF+ALGR CPR+CS ETE +IH
Sbjct: 1064 GDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALGRPCPRVCSNETEESIHF 1123
Query: 1128 QYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVE 1187
+ E RCSK HHWLH+KTIADVVEALVGAF+ DSGFKAA AFL WIGIQV+
Sbjct: 1124 CLNSVMQQGKATETRCSKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVD 1183
Query: 1188 FEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQ 1246
FEASQV +ICI+S S+ PLS+ +D+ +LE LGH F H+GLLLQAFVHPS+N+L GGCYQ
Sbjct: 1184 FEASQVVDICIASASYSPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQ 1243
Query: 1247 RLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDS 1306
RLEFLGDAVLDYLITSYL+S YPKLKPGQLTDLRS+ VNN+AFA +AVD+SF FL+ DS
Sbjct: 1244 RLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDNFLLCDS 1303
Query: 1307 NVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIML 1366
+ LSE I YVDY+ P S +KEGP+CPK LGDLVES +GAILLDSGFNLN VWKIM
Sbjct: 1304 SGLSEAIKKYVDYVRRPVSDNGIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMT 1363
Query: 1367 SFLDPILKF-SNLQLNPIRELLELCNSYDLDLQF---PSLKKGGKFLAEAKVTGKDKDVF 1422
SFLDPI+KF S+LQL+P+R+L ELC S++L+L+F PS K +F EAKV+G V
Sbjct: 1364 SFLDPIMKFSSSLQLSPVRDLRELCQSHNLELEFLPVPS-KLTKRFSVEAKVSG--NGVC 1420
Query: 1423 ISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPIN 1482
+A AT ++KEA RIASQ LF K KA G+ K+K+LE +L+S+ K E +LIGYDETPI+
Sbjct: 1421 ETASATGQNKKEACRIASQLLFLKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPID 1480
Query: 1483 VVAADDNVFEKLKI-SEPQGGSS---C------DIGSPSLTTGG--------------LQ 1518
V D N + + + ++P S+ C +I SP + G +
Sbjct: 1481 VT--DTNTAKHIVVNADPYNNSNPEICPMQLTDEICSPCVKPFGQRLQSSAKGKLSQIFE 1538
Query: 1519 NR----------SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEI-EAPEK 1567
NR +ARSRLYELCAA CWKPP+F+CCK+EG HLK FT +V +EI EA
Sbjct: 1539 NRDCGSDSSGTGTARSRLYELCAAYCWKPPSFECCKKEGPDHLKQFTCKVTLEIEEAQNL 1598
Query: 1568 IIECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
I+E +GEP +KKK AAE AAEG LW L+ EG+L
Sbjct: 1599 ILEFVGEPLSKKKDAAESAAEGALWYLQHEGFL 1631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa] gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1943 bits (5034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1654 (61%), Positives = 1236/1654 (74%), Gaps = 121/1654 (7%)
Query: 1 MPDGESTVEGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKTDKDPKQIAR 60
M G T E S S GGT +S++V G G ES G QKT+KDP+++AR
Sbjct: 1 MSGGHVTGEHSSLSVGGTNARVVSSSIV----------GDGEESGSGLQKTEKDPRKMAR 50
Query: 61 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
KYQLELCKKA+EENIIVYLGTGCGKTHIAVLLIYE+ HLIR+PQKS C+FLAPTVALV Q
Sbjct: 51 KYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYEMGHLIRQPQKSACVFLAPTVALVHQ 110
Query: 121 QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
QAKVIE+S FKV +CG S RLK+H WEKEI+Q EVLVM PQILLY L H FIKM+LI
Sbjct: 111 QAKVIEDSTDFKVGIYCGKSNRLKTHSSWEKEIEQNEVLVMTPQILLYNLSHSFIKMDLI 170
Query: 181 ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQ------- 233
ALLIFDECHHAQVKS HPYA+IMK FYK + K+PRIFGMTASPVVGK +
Sbjct: 171 ALLIFDECHHAQVKSGHPYAQIMKVFYKNNDGKLPRIFGMTASPVVGKEKYRERVTSLEI 230
Query: 234 -------ANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
NLP+SINSLENLLDAKVYSVED E+LE FV+SPV+RVY YGPV N TSSSY
Sbjct: 231 LLHHLIRENLPRSINSLENLLDAKVYSVEDKEELECFVASPVIRVYLYGPVANGTSSSYE 290
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSL---RNTTKQLNRLHDSMKFCLENLGVCGALHA 343
L +KR Q I + +K +QSL R+T + L R+H+++ FCLENLG+ GAL A
Sbjct: 291 AYYNILEGVKR-QCIVEIGKKTDGNQSLESLRSTKRMLIRMHENIIFCLENLGLWGALQA 349
Query: 344 SYILLSGDETMRNELIEAEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKE 402
ILLSGD + N LIEAEGNT D S+C R+ +QA+ VFAA C RDG+ S++S +EVLKE
Sbjct: 350 CRILLSGDHSEWNALIEAEGNTSDVSMCDRYLNQATNVFAADCTRDGVTSNVSQVEVLKE 409
Query: 403 PFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVN 462
PFFS+KLLRLI ILS FRLQ MKCIVFVNRIVTAR+LS+ILQNLKFL SW+C FLVGV+
Sbjct: 410 PFFSRKLLRLIEILSNFRLQPDMKCIVFVNRIVTARSLSHILQNLKFLTSWKCDFLVGVH 469
Query: 463 AGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
+GLKSMSR M ILE+FR+G+LNLL+ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR
Sbjct: 470 SGLKSMSRKTMNVILERFRTGKLNLLLATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 529
Query: 523 GRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDS 582
GRARMPQSEY FLVDSGNQ+E DLI+ F +E RMN EI DRTS + F EE+IYKV +
Sbjct: 530 GRARMPQSEYVFLVDSGNQKERDLIEKFKIDEARMNIEICDRTSRETFDSIEEKIYKVHA 589
Query: 583 SGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGT 642
+GA I++G +SLL +YCSKLPHDE+F+PKPKF+YFDD GT+CHIILP+NAP H+IVGT
Sbjct: 590 TGASITSGLSISLLQQYCSKLPHDEYFDPKPKFFYFDDSEGTVCHIILPSNAPTHKIVGT 649
Query: 643 PQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGE 702
PQSS+E AKKDACLKAIE LHKLGAL+++LLPQ+++ E E L SSDSD+ E + SRGE
Sbjct: 650 PQSSIEVAKKDACLKAIEQLHKLGALSEFLLPQQEDTNELE--LVSSDSDNCEDKDSRGE 707
Query: 703 LHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVD 762
L EMLVPAVL++SWT+ + P+ LN Y+++F P P DRIY++FGLF+K+ LP EA+ + ++
Sbjct: 708 LREMLVPAVLKESWTELEKPIHLNSYYIEFCPVPEDRIYKQFGLFLKAPLPLEADKMSLE 767
Query: 763 LHLARGRSVMTKLVPSG--------IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCE 814
LHLARGRSVMTKLVPSG I A FQE+FLK ILDRSEF E+VPLGKD +
Sbjct: 768 LHLARGRSVMTKLVPSGLSKFSTDEITHATNFQELFLKAILDRSEFVHEYVPLGKDALSK 827
Query: 815 SSSSTFYLLLPVIFH----KNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNG 870
S TFYLLLPVIFH + +VDW+IIRRCLSSPVF P +VD+ LPS+ LQL NG
Sbjct: 828 -SCPTFYLLLPVIFHVSERRVTVDWEIIRRCLSSPVFKNPANAVDKGILPSNDCLQLANG 886
Query: 871 WSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPK 930
SS DVENSLVY H+K FY +TNIV EKNG SP K S++ SH DHL +
Sbjct: 887 CSSIRDVENSLVYTPHQKKFYFITNIVPEKNGDSPCKGSNTRSHKDHLTT---------- 936
Query: 931 QPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLP 990
+E EL+E+F DL PELC+LKIIGFSKDIGSS+SLLP
Sbjct: 937 -----------------------TELQELDEHFVDLAPELCELKIIGFSKDIGSSISLLP 973
Query: 991 SIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFL 1050
S+MHRLENLLVAIELK +LSASF EG +V+A +L+ALTTEKCQER SLERLE LGDAFL
Sbjct: 974 SVMHRLENLLVAIELKCILSASFSEGDKVTAHRVLEALTTEKCQERLSLERLETLGDAFL 1033
Query: 1051 KYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALG 1110
K+AVGRH FLLHDT+DEGELTR+RSNA V+IRDQPFDP QFFALG
Sbjct: 1034 KFAVGRHFFLLHDTLDEGELTRKRSNA----------------VFIRDQPFDPYQFFALG 1077
Query: 1111 RRCPRICSKETERTIHSQYDGRAPDDL-NAEVRCSKGHHWLHKKTIADVVEALVGAFIDD 1169
CPRIC+KE+E TIHSQ +EVRCSKGHHWLH KT++DVVEAL+GAF+ D
Sbjct: 1078 HPCPRICTKESEGTIHSQCGSHVTGQAKGSEVRCSKGHHWLHNKTVSDVVEALIGAFLVD 1137
Query: 1170 SGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLL 1229
SGFKAA AFL+WIGI+V+F+ SQV NIC +S+++ L+ S+D+ATLE LLGHQFL++GLL
Sbjct: 1138 SGFKAAIAFLRWIGIKVDFDDSQVINICQASRTYAMLNPSMDLATLENLLGHQFLYKGLL 1197
Query: 1230 LQAFVHPSFNRLGGCY--QRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287
LQAFVHPS ++ GG + L+F + I YPK+KPG LTDLRS+LVNN+
Sbjct: 1198 LQAFVHPS-HKNGGEFGVMILQFAMTLMFPPEIGVPWRCFYPKMKPGHLTDLRSVLVNNR 1256
Query: 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSL 1347
AFA+VAVD+SF+++LI DS+ LS +VD++ TP S R + EGP+CPKVLGDLVESS+
Sbjct: 1257 AFASVAVDRSFHEYLICDSDALSAATKKFVDFVRTPKSERRLLEGPKCPKVLGDLVESSV 1316
Query: 1348 GAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGK 1407
GAILLD+GF+LN +WKIMLSFLDPI FSNLQ+NP+REL ELC S++ D + P+ KKG
Sbjct: 1317 GAILLDTGFDLNHIWKIMLSFLDPISSFSNLQINPVRELKELCQSHNWDFEVPASKKGRT 1376
Query: 1408 FLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSP 1467
F + ++GKD + ISA A+N ++KEAIR+AS++++++LK G +P T SLE +L++S
Sbjct: 1377 FSVDVTLSGKDMN--ISASASNSNKKEAIRMASEKIYARLKDQGLIPMTNSLEEVLRNSQ 1434
Query: 1468 KSEARLIGYDETPINVVAADDNVFEKLKISEPQG-------GSSCD-----IGSPSLT-- 1513
K EA+LIGYDETPI+ VA D + FE KI EP G SC + + SL+
Sbjct: 1435 KMEAKLIGYDETPID-VALDAHGFENSKIQEPFGINCSYEVRDSCPPRFEAVDAWSLSPL 1493
Query: 1514 --TGGLQNR----SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEI-EAPE 1566
TGG ++ +ARSRL E+CAAN WKPP+F+CC EEG SHLK FT++V+VEI EAPE
Sbjct: 1494 DFTGGQPSKVDLGTARSRLREICAANSWKPPSFECCTEEGPSHLKSFTYKVVVEIEEAPE 1553
Query: 1567 KIIECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
EC+G PQ KKK AAE AAEG LW L+ + +L
Sbjct: 1554 MSFECVGSPQMKKKAAAEDAAEGALWYLKHQRHL 1587
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1898 bits (4916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 987/1644 (60%), Positives = 1214/1644 (73%), Gaps = 85/1644 (5%)
Query: 14 SGGGTKICAATSAVVEEC----SVAVSGVGFGAESSVGAQKTDKDPKQIARKYQLELCKK 69
SGGG + A +S E ++V + SSV +K DP++IARKYQ++LCKK
Sbjct: 2 SGGGYENGATSSPSAEPSLITNQLSVLSINDDEHSSVSVEK---DPRKIARKYQMDLCKK 58
Query: 70 AMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129
A+EEN++VYLGTG GKTHIAVLLIYE+ HLI+KPQKSIC+FLAPTVALVQQQAKVIEESI
Sbjct: 59 ALEENVVVYLGTGSGKTHIAVLLIYEMGHLIKKPQKSICVFLAPTVALVQQQAKVIEESI 118
Query: 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECH 189
FKV T+CG SK LKSH DWEKE++QYEVLVM PQILL+ L H +I++E IALLIFDECH
Sbjct: 119 DFKVGTYCGKSKHLKSHQDWEKEMEQYEVLVMTPQILLHNLSHCYIRIEFIALLIFDECH 178
Query: 190 HAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA 249
+AQV+S+HPYA+IMK FYKPD++K PRIFGMTASP+ GKGA+ + LE LL +
Sbjct: 179 YAQVESDHPYAEIMKIFYKPDVVKQPRIFGMTASPISGKGAT--------VEGLETLLRS 230
Query: 250 KVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLH 309
KVYSVED ++LE FV+SP V VYQYGP + + +Y S++L EIK Q + L +K
Sbjct: 231 KVYSVEDKDELEQFVASPKVNVYQYGPGSSCHTKAY---SQKLEEIKH-QCVKELHKKAV 286
Query: 310 DHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS 369
D +LRNT K L RLH + F LENLGV GAL AS ILL GD R++++EAE N DDS
Sbjct: 287 D-STLRNTKKMLKRLHGHLIFSLENLGVLGALQASCILLKGDHHERHQMVEAEVNASDDS 345
Query: 370 LC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCI 428
LC R+ SQ VF + C +DG+ DL+ +EVLKEP+FSKKLLRLIGILS F +Q MKCI
Sbjct: 346 LCDRYLSQVDTVFTSGCAKDGMNPDLALMEVLKEPYFSKKLLRLIGILSNFGVQPDMKCI 405
Query: 429 VFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLL 488
VFVNRIVTAR+LSYILQ+LK L+SW+C FLVGV++GLKSMSR IL+KFRSGELNLL
Sbjct: 406 VFVNRIVTARSLSYILQHLKILSSWKCGFLVGVHSGLKSMSRKNTNIILDKFRSGELNLL 465
Query: 489 VATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIK 548
+ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMP+SEYAFLVD GNQRELDLI+
Sbjct: 466 IATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPKSEYAFLVDRGNQRELDLIE 525
Query: 549 NFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEF 608
+F++ E +M+ EI R S +E IYKVD +GA +S+ +SLLH YCSKLPHDE+
Sbjct: 526 HFTRSEAQMDDEISSRKSRTMVADFQENIYKVDMTGATVSSALSISLLHHYCSKLPHDEY 585
Query: 609 FNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGAL 668
F PKP+FYYFDD+ GTIC +ILP+NA +H I PQSS+EAAKKDACL+A + LH+LGAL
Sbjct: 586 FCPKPQFYYFDDVDGTICKLILPSNAAMHSIESAPQSSIEAAKKDACLRACKSLHELGAL 645
Query: 669 NDYLLPQEDNATEDEPMLFS-SDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNF 727
DYLLP D A ED+ ++ SDS+ EGE +R ELHEM+VPA L++ WT++ PV LN
Sbjct: 646 TDYLLP--DQADEDKDLVPDCSDSECCEGEDAREELHEMIVPASLKEPWTETDNPVCLNS 703
Query: 728 YFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG-------- 779
Y++ F P P DR+Y++FGLF+K+ LP EAE +K+DL+LARGRSV T+L+PSG
Sbjct: 704 YYISFFPFPNDRVYKKFGLFLKAPLPQEAERMKLDLNLARGRSVKTELIPSGTTSFENNE 763
Query: 780 IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIF---HKNSVDWK 836
I A++FQ MF K+ILDRSEF SEFV L K D+ +S S FYLLLPV K SVDW+
Sbjct: 764 IQLAEKFQRMFFKIILDRSEFISEFVSLEKKDFVDSGSK-FYLLLPVNLFGHDKISVDWE 822
Query: 837 IIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNI 896
++RRCLSSPVFGT + + S LQL NG S DV NSLVY K F+ ++++
Sbjct: 823 LVRRCLSSPVFGTSVCTSNNMS-KFEEQLQLANGSKSVHDVVNSLVYVPCKDAFFFISDV 881
Query: 897 VFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSES 956
V +KN YS YK DS +HV+H ++ +HL +P QPL++AK LF L NLL RK SE
Sbjct: 882 VKDKNAYSMYK--DSKNHVEHYYDTFSVHLLYPDQPLIKAKQLFCLENLL--RKKGYSEL 937
Query: 957 HELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEG 1016
+ EE+F +LPPE+CQLKIIGFSKDIGSSLSLLPSIMHRLE+LLVAIELK LSASFPEG
Sbjct: 938 RDKEEHFVELPPEICQLKIIGFSKDIGSSLSLLPSIMHRLESLLVAIELKGCLSASFPEG 997
Query: 1017 AEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSN 1076
E++ + +L+ALTTE C E FSLERLE+LGDAFLK+AVGRHLFLLHD DEG+LTR+RSN
Sbjct: 998 RELAIDHVLEALTTENCHESFSLERLEVLGDAFLKFAVGRHLFLLHDAFDEGQLTRKRSN 1057
Query: 1077 AVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDD 1136
AVNNSNL +A + NLQ YIRDQ F+P F+ +GR CP C+K+TE+ IH G D
Sbjct: 1058 AVNNSNLYMVAIKKNLQAYIRDQSFEPDHFYVVGRPCPVTCNKQTEKNIHG-LCGSGTDG 1116
Query: 1137 LNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNI 1196
+ EVRCSK HHWL KKTIAD+VEALVGAF+ DSGFKAA AFLKWIGI +F+ Q+ +I
Sbjct: 1117 IKTEVRCSKYHHWLRKKTIADIVEALVGAFVVDSGFKAAIAFLKWIGIHTDFKEPQLKSI 1176
Query: 1197 CISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQRLEFLGDAV 1255
C +SK F+PL+ +D+ +E LLG+ F+H+GLL+QAF+HPS+NR GGCYQRLEFLGDAV
Sbjct: 1177 CSASKVFMPLADEIDVLGIERLLGYSFIHKGLLIQAFIHPSYNRHGGGCYQRLEFLGDAV 1236
Query: 1256 LDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINN 1315
LDYLITSYLYSVYPKLKPGQLTDLRS+ VNN FA VAV QSF+ ++ DS+ L E+I
Sbjct: 1237 LDYLITSYLYSVYPKLKPGQLTDLRSISVNNNTFAVVAVRQSFHSHILCDSSDLRESITR 1296
Query: 1316 YVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF 1375
YV+++ P STR + PK LGDLVES +GAILLD+GF+LN W+I+LSFL P++ F
Sbjct: 1297 YVNFIGRPDSTRGWVKSHLVPKALGDLVESCMGAILLDTGFDLNRAWQIILSFLKPVMSF 1356
Query: 1376 SNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEA 1435
+ LQLNP REL ELC S+ +L+F KK G FL EA+V G ++V +A A N+++K A
Sbjct: 1357 TRLQLNPTRELYELCQSFGWNLKFLPSKKDGNFLVEARVNG--ENVSAAASALNINKKSA 1414
Query: 1436 IRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLK 1495
R+A+Q + S LKA GY PK+KSLE +LK++ K EA+LIGYDETP + D++ +K +
Sbjct: 1415 QRMAAQIVCSSLKAQGYRPKSKSLEQVLKAAIKMEAKLIGYDETPCVLTTICDDL-DKHE 1473
Query: 1496 ISEP-----------QGGSSCDIGSPSL----------------------------TTGG 1516
SE + SC+ S S TGG
Sbjct: 1474 TSESDCHLKVFPVNEELARSCNFKSKSTRKLLSTEASVQCNSDQTIMSNGSKEDAKATGG 1533
Query: 1517 LQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQ 1576
+ SA+SRL+E+CAANCWKPP F+CCKE G SHLK FTFRV+VEIE ++IE GE Q
Sbjct: 1534 SKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKEFTFRVLVEIEETSRVIESYGEAQ 1593
Query: 1577 AKKKGAAEHAAEGMLWCLEREGYL 1600
AKKK AAEHAAEG LW L++EGYL
Sbjct: 1594 AKKKDAAEHAAEGALWFLKQEGYL 1617
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457995|ref|XP_004146733.1| PREDICTED: dicer-like protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1890 bits (4896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1002/1659 (60%), Positives = 1227/1659 (73%), Gaps = 73/1659 (4%)
Query: 1 MPDGESTVEGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKTDKDPKQIAR 60
MPDGE+ P+ + TS V E + S + ++ + ++KDP++IAR
Sbjct: 1 MPDGETN-----PTTEVSDNFRPTSFVPVERLMGPSLMN-DQDAGSSTRTSEKDPRRIAR 54
Query: 61 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
KYQLELCKKA+EENIIVYLGTGCGKTHIA+LLIYEL+HLIR Q IC+FLAPTVALVQQ
Sbjct: 55 KYQLELCKKALEENIIVYLGTGCGKTHIAILLIYELSHLIRSSQNGICVFLAPTVALVQQ 114
Query: 121 QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
QAKVIE+S+ FKVR +CGGSK L SH DWE+E+++YEV VM P+I L LYH +IKM+ +
Sbjct: 115 QAKVIEDSLDFKVRVYCGGSKILNSHYDWEREMEEYEVFVMTPEIFLRNLYHCYIKMDCV 174
Query: 181 ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSI 240
LLIFDECHHAQVKS+H YA+IM+ FYK + K PRIFGMTASPVVGKGA Q NL +SI
Sbjct: 175 ELLIFDECHHAQVKSDHSYAEIMRVFYKANDPKRPRIFGMTASPVVGKGACHQQNLSRSI 234
Query: 241 NSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300
NSLE LLDAKVYSVE+ E+L +FVSSP+V +Y YGPV N +SSS+++ S +L ++KR +
Sbjct: 235 NSLEKLLDAKVYSVENREELHAFVSSPLVNIYYYGPVANGSSSSFMSYSSRLEDVKR-KC 293
Query: 301 ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIE 360
I AL + +H+ L T K L R+H+++ FCLE+LGV GAL A ILLSGD + R+ELIE
Sbjct: 294 IVALGQVKSEHEVLLATKKLLFRMHENILFCLESLGVWGALQACKILLSGDNSERSELIE 353
Query: 361 A-EGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILST 418
A E N +DSL R+ +QA+E+FA+ C++DG SD+ +++L++PFFSKKLLRLIGILS+
Sbjct: 354 AAERNPKNDSLSDRYLNQAAEIFASGCKKDGGISDMLNVDILEDPFFSKKLLRLIGILSS 413
Query: 419 FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILE 478
FR Q +MKCI+FVNRIV AR+LSYILQNL FLA W+C FLVGV++ L+SMSR M IL
Sbjct: 414 FRQQLNMKCIIFVNRIVIARSLSYILQNLNFLAYWKCDFLVGVHSKLRSMSRKTMNHILT 473
Query: 479 KFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDS 538
KFRSGELNLL+ATKVGEEGLDIQTCCLVIRFDLPETV+SFIQSRGRARMPQSEYAFLVDS
Sbjct: 474 KFRSGELNLLIATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVDS 533
Query: 539 GNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHR 598
GN++EL LI F K+E+RMNREI R+S++ F EE IY+V S+GA I++G +SLLH
Sbjct: 534 GNEKELGLINEFRKDENRMNREIYSRSSNETFDSHEESIYRVASTGASITSGRSISLLHE 593
Query: 599 YCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKA 658
YCSKLPHD++F+PKP+F Y+DDLGGT+CH+ LP+NAPI QIV QSS +AAKKDACLKA
Sbjct: 594 YCSKLPHDDYFDPKPQFSYYDDLGGTVCHVNLPSNAPIPQIVSRSQSSKDAAKKDACLKA 653
Query: 659 IEDLHKLGALNDYLLPQED--NATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSW 716
+E+LHKLGAL+DYLLP +A E E L SSDSDS E E SR ELHEM+ PA L++SW
Sbjct: 654 VEELHKLGALSDYLLPMRGRGSANEQESGLNSSDSDSSEDETSRRELHEMIFPAALKESW 713
Query: 717 TKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLV 776
T S Y V L Y ++ PDP DR Y+EFGLFVK+ LP EAE + ++LHLARGRSVM L+
Sbjct: 714 TGSGYLV-LYCYHIKCTPDPRDRNYKEFGLFVKAPLPQEAERMGLELHLARGRSVMVNLI 772
Query: 777 PSG--------IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIF 828
PSG I QA+ FQEMFLKVILDR EF E++PL + S S+ YLLLP+IF
Sbjct: 773 PSGVVELLEEEITQAESFQEMFLKVILDRLEFVQEYIPLRNN--ASRSVSSSYLLLPMIF 830
Query: 829 HKNS----VDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYA 884
H N +DW +IRRCLSS +F + + + S L L++G SD+ENSLVY
Sbjct: 831 HDNEGSLFIDWNVIRRCLSSKIFQNDACLIVKGTASSDTHLMLYDGHRRSSDIENSLVYV 890
Query: 885 THKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRN 944
+K F+ VTNI KNG+S YK+S SSH +HL + +GIHL +P+QPLLRAKPLF L N
Sbjct: 891 PYKGEFFFVTNIERGKNGHSQYKNSGFSSHFEHLKTKFGIHLNYPEQPLLRAKPLFLLHN 950
Query: 945 LLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIE 1004
LHNRK EDSE+ LEEYF +LPPE+CQLKIIGFSKDIGSS+SLLPSIMHRLENLLVAIE
Sbjct: 951 WLHNRKREDSEARHLEEYFIELPPEVCQLKIIGFSKDIGSSISLLPSIMHRLENLLVAIE 1010
Query: 1005 LKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDT 1064
LK L+A+FP GAEV+A +L+ALTTEKCQER SLERLEILGD+FLK+AV R+LFL HD
Sbjct: 1011 LKCRLAAAFPAGAEVTANRILEALTTEKCQERISLERLEILGDSFLKFAVARYLFLTHDK 1070
Query: 1065 VDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERT 1124
DEGELTRRRS V N NLLKLA R NLQVYIRDQPF+P QF+ LGR CPRIC++ET +
Sbjct: 1071 FDEGELTRRRSYLVKNFNLLKLATRKNLQVYIRDQPFEPSQFYLLGRPCPRICNEETSKD 1130
Query: 1125 IHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGI 1184
IHS D N E +CSKGHHWL KKTI+DVVEALVGAF+ DSGFKAA AFLKWIGI
Sbjct: 1131 IHSHDDATNNAKAN-ETKCSKGHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGI 1189
Query: 1185 QVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG- 1243
QVEFEAS VT+ ++S +++ L+ S+D++ L+ LGH+FLH+GLLLQA VHPS+++ GG
Sbjct: 1190 QVEFEASLVTDALMASNAYVLLADSIDISALQNSLGHRFLHKGLLLQALVHPSYHKHGGG 1249
Query: 1244 CYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
CYQRLEFLGDAVLDYLITSYLYS YPKLKPGQLTDLRS+ V N+AFANVAVD+ FYKFL+
Sbjct: 1250 CYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVAVDRFFYKFLL 1309
Query: 1304 FDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWK 1363
DS L I +YV ++ P R+ E PRCPK LGDLVESS+GA+L+D+GF++N VWK
Sbjct: 1310 CDSTSLLSDIKSYVHFIKAPPFERDSLEQPRCPKALGDLVESSVGAVLVDTGFDMNCVWK 1369
Query: 1364 IMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFI 1423
IMLSF+DPI+ FS QL+PIR++ E C + L+F S K G + +A+V G +
Sbjct: 1370 IMLSFIDPIMSFSGFQLSPIRDITEFCQNCGWKLKFNSSKMEGYYSVKAEVKGGN--FHA 1427
Query: 1424 SACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINV 1483
+A A N +K+A +IA+ + +KLKA G++P+ SLE ILKSS K E +LIGYDETP
Sbjct: 1428 TASAANRRKKDAAKIAANLILTKLKAKGFIPEVNSLEEILKSSKKMEPKLIGYDETPSIT 1487
Query: 1484 VAADDNVFEKLKI-------SEPQGGSSCDIGSP------------SLTTGGLQ------ 1518
+ DN L + S+P+ D P S T G Q
Sbjct: 1488 IDQVDNGHRTLNVLEFSSEHSDPRMHCVVDNSEPVRITRISKMLVSSSRTAGEQLKPAFE 1547
Query: 1519 -----------------NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVE 1561
+ARSRLYE+CAAN W P+FDC EEG SHLK+FT++V++E
Sbjct: 1548 GHDSPTDLQVISVGRSGKTTARSRLYEVCAANHWNRPSFDCMNEEGPSHLKMFTYKVVLE 1607
Query: 1562 I-EAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREGY 1599
I EAP+ I E G P KKK AAEHAAE LW LE+ GY
Sbjct: 1608 IEEAPDTIFEFFGAPHLKKKAAAEHAAEAALWYLEKGGY 1646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|379987682|gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata] | Back alignment and taxonomy information |
|---|
Score = 1887 bits (4887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1644 (60%), Positives = 1222/1644 (74%), Gaps = 79/1644 (4%)
Query: 10 GSQPSGGGTKICAATSAVVEECS-VAVSGVGFGAESSVGAQKTDKDPKQIARKYQLELCK 68
G +G + AATS + E+ S +++SG +S V QK +KDP++IARKYQ++LCK
Sbjct: 4 GDFENGTESPPSAATSPITEQLSALSLSG---DIDSPVSVQKPEKDPRKIARKYQMDLCK 60
Query: 69 KAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES 128
KA+EEN++VYLGTGCGKTHIAVLLIYE+ LIRKPQKSIC+FLAPTVALVQQQAKVIE+S
Sbjct: 61 KALEENVVVYLGTGCGKTHIAVLLIYEMGQLIRKPQKSICVFLAPTVALVQQQAKVIEDS 120
Query: 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDEC 188
I FKV T+CG SK LKSH DWEKE++QYEVLVM PQILL+ L H +I++E IALLIFDEC
Sbjct: 121 IDFKVGTYCGKSKHLKSHEDWEKEMEQYEVLVMTPQILLHNLSHCYIRIEFIALLIFDEC 180
Query: 189 HHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLD 248
H+AQV+S+HPYA+IMK FYKPD++K+PRIFGMTASP+ GKGA+ + LE LL
Sbjct: 181 HYAQVESDHPYAEIMKIFYKPDVVKLPRIFGMTASPISGKGAT--------VEGLETLLR 232
Query: 249 AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKL 308
+KVYSVED ++LE FV+SP V VY YGP + +Y S++L EIK Q + L +K
Sbjct: 233 SKVYSVEDKDELEQFVASPKVNVYYYGPGTACLTKAY---SQKLEEIKH-QCVMVLHKKA 288
Query: 309 HDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368
DH +LRNT K L RLH + F LENLGV GAL AS ILL GD R++++EA+ N DD
Sbjct: 289 VDHSTLRNTKKMLKRLHGHLIFSLENLGVFGALQASCILLKGDHYERHQMVEADVNASDD 348
Query: 369 SLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKC 427
SLC R+ SQ + VF + C +DG+ DL+ +EVLKEP+FSKKLLRLIGILS F +Q MKC
Sbjct: 349 SLCDRYLSQVATVFTSGCAKDGMNPDLTRVEVLKEPYFSKKLLRLIGILSNFGVQPDMKC 408
Query: 428 IVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNL 487
I+FVNRIVTAR+LSY+LQ+LK L+SW+C FLVGV++GLKSMSR IL KFRSGELNL
Sbjct: 409 IIFVNRIVTARSLSYMLQHLKVLSSWKCGFLVGVHSGLKSMSRKNTNIILNKFRSGELNL 468
Query: 488 LVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLI 547
LVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMP+SEYAFLVDS NQREL+LI
Sbjct: 469 LVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPKSEYAFLVDSDNQRELNLI 528
Query: 548 KNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDE 607
++FS+ E RMN EI R S A +E IYKVD +GA IS+ +SLLH YCSKLP DE
Sbjct: 529 EHFSRNEARMNDEISSRKSCTAVIDFQENIYKVDMTGATISSASSISLLHHYCSKLPRDE 588
Query: 608 FFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGA 667
FF PKP+F+YFDD+ GTIC ++LP+NAP+HQIV PQSS+EAAKKDACL+A + LH+LGA
Sbjct: 589 FFCPKPQFFYFDDIDGTICKLVLPSNAPMHQIVSAPQSSIEAAKKDACLRACKSLHELGA 648
Query: 668 LNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNF 727
L DYLLP D A ED +F + + E +R ELHEM+VPA ++SWT+++ PV LN
Sbjct: 649 LTDYLLP--DQADEDLIHVFLTQKAQMD-EDAREELHEMIVPAAFKESWTETESPVCLNS 705
Query: 728 YFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG-------- 779
Y++ F P P DR+Y++FGLF+K+ LP EAE +K+DL+LARGRSV T+L+PSG
Sbjct: 706 YYINFSPCPIDRVYKKFGLFLKAPLPQEAERMKLDLNLARGRSVETELIPSGATNFENNE 765
Query: 780 IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIF---HKNSVDWK 836
+ A++FQ MFLK+ILDRSE SEFV L K+DY +S+S + YLLLPV +K SVDW+
Sbjct: 766 VQLAEKFQRMFLKIILDRSEXISEFVSLEKEDYVDSASKS-YLLLPVNLCGHNKISVDWE 824
Query: 837 IIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNI 896
++RRCLSSP+FGT + + + LQL NG S DV NSLVY K+ F+ ++++
Sbjct: 825 LVRRCLSSPIFGTKVYAGNSEISKFDEQLQLANGSKSVHDVANSLVYVPCKETFFFISDV 884
Query: 897 VFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSES 956
V E N YS YK DS +HV+H ++GI L +P+QPL++AK LF L NLL RK SE
Sbjct: 885 VKESNAYSIYK--DSKNHVEHYYDTFGIRLSYPEQPLIKAKQLFCLDNLL--RKKGYSEL 940
Query: 957 HELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEG 1016
+ EE+F +LP E+CQLKIIGFSKDIGSSLSLLPSIMHRLE+LLVAIELK LSASFPEG
Sbjct: 941 RDKEEHFVELPAEICQLKIIGFSKDIGSSLSLLPSIMHRLESLLVAIELKGCLSASFPEG 1000
Query: 1017 AEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSN 1076
EV+ + +L+ALTTEKC E FSLERLE+LGDAFLK+AVGRH+FL ++ DEG+LTRRRSN
Sbjct: 1001 REVTIDHVLEALTTEKCNEPFSLERLEVLGDAFLKFAVGRHVFLTYNAFDEGQLTRRRSN 1060
Query: 1077 AVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDD 1136
VNNS L +A RNNLQ +IRDQ FDP F+A+GR CP IC+K+TE++IH Q G D
Sbjct: 1061 IVNNSYLYTIAVRNNLQAFIRDQSFDPYHFYAVGRPCPVICNKQTEKSIHGQC-GSVTDG 1119
Query: 1137 LNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNI 1196
EVRCSK H WL KKTIAD+VEALVGAF+ DSGFKAA AFLKWIGI +FE SQV +I
Sbjct: 1120 AKTEVRCSKCHQWLRKKTIADIVEALVGAFVVDSGFKAAIAFLKWIGIYTDFEESQVKSI 1179
Query: 1197 CISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQRLEFLGDAV 1255
C +SK F+PL+ +D+ +E LLG+ F+H+GLL+QAF+HPS+N GGCYQRLEFLGDAV
Sbjct: 1180 CAASKVFMPLADEIDIQAIENLLGYTFVHKGLLIQAFIHPSYNNHGGGCYQRLEFLGDAV 1239
Query: 1256 LDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINN 1315
LDYLITSYLYSVYPKLKPGQLTDLRS+ VNN FA VAV QSF+ ++ DS+ L E+I
Sbjct: 1240 LDYLITSYLYSVYPKLKPGQLTDLRSVSVNNTTFAVVAVHQSFHSHILCDSSGLRESITR 1299
Query: 1316 YVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF 1375
YV+++ P S + + E P CPK LGDLVES +GAILLD+GF+LN W+IMLSFL P++ F
Sbjct: 1300 YVNFIGRPDSMKRLSEEPSCPKALGDLVESCMGAILLDTGFDLNXAWRIMLSFLKPVMSF 1359
Query: 1376 SNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEA 1435
+ LQLNP REL ELC SY L+F + KK K+L EAKV G ++V +A A N+++K A
Sbjct: 1360 TRLQLNPKRELHELCQSYGWHLKFLASKKDSKYLVEAKVNG--ENVSEAASALNINKKAA 1417
Query: 1436 IRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLK 1495
R+A+QQ+ S LKA GY K+KSLE ++K++ K EA+LIGYDE P V+ A N EK +
Sbjct: 1418 ARMAAQQVHSSLKAQGYRRKSKSLEQVVKTAKKMEAKLIGYDEIPC-VLTAKCNDVEKNE 1476
Query: 1496 ISE-----------------------------PQGGSSCD---------IGSPSLTTGGL 1517
SE P+ C+ S S TGG
Sbjct: 1477 ASESDRDLKVFPISEELARNCNFKLKACEKVGPKAAVQCNSEQTIMPNGSNSDSKATGGA 1536
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
N SA+S L+E+CAANCWKPP F+CCKE G SHLK FTFRV+VEIE ++IE G P+A
Sbjct: 1537 INGSAKSILHEVCAANCWKPPRFECCKETGPSHLKEFTFRVVVEIEETSRVIESCGAPRA 1596
Query: 1578 KKKGAAEHAAEGMLWCLEREGYLY 1601
KKK AAE AAEG LW L+ EGY++
Sbjct: 1597 KKKDAAEDAAEGALWFLKHEGYMF 1620
|
Source: Nicotiana attenuata Species: Nicotiana attenuata Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1758 bits (4553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 906/1595 (56%), Positives = 1137/1595 (71%), Gaps = 51/1595 (3%)
Query: 48 AQKTDKDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI 107
+ K +KDP++IAR+YQ+ELCKKAMEENIIVYLGTGCGKTHIAV++IYEL HL+ P+KS+
Sbjct: 108 SSKMEKDPRKIARRYQVELCKKAMEENIIVYLGTGCGKTHIAVMVIYELGHLVLSPKKSV 167
Query: 108 CIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL 167
CIFLAPTVALV+QQAKVI +S+ FKV CGG + +KSH +WE+EI + EVLVM PQILL
Sbjct: 168 CIFLAPTVALVEQQAKVIADSVNFKVAVHCGGKRIVKSHSEWEREISENEVLVMTPQILL 227
Query: 168 YCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVG 227
+ L H FI+ME I+LLIFDECHHAQ +SNHPYA+IMK FYK + ++ PRIFGMTASPVVG
Sbjct: 228 HNLQHCFIRMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVG 287
Query: 228 KGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287
KG+ NL KSINSLENLLDAKVYSVE L+ FVSSP+V+VY Y I+D S S +
Sbjct: 288 KGSFQSENLSKSINSLENLLDAKVYSVESNVQLDGFVSSPIVKVYYYQSAISDASQSTIR 347
Query: 288 CSEQLAEIKREQYIS-ALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYI 346
L +IK+ S L H Q+L N + L + HD++ + L NLG+ GA+ A+ I
Sbjct: 348 YENMLEDIKQRCLTSIKLQIDTHQTQTLLNMKRLLKKTHDNLIYSLVNLGLWGAIQAAKI 407
Query: 347 LLSGDETMRNELIEAEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFF 405
L+ D E G +C + S A+EV ++ +D AS+L + LKEP F
Sbjct: 408 QLNSDVQE-----EPVGENPKSKICDTYLSLAAEVLSSGVAKDESASELLSLAALKEPLF 462
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
S+KL++LI ILS FRL+ HMKCI+FVNRIVTAR LS IL NL+ L SW+ FLVG+++GL
Sbjct: 463 SRKLVQLIEILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGL 522
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
KSMSR M++IL++F+S ELNLLVATKVGEEGLDIQTCCLVIR+DLPETV SFIQSRGRA
Sbjct: 523 KSMSRRGMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRA 582
Query: 526 RMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGA 585
RMPQSEYAFLVDSGN++E+DLI+NF EDRMN+EI RTS + +E +YKV +GA
Sbjct: 583 RMPQSEYAFLVDSGNEKEMDLIENFRVNEDRMNQEITSRTSEETCPILDEELYKVHETGA 642
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTICHIILPANAPIHQIVGTP 643
CIS G +SLL++YCS+LPHDEFF PKP+F + ++ GGTIC I LPANAPI +IV +
Sbjct: 643 CISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVNEFGGTICRITLPANAPISEIVSSL 702
Query: 644 QSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEG-SRGE 702
S EAAKKDACLKA+ +LH LG LND+LLP + EDE D D+ +GEG SRGE
Sbjct: 703 LPSTEAAKKDACLKAVYELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGE 762
Query: 703 LHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVD 762
L+EM+VP + +Q W S+ V L+ Y+++F+P PADR Y++FG F+KS LP EA+ + +D
Sbjct: 763 LYEMVVPVLFKQKWDSSRSCVNLHSYYIRFVPHPADRSYKKFGFFMKSPLPIEADTMDID 822
Query: 763 LHLARGRSVMTKLVPSGIMQ--------AQQFQEMFLKVILDRSEFNSEFVPLGKDDYCE 814
LHLA RSV K+ PSG+ + A+ FQE+ LKV+ +R E EFVPL D
Sbjct: 823 LHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEVALKVLFERGELIPEFVPLELQDSSR 882
Query: 815 SSSSTFYLLLPVIFHKN----SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNG 870
+S STFYLLLP+ H SVDW IR CLSSP+F TP V+ P+ L L NG
Sbjct: 883 TSKSTFYLLLPISLHDAESVISVDWVTIRSCLSSPIFKTPSVLVEDIVPPTGSYLNLANG 942
Query: 871 WSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPK 930
+ DV+NSLV+ TH K FY V +I + +NG+SP K+S + SH++++ YG+ LK+P
Sbjct: 943 CWNIDDVKNSLVFMTHNKQFYFVADICYGRNGFSPVKESSTKSHMENIYKLYGVELKYPG 1002
Query: 931 QPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLP 990
QPLLR KPL +RNLLHNR ++ E EL+EYF ++PPEL QLKI G SK+IGSSLSLLP
Sbjct: 1003 QPLLRVKPLCHVRNLLHNRMQKNLEPQELDEYFIEIPPELSQLKIKGLSKEIGSSLSLLP 1062
Query: 991 SIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFL 1050
SIMHR+ENLLVAIELKH++SAS PE AEVS +L+ALTTEKC ER SLERLE+LGDAFL
Sbjct: 1063 SIMHRVENLLVAIELKHVMSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFL 1122
Query: 1051 KYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALG 1110
K+AV RHLFL HD +DEGELTRRRS AVNNSNL +LA + NLQVYIRDQ DP QFFA G
Sbjct: 1123 KFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNLCRLAIKRNLQVYIRDQALDPTQFFAFG 1182
Query: 1111 RRCPRICSKETERTIHSQYDGRAPDDL--NAEVRCSKGHHWLHKKTIADVVEALVGAFID 1168
C C + T +HS R P L N+E+RCSKGHHWL+KKTIADVVEALVGAF+
Sbjct: 1183 HPCRVTCDEVTSEEVHSL--NRVPGLLESNSEIRCSKGHHWLYKKTIADVVEALVGAFLV 1240
Query: 1169 DSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGL 1228
DSGFK A FL WIG+ V+FE+ QV + CI+S+ ++PL+ ++ LE L + FLH+GL
Sbjct: 1241 DSGFKGAVKFLSWIGVNVDFESLQVQDACIASRRYMPLTTRNNLEALENQLDYNFLHKGL 1300
Query: 1229 LLQAFVHPSFNRL-GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287
L+QAF+HPS+NR GGCYQRLEFLGDAVLDYL+TSY ++V+PKLKPGQLTDLRS+ VNN+
Sbjct: 1301 LVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNK 1360
Query: 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSL 1347
A ANVAV S +FL +S L E I +Y ++ EGPRCPKVLGDLVES L
Sbjct: 1361 ALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGPSEGPRCPKVLGDLVESCL 1420
Query: 1348 GAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGK 1407
GA+ LD GFNLN VW +MLSFLDP+ SNLQ++PI+EL+ELC SY D + + KK G
Sbjct: 1421 GALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGG 1480
Query: 1408 FLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSP 1467
F E KVT K + +SA N ++E+ + A+Q + + LKA + + LE +LK+S
Sbjct: 1481 FSVELKVTKKGCCLTVSATGRN--KRESTKKAAQLMITSLKAHEQITTSHPLEDVLKNSN 1538
Query: 1468 KSEARLIGYDETPINVVAADDNVFEKLKISE------------------PQGGSSCDIGS 1509
+EA+LIGY+E PI+VV E LKI E PQ S +
Sbjct: 1539 LNEAKLIGYNEDPIDVVNLVGLDVENLKIQENLGENSEISSSYVIRRGLPQAPSKTEDRL 1598
Query: 1510 PSLT---TGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-AP 1565
P T G +++A+S L+E C ANCWKPP F+CC+EEG HLK F ++VI+E+E AP
Sbjct: 1599 PQKTIIEAGRPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFFYKVILEVEDAP 1658
Query: 1566 EKIIECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
+EC GE +A KKGAAEHAA+ +WCL+ G+L
Sbjct: 1659 NMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1693
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1601 | ||||||
| TAIR|locus:2149259 | 1702 | DCL4 "dicer-like 4" [Arabidops | 0.921 | 0.866 | 0.565 | 0.0 | |
| UNIPROTKB|A7LFZ6 | 1657 | DCL4 "Endoribonuclease Dicer h | 0.781 | 0.754 | 0.506 | 0.0 | |
| TAIR|locus:2097705 | 1388 | DCL2 "dicer-like 2" [Arabidops | 0.630 | 0.727 | 0.326 | 4.6e-198 | |
| UNIPROTKB|Q8LMR2 | 1883 | DCL1 "Endoribonuclease Dicer h | 0.329 | 0.280 | 0.367 | 5.2e-150 | |
| MGI|MGI:2177178 | 1916 | Dicer1 "dicer 1, ribonuclease | 0.126 | 0.105 | 0.382 | 4.7e-97 | |
| UNIPROTKB|A0MQH0 | 1917 | DICER1 "Endoribonuclease Dicer | 0.123 | 0.103 | 0.381 | 1.1e-95 | |
| ZFIN|ZDB-GENE-030131-3445 | 1865 | dicer1 "Dicer1, Dcr-1 homolog | 0.125 | 0.107 | 0.385 | 2.9e-95 | |
| UNIPROTKB|E9PU15 | 1908 | Dicer1 "Protein Dicer1" [Rattu | 0.123 | 0.103 | 0.381 | 3e-95 | |
| UNIPROTKB|Q9UPY3 | 1922 | DICER1 "Endoribonuclease Dicer | 0.123 | 0.103 | 0.386 | 3.6e-95 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.123 | 0.103 | 0.381 | 5.5e-94 |
| TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4176 (1475.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 849/1502 (56%), Positives = 1061/1502 (70%)
Query: 24 TSXXXXXXXXXXXXXXFGAESSVG-AQKTDKDPKQIARKYQLELCKKAMEENIIVYLGTG 82
TS F A + + K +KDP++IAR+YQ+ELCKKA EEN+IVYLGTG
Sbjct: 88 TSSSSVSSFSSSSSSLFSAAGTDDPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTG 147
Query: 83 CGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKR 142
CGKTHIAV+LIYEL HL+ P+KS+CIFLAPTVALV+QQAKVI +S+ FKV CGG +
Sbjct: 148 CGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRI 207
Query: 143 LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKI 202
+KSH +WE+EI EVLVM PQILL+ L H FIKME I+LLIFDECHHAQ +SNHPYA+I
Sbjct: 208 VKSHSEWEREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEI 267
Query: 203 MKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLES 262
MK FYK + ++ PRIFGMTASPVVGKG+ NL KSINSLENLL+AKVYSVE L+
Sbjct: 268 MKVFYKSESLQRPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDG 327
Query: 263 FVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISA-LSRKLHDHQSLRNTTKQL 321
FVSSP+V+VY Y ++D S S + L +IK+ S L H Q+L + + L
Sbjct: 328 FVSSPLVKVYYYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLL 387
Query: 322 NRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC-RFASQASEV 380
R HD++ + L NLG+ GA+ A+ I L+ D +++E + G +C + S A+E
Sbjct: 388 KRSHDNLIYTLLNLGLWGAIQAAKIQLNSDHNVQDEPV---GKNPKSKICDTYLSMAAEA 444
Query: 381 FAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARAL 440
++ +D ASDL + LKEP FS+KL++LI ILS FRL+ HMKCI+FVNRIVTAR L
Sbjct: 445 LSSGVAKDENASDLLSLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTL 504
Query: 441 SYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDI 500
S IL NL+ L SW+ FLVG+++GLKSMSR +M++IL++F+S ELNLLVATKVGEEGLDI
Sbjct: 505 SCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDI 564
Query: 501 QTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNRE 560
QTCCLVIR+DLPETV SFIQSRGRARMPQSEYAFLVDSGN++E+DLI+NF EDRMN E
Sbjct: 565 QTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLE 624
Query: 561 IMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--F 618
I R+S + +E +YKV +GACIS G +SLL++YCS+LPHDEFF PKP+F +
Sbjct: 625 ITYRSSEETCPRLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPV 684
Query: 619 DDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDN 678
D+ GGTIC I LPANAPI +I + S EAAKKDACLKA+ +LH LG LND+LLP +
Sbjct: 685 DEFGGTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKD 744
Query: 679 ATEDEPMLFXXXXXXXXXXX-XXXXLHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPA 737
EDE L+EM VP + +Q W S V L+ Y++ F+P PA
Sbjct: 745 EIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPA 804
Query: 738 DRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQ--------AQQFQEM 789
DRIY++FG F+KS LP EAE + +DLHLA RSV K+ PSG+ + A+ FQE+
Sbjct: 805 DRIYKKFGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEI 864
Query: 790 FLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN----SVDWKIIRRCLSSP 845
LKV+ +R E +FVPL D +S STFYLLLP+ H SVDW IR CLSSP
Sbjct: 865 ALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSP 924
Query: 846 VFGTPGGSVDRKSLPSHGPLQLHNG-WSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS 904
+F TP V+ PS L+L NG W+ + DV+NSLV+ T+ K FY V +I +NG+S
Sbjct: 925 IFKTPSVLVEDIFPPSGSHLKLANGCWNID-DVKNSLVFTTYSKQFYFVADICHGRNGFS 983
Query: 905 PYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFD 964
P K+S + SHV+ + YG+ LKHP QPLLR KPL +RNLLHNR + E EL+EYF
Sbjct: 984 PVKESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQELDEYFI 1043
Query: 965 DLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEML 1024
++PPEL LKI G SKDIGSSLSLLPSIMHR+ENLLVAIELKH+LSAS PE AEVS +
Sbjct: 1044 EIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRV 1103
Query: 1025 LKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLL 1084
L+ALTTEKC ER SLERLE+LGDAFLK+AV RHLFL HD++DEGELTRRRSN VNNSNL
Sbjct: 1104 LEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLC 1163
Query: 1085 KLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHS-QYDGRAPDDLNAEVRC 1143
+LA + NLQVYIRDQ DP QFFA G C C + + +HS D + E+RC
Sbjct: 1164 RLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRC 1223
Query: 1144 SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSF 1203
SKGHHWL+KKTIADVVEALVGAF+ DSGFK A FLKWIG+ V+FE+ QV + CI+S+ +
Sbjct: 1224 SKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRY 1283
Query: 1204 LPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG-CYQRLEFLGDAVLDYLITS 1262
LPL+ ++ TLE L ++FLH+GLL+QAF+HPS+NR GG CYQRLEFLGDAVLDYL+TS
Sbjct: 1284 LPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTS 1343
Query: 1263 YLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT 1322
Y ++V+PKLKPGQLTDLRS+ VNN+A ANVAV S +FL +S L E I +Y +++ +
Sbjct: 1344 YFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLAS 1403
Query: 1323 PSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNP 1382
EGPRCPKVLGDLVES LGA+ LD GFNLN VW +MLSFLDP+ SNLQ++P
Sbjct: 1404 SPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISP 1463
Query: 1383 IRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQ 1442
I+EL+ELC SY D + + KK G F E KVT + +SA N ++E + A+Q
Sbjct: 1464 IKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLTVSATGRN--KREGTKKAAQL 1521
Query: 1443 LFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGG 1502
+ + LKA + + LE +LK+ ++EA+LIGY+E PI+VV E L I E GG
Sbjct: 1522 MITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGG 1581
Query: 1503 SS 1504
+S
Sbjct: 1582 NS 1583
|
|
| UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3018 (1067.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 651/1286 (50%), Positives = 848/1286 (65%)
Query: 228 KGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287
KG S + N K INSLE LL AKV SV D E+LES V+SP + VY YGPV N ++ + +
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPV-NHSNLTTI- 282
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYIL 347
C ++L +K + L L D + + K L RLH+++ FCL+ LG GAL A+
Sbjct: 283 CIKELDSLKLQSE-RMLRASLCDFKDSQKKLKSLWRLHENIIFCLQELGSFGALQAARTF 341
Query: 348 LS--GDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFF 405
LS GD+ R E ++ G+T + + A+ + + + DG + +E L+EPFF
Sbjct: 342 LSFDGDKLDRRE-VDLNGST-SSFAHHYLNGATSILSRN-KTDGSHAGSFDLEKLEEPFF 398
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
S K LI +LS + LQ++MKCIVFV RI ARA+S ILQNLK L W+C FLVG ++G
Sbjct: 399 SNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGS 458
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
K+MSRN M +I+++F SGE+NLLVAT VGEEGLDIQTCCLV+RFDLPETVASFIQSRGRA
Sbjct: 459 KNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRA 518
Query: 526 RMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGA 585
RM +S+Y L++ NQ L+ + E MN EI RTS+D F C EE IY+VD++GA
Sbjct: 519 RMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDMFDCLEENIYQVDNTGA 578
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQS 645
IS VSLLH YC LP D FF P P F+Y D + G IC +ILP NA Q G P
Sbjct: 579 SISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCL 638
Query: 646 SMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFXXXXXXXXXXXXXXXLHE 705
S + AK+DACLKA LHKLGAL D+LLP + + LHE
Sbjct: 639 SKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRKNKVSVTNNSSNNKVEDDSLREELHE 698
Query: 706 MLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHL 765
ML+PAVL+ S K L+FY+++FIP P DR Y+ FGLFV + LP EAE L+VDLHL
Sbjct: 699 MLIPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHL 758
Query: 766 ARGRSVMTKLVPSG--------IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSS 817
ARGR V + G +M A +FQEM LK++LDRSEF S V LG D E +S
Sbjct: 759 ARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDVTLEINS 818
Query: 818 STFYLLLPV----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSS 873
TFYLLLP+ + +DW + RCLSSP+F P S S+ L+L +G S
Sbjct: 819 -TFYLLLPIKQKCYGDRFMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFS 877
Query: 874 ESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPL 933
++DV S+V++ H F+ V I+ E N +S + +++ +H + I L HP+QPL
Sbjct: 878 KTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHS---GATYAEHFKERFRIELSHPEQPL 934
Query: 934 LRAKPLFRLRNLLHNRKLE--DSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPS 991
L+AK +F LRNLLHNR E +SE EL E+F +LPPELC LK+IGFSKD+GSSLSLLPS
Sbjct: 935 LKAKQIFNLRNLLHNRLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPS 994
Query: 992 IMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLK 1051
+M+RLENLLVAIELK ++ +SFPE +++SA +L+ALTTEKC ER SLER E+LGDAFLK
Sbjct: 995 LMYRLENLLVAIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLK 1054
Query: 1052 YAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGR 1111
Y VGRH F+ ++ +DEG+LTRRRS+ VNNS+L +L+ R LQVYIRDQ F+P QFFA GR
Sbjct: 1055 YVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPGR 1114
Query: 1112 RCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSG 1171
C +C+ + E +H Q D + N +RC++ HHWLH+K IADVVE+L+GAF+ + G
Sbjct: 1115 PCKVVCNTDVEVRLH-QMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGG 1173
Query: 1172 FKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQ 1231
FKAA AFL WIGI V+F + + SS L L D+A LE L+G++F H+GLLLQ
Sbjct: 1174 FKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQ 1233
Query: 1232 AFVHPSFNR-LGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFA 1290
AFVHPSF++ GGCYQRLEFLGDAVL+Y+ITSYLYS YP +KPGQ+TDLRS+ V N + A
Sbjct: 1234 AFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLA 1293
Query: 1291 NVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAI 1350
AV++S +K LI DSN L+ I+ + Y+ +S +++ E P CPK LGD+VES +GA+
Sbjct: 1294 YAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAV 1353
Query: 1351 LLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPS-LKKGGKFL 1409
LLDSGFNLN VWK+ML L P+L F+N+ NP+REL ELC + +L P +K G++
Sbjct: 1354 LLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYH 1413
Query: 1410 AEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKS 1469
+ +V K K I A N + K A + A+Q+ SKLK GY + KSLE IL + K
Sbjct: 1414 VKVEVNIKSK--IIICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLEEILIVARKR 1471
Query: 1470 EARLIGYDETPINVVAADDNVFEKLK 1495
E+ LIGY+E PI+V AD +V K+K
Sbjct: 1472 ESELIGYNEDPIDV-EADISV--KMK 1494
|
|
| TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 352/1078 (32%), Positives = 570/1078 (52%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P AR YQ+E +KA+++N IV+L TG GKT IA++L+ A+L RKP C+FL P
Sbjct: 20 PLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQ 79
Query: 115 VALVQQQAKVIEESIGFKVRTFCGG-SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
V LV QQA+ ++ KV + G W++E+D+YEVLVM P ILL L H
Sbjct: 80 VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 139
Query: 174 FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI----MKVPRIFGMTASPVVGKG 229
F+ + +I +LI DECHHA K HPYA IM++FY ++ VPRIFGMTAS V KG
Sbjct: 140 FLSLSMIKVLIVDECHHAGGK--HPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG 197
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDAEDLESFV--SSPVVRVYQYGPVINDTSSSYVT 287
+ + K I+ LE L+++KVY+ E+ L FV S+P + YQ+ + + +S V
Sbjct: 198 ENLDSYW-KKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVE 256
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYIL 347
E+L IK + L + ++ + K+L R+ ++ +CL++LG+ A A+ L
Sbjct: 257 KLERLT-IKHRLSLGTLDL---NSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSL 312
Query: 348 LSGDETMRNELIEAEGNTIDDSLCR-FASQASEVFAAICRRDGIASDLSCIEVLKEP-FF 405
+ + + + E N +L + F S AS+ F A + G+ ++ I E
Sbjct: 313 SA---SQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQ-GLNWSVANINGNAEAGLL 368
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQN-LKFLASWRCHFLVGVNAG 464
+ K + LI L + ++++CI+FV+R++TA L +L L +W+ ++ G N+G
Sbjct: 369 TLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSG 428
Query: 465 LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
L++ +R I+E FR G +N++VAT + EEGLD+Q+C LVIRFD + SFIQSRGR
Sbjct: 429 LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 488
Query: 525 ARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTC---SEERIYKVD 581
ARM S+Y +V+SG+ + + RM E +D + S+E +++V+
Sbjct: 489 ARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDSDEPLFRVE 548
Query: 582 SSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVG 641
S+GA ++ VSL++ YCS+LP DE+F P P+F D G C + LP + P+ ++
Sbjct: 549 STGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS--CTLYLPKSCPVKEVKA 606
Query: 642 TPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFXXXXXXXXXXXXXX 701
+++ + K+ CLKA LHK+GAL+D+L+P M+
Sbjct: 607 --EANNKVLKQAVCLKACIQLHKVGALSDHLVPD---------MVVAETVSQKLEKIQYN 655
Query: 702 XLHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPD-PADRIYREFGLFVKSLLPGEAEHLK 760
P L ++ +Q +FY ++ P+ P + + L + +L + +
Sbjct: 656 TEQPCYFPPELVSQFS-AQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTS 714
Query: 761 VDLHLARGRSVMT-------KLVPSGIMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYC 813
L RG +T L ++ ++FQ +V+LD S N G +
Sbjct: 715 FRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGL--HL 772
Query: 814 ESSSSTFYLLLPVIF-HKNS-VDWKIIRRCLSSPVFGTPGGSVDR-KSLPSHGPLQ-LH- 868
+ YLL+P H+ S +DW++IR V T +++ ++ ++G + LH
Sbjct: 773 RDGVALDYLLVPSTHSHETSLIDWEVIRS-----VNLTSHEVLEKHENCSTNGASRILHT 827
Query: 869 -NGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDSDSSSHVDHLISSYGIH 925
+G V+N+LVY H + Y ++ NG S ++S +++++ +GI
Sbjct: 828 KDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQ 887
Query: 926 LKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSS 985
L +PLL + +F L + LH K + + H+ E F +LPPELC + + S D+ S
Sbjct: 888 LNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDRE--FVELPPELCHVILSPISVDMIYS 945
Query: 986 LSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEIL 1045
+ +PS+M R+E+LL+A LK S P+ + +L+A+TT+KC+++F LE LE L
Sbjct: 946 YTFIPSVMQRIESLLIAYNLKK----SIPK-VNIPTIKVLEAITTKKCEDQFHLESLETL 1000
Query: 1046 GDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDP 1103
GD+FLKYAV + LF T EG L+ ++ ++N L + + LQ +IRD+ F+P
Sbjct: 1001 GDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEP 1058
|
|
| UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 213/579 (36%), Positives = 309/579 (53%)
Query: 900 KNGY-SPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-----HNRKLED 953
K GY P + SS+ D+ YG+ L + KQPL+RA+ + +NLL H+ E
Sbjct: 1217 KEGYLGPL---EYSSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREG 1273
Query: 954 SESHELEE-YFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSAS 1012
S L++ Y+ LPPELC + + S G+ LPSIM R+E++L+A++LK ++
Sbjct: 1274 DFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQR--LPSIMRRVESMLLAVQLKDIID-- 1329
Query: 1013 FPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTR 1072
+P V A +L+ALT CQE ER E+LGDA+LK+ V R LFL + EG+LTR
Sbjct: 1330 YP----VPATKILEALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTR 1385
Query: 1073 RRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALG---------RRC-PRICSKE-T 1121
R V+N L + A LQ YI+ F P ++ A G R P I +E T
Sbjct: 1386 MRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEEST 1445
Query: 1122 ERTIHSQ-YDGRAPDDL--NAEVRC-SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATA 1177
+ + YD A D++ + E+ S + L KT+ADVVEAL+G + G AA
Sbjct: 1446 GCELQKESYDDYA-DNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANH 1504
Query: 1178 FLKWIGIQVEFEASQVTNICISSKSF-LPLSA--SLDMATLEILLGHQFLHRGLLLQAFV 1234
+KWIGI E + ++ K + +P S S++ TL+ +LG +F ++GLL++A
Sbjct: 1505 LMKWIGIHAELDPEEIP----PPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAIT 1560
Query: 1235 HPSFNRLG-GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVA 1293
H S G CYQRLEF+GDAVLD+LIT +L+ Y L PG+LTDLR+ VNN+ FA VA
Sbjct: 1561 HASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVA 1620
Query: 1294 VDQSFYKFLIFDSNVLSETINNYV----DYMITPSSTREVKEGPRCPKVLGDLVESSLGA 1349
V + L S+ L I +V + ++ P + PKVLGD+VES GA
Sbjct: 1621 VKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGA 1680
Query: 1350 ILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFL 1409
I LDSG++ + VWK+ L P++ L ++P+REL E C L++ + + G
Sbjct: 1681 IFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIAT 1740
Query: 1410 AEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448
E V G V A N +K A ++A++ LK
Sbjct: 1741 VEVFVDGVQIGV-----AQNPQKKMAQKLAARNALVVLK 1774
|
|
| MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 86/225 (38%), Positives = 126/225 (56%)
Query: 1214 TLEILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKL 1271
T E + ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY +
Sbjct: 1662 TFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1721
Query: 1272 KPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR---- 1327
PG LTDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1722 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDS 1781
Query: 1328 ---------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS- 1376
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS
Sbjct: 1782 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSA 1841
Query: 1377 NLQLNPIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
N+ +P+RELLE+ +F ++ GK +V GK K
Sbjct: 1842 NVPRSPVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1883
|
|
| UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 84/220 (38%), Positives = 124/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1668 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1727
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1728 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRS 1847
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1848 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1884
|
|
| ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 86/223 (38%), Positives = 125/223 (56%)
Query: 1216 EILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKP 1273
E + + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + P
Sbjct: 1613 ESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1672
Query: 1274 GQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR------ 1327
G LTDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1673 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1732
Query: 1328 -------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NL 1378
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+
Sbjct: 1733 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1792
Query: 1379 QLNPIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
+P+RELLE+ +F ++ GK +V GK K
Sbjct: 1793 PRSPVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1832
|
|
| UNIPROTKB|E9PU15 Dicer1 "Protein Dicer1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1659 INYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1718
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1719 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1778
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1779 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRS 1838
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1839 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1875
|
|
| UNIPROTKB|Q9UPY3 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 85/220 (38%), Positives = 125/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1673 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1732
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1733 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1792
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +
Sbjct: 1793 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRS 1852
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1853 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1889
|
|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 338 (124.0 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1672 INYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1731
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1732 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRS 1791
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1792 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1851
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1852 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1888
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A7LFZ6 | DCL4_ORYSJ | 3, ., 1, ., 2, 6, ., - | 0.5021 | 0.9562 | 0.9239 | yes | no |
| P84634 | DCL4_ARATH | 3, ., 1, ., 2, 6, ., - | 0.5684 | 0.9656 | 0.9083 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1601 | |||
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-42 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 3e-37 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 6e-33 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 4e-30 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 6e-29 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 7e-29 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-27 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 6e-27 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 3e-22 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 3e-22 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-20 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 8e-20 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 6e-18 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-17 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 3e-16 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 6e-16 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-15 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-15 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 4e-15 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 5e-15 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-14 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 3e-14 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 8e-14 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 4e-13 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 9e-13 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-12 | |
| cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 6e-11 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-10 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 1e-08 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 1e-08 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 1e-08 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-07 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 9e-07 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 1e-06 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 2e-06 | |
| smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding moti | 2e-06 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 6e-06 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 8e-06 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 8e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 2e-05 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 2e-05 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-05 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-05 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 4e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 4e-05 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-04 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 4e-04 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 5e-04 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 9e-04 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 0.001 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 0.002 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 0.002 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 0.002 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 1e-42
Identities = 143/532 (26%), Positives = 214/532 (40%), Gaps = 70/532 (13%)
Query: 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQL + KA+ +N +V L TG GKT IA ++I L K +FLAPT LV
Sbjct: 16 PRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVI--ANRLRWFGGKV--LFLAPTKPLV 71
Query: 119 QQQAKVIEESIGF---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
Q A+ + G ++ G + + W K+ +V V PQ++ L I
Sbjct: 72 LQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKK----KVFVATPQVVENDLKAGRI 127
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
++ ++LLIFDE H A N+ Y + K++ + K P I G+TASP G+
Sbjct: 128 DLDDVSLLIFDEAHRAV--GNYAYVFVAKEYLRSA--KNPLILGLTASP----GSD---- 175
Query: 236 LPKSI-NSLENLLDAKV-YSVEDAEDLESFVSS------PVVRVYQYGPVINDTSSSYVT 287
+ I +ENL KV E+ D+ +V V + + + +
Sbjct: 176 -LEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGAL----HA 343
+ L E+ + S +S+K D LR + + DS KF L V HA
Sbjct: 235 RLKPLKELGVIESSSPVSKK--DLLELRQIRLIMAKNEDSDKF--RLLSVLAEAIKLAHA 290
Query: 344 SYILLS-GDETMRNELI----EAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIE 398
+L + G L EA + A + + R
Sbjct: 291 LELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIR----------- 339
Query: 399 VLKEPFFSK-KLLRLIGIL-STFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
E KL +L IL + IVF TA I+ LK +
Sbjct: 340 -ADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAE---EIVNFLKKIGIKARV 395
Query: 457 FLVGVNA--GLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPET 514
+G + G K MS+ K I+++FR GE N+LVAT VGEEGLDI LVI + E
Sbjct: 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFY---EP 452
Query: 515 VAS---FIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
V S IQ +GR + ++ + R+ + ++E +M I
Sbjct: 453 VPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRG 504
|
Length = 542 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-37
Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
Query: 1228 LLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVN 1285
LLL+A HPS+ +RLEFLGDAVL+ ++T YL+ +P L G LT LRS LV+
Sbjct: 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVS 61
Query: 1286 NQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVES 1345
N+ A +A + K+L E G PK+L D+ E+
Sbjct: 62 NETLARLARELGLGKYLRLGKG-------------------EEKSGGRLRPKILADVFEA 102
Query: 1346 SLGAILLDSGFNLNTVWKIMLSFLDPILKFSNL 1378
+GAI LD GF K +L L P+++ +L
Sbjct: 103 LIGAIYLDGGF--EAARKFLLRLLGPLIEEISL 133
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 6e-33
Identities = 75/257 (29%), Positives = 107/257 (41%), Gaps = 52/257 (20%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSF---NRLGGCYQRLEFLGDAVLDYLITSYLYSV 1267
+ LE LG+ F + LL QA H S+ ++ +RLEFLGDAVL ++ YL+
Sbjct: 7 KLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKK 66
Query: 1268 YPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR 1327
YP L G+L+ LR+ LV+ ++ A +A + L DY+
Sbjct: 67 YPNLPEGELSKLRAALVSEESLAEIA------RELGLG------------DYLRLGKG-- 106
Query: 1328 EVKE-GPRCPKVLGDLVESSLGAILLDSGFNLNTVW--KIMLSFLDPILKFSNLQLNPIR 1384
E K G R +L D E+ +GAI LDSG + K+ L L+ I + +P
Sbjct: 107 EEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDAG-DQFKDPKT 165
Query: 1385 ELLELCNSYDLDLQFPSLKKGGKFLAE---AKVTGKDKD-VFISACATNL---------S 1431
L EL + G L E K G D F A S
Sbjct: 166 RLQELL------------QAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRS 213
Query: 1432 RKEAIRIASQQLFSKLK 1448
+KEA + A++Q KL
Sbjct: 214 KKEAEQAAAEQALKKLG 230
|
Length = 235 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 4e-30
Identities = 78/254 (30%), Positives = 116/254 (45%), Gaps = 44/254 (17%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSF-NRLGGC--YQRLEFLGDAVLDYLITSYLYSV 1267
D+ L+ LG+ F LL+QA H S+ N G +RLEFLGDAVL+ +++ YL+
Sbjct: 4 DLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKR 63
Query: 1268 YPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR 1327
+P L G L+ LR+ LV ++ A +A + ++L+ L +
Sbjct: 64 FPDLDEGDLSKLRAALVREESLAEIARELGLGEYLL-----LGKG--------------- 103
Query: 1328 EVKEGPRC-PKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK---FSNLQLNPI 1383
E K G R P +L D E+ +GAI LD G K +L +P ++ +L +
Sbjct: 104 EEKSGGRRRPSILADAFEALIGAIYLDQGL--EAARKFILRLFEPRIEEIDLGDLVKDYK 161
Query: 1384 RELLELCNSYDLDLQFPS---LKKGG-----KFLAEAKVTGKDKDVFISACATNLSRKEA 1435
L EL L L P +K+ G +F E V GK T S+KEA
Sbjct: 162 TRLQELLQGRGLPL--PEYELVKEEGPAHDKEFTVEVTVNGK-----ELGEGTGSSKKEA 214
Query: 1436 IRIASQQLFSKLKA 1449
+ A++Q KLK
Sbjct: 215 EQAAAKQALKKLKE 228
|
Length = 229 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-29
Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 1228 LLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287
LLL+A H S++ +RLEFLGDAVL+ ++T YLY YP L G L+ LRS LV+N+
Sbjct: 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNE 61
Query: 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRC-PKVLGDLVESS 1346
A +A +F+ E G R PK+L D+ E+
Sbjct: 62 TLARLAKKLGLGEFIR--------------------LGRGEAISGGRDKPKILADVFEAL 101
Query: 1347 LGAILLDSGFNLNTVWKIMLSFLDPILKF 1375
+GAI LDSG + + L P L
Sbjct: 102 IGAIYLDSGL--EAAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-29
Identities = 39/82 (47%), Positives = 54/82 (65%)
Query: 593 VSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKK 652
+ LL+RYC+ LP D F + +P+F GG +C +ILP N+P+ +IVG P S AK+
Sbjct: 2 IQLLNRYCATLPSDPFTSLRPEFSVEPVDGGYVCTVILPLNSPVREIVGKPMRSKRLAKQ 61
Query: 653 DACLKAIEDLHKLGALNDYLLP 674
A KA + LH+LG LND+LLP
Sbjct: 62 SAAFKACKKLHELGELNDHLLP 83
|
This domain is a divergent double stranded RNA-binding domain. It is found in members of the Dicer protein family which function in RNA interference, an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules. Length = 91 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 72/250 (28%), Positives = 108/250 (43%), Gaps = 47/250 (18%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSFNRLGGC----YQRLEFLGDAVLDYLITSYLYSVYPK 1270
LE LG++F ++ LL QA H S+ +RLEFLGDAVL ++ YL+ +P
Sbjct: 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPD 60
Query: 1271 LKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVK 1330
L G+L+ LR+ LV+ ++ A VA + KFL ++ E K
Sbjct: 61 LSEGELSKLRAALVSEESLAEVARELGLGKFL-----------------LLGKG---EEK 100
Query: 1331 EGPRC-PKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIR----E 1385
G R +L D E+ +GAI LDSG K +L L P + + + ++
Sbjct: 101 SGGRRRESILADAFEALIGAIYLDSGL--EAARKFILKLLIPRID-AIEKEETLKDYKTA 157
Query: 1386 LLELCN-------SYDL-DLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIR 1437
L E Y L + P K +F E V G+ + S+KEA +
Sbjct: 158 LQEWAQARGKPLPEYRLIKEEGPDHDK--EFTVEVSVNGE---PYGEGKGK--SKKEAEQ 210
Query: 1438 IASQQLFSKL 1447
A++ KL
Sbjct: 211 NAAKAALEKL 220
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-27
Identities = 52/161 (32%), Positives = 65/161 (40%), Gaps = 44/161 (27%)
Query: 1024 LLKALTTEKCQE---RFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNN 1080
LL+ALT RF+ ERLE LGDA L+ V +LF + EG+LTR RS V+N
Sbjct: 3 LLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSN 62
Query: 1081 SNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAE 1140
L +LA L Y+R +
Sbjct: 63 ETLARLARELGLGKYLRLGKGEE------------------------------------- 85
Query: 1141 VRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKW 1181
K L K +ADV EAL+GA D GF+AA FL
Sbjct: 86 ----KSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLR 122
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 3e-22
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 865 LQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSS---SHVDHLISS 921
L L +G D++ S+V A H FY V + + + N S + + ++ ++
Sbjct: 19 LHLADGSFCACDLKGSVVTAPHNGRFY-VISGILDLNANSSFPGKEGLGYATYAEYFKEK 77
Query: 922 YGIHLKHPKQPLLRAKPLFRLRNLLHNR--KLEDSESHELEEYFDDLPPELCQLKIIG 977
YGI L HP QPLL+ K +F L NLLHNR + +SE E + YF +LPPELC + +
Sbjct: 78 YGIVLNHPNQPLLKGKQIFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVIDLP 135
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 135 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-22
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 1246 QRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFD 1305
+RLEFLGDAVL+ ++ YLY +P L G+L LRS LV+N+A A +A K+L
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1306 SNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSG 1355
+ VK KVL D E+ +GA+ LD G
Sbjct: 61 EGDI-------------------VKRASVKDKVLADAFEALIGALYLDGG 91
|
Length = 91 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-20
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 60 RKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117
R YQ E + + ++I+ TG GKT A+L L L R + + L PT L
Sbjct: 10 RPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPA--LEALKRGKGGRV-LVLVPTREL 66
Query: 118 VQQQAKVIEE---SIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF 174
+Q A+ +++ S+G KV GG + + E + ++LV P LL L +
Sbjct: 67 AEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLES--GKTDILVTTPGRLLDLLENDK 124
Query: 175 IKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDIMKVPRIFGMTASP 224
+ + + L+I DE H K++K K ++ ++A+P
Sbjct: 125 LSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN-----VQLLLLSATP 170
|
Length = 201 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 8e-20
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 43/169 (25%)
Query: 1022 EMLLKALTTEKCQ-ERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNN 1080
+LL+ALT E ERLE LGDA L+ V +L+ + + EG+L+R RS V+N
Sbjct: 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSN 60
Query: 1081 SNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAE 1140
L +LA + L +IR +
Sbjct: 61 ETLARLAKKLGLGEFIRLGRGEA------------------------------------- 83
Query: 1141 VRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFL-KWIGIQVEF 1188
K +ADV EAL+GA DSG +AA F+ +G +++
Sbjct: 84 ----ISGGRDKPKILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 6e-18
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
AR YQ L A+++N +V L TG GKT IA+L+I A + K + + LAPT LV
Sbjct: 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVI---AERLHKKGGKV-LILAPTKPLV 71
Query: 119 QQQAKVIEESI---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
+Q A+ + + K+ F G K WEK +V+V PQ++ L I
Sbjct: 72 EQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKA----KVIVATPQVIENDLIAGRI 127
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
+E ++LLIFDE H A N+ Y I + +++ K P + G+TASP
Sbjct: 128 SLEDVSLLIFDEAHRAV--GNYAYVYIAERYHED--AKNPLVLGLTASP 172
|
Length = 773 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-17
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE--SIG 130
++++ TG GKT A+L I EL ++ Q + LAPT L Q A+ ++E G
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQ---VLVLAPTRELANQVAERLKELFGEG 57
Query: 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHH 190
KV GG+ + + + +++V P LL L + ++ + LLI DE H
Sbjct: 58 IKVGYLIGGTSIKQQE---KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR 114
Query: 191 AQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
+ + D ++ ++A+P
Sbjct: 115 LLNQGFGLLGLKILLKLPKD----RQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 3e-16
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
+S+ + ILE FR+G+ +LVAT V G+D+ LVI +DLP AS+IQ GRA
Sbjct: 16 GLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPASYIQRIGRA 74
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 6e-16
Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 16/185 (8%)
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
+KL L+ +L + + + IVFV L+ L+ F + L G
Sbjct: 258 EEKLELLLKLL---KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAA----LHG----- 305
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR- 524
+ + LEKF+ GEL +LVAT V GLDI VI +DLP ++ GR
Sbjct: 306 -DLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364
Query: 525 ARMPQSEYA--FLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDS 582
R + A F+ + ++L I+ + + + DA R +
Sbjct: 365 GRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEE 424
Query: 583 SGACI 587
S
Sbjct: 425 SDISD 429
|
Length = 513 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-15
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
I+ P +KL L+ +L + K ++F L+ +L+ + H
Sbjct: 2 IKQYVLPVEDEKLEALLELLKEHLKKGG-KVLIFCPSKKMLDELAELLRKPGIKVA-ALH 59
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
S+ + +L+ FR GE+ +LVAT V G+D+ +VI +DLP + +
Sbjct: 60 G---------DGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPS 110
Query: 517 SFIQSRGRA-RMPQSEYAFLV 536
S++Q GRA R Q A L+
Sbjct: 111 SYLQRIGRAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
Q + + ++++V TG GKT +L I L L+ K + LAPT L
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPI--LQALLPKKGGPQALVLAPTRELA 58
Query: 119 QQQAKVIEESIGF---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
+Q + +++ +V GG+ + K+ + ++LV P LL L +
Sbjct: 59 EQIYEELKKLFKILGLRVALLTGGTSLKEQA-RKLKK-GKADILVGTPGRLLDLLRRGKL 116
Query: 176 KM-ELIALLIFDECH 189
K+ + + LL+ DE H
Sbjct: 117 KLLKNLKLLVLDEAH 131
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-15
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 876 DVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSS--SHVDHLISSYGIHLKHPKQPL 933
D++ +V + Y + +I + S ++ SD S + V++ Y I ++ P QPL
Sbjct: 26 DLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKSDGSEITFVEYYKQKYNITIRDPNQPL 85
Query: 934 LRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIM 993
L ++P R N+ + LPPELC I G + + L+ SI
Sbjct: 86 LVSRPKRR-----RNQNGKGEPVL--------LPPELC--FITGLTDRMRKDFMLMKSIA 130
Query: 994 HRLENLLV 1001
R +
Sbjct: 131 DRTRLSPL 138
|
This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 138 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 5e-15
Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 42/131 (32%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGDA L+ V +L+ + EGEL R RS V+N L KLA + L Y+R+
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
D + + K +AD
Sbjct: 61 EGDIVK-----------------------------------------RASVKDKVLADAF 79
Query: 1160 EALVGA-FIDD 1169
EAL+GA ++D
Sbjct: 80 EALIGALYLDG 90
|
Length = 91 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 47/167 (28%)
Query: 1022 EMLLKALT-----TEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSN 1076
E+L +ALT E + + ERLE LGDA L V +LF + EGEL++ R+
Sbjct: 13 ELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAA 72
Query: 1077 AVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDD 1136
V+ +L ++A L ++ LG+
Sbjct: 73 LVSEESLAEVARELGLGKFLL-----------LGK------------------------- 96
Query: 1137 LNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAF-LKWI 1182
S G + +AD EAL+GA DSG +AA F LK +
Sbjct: 97 ---GEEKSGGRR--RESILADAFEALIGAIYLDSGLEAARKFILKLL 138
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 42/144 (29%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGDA L V +LF + + EGEL++ R+ V+ +L ++A L Y+R
Sbjct: 45 ERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELGLGDYLR-- 102
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
LG+ +E + +AD
Sbjct: 103 ---------LGK------GEEKSGGRRRE------------------------SILADAF 123
Query: 1160 EALVGAFIDDSGFKAATAF-LKWI 1182
EAL+GA DSG +AA F LK
Sbjct: 124 EALIGAIYLDSGLEAARKFILKLF 147
|
Length = 235 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 8e-14
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
+S+ + IL+KF +G++ +LVAT V E GLD+ LVI +DLP + AS+IQ GRA
Sbjct: 20 GLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78
|
Length = 82 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 1205 PLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQRLEFLGDAVLDYLITSY 1263
+ A+ + LE GH+F ++ L +A H S G Y+RLEFLGD VL +
Sbjct: 5 MVLAAATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEM 64
Query: 1264 LYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITP 1323
L+ +P G+L+ + LVN + A +A + + D + T
Sbjct: 65 LFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLH------------------DLIRTG 106
Query: 1324 SSTREVKEGPRCPKVLGDLVESSLGAILLDSG 1355
S +++ G R V D+VE+ + AI LD G
Sbjct: 107 SDVKKL-TGKRLLNVRADVVEALIAAIYLDGG 137
|
Length = 235 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 9e-13
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 46/146 (31%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGDA L+ V +LF +DEG+L++ R+ V +L ++A L Y+
Sbjct: 42 ERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLL-- 99
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTI-ADV 1158
LG+ E S G + +I AD
Sbjct: 100 ---------LGK---------------------------GE-EKSGGR---RRPSILADA 119
Query: 1159 VEALVGA-FIDDSGFKAATAF-LKWI 1182
EAL+GA ++ D G +AA F L+
Sbjct: 120 FEALIGAIYL-DQGLEAARKFILRLF 144
|
Length = 229 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-12
Identities = 62/288 (21%), Positives = 98/288 (34%), Gaps = 51/288 (17%)
Query: 60 RKYQ---LELCKKAMEEN--IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
R YQ L+ K ++ L TG GKT +A I EL K + L PT
Sbjct: 38 RPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPT 89
Query: 115 VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF 174
L+ Q A+ +++ + G EKE++ +V V Q L
Sbjct: 90 KELLDQWAEALKKFLLLNDEIGIYGGG--------EKELEPAKVTVATVQTLARRQLLDE 141
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
L+IFDE HH Y +I++ PR+ G+TA+P
Sbjct: 142 FLGNEFGLIIFDEVHHL---PAPSYRRILELLSAA----YPRL-GLTATPE--------R 185
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDL-ESFVSSPVVRVY----------QYGPVINDTSS 283
I L +L+ VY V E + E +++ +Y
Sbjct: 186 EDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRE 245
Query: 284 SYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFC 331
AE + + A RK+ ++R + R ++ F
Sbjct: 246 LLRARGTLRAENEARRIAIASERKI---AAVRGLLLKHARGDKTLIFA 290
|
Length = 442 |
| >gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 6e-11
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKG 1581
+S L EL P ++ +EEG H FT V V I GE +KK+
Sbjct: 2 PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG-----KITGEGEGSSKKE- 55
Query: 1582 AAEHAAEGMLWCL 1594
A ++AAE L L
Sbjct: 56 AKQNAAEAALRKL 68
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS---FIQSR 522
K MS+ IL+KFR+GE N+LV+T V EEGLDI + LVI + E V S IQ +
Sbjct: 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFY---EPVPSEIRSIQRK 461
Query: 523 GRA 525
GR
Sbjct: 462 GRT 464
|
Length = 773 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 60 RKYQLELCKKAMEE-NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E ++ +E+ ++ + TG GKT A LI LA +K +F+ P L+
Sbjct: 5 RPYQEEAIERLLEKKRGLIVMATGSGKTLTAAALIARLAKGKKK-----VLFVVPRKDLL 59
Query: 119 QQQAKVI 125
+QA VI
Sbjct: 60 -EQALVI 65
|
Length = 100 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-08
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 29/154 (18%)
Query: 1204 LPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSY 1263
+PLS LE L ++F + LL QA H S + +RLEFLGD+VL+ + +
Sbjct: 1 MPLSQ------LESRLRYEFRNAELLRQALTHRSHSATHN--ERLEFLGDSVLNCAVAAL 52
Query: 1264 LYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITP 1323
L+ + KL G L+ +R+ LV Q+ +A Q+ I + L E
Sbjct: 53 LFQRFGKLDEGDLSRVRANLVKQQSLYEIA--QALN---ISEGLRLGEG----------- 96
Query: 1324 SSTREVKEGP-RCPKVLGDLVESSLGAILLDSGF 1356
E++ G R P +L D E+ +GA+ LD GF
Sbjct: 97 ----ELRSGGFRRPSILADAFEAIIGAVFLDGGF 126
|
Length = 413 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYP 1269
+ ++ LE L ++F + LL QA H S + +RLEFLGD+VL+ + + L+ +
Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATHN--ERLEFLGDSVLNCAVAALLFQRFG 58
Query: 1270 KLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREV 1329
KL G L+ +R+ LV Q+ +A I D L E E+
Sbjct: 59 KLDEGDLSRVRANLVKQQSLYEIA-----QALNISDGLRLGEG---------------EL 98
Query: 1330 KEGP-RCPKVLGDLVESSLGAILLDSGFN-----LNTVWKIMLSFLDP 1371
+ G R P +L D E+ +GA+ LD GF + ++ +L +DP
Sbjct: 99 RSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDP 146
|
Length = 467 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIY-ELAHLIRKPQKSICIFLAPTVALVQQQAKVIE--ESI 129
EN+++ TG GKT IA+L I L K +++ P AL +++ + E +
Sbjct: 48 ENVLISAPTGSGKTLIALLAILSTLLEGGGK-----VVYIVPLKALAEEKYEEFSRLEEL 102
Query: 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECH 189
G +V G + + +Y+V+V P+ L R +E + L++ DE H
Sbjct: 103 GIRVGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156
|
Length = 766 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-07
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485
+ IVFV L+ L+ A C +L G M + +++ G +
Sbjct: 247 RSIVFVRTRERVHELAGWLRK----AGINCCYLEG------EMVQAKRNEAIKRLTDGRV 296
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
N+LVAT V G+DI VI FD+P + +++ GR R
Sbjct: 297 NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338
|
Length = 434 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 43/162 (26%), Positives = 60/162 (37%), Gaps = 43/162 (26%)
Query: 1021 AEMLLKALTTEKCQ--ERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAV 1078
E L +ALT + ++ + ERLE LGD L V LF EGEL+ R + V
Sbjct: 26 KERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLV 85
Query: 1079 NNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLN 1138
N +A L IR
Sbjct: 86 NAETCAAIADEIGLHDLIR---------------------------------------TG 106
Query: 1139 AEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLK 1180
++V+ G L+ + ADVVEAL+ A D G +AA F++
Sbjct: 107 SDVKKLTGKRLLNVR--ADVVEALIAAIYLDGGLEAARPFIQ 146
|
Length = 235 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCH-FLVGVNAGLKSMSRNAMKSILEKFR 481
+H ++F N A L++ L + ++ V+ G S+SR + E+ +
Sbjct: 252 KHRTTLIFTNTRSGAERLAFRL--------KKLGPDIIEVHHG--SLSRELRLEVEERLK 301
Query: 482 SGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
GEL +VAT E G+DI LVI+ P++V F+Q GRA
Sbjct: 302 EGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRA 345
|
Length = 814 |
| >gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKG 1581
+S L EL PP ++ KEEG H FT V V K GE + K
Sbjct: 1 PKSLLQELAQKRKL-PPEYELVKEEGPDHAPRFTVTVKVG----GKR---TGEGEGSSKK 52
Query: 1582 AAEH-AAEGML 1591
A+ AAE L
Sbjct: 53 EAKQRAAEAAL 63
|
Length = 67 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (120), Expect = 6e-06
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 42/161 (26%)
Query: 1020 SAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVN 1079
+AE+L +ALT + ERLE LGD+ L AV LF +DEG+L+R R+N V
Sbjct: 16 NAELLRQALT-HRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVK 74
Query: 1080 NSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNA 1139
+L ++A N+ +R + + G R P I
Sbjct: 75 QQSLYEIAQALNISDGLR---LGEGELRSGGFRRPSI----------------------- 108
Query: 1140 EVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLK 1180
+AD EA++GA D GF+AA +K
Sbjct: 109 ---------------LADAFEAIIGAVFLDGGFEAAQGVIK 134
|
Length = 467 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 8e-06
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 42/160 (26%)
Query: 1021 AEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNN 1080
AE+L +ALT + ERLE LGD+ L AV LF +DEG+L+R R+N V
Sbjct: 17 AELLRQALT-HRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQ 75
Query: 1081 SNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAE 1140
+L ++A N+ +R + + G R P I
Sbjct: 76 QSLYEIAQALNISEGLR---LGEGELRSGGFRRPSI------------------------ 108
Query: 1141 VRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLK 1180
+AD EA++GA D GF+AA +K
Sbjct: 109 --------------LADAFEAIIGAVFLDGGFEAAQGVIK 134
|
Length = 413 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-06
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 24/144 (16%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
+Q++ + E N++V GTG GKT +L I L HL+R P + + L PT AL
Sbjct: 72 YSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPI--LDHLLRDPS-ARALLLYPTNALA 128
Query: 119 QQQAKVIEE---SIGFKVR--TFCGGSKRLKSHCDWEKE---IDQYEVLVMIPQILLYCL 170
QA+ + E + KV + G + E+ + ++L+ P +L Y L
Sbjct: 129 NDQAERLRELISDLPGKVTFGRYTGDTPP------EERRAIIRNPPDILLTNPDMLHYLL 182
Query: 171 --YH---RFIKMELIALLIFDECH 189
H ++ L L+ DE H
Sbjct: 183 LRNHDAWLWLLRNL-KYLVVDELH 205
|
Length = 851 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485
K ++F + + A ++ FLA + G R A ILE+FR+G +
Sbjct: 285 KTLIFASDVEHAYEIA-----KLFLAPGIVEAITG---ETPKEEREA---ILERFRTGGI 333
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR----ARMPQSEYAFLVDS 538
+LV KV +EG+DI ++I + FIQ GR A + A
Sbjct: 334 KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSL 390
|
Length = 442 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 13/179 (7%)
Query: 372 RFASQASEVFAAICR-RDGIASDLSCIEVLKEPFFSKKL------LRLIGILSTFRLQQH 424
FA + + DG L + P L + L+ ++
Sbjct: 247 EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNG 306
Query: 425 MKCIVFVN-RIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG 483
++ +VF R + L L V+ + R + I +F+ G
Sbjct: 307 IQTLVFFRSRKQVELLYLSPRRRLVREGG---KLLDAVSTYRAGLHREERRRIEAEFKEG 363
Query: 484 ELNLLVATKVGEEGLDIQTCCLVIRFDLPE-TVASFIQSRGRA-RMPQSEYAFLVDSGN 540
EL ++AT E G+DI + VI + P +V SF Q GRA R Q +V +
Sbjct: 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422
|
Length = 851 |
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 23/94 (24%)
Query: 882 VYATHKKWFYLVTNIVFEKNGYSPYKDSDSS--SHVDHLISSYGIHLKHPKQPLLRAKPL 939
V T+ Y + I ++ S + D S ++ Y I LK+P PLL
Sbjct: 34 VETTYNNRTYRIDGITWDPTPNSTFPLKDGGEISVAEYFKEKYNITLKYPNLPLLVVGR- 92
Query: 940 FRLRNLLHNRKLEDSESHELEEYFDDLPPELCQL 973
+ ++ LPPELC +
Sbjct: 93 ------------KKKPNY--------LPPELCFI 106
|
This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 114 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 407 KKLLRLIGILSTFRLQQHMK--CIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAG 464
+K +L IL + +QH K +VFV+ + A L+ + + L + H G
Sbjct: 351 QKKQKLFDILKS---KQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIH-------G 400
Query: 465 LKSMS--RNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
KSM R MKS F GE+ ++VAT V G+D+ VI FD+P T+ +I
Sbjct: 401 EKSMKERREVMKS----FLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQI 456
Query: 523 GRA-RM 527
GRA RM
Sbjct: 457 GRASRM 462
|
Length = 518 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP + ++I GR+ R
Sbjct: 301 MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGR 360
Query: 527 MPQSEYA--FLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
+ A F+ ++ ++ ++++ + + M E+ D
Sbjct: 361 FGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVAD 399
|
Length = 401 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 403 PFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIV----TARALSYILQNLKFLASWRCHFL 458
P +K L+G+LS + + +VFVN AR L R +
Sbjct: 239 PADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLE------------RHGYR 283
Query: 459 VGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASF 518
VGV +G + + +S+L +F+ G+L +LVAT V GL I V +DLP +
Sbjct: 284 VGVLSG--DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDY 341
Query: 519 IQSRGR-ARM 527
+ GR AR+
Sbjct: 342 VHRIGRTARL 351
|
Length = 572 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQ---SRGRARMPQSEY 532
+L +F++G+ +++AT V GLD++ VI FD P + ++ GRA + Y
Sbjct: 419 VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASY 478
Query: 533 AFLVDSGNQRELDLIK 548
FL + DL+K
Sbjct: 479 TFLTPDKYRLARDLVK 494
|
Length = 545 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-04
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
M++ + LE+ + G L++L+AT V GLD++ LV+ +D+P S++ GR R
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 527 MPQSEYAFL-VDSGNQRELDLIKNFSK 552
++ A L V++ RE L++N +
Sbjct: 339 AGRAGRALLFVEN---RERRLLRNIER 362
|
Length = 629 |
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKG 1581
+S L ELC KPP ++ +EEG H FT V V K G +KK+
Sbjct: 1 PKSLLQELCQKKGPKPP-YEYVEEEGPPHSPTFTVTVTVN----GKKY-GTGTGSSKKE- 53
Query: 1582 AAEH-AAEGMLWCL 1594
A+ AAE L L
Sbjct: 54 -AKQLAAEKALQKL 66
|
Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66 |
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 890 FYLVTNIVFEKNGYSPYKDSDSS--SHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLH 947
Y + +I F+K S +K SD + + V++ Y I + QPLL ++P R
Sbjct: 41 TYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRRDPR--- 97
Query: 948 NRKLEDSESHELEEYFDDLPPELCQL 973
E E + L PELC L
Sbjct: 98 --------GGEKEPIY--LIPELCFL 113
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 117 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 9e-04
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 460 GVNAGLKSMSRNAMKSI--LEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS 517
G+NA S K I LE FR G++ +LVAT V G+ I VI F LPE
Sbjct: 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDD 418
Query: 518 FIQSRGR 524
++ GR
Sbjct: 419 YVHRIGR 425
|
Length = 475 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQS--- 530
ILE+F G+L++LVAT V GL I V +DLP+ ++ GR R S
Sbjct: 296 RILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS 355
Query: 531 ------EYAF 534
EYA
Sbjct: 356 ISLACEEYAL 365
|
Length = 423 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKTHIAVLL-IYELAHLIRKPQKSICIFLAPTVALVQQ 120
QL + +++ TG GKT A LL + + + + + LAPT L Q
Sbjct: 56 QLAAIPLILAGRDVLGQAQTGTGKTA-AFLLPLLQKILKSVERKYVSALILAPTRELAVQ 114
Query: 121 QAKVIE----ESIGFKVRTFCGGS------KRLKSHCDWEKEIDQYEVLVMIPQILLYCL 170
A+ + G +V GG + LK D ++V P LL +
Sbjct: 115 IAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVD---------IVVATPGRLLDLI 165
Query: 171 YHRFIKMELIALLIFDE 187
+ + + L+ DE
Sbjct: 166 KRGKLDLSGVETLVLDE 182
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKPQKS--ICIFLAPTVALVQQQAKVIE---ESIGFKVRT 135
TG GKT A LI L L P+K + LAPT L Q A+V + KV
Sbjct: 45 TGSGKT--AAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVV 102
Query: 136 FCGGS------KRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDEC 188
GG+ ++LK ++V P LL L + + + L+ DE
Sbjct: 103 IYGGTSIDKQIRKLKRGPH---------IVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
S+S+ + +SGEL +VAT E G+D+ LVI+ P +VAS +Q GRA
Sbjct: 310 SVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRA 368
|
Length = 1490 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1601 | |||
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 100.0 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.98 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.97 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.97 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.97 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.97 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.97 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.97 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.96 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.96 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.96 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.96 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.96 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.96 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.96 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.95 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.94 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.94 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.94 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.94 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.94 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.94 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.93 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.93 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.92 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.92 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.92 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.92 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.92 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.92 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.92 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.92 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.92 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.91 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.91 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.91 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.91 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.91 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.9 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.9 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.9 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.9 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.9 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.9 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.9 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.89 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.89 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.89 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.89 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.89 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.88 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.87 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.87 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.86 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.86 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.86 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.85 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.85 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.85 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.85 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.84 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.84 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.84 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.83 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.83 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.83 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.82 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.82 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.81 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.8 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.8 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 99.79 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.79 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.78 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.78 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.77 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.76 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.75 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.75 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.75 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.74 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.74 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.73 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.72 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.72 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.71 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.7 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.69 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.65 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.65 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.65 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.64 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.63 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.62 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.61 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.6 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.59 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.58 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 99.57 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.55 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.53 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.53 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.52 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.51 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.49 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.44 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.43 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.39 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.38 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.37 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 99.37 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.36 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 99.34 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.32 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.31 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.3 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.27 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.27 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.26 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.24 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.21 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.2 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.19 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.15 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.14 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.12 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.11 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 99.09 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.03 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.02 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 98.99 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.95 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.94 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.86 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.86 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.85 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 98.84 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 98.84 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.83 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.81 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.8 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.78 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.69 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.67 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.67 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.66 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.66 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.62 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.62 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.58 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 98.54 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 98.42 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.36 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.36 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.36 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.3 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.14 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.06 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.96 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.9 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 97.83 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.78 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 97.72 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.72 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.65 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.61 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.46 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.46 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.34 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.22 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.17 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.15 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.13 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.12 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.05 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 97.01 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.0 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.97 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 96.95 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.86 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 96.82 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.77 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.74 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.3 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 96.17 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.15 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.04 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.01 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.97 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 95.96 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.88 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.86 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 95.72 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.71 | |
| PLN03202 | 900 | protein argonaute; Provisional | 95.66 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 95.63 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 95.53 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.51 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.39 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 95.34 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 95.24 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.07 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.04 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 94.87 | |
| PRK06526 | 254 | transposase; Provisional | 94.66 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.5 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 94.07 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 93.87 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 93.87 | |
| PRK08181 | 269 | transposase; Validated | 93.87 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.76 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 93.63 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 93.58 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 93.58 | |
| PRK12377 | 248 | putative replication protein; Provisional | 93.54 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 93.5 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 93.36 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 93.17 | |
| KOG3792 | 816 | consensus Transcription factor NFAT, subunit NF90 | 93.0 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.97 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.8 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 92.73 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 92.11 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 92.11 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 91.95 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.79 | |
| PRK08727 | 233 | hypothetical protein; Validated | 91.78 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 91.68 | |
| PF14954 | 252 | LIX1: Limb expression 1 | 91.48 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.35 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 91.25 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 91.07 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 91.03 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 90.83 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 90.83 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 90.74 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 90.6 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 90.47 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 90.14 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 90.11 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 89.88 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 89.66 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 89.62 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 89.6 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 89.49 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 89.0 | |
| PRK08116 | 268 | hypothetical protein; Validated | 88.9 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 88.75 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 88.25 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 88.15 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 88.1 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 88.04 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.02 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 87.99 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 87.77 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 87.55 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 87.42 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 87.36 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 87.22 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 87.21 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 87.1 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 87.06 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 86.96 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 86.93 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 86.75 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 86.63 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 86.41 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 86.39 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 86.39 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 86.36 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 86.17 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 86.08 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 86.05 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 85.78 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 85.72 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 85.67 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 85.6 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 85.35 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 85.34 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 84.56 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 84.43 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 84.35 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 84.23 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 84.2 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 83.98 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 83.95 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 83.4 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 83.07 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 83.05 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 83.01 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 82.87 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 82.77 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 82.52 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 82.3 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 82.29 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 82.12 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 82.12 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 82.1 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 81.91 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 81.86 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 81.85 | |
| PF11469 | 120 | Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 | 81.85 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 81.82 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 81.79 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 81.73 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 81.71 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 81.64 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 81.53 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 81.48 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 81.47 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 81.25 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 81.23 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 81.14 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 81.12 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 81.12 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 81.07 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 81.02 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 80.61 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 80.53 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 80.37 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 80.37 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 80.18 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 80.15 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 80.08 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 80.04 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 80.03 |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=641.61 Aligned_cols=1152 Identities=25% Similarity=0.309 Sum_probs=726.2
Q ss_pred HcCCcEEEEeCCCC-cCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHH
Q 000380 128 SIGFKVRTFCGGSK-RLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 128 ~~~l~v~~~~G~~~-~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~ 206 (1601)
++..++...++... ..|....|.......++.++|+..+++.+..+++.+....++++||||+.. ...|++...|...
T Consensus 10 ~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (1606)
T KOG0701|consen 10 HTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLV-MDAHPRRHFMDLS 88 (1606)
T ss_pred ccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccc-cccCcchhhhhcc
Confidence 33444444444432 122222677777789999999999999999999999999999999999997 3557888888776
Q ss_pred cCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhh
Q 000380 207 YKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 286 (1601)
........|+++|+||.+.+.... .......+..++......+.+.++...+.+|...|.+.+.......
T Consensus 89 ~~~~~~s~pr~~~~~a~~~~~~~~--~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~-------- 158 (1606)
T KOG0701|consen 89 SSGPSFSVPRILGLTASLLNDKFW--LEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAE-------- 158 (1606)
T ss_pred cccCCCCcchhhhccCCCcCCCcc--hhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhh--------
Confidence 444335689999999999887654 2345566777888888888888888888889888877655431100
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhH----HHHHHHhh
Q 000380 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETM----RNELIEAE 362 (1601)
Q Consensus 287 ~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~----~~~l~~~~ 362 (1601)
+...+- .....+ ..+ ..+...-.-.+.........-..|+||........+..-... ...+...+
T Consensus 159 -~~~~~~-~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 227 (1606)
T KOG0701|consen 159 -YGPLLI-NKDKLI-CVF--------LIPDCIVITFQKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNPAELHYCE 227 (1606)
T ss_pred -hhhhhc-ccccee-EEe--------ccCcceeeeccccchhhhhhcccCcchhhHHHHHHHhhcceeecCCHHHhhhhh
Confidence 000000 000000 000 000000000000011122234567777655443322210000 00001111
Q ss_pred cCCCchHHHHHHH---HHHHHHHHHHhc-CCCCCccchhhhccC-----CCCCHHHHHHHHHHhhcccCCCceEEEEecc
Q 000380 363 GNTIDDSLCRFAS---QASEVFAAICRR-DGIASDLSCIEVLKE-----PFFSKKLLRLIGILSTFRLQQHMKCIVFVNR 433 (1601)
Q Consensus 363 ~~~~~~~~~~~l~---~~~~~l~~~~~~-~~~~~~~~~~~~l~~-----~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~ 433 (1601)
....+.. .++.. ...+.+...... .+..+-+...+.... ....+-+.. +.|.+. ....+||||+.
T Consensus 228 e~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k--~~l~~~---~~l~~i~~~~~ 301 (1606)
T KOG0701|consen 228 EVFSDSE-LRFLMSIPRLLERLRDSKHEYIHQFEVLRKYEPHDVFRLIHESVCPLVDK--EYLEKI---ETLSGIIFVDQ 301 (1606)
T ss_pred hhcCcHH-HHHHHhHHHHHHHhhhcchhhhcccceeeeecccccceeehhhcCchhhH--HHHHhh---hhhhheeeccc
Confidence 0000100 11110 111111110000 011111000000000 000000000 022222 23578999999
Q ss_pred hhhHHHHHHHHHhcccccccccceEEeccCCCC-----cCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEE
Q 000380 434 IVTARALSYILQNLKFLASWRCHFLVGVNAGLK-----SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIR 508 (1601)
Q Consensus 434 r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~-----~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~ 508 (1601)
+.++..+.+++.+... +.+.+++|..+... ......|.+++.+|+..++|+|++|++++||+|++.|+.|++
T Consensus 302 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~ 378 (1606)
T KOG0701|consen 302 RYTAYVLLELLREIFS---NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVL 378 (1606)
T ss_pred chHHHHHHHHHHHhhc---cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhhee
Confidence 9999999999988643 35566777544311 111234778999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhhcCCCCCCeEEEEEeCCCHhHHHHHHHHHHhHHHHHHHhhhcCCCccccccccceeeeCCCCcEEe
Q 000380 509 FDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACIS 588 (1601)
Q Consensus 509 fd~p~s~~~yiQr~GRAR~g~s~~vilv~~~~~~~~~~i~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~y~v~~tga~lt 588 (1601)
+|.|...+.|+|+.||+|.-.+.++++........... --+...++.....+.. ....|
T Consensus 379 ~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~-~s~~~~~~i~~~~l~~----------------~~~~~---- 437 (1606)
T KOG0701|consen 379 FDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKN-PSYAYTEQIPRPQLFL----------------RLDAN---- 437 (1606)
T ss_pred ccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcC-hhHhHHhhcccchhhc----------------ccccc----
Confidence 99999999999999999988888777765333221110 0000011111011100 00111
Q ss_pred cCchHHHHHHHhccCCCCCCCCCcceEEEEeCCCcEEEEEEcCCCCccceeecCCCCCHHHHHHHHHHHHHHHHHHcCcC
Q 000380 589 AGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGAL 668 (1601)
Q Consensus 589 ~~~ai~~l~~yc~~lp~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~pl~~~~g~~~~s~~~Ak~~aa~~a~~~L~~~g~l 668 (1601)
+++||+..-. .....+.-+|.||.++|.+. -..-+|.+||+.|++
T Consensus 438 -------v~~~~~~~e~-------------~~~~~~~~~v~~~~~~p~~~---------------~~~~~~~~l~~~~~~ 482 (1606)
T KOG0701|consen 438 -------VNKYCARAEL-------------LKHVPFLSTVVLPVNSPLKM---------------CIVGLCLKLHKIGEL 482 (1606)
T ss_pred -------hHHHHHHHHh-------------ccCCCcceeEEEecCchHHH---------------HHHHhHHHHHHhhhh
Confidence 7789985421 11233566889999988432 112299999999999
Q ss_pred CcCcCCCCCCCCCC--CCcccCCC-----CCCcCCCCCcccccccccccccccccccCCCCeEEEEEEEEe-ecCCccc-
Q 000380 669 NDYLLPQEDNATED--EPMLFSSD-----SDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYFMQF-IPDPADR- 739 (1601)
Q Consensus 669 ~~~l~p~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~w~~~~~~~~l~~~~~~~-~~~~~~~- 739 (1601)
|++++|.+++.... +......+ .....+.+.+++.|.+.++..++.+....+.++++|...... .|.|+.+
T Consensus 483 d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~n 562 (1606)
T KOG0701|consen 483 DDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEERN 562 (1606)
T ss_pred hhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhcc
Confidence 99999999874310 00010011 123345556888899888888888888888888887654432 2222111
Q ss_pred -----------ccccEEEeeccCCCCccccceeEEEecCCcE-EEEEEeech-hhHHHHHHHH--HHHHHhccccccccc
Q 000380 740 -----------IYREFGLFVKSLLPGEAEHLKVDLHLARGRS-VMTKLVPSG-IMQAQQFQEM--FLKVILDRSEFNSEF 804 (1601)
Q Consensus 740 -----------~~~~~~l~~~~~lp~~~~~~~~~l~~~~~~~-~~~~~~~~~-~~~~~~f~~~--~~~~~~~~~~~~~~~ 804 (1601)
...+|++++.+.+|..+ .++++...|.. +........ +.....++.. |....++ ++
T Consensus 563 ~~~r~~~~~~~~~~~~~~l~~~~i~~~~---~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~------~v 633 (1606)
T KOG0701|consen 563 FERRKLYPPEDLTYCFGILTAKLIPKIP---HFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFT------EV 633 (1606)
T ss_pred cccccccCchhhhhhhcccchhhhcccc---cccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchh------hh
Confidence 12468999999999876 57777777752 111111111 1111011100 0000000 11
Q ss_pred ccCCCCC--ccCCCCCcceEEeccCCC----CccccccccccccccCccCCCCCCcCcCCCCCCCCccccCCCCCccccc
Q 000380 805 VPLGKDD--YCESSSSTFYLLLPVIFH----KNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVE 878 (1601)
Q Consensus 805 ~~~~~~~--~~~~~~~~~y~~~p~~~~----~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1601)
+.+++.. +.+..+...+.++|.... ...|+|.+++.+.. |.+..+ .+..+.++- ...+...++.
T Consensus 634 ~~~~~~~~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~~iv~------~~~~~~---~~~~~~~~~-~~~f~~~~~~ 703 (1606)
T KOG0701|consen 634 LRLAKINLEFDPKTAELIETLLPLNVLADKRAIIIVRKFLEAIVA------PSDLMP---IPSKDEVRK-AKYFDGEDSQ 703 (1606)
T ss_pred hhhhccccccCCchhhHHHHhcccccccccchhhhHHHHHHHHhC------cccccC---CCChhhhhh-hhhcccccch
Confidence 1122111 233345566788886543 35577777765321 111111 122222221 3345667777
Q ss_pred CcEEEeccCC---eEEEEEeecCCCCCCCCCCCCCCCChhhhhhhhcCccccCCCCCeEEeeecccccccccCCccCCcc
Q 000380 879 NSLVYATHKK---WFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSE 955 (1601)
Q Consensus 879 ~~vV~~~~~~---~~y~v~~i~~d~~p~s~~~~~~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL~~~~~~~~~ 955 (1601)
+.+++ |++ .-|++..+.....|.|.||+..+.++..|+..+|+..+....||++.++....+.|++.++......
T Consensus 704 ~~~~~--~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~ 781 (1606)
T KOG0701|consen 704 DAVGM--YRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKG 781 (1606)
T ss_pred hhhhh--hhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhcccc
Confidence 77776 543 2358899999999999999999999999999999999999999999999999999998877643211
Q ss_pred c--------cccccccccccccccccccccccHhHhhhcccCchHHHHHHHHHHHHHHH-------------HHhcCCC-
Q 000380 956 S--------HELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK-------------HLLSASF- 1013 (1601)
Q Consensus 956 ~--------~~~~~~~~~L~PElc~~~~~~~~~~~~~~~~~lPsi~~r~~~~l~a~~l~-------------~~l~~~~- 1013 (1601)
. +.... ...+.-++ .+.|.+++.|+.+-++|.+++|++. .+...+ ..+..+|
T Consensus 782 ~~l~~~s~~~e~~~-~es~~~~~---~~h~~~~s~~~~~~~~p~~v~~v~~--tg~~~s~~ta~~li~~~~~~i~~~~f~ 855 (1606)
T KOG0701|consen 782 SALPNSSSETERLK-DESLEHSL---IIHPALASLWRRAVCLPEILYRVLL--TGALVSLSTAVDLIPHDFSSILSKSFE 855 (1606)
T ss_pred ceeecccchhhhhh-HHHhhccC---CCCcCcchhhhhhccCcchheeecc--ccceeeeecccchhhhhhhhccchhhc
Confidence 0 00000 00011111 1346778888888889988888743 111100 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 000380 1014 -------------------------------------------------------------------------------- 1013 (1601)
Q Consensus 1014 -------------------------------------------------------------------------------- 1013 (1601)
T Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~~~i~~ 935 (1606)
T KOG0701|consen 856 KEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQVLAKRESISL 935 (1606)
T ss_pred cccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhhhhhhhhhhhhhcccccccccccCccccchhhhhcccccc
Confidence
Q ss_pred ---C--------C-----------------C---------------------------ccC-------CHHHHHHHhCcc
Q 000380 1014 ---P--------E-----------------G---------------------------AEV-------SAEMLLKALTTE 1031 (1601)
Q Consensus 1014 ---~--------~-----------------~---------------------------~~~-------~~~lll~AlT~~ 1031 (1601)
| . + +.+ +..+|+||||++
T Consensus 936 a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~ 1015 (1606)
T KOG0701|consen 936 ATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPNKRSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTS 1015 (1606)
T ss_pred ccCcccccccccCCchhhhhhhhhcCccCCCCCCcccccccccccccccccccccceeccccccccccchhHHHHHhhcC
Confidence 0 0 0 001 137899999999
Q ss_pred cccCCCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCcccccccCCCCCccccCCC
Q 000380 1032 KCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGR 1111 (1601)
Q Consensus 1032 ~~~~~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~ 1111 (1601)
++.+.++|||||+|||++||++++.++|.+||+.+||+|+.+|+..++|.+|++.|+..||++|++.+.|.|..||.||.
T Consensus 1016 ~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~ 1095 (1606)
T KOG0701|consen 1016 SCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQ 1095 (1606)
T ss_pred ccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C-c-cccccchhh--hhhcccc-CCCCC----CCccc-ccccCC--CccccchhhHHHHHHHHhhccccccChHHHH---
Q 000380 1112 R-C-PRICSKETE--RTIHSQY-DGRAP----DDLNA-EVRCSK--GHHWLHKKTIADVVEALVGAFIDDSGFKAAT--- 1176 (1601)
Q Consensus 1112 ~-~-~~~~~~~~~--~~~~~~~-~~~~~----~~~~~-~~~~~~--~~~~~~~k~lAD~~EAliGA~~~~~g~~~a~--- 1176 (1601)
. . +..|..... ..++... +.... ..+.. ...+.. .+.+...|++||++|||+||+|+|+|+..+.
T Consensus 1096 ~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~ 1175 (1606)
T KOG0701|consen 1096 LDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETI 1175 (1606)
T ss_pred cccccccccccccccccccccchhhhhhHHHHhhhccCCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHH
Confidence 2 0 111111000 0000000 00000 00000 011212 2589999999999999999999999998888
Q ss_pred --HHHHHhCccccccchhhhhhccccCCCCCcchhhcHHHHHHHhCC--ccCCHHHHHHhhcCCCCCCC-CCCCchhhhh
Q 000380 1177 --AFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGH--QFLHRGLLLQAFVHPSFNRL-GGCYQRLEFL 1251 (1601)
Q Consensus 1177 --~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy--~F~~~~ll~~Alth~s~~~~-~~~yerLefL 1251 (1601)
.||+|.++..++...+....+..+...........+..+|..++| +|....|+.+|++|+|+... ..++||++|+
T Consensus 1176 ~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~ 1255 (1606)
T KOG0701|consen 1176 GDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFL 1255 (1606)
T ss_pred HHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhh
Confidence 899999998887765544433222111112223456789999999 99999999999999999876 6679999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhC--hHHHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccc
Q 000380 1252 GDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVN--NQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREV 1329 (1601)
Q Consensus 1252 GDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~--n~~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1329 (1601)
||++||++++++.+..+....++++++++++-+| |+.++..++...++.+++..+.-..+.|..+++.+.........
T Consensus 1256 ~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~ 1335 (1606)
T KOG0701|consen 1256 GDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGG 1335 (1606)
T ss_pred HHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999999999999 99999999999999999999888888999988876544322211
Q ss_pred c----CCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHH-----hhhhhhhcccCCCChhHHHHHHHhhc
Q 000380 1330 K----EGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLS-----FLDPILKFSNLQLNPIRELLELCNSY 1393 (1601)
Q Consensus 1330 ~----~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~-----~~~~~~~~~~~~~~p~~~L~e~~~~~ 1393 (1601)
. ...+.|+.++|+.|+++++.++|.+.++-.+|++... +..+.+.......+|.......|.+.
T Consensus 1336 ~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qr 1408 (1606)
T KOG0701|consen 1336 PSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQR 1408 (1606)
T ss_pred CCccccccccccccccccccccccchhHHHHHHHHHHhhhcccchhhhhhhcccccccccccccCccchhhhh
Confidence 1 1225689999999999999999999987778888777 55566555556667777766666554
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=454.29 Aligned_cols=464 Identities=27% Similarity=0.356 Sum_probs=307.2
Q ss_pred chhhhhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC---
Q 000380 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF--- 131 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l--- 131 (1601)
....+|.||..+...++.+|++|++|||.|||++|++.+.... +..++ ++|||+||++||.|+++.+++.+++
T Consensus 12 ~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l---~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRL---RWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred ccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHH---HhcCC-eEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 3567999999999999999999999999999999999985433 33334 7999999999999999999999986
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~ 211 (1601)
.+..++|......+...|.+ .+|+|+|||.+.|.+.++.+++.++.+|||||||++. |+++|..+++.+....
T Consensus 88 ~i~~ltGev~p~~R~~~w~~----~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAv--GnyAYv~Va~~y~~~~- 160 (542)
T COG1111 88 EIAALTGEVRPEEREELWAK----KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAV--GNYAYVFVAKEYLRSA- 160 (542)
T ss_pred heeeecCCCChHHHHHHHhh----CCEEEeccHHHHhHHhcCccChHHceEEEechhhhcc--CcchHHHHHHHHHHhc-
Confidence 57899999998888889986 8999999999999999999999999999999999996 9999999999987654
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCe-E-EeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAK-V-YSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~-~-~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
..|+||||||||.... ..+.++...|+-. + +..++..++..|+..-++..+... ++.....+.
T Consensus 161 -k~~~ilgLTASPGs~~---------ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~-----lp~e~~~ir 225 (542)
T COG1111 161 -KNPLILGLTASPGSDL---------EKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVD-----LPEEIKEIR 225 (542)
T ss_pred -cCceEEEEecCCCCCH---------HHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEecc-----CcHHHHHHH
Confidence 4699999999996553 3567777777643 2 335566788899888766655432 223333333
Q ss_pred HHHHHHHHHHHHHHhhhh--cccchhhhhHHHHHHHHhhhHH-------HHHHhhhhhHHHHHHHHHhcCchhHHHHHHH
Q 000380 290 EQLAEIKREQYISALSRK--LHDHQSLRNTTKQLNRLHDSMK-------FCLENLGVCGALHASYILLSGDETMRNELIE 360 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~-------~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~ 360 (1601)
+.+.++.+..+ ..|... ......+ ..+..+........ .+.+.++..... +.-.+ ..++++
T Consensus 226 ~~l~~~l~~~L-k~L~~~g~~~~~~~~-~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~------~kl~~--a~elle 295 (542)
T COG1111 226 DLLRDALKPRL-KPLKELGVIESSSPV-SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEA------IKLAH--ALELLE 295 (542)
T ss_pred HHHHHHHHHHH-HHHHHcCceeccCcc-cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHH------HHHHH--HHHHHH
Confidence 33333322222 111111 0000000 00000000000000 001111111110 00000 001111
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHh--cCCCCCccc-------hhhhccCCCCCHHHHHHHHHHhhc-ccCCCceEEEE
Q 000380 361 AEGNTIDDSLCRFASQASEVFAAICR--RDGIASDLS-------CIEVLKEPFFSKKLLRLIGILSTF-RLQQHMKCIVF 430 (1601)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~-------~~~~l~~~~~s~K~~~L~~lL~~~-~~~~~~k~IIF 430 (1601)
..|- ..+.+|+.+..+.-..... ......+.. .+.......-.||+..+.++++++ ....+.|+|||
T Consensus 296 tqGi---~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVF 372 (542)
T COG1111 296 TQGI---RPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVF 372 (542)
T ss_pred hhCh---HHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEE
Confidence 1110 0111222211111100000 000000000 000012223489999999999864 35667899999
Q ss_pred ecchhhHHHHHHHHHhcccccccccceEEeccC--CCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEE
Q 000380 431 VNRIVTARALSYILQNLKFLASWRCHFLVGVNA--GLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIR 508 (1601)
Q Consensus 431 v~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~--g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~ 508 (1601)
++.|.+|+.+..+|...+... + ..++|..+ +..+|++++|.+++++|++|++|||||||++|||+|||+||+||+
T Consensus 373 T~yRdTae~i~~~L~~~~~~~--~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif 449 (542)
T COG1111 373 TEYRDTAEEIVNFLKKIGIKA--R-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF 449 (542)
T ss_pred ehhHhHHHHHHHHHHhcCCcc--e-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE
Confidence 999999999999999876431 1 24566422 234799999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhhcC-CCCCCeEEEEEeCCCHhHHHHHHHHHHhHHHHHHHh
Q 000380 509 FDLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI 561 (1601)
Q Consensus 509 fd~p~s~~~yiQr~GRA-R~g~s~~vilv~~~~~~~~~~i~~~~~~e~~l~~~~ 561 (1601)
|++..|...++||+||+ |...+..++++.+++.++. ......+.++.|.+.+
T Consensus 450 YEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdea-yy~~s~rke~~m~e~i 502 (542)
T COG1111 450 YEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEA-YYYSSRRKEQKMIESI 502 (542)
T ss_pred ecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999995 7654455567887755443 3344445555565544
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=416.45 Aligned_cols=402 Identities=27% Similarity=0.370 Sum_probs=319.2
Q ss_pred cccccHhHhhhcccCchHHHHHHHHHHHHHHHHHhcCCCCCCccCCHHHHHHHhCcccccCC------------------
Q 000380 975 IIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQER------------------ 1036 (1601)
Q Consensus 975 ~~~~~~~~~~~~~~lPsi~~r~~~~l~a~~l~~~l~~~~~~~~~~~~~lll~AlT~~~~~~~------------------ 1036 (1601)
..++-.++++.++++|.+.|.|.-..--.-+...|+|.|. |..++.-||||||....
T Consensus 16 ~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~-----~r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r 90 (533)
T KOG1817|consen 16 KTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQ-----DRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIR 90 (533)
T ss_pred HhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeec-----chHHHHHHhcCchHHhhCCCCchhhhccccccCcC
Confidence 4567788999999999999988877666778889999874 36777789999874110
Q ss_pred ---------------------------------------CCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhh
Q 000380 1037 ---------------------------------------FSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNA 1077 (1601)
Q Consensus 1037 ---------------------------------------~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~ 1077 (1601)
..+||||||||++..+++|.++|..+|...||.|...|..+
T Consensus 91 ~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~ 170 (533)
T KOG1817|consen 91 QPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAI 170 (533)
T ss_pred CcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHH
Confidence 27899999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHH
Q 000380 1078 VNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIAD 1157 (1601)
Q Consensus 1078 v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD 1157 (1601)
|.|++|+.+|+++.+..|+... .|.. .|... --...+|+
T Consensus 171 vqnr~la~lakklrkd~fl~ya---------hg~d---l~~~~-----------------------------E~Kha~an 209 (533)
T KOG1817|consen 171 VQNRHLAKLAKKLRKDEFLLYA---------HGYD---LCFET-----------------------------ELKHAMAN 209 (533)
T ss_pred HHhHHHHHHHHHHHHHHHHHHh---------cCcc---hhhHH-----------------------------HHHHHHHH
Confidence 9999999999999999998721 1111 11100 03678999
Q ss_pred HHHHHhhccccccChHHHHHHHHHh--Cccc----cccch---hhhhhccccCCC--CCcchhhcHHHHHHHhCCccCCH
Q 000380 1158 VVEALVGAFIDDSGFKAATAFLKWI--GIQV----EFEAS---QVTNICISSKSF--LPLSASLDMATLEILLGHQFLHR 1226 (1601)
Q Consensus 1158 ~~EAliGA~~~~~g~~~a~~~~~~l--g~~~----~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~le~~lgy~F~~~ 1226 (1601)
||||+|||.|+++|...+....... +.+. .|... .+....+..... ...++...+-++|+++|..|.+.
T Consensus 210 ~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hi 289 (533)
T KOG1817|consen 210 CFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIHI 289 (533)
T ss_pred HHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998887654221 1111 11110 010000110000 01112233567999999999999
Q ss_pred HHHHHhhcCCCCCCC---CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHh
Q 000380 1227 GLLLQAFVHPSFNRL---GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303 (1601)
Q Consensus 1227 ~ll~~Alth~s~~~~---~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~ 1303 (1601)
+++.+|+|-.|.+.+ .++|||||||||+||++++|++||.+||+..+|.|+.||+.+|||++-+.+|..+|+++++.
T Consensus 290 rlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li 369 (533)
T KOG1817|consen 290 RLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLI 369 (533)
T ss_pred HHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhh
Confidence 999999999998854 78999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhhhhhc---ccCCC
Q 000380 1304 FDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF---SNLQL 1380 (1601)
Q Consensus 1304 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~~~~~---~~~~~ 1380 (1601)
.+...- ++ .....|.+||+|||+|||+|+|.|.. .+++|+..++.|.+.. .....
T Consensus 370 ~n~~~k-----~~---------------~~lk~K~~ADlfEAfiGaLyvD~~le--~~~qf~~~l~~Prl~~fi~nq~wn 427 (533)
T KOG1817|consen 370 TNFDLK-----DF---------------QNLKLKDYADLFEAFIGALYVDKGLE--YCRQFLRVLFFPRLKEFIRNQDWN 427 (533)
T ss_pred hCcchh-----hh---------------hhhhHHHHHHHHHHHHHHHhhcCCcH--HHHHHHHHHhhHHHHHHHHhhhcc
Confidence 644210 01 11236899999999999999997765 9999999999997754 45568
Q ss_pred ChhHHHHHHHhhcCCC------ccccc------ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhh
Q 000380 1381 NPIRELLELCNSYDLD------LQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448 (1601)
Q Consensus 1381 ~p~~~L~e~~~~~~~~------~~~~~------~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1448 (1601)
+|++.|+.+|-...+. ++++. +.+++.|.|.|+++|+. +++|.|+|.|.|..+||+.||+.++
T Consensus 428 dpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkr-----lat~~G~nik~Ae~rAA~~ALe~~~ 502 (533)
T KOG1817|consen 428 DPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKR-----LATGVGSNIKQAEMRAAMQALENLK 502 (533)
T ss_pred CcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEE-----EeeccCchHhHHHHHHHHHHHHHHH
Confidence 9999999999776554 23332 56678899999999987 8999999999999999999999998
Q ss_pred h
Q 000380 1449 A 1449 (1601)
Q Consensus 1449 ~ 1449 (1601)
.
T Consensus 503 ~ 503 (533)
T KOG1817|consen 503 M 503 (533)
T ss_pred h
Confidence 6
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=441.31 Aligned_cols=441 Identities=27% Similarity=0.350 Sum_probs=280.4
Q ss_pred chhhhhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc-CCcE
Q 000380 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKV 133 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-~l~v 133 (1601)
....+|+||.|++..|+.+|+||++|||+|||++|+..+... ++..++.+++|++||+.|+.||...+..++ +..+
T Consensus 59 ~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh---~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNH---FEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred CcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHH---HhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 456799999999999999999999999999999999998543 333445789999999999999997777664 3456
Q ss_pred EEEeCCC-CcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccC-ccceeEEEEecCccccccCCChHHHHHHHHcCCCC
Q 000380 134 RTFCGGS-KRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK-MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 134 ~~~~G~~-~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~-l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~ 211 (1601)
....|+. ........|. ..+|+|+|||++.+.|.++... ++.+.+|||||||+.. |+|+|..||+.+.....
T Consensus 136 T~~l~~~~~~~~r~~i~~----s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~--kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVA----SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTS--KNHPYNNIMREYLDLKN 209 (746)
T ss_pred eeeccCccCCCchhhhhc----ccceEEeChHhhhhhcccccccccceEEEEEEccccccc--ccccHHHHHHHHHHhhh
Confidence 6666664 3344445565 4999999999999999887555 5999999999999996 89999999988755433
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe--ecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS--VEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~--~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
..+|||||||||+... +.+.+.+..|...|+.+..+ ....+++.+....|.- ...+.....+.+.
T Consensus 210 -~~~qILgLTASpG~~~-----~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-------~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 210 -QGNQILGLTASPGSKL-----EQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-------LSLCERDIEDPFG 276 (746)
T ss_pred -ccccEEEEecCCCccH-----HHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-------HHHhhhhhhhhHH
Confidence 3359999999998332 34556666666666544322 2233444444433321 1111112223333
Q ss_pred HHHHHHHHHHHHHHhhhh-----cccchhhhhHHHHH-------------HHHhhhHHHHHHhhhhh--HHHHHHHHHhc
Q 000380 290 EQLAEIKREQYISALSRK-----LHDHQSLRNTTKQL-------------NRLHDSMKFCLENLGVC--GALHASYILLS 349 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~-----~~~~~~~~~~~~~l-------------~~~~~~~~~~~~~lg~~--~~~~~~~~~l~ 349 (1601)
..++.+........+... ....+......+.. -.+.......+..-|.. .++.+..-...
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 334333322211001000 00000000000000 00000111111111111 11111000000
Q ss_pred CchhHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhh-cccCCCceEE
Q 000380 350 GDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILST-FRLQQHMKCI 428 (1601)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~-~~~~~~~k~I 428 (1601)
.....+....+.+ .....++......+. .+. ...+...+|+..|.++|.+ |...++.|+|
T Consensus 357 e~~~~k~~~~~~e-----~~~~~~~~~~m~~~~-------------~l~-~~~~~~npkle~l~~~l~e~f~~~~dsR~I 417 (746)
T KOG0354|consen 357 EVALKKYLKLELE-----ARLIRNFTENMNELE-------------HLS-LDPPKENPKLEKLVEILVEQFEQNPDSRTI 417 (746)
T ss_pred ccchhHHHHHHhc-----chhhHHHHHHHHhhh-------------hhh-cCCCccChhHHHHHHHHHHHhhcCCCccEE
Confidence 0000000000000 000011111111000 000 1112348999999999874 5556788999
Q ss_pred EEecchhhHHHHHHHHHhcccccccccceEEeccCC--CCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEE
Q 000380 429 VFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAG--LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLV 506 (1601)
Q Consensus 429 IFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g--~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~V 506 (1601)
|||++|..|..|..+|.. ....++++..++|...+ ..+|++++|++++++|++|++|+||||+|+|||+||+.||+|
T Consensus 418 IFve~R~sa~~l~~~l~~-~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lV 496 (746)
T KOG0354|consen 418 IFVETRESALALKKWLLQ-LHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLV 496 (746)
T ss_pred EEEehHHHHHHHHHHHHh-hhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEE
Confidence 999999999999999986 22345688888886543 247999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhhcCCCCCCeEEEEEe
Q 000380 507 IRFDLPETVASFIQSRGRARMPQSEYAFLVD 537 (1601)
Q Consensus 507 I~fd~p~s~~~yiQr~GRAR~g~s~~vilv~ 537 (1601)
|+||...|+..++||+||||+.++.+++++.
T Consensus 497 IcYd~~snpIrmIQrrGRgRa~ns~~vll~t 527 (746)
T KOG0354|consen 497 ICYDYSSNPIRMVQRRGRGRARNSKCVLLTT 527 (746)
T ss_pred EEecCCccHHHHHHHhccccccCCeEEEEEc
Confidence 9999999999999999999999888888777
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=470.23 Aligned_cols=1230 Identities=22% Similarity=0.197 Sum_probs=679.3
Q ss_pred HHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCC
Q 000380 62 YQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHL-IRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGS 140 (1601)
Q Consensus 62 yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~-~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~ 140 (1601)
+|..-.+.+-+-+++....++-+++++.......+... +.....--.+|.++.+..+.+..+.++..+...+..++|..
T Consensus 248 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 327 (1606)
T KOG0701|consen 248 LRDSKHEYIHQFEVLRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGAS 327 (1606)
T ss_pred hhhcchhhhcccceeeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccc
Confidence 33333444444689999999999999885444322211 11111234689999999999999999988766777788875
Q ss_pred C-cCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCC-CCCCEEE
Q 000380 141 K-RLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI-MKVPRIF 218 (1601)
Q Consensus 141 ~-~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~-~~~p~il 218 (1601)
. ..|....|..++....|+..+....++.|.+..+.+..++....++|++.. ..+.|+..+..+.+... ....-++
T Consensus 328 ~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~--~~~~~~~~vq~~~r~~~~~~~~~i~ 405 (1606)
T KOG0701|consen 328 GANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFD--APTYYRSYVQKKGRARAADSYLVIL 405 (1606)
T ss_pred cCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheecc--CcchHHHHHHhhcccccchhhHHHH
Confidence 4 356666777778888999999999999999988889999999999999984 67789999999877654 2345578
Q ss_pred EEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCC-CCCCCchhhhHHHHHHHH--
Q 000380 219 GMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPV-INDTSSSYVTCSEQLAEI-- 295 (1601)
Q Consensus 219 gLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~l~~i-- 295 (1601)
|+|..+..-...............|.....+.+.....+.++...++.+....+.+... .-.... ....+..+
T Consensus 406 ~~t~~~~~~~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~----~~~~l~~~~~ 481 (1606)
T KOG0701|consen 406 GETLSAVSLKNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVG----LCLKLHKIGE 481 (1606)
T ss_pred HhhhhhhhhcChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHH----hHHHHHHhhh
Confidence 88877755443211111122223344444444433334444444444444333333211 000000 00011000
Q ss_pred HHHHHH--------HHhhhhcccchhh-----------hhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCc---hh
Q 000380 296 KREQYI--------SALSRKLHDHQSL-----------RNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGD---ET 353 (1601)
Q Consensus 296 ~~~~~~--------~~l~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~---~~ 353 (1601)
.+.+.. ..+.......+.+ ......++........+....|.||........+... ..
T Consensus 482 ~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~ 561 (1606)
T KOG0701|consen 482 LDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER 561 (1606)
T ss_pred hhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc
Confidence 001000 0000000000000 0000011111112222233444444433222211100 00
Q ss_pred --HHH---------HHHHh------h------cCCCchHHH-HHHHH-HHHHHHHHHhcC------CCCCccchhhhccC
Q 000380 354 --MRN---------ELIEA------E------GNTIDDSLC-RFASQ-ASEVFAAICRRD------GIASDLSCIEVLKE 402 (1601)
Q Consensus 354 --~~~---------~l~~~------~------~~~~~~~~~-~~l~~-~~~~l~~~~~~~------~~~~~~~~~~~l~~ 402 (1601)
+.. ..... . .....+... ..+.. ........+-.+ .....+..+... .
T Consensus 562 n~~~r~~~~~~~~~~~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~-~ 640 (1606)
T KOG0701|consen 562 NFERRKLYPPEDLTYCFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLAKI-N 640 (1606)
T ss_pred ccccccccCchhhhhhhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhhcc-c
Confidence 000 00000 0 000000000 00000 000000000000 000111111111 1
Q ss_pred CCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEE-eccCCCCcCCHHHHHHHHHHHh
Q 000380 403 PFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLV-GVNAGLKSMSRNAMKSILEKFR 481 (1601)
Q Consensus 403 ~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~v-g~~~g~~~~~~~~r~~~l~~Fr 481 (1601)
..+.++...|...+--+....+.++++|+..--++-.+-..+-........+..... +...+ ++....|......|+
T Consensus 641 ~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~rn~~~~~~~ 718 (1606)
T KOG0701|consen 641 LEFDPKTAELIETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSKDEVRKAKYFDGEDSQ--DAVGMYRNDDQPQFY 718 (1606)
T ss_pred cccCCchhhHHHHhcccccccccchhhhHHHHHHHHhCcccccCCCChhhhhhhhhcccccch--hhhhhhhccccccee
Confidence 223567777777776554556778888887655444433333322222233322222 22222 344447788888999
Q ss_pred cCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcCCCCCCeEEEEEeCCCHhHHHHHHHHHHhHHHHHHHh
Q 000380 482 SGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI 561 (1601)
Q Consensus 482 ~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vilv~~~~~~~~~~i~~~~~~e~~l~~~~ 561 (1601)
.+++..+++|+....|.|+--|+.|++++.-.+..++.|.+||+|.-.+.+-+++..++......+..+....+.++++.
T Consensus 719 ~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es 798 (1606)
T KOG0701|consen 719 VAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDES 798 (1606)
T ss_pred eeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999998888888888776655444444444455555554
Q ss_pred hhcCCCc---------cccccccceeeeCCCCcEEecCchHHHHHHHhccCCCCCCCCCcceEEEEeCCCcEEEEEEcCC
Q 000380 562 MDRTSSD---------AFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPA 632 (1601)
Q Consensus 562 ~~~~~~~---------~~~~~~~~~y~v~~tga~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~~~~~~~~~~~~v~LP~ 632 (1601)
.+..... ..+.+.+..|++..||+.++...|+.+|.+||++++.+.|...++... .....|.|.+.+|.
T Consensus 799 ~~~~~~~h~~~~s~~~~~~~~p~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~--~~~~~~~~~~~~~~ 876 (1606)
T KOG0701|consen 799 LEHSLIIHPALASLWRRAVCLPEILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEASKSD--KNKDEYSCDLALPK 876 (1606)
T ss_pred hhccCCCCcCcchhhhhhccCcchheeeccccceeeeecccchhhhhhhhccchhhccccccCC--CCccccceeecccC
Confidence 3332211 123455678999999999999999999999999888877776554332 12345899999999
Q ss_pred CCccceeecCCCCCHHHHHHHHHHHHHHHHHHcCcCCcCcCCCCCCCCCCCCcccCCCCCCcCCCCCccccccccccccc
Q 000380 633 NAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVL 712 (1601)
Q Consensus 633 ~~pl~~~~g~~~~s~~~Ak~~aa~~a~~~L~~~g~l~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 712 (1601)
.+|.....|....+.+.+++++++++|+.||+.|..+|++.|.........+.. .+..... +.+.+...+|
T Consensus 877 ~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~-----~~i~~a~-~p~~~~~~~~--- 947 (1606)
T KOG0701|consen 877 ENPVKQVLGKANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQVLAKR-----ESISLAT-RPELVSPFIP--- 947 (1606)
T ss_pred CCchhhhhchhhhhhHHHhhhhhhhhhhhhhcccccccccccCccccchhhhhc-----ccccccc-Cccccccccc---
Confidence 999998899888889999999999999999999999999999765533111000 0000000 0001111111
Q ss_pred ccccccCCCCeEEEEEEEEeecCCcccccccEE-EeeccCCCCccccceeEEEecCCcEEEEE---EeechhhHHHHHHH
Q 000380 713 RQSWTKSQYPVRLNFYFMQFIPDPADRIYREFG-LFVKSLLPGEAEHLKVDLHLARGRSVMTK---LVPSGIMQAQQFQE 788 (1601)
Q Consensus 713 ~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~lp~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~f~~ 788 (1601)
..+..-|.+...+.|...+. .+.. ++....+..+. ..-.+.+. +..... +..+.-.+++.++
T Consensus 948 -------~~~~~s~~~~n~l~~~~~~~--~~~~s~~~~~~~~~E~--~e~i~n~~--~~Fs~~~~~i~~~~s~LLEAlT- 1013 (1606)
T KOG0701|consen 948 -------EPPTTSHLISNRLSPSSPSN--SDLNSLLPNKRSDWEA--VEKILNFR--YVFSISLASIALSTSLLLEALT- 1013 (1606)
T ss_pred -------CCchhhhhhhhhcCccCCCC--CCcccccccccccccc--cccccccc--eeccccccccccchhHHHHHhh-
Confidence 00111122222222211100 0000 00000000000 00000000 000000 0000000011110
Q ss_pred HHHHHHhcccccccccccCCCCCccCCCCCcceEEeccCC--CCccccccccccccccCccCCCCCCcCcCCCCCCCCcc
Q 000380 789 MFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIF--HKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQ 866 (1601)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~--~~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1601)
.. .+. . ++.++... ....++|.+............+.+. -+
T Consensus 1014 --------~~-------------~~~----~-s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egql-----------s~ 1056 (1606)
T KOG0701|consen 1014 --------TS-------------SCQ----D-SFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQL-----------SR 1056 (1606)
T ss_pred --------cC-------------ccc----c-chhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhH-----------HH
Confidence 00 000 0 00000000 0122444444332110000000000 00
Q ss_pred ccCCCCCcccccCcEEEeccCCeE-EEEEeec----------CCCCCCCCCCC-CCCCChhhhhhhhcCccccCCCCCeE
Q 000380 867 LHNGWSSESDVENSLVYATHKKWF-YLVTNIV----------FEKNGYSPYKD-SDSSSHVDHLISSYGIHLKHPKQPLL 934 (1601)
Q Consensus 867 ~~~~~~~~~~~~~~vV~~~~~~~~-y~v~~i~----------~d~~p~s~~~~-~~~~t~~~y~~~~y~~~l~~~~QPll 934 (1601)
+.+...+.+.+.. .+.-.+-+ |+..++. .+.+|.. .+. +..-+|.+|.-..-++. -+.
T Consensus 1057 lr~~~~~~~nl~~---la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~-~k~~~~~~~~~~~~e~~e~~~------df~ 1126 (1606)
T KOG0701|consen 1057 LRDVNVSNDNLAR---LAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVD-CKDLSGDQNYILYKELDEKIK------DFQ 1126 (1606)
T ss_pred HHHhcccccchhh---hhhcccchhhccccccccccccccccccccccc-ccccccccccccccchhhhhh------HHH
Confidence 0000000000000 00000000 1110000 0111110 000 00112222211100000 000
Q ss_pred EeeecccccccccCCccCCcccccccccccccccc---ccccccccccHhHhhhcccCchHHHHHHHHHHHHHHHHHhcC
Q 000380 935 RAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPE---LCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSA 1011 (1601)
Q Consensus 935 ~~~~~~~~~nlL~~~~~~~~~~~~~~~~~~~L~PE---lc~~~~~~~~~~~~~~~~~lPsi~~r~~~~l~a~~l~~~l~~ 1011 (1601)
++.. ......... ...+...+++. +|.-.+-++-.+....+.+.+.+++.|.-..+..+.......
T Consensus 1127 e~~~------~~~~~~~~~-----~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~ 1195 (1606)
T KOG0701|consen 1127 EAME------KEDGDSRSK-----GGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPK 1195 (1606)
T ss_pred Hhhh------ccCCccccc-----ccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhccccc
Confidence 0000 000000000 00011122222 222212234444555566777777777755544443221100
Q ss_pred -----CC----------------CCC---ccCCHHHHHHHhCcccccCC-C-CCccccchhhhHHHHHHHHHHHhhCCCC
Q 000380 1012 -----SF----------------PEG---AEVSAEMLLKALTTEKCQER-F-SLERLEILGDAFLKYAVGRHLFLLHDTV 1065 (1601)
Q Consensus 1012 -----~~----------------~~~---~~~~~~lll~AlT~~~~~~~-~-~~ErLE~LGDs~Lk~~~s~~l~~~~p~~ 1065 (1601)
++ ..+ ......++.+|++|++.... . .+||++|+||++|++.++.+.|..+...
T Consensus 1196 ~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~ 1275 (1606)
T KOG0701|consen 1196 HAGKLSFRRSKIVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRL 1275 (1606)
T ss_pred chhhhhhhhhhHhhhhhHHHHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcc
Confidence 00 000 12344577889999886442 2 3899999999999999999999999999
Q ss_pred CcchhHHHHhhhhc--cHHHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCccccccc
Q 000380 1066 DEGELTRRRSNAVN--NSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRC 1143 (1601)
Q Consensus 1066 ~eg~ls~~r~~~v~--N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1143 (1601)
..|+++..|..-++ |.+++..+....|+-+.+
T Consensus 1276 ~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~---------------------------------------------- 1309 (1606)
T KOG0701|consen 1276 DGGELTDLREAGVNTLNENDLNVKVPKSLPYNLL---------------------------------------------- 1309 (1606)
T ss_pred cCcchhhhhhhhhhhhhhcccccccCCcceeeeh----------------------------------------------
Confidence 99999999999998 666666655444444443
Q ss_pred CCCccccchhhHHHHHHHHhhccccccChHHHHHHHHHhCccccccchhhhhhccccCCCCCcchhhcHHHHHHHhCCcc
Q 000380 1144 SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQF 1223 (1601)
Q Consensus 1144 ~~~~~~~~~k~lAD~~EAliGA~~~~~g~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F 1223 (1601)
..+.+.+|.++|++|++||+....+|...++.+|+|.+...++.... .+......+.....+..+|+.+||.|
T Consensus 1310 --~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~-----~~~~~~~~~~~l~~~~~~e~~l~y~f 1382 (1606)
T KOG0701|consen 1310 --DQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESI-----ASPDSIDELRQLLSFGKFEEKLNYRF 1382 (1606)
T ss_pred --hhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccc-----cccchhHHHHHHHHHHhhhcccchhh
Confidence 12345799999999999999999999999999998877654433210 00000001111233778999999999
Q ss_pred CCHHHHHHhhcCCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhH
Q 000380 1224 LHRGLLLQAFVHPSFNRL--GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKF 1301 (1601)
Q Consensus 1224 ~~~~ll~~Alth~s~~~~--~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~ 1301 (1601)
.++.++.+|+||.||..+ ..||||||||||+|++++|++|+|...+..+||.++++|+++|+|...|.+|++.++|+|
T Consensus 1383 ~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~ 1462 (1606)
T KOG0701|consen 1383 KLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKADLHKF 1462 (1606)
T ss_pred hhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhccccchhhHHhhcchhH
Confidence 999999999999999877 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcchhhhhhhhhhhccCCC--CcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhhhhhcccCC
Q 000380 1302 LIFDSNVLSETINNYVDYMITPS--STREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQ 1379 (1601)
Q Consensus 1302 l~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~~~~~~~~~ 1379 (1601)
+++.+..+...|.+++.+..... ...++.+....||++||+||++.||||+|+|...+.+.. .+. ...+
T Consensus 1463 ~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~~~----~~~-----a~p~ 1533 (1606)
T KOG0701|consen 1463 IIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPCIE----KFW-----ALPP 1533 (1606)
T ss_pred HHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhcccceeecCcccccchHhh----cCc-----CCCC
Confidence 99999999999999988765422 112345566889999999999999999999944222111 111 1223
Q ss_pred CChhHHHHHHHhhcCCCcccc-cccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q 000380 1380 LNPIRELLELCNSYDLDLQFP-SLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAG 1451 (1601)
Q Consensus 1380 ~~p~~~L~e~~~~~~~~~~~~-~~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1451 (1601)
..|+.++.++-+++- .+... .....+.-+++|.|.+++ ...|.|.+++.||..||+.|++.|...+
T Consensus 1534 ~s~~~E~~~~h~~~~-~~~~~~k~~d~~~~~~tv~~~~~~-----~~~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1534 RSPIRELLELHPERA-LFGKCEKVADAGKVRVTVDVFNKE-----VFAGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred ccchhhhccccceee-ccchhhhhhhccceEEEEEecccc-----hhhhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 444454444332211 01111 123346778888888888 5789999999999999999999987654
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=370.59 Aligned_cols=214 Identities=33% Similarity=0.461 Sum_probs=194.0
Q ss_pred cHHHHHHHhCCccCCHHHHHHhhcCCCCCCC---CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChH
Q 000380 1211 DMATLEILLGHQFLHRGLLLQAFVHPSFNRL---GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287 (1601)
Q Consensus 1211 ~~~~le~~lgy~F~~~~ll~~Alth~s~~~~---~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~ 1287 (1601)
.+..+++.+||+|+|+.||.+||||+||.+. ..+||||||||||||+++|++|||++||+.++|+||.+|+.+||++
T Consensus 7 ~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~ 86 (235)
T COG0571 7 KLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEE 86 (235)
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999975 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHH
Q 000380 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLS 1367 (1601)
Q Consensus 1288 ~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~ 1367 (1601)
+|+.+|..+||++||+.++++. ..++...|++++|+|||+|||||+|+|++ .+++|+.+
T Consensus 87 ~La~ia~~l~l~~~l~lg~ge~-------------------~~gg~~~~silaD~~EAligAiylD~g~~--~~~~~i~~ 145 (235)
T COG0571 87 SLAEIARELGLGDYLRLGKGEE-------------------KSGGRRRESILADAFEALIGAIYLDSGLE--AARKFILK 145 (235)
T ss_pred HHHHHHHHhCccchhhccCChh-------------------hcCCCCchhHHHHHHHHHHHHHHHhCChH--HHHHHHHH
Confidence 9999999999999999776542 34566779999999999999999999955 99999999
Q ss_pred hhhhhhhc-ccC--CCChhHHHHHHHhhcCCCccccc------ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHH
Q 000380 1368 FLDPILKF-SNL--QLNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRI 1438 (1601)
Q Consensus 1368 ~~~~~~~~-~~~--~~~p~~~L~e~~~~~~~~~~~~~------~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~ 1438 (1601)
++.|.+.. ... .++|+++||||+|..+...+.|. +.|++.|++.|.|++.. ++.|.|+|||+|++.
T Consensus 146 l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~-----~g~G~G~skk~AEq~ 220 (235)
T COG0571 146 LFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKE-----LGTGKGRSKKEAEQA 220 (235)
T ss_pred HHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCee-----EEEecccCHHHHHHH
Confidence 99998764 222 38999999999999998887665 67899999999999977 799999999999999
Q ss_pred HHHHHHHHhhhc
Q 000380 1439 ASQQLFSKLKAA 1450 (1601)
Q Consensus 1439 AA~~AL~~L~~~ 1450 (1601)
||+.||+.|...
T Consensus 221 AA~~al~~l~~~ 232 (235)
T COG0571 221 AAEQALKKLGVK 232 (235)
T ss_pred HHHHHHHHhccc
Confidence 999999998754
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=387.34 Aligned_cols=210 Identities=28% Similarity=0.413 Sum_probs=187.1
Q ss_pred HHHHHHHhCCccCCHHHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHH
Q 000380 1212 MATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFAN 1291 (1601)
Q Consensus 1212 ~~~le~~lgy~F~~~~ll~~Alth~s~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~ 1291 (1601)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||++||++++|.||.+|+.+|||++|+.
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~--e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~ 80 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA--THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYE 80 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc--ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 56799999999999999999999999975 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhh
Q 000380 1292 VAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP 1371 (1601)
Q Consensus 1292 ~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~ 1371 (1601)
+|..+||++||+.+.... ...+...|++|+|+|||||||||+|+|++ .+++||.++|.|
T Consensus 81 IAr~LGL~d~Lrlg~gE~-------------------~sgG~~~~sILADvFEALIGAIYLDsG~e--~a~~fI~~ll~p 139 (467)
T PRK14718 81 IAQALNISDGLRLGEGEL-------------------RSGGFRRPSILADAFEAIIGAVFLDGGFE--AAQGVIKRLYVP 139 (467)
T ss_pred HHHHcCchHHHhhCCccc-------------------ccCCCCChhHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHH
Confidence 999999999999755431 12334578999999999999999999976 999999999998
Q ss_pred hhhc---ccCCCChhHHHHHHHhhcCCCccccc------ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHH
Q 000380 1372 ILKF---SNLQLNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQ 1442 (1601)
Q Consensus 1372 ~~~~---~~~~~~p~~~L~e~~~~~~~~~~~~~------~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~ 1442 (1601)
++.. ....+|||+.||||||++++..+.|. +.|...|+|.|.|++.. +.+.|.|.|||+|++.||+.
T Consensus 140 ~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~----~~G~G~G~SKKeAEQ~AAk~ 215 (467)
T PRK14718 140 ILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLD----IKVSGSGASRRAAEQAAAKK 215 (467)
T ss_pred HHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCee----eEEEEEcCCHHHHHHHHHHH
Confidence 7653 23468999999999999998866443 67788999999998865 24899999999999999999
Q ss_pred HHHHhh
Q 000380 1443 LFSKLK 1448 (1601)
Q Consensus 1443 AL~~L~ 1448 (1601)
||+.|.
T Consensus 216 AL~kL~ 221 (467)
T PRK14718 216 ALDEVT 221 (467)
T ss_pred HHHHhc
Confidence 999997
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=376.16 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=187.7
Q ss_pred hhcHHHHHHHhCCccCCHHHHHHhhcCCCCCCC-CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChH
Q 000380 1209 SLDMATLEILLGHQFLHRGLLLQAFVHPSFNRL-GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287 (1601)
Q Consensus 1209 ~~~~~~le~~lgy~F~~~~ll~~Alth~s~~~~-~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~ 1287 (1601)
...+..||++|||+|+|+.||.+||||+|+... ..+||||||||||||+++|++|||.+||+.++|.||.+|+.+|||+
T Consensus 9 ~~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 9 AATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 346788999999999999999999999999864 5699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHH
Q 000380 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLS 1367 (1601)
Q Consensus 1288 ~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~ 1367 (1601)
+|+.+|.++||++||+.++... ...+...+|++||+|||+|||||+|+|++ .+++|+.+
T Consensus 89 ~La~ia~~lgL~~~i~~~~~~~-------------------~~~~~~~~~ilad~~EAliGAiylD~G~~--~a~~~i~~ 147 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTGSDVK-------------------KLTGKRLLNVRADVVEALIAAIYLDGGLE--AARPFIQR 147 (235)
T ss_pred HHHHHHHHCCcHHHhccCcchh-------------------hcCCcccchHHHHHHHHHHHHHHHcCCHH--HHHHHHHH
Confidence 9999999999999998765321 11233457999999999999999999976 99999999
Q ss_pred hhhhhhhc-ccCCCChhHHHHHHHhhcCCCc-cccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHH
Q 000380 1368 FLDPILKF-SNLQLNPIRELLELCNSYDLDL-QFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIAS 1440 (1601)
Q Consensus 1368 ~~~~~~~~-~~~~~~p~~~L~e~~~~~~~~~-~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA 1440 (1601)
++.|.+.. .....|||+.||||||+.+... .|.. +.|.+.|+|+|.|++.. .++|.|+|||+|++.||
T Consensus 148 ~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~-----~~~g~G~sKK~Ae~~AA 222 (235)
T PRK12371 148 YWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFA-----PETGEGRSKRAAEQVAA 222 (235)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEE-----EEEeeeCCHHHHHHHHH
Confidence 99986653 3345799999999999875544 3332 67889999999999887 79999999999999999
Q ss_pred HHHHHHhhh
Q 000380 1441 QQLFSKLKA 1449 (1601)
Q Consensus 1441 ~~AL~~L~~ 1449 (1601)
+.||+.|+.
T Consensus 223 ~~al~~~~~ 231 (235)
T PRK12371 223 EKMLEREGV 231 (235)
T ss_pred HHHHHHhhh
Confidence 999999864
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=385.40 Aligned_cols=211 Identities=28% Similarity=0.412 Sum_probs=186.9
Q ss_pred HHHHHHHhCCccCCHHHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHH
Q 000380 1212 MATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFAN 1291 (1601)
Q Consensus 1212 ~~~le~~lgy~F~~~~ll~~Alth~s~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~ 1291 (1601)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||++||++++|+||.+|+.+|||++|+.
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~--~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~ 80 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA--THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYE 80 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc--ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 56799999999999999999999999975 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhh
Q 000380 1292 VAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP 1371 (1601)
Q Consensus 1292 ~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~ 1371 (1601)
+|.++||++||+.+..+. ...+...+++|+|+|||||||||+|+|++ .++.|+.++|.|
T Consensus 81 IA~~LgL~~~Lrlg~ge~-------------------~sgg~~~~kILADvfEALIGAIYLDsG~e--~a~~fV~~ll~p 139 (413)
T PRK12372 81 IAQALNISEGLRLGEGEL-------------------RSGGFRRPSILADAFEAIIGAVFLDGGFE--AAQGVIKRLYVP 139 (413)
T ss_pred HHHHcCchHhhhcCcchh-------------------hcCCCCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH
Confidence 999999999999765432 12334568999999999999999999976 899999999998
Q ss_pred hhhc---ccCCCChhHHHHHHHhhcCCCccccc------ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHH
Q 000380 1372 ILKF---SNLQLNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQ 1442 (1601)
Q Consensus 1372 ~~~~---~~~~~~p~~~L~e~~~~~~~~~~~~~------~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~ 1442 (1601)
++.. ....+|||+.||||||++++..+.|. +.|+..|+|.|.|++.. +.+.|.|.|||+|++.||+.
T Consensus 140 ~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~----~~g~G~G~SKKeAEQ~AAr~ 215 (413)
T PRK12372 140 ILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLD----VKVSGSGASRRAAEQAAAKK 215 (413)
T ss_pred HHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeE----EEEEEEeCCHHHHHHHHHHH
Confidence 8754 23467999999999999988765443 66788999999998765 24799999999999999999
Q ss_pred HHHHhhh
Q 000380 1443 LFSKLKA 1449 (1601)
Q Consensus 1443 AL~~L~~ 1449 (1601)
||++|..
T Consensus 216 AL~kL~~ 222 (413)
T PRK12372 216 ALDEVMA 222 (413)
T ss_pred HHHHHhc
Confidence 9999984
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.43 Aligned_cols=321 Identities=27% Similarity=0.372 Sum_probs=246.4
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCc
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~ 132 (1601)
..|.+.|.++++.+++ +++|..+.||||||.+|++|| +.+++..+....++||+||++|+.|..+.+..+ +|++
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPI--l~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr 159 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPI--LQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLR 159 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHH--HHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeE
Confidence 3477899999999999 999999999999999999999 668888888889999999999999999888876 4799
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHh-ccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY-HRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~-~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~ 211 (1601)
+..+.||.+...+.. .....++|+|+||++|.+.+. .+.+++++++++|+|||++++++. |...+..+....+
T Consensus 160 ~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d---F~~~ld~ILk~ip 233 (476)
T KOG0330|consen 160 VAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD---FEEELDYILKVIP 233 (476)
T ss_pred EEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh---hHHHHHHHHHhcC
Confidence 999999987543332 234579999999999999988 667899999999999999998544 5544444433222
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQ 291 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1601)
...+.+..|||- ++.+.+|...- ..+|...... . .++.
T Consensus 234 -~erqt~LfsATM------------t~kv~kL~ras----------------l~~p~~v~~s---------~----ky~t 271 (476)
T KOG0330|consen 234 -RERQTFLFSATM------------TKKVRKLQRAS----------------LDNPVKVAVS---------S----KYQT 271 (476)
T ss_pred -ccceEEEEEeec------------chhhHHHHhhc----------------cCCCeEEecc---------c----hhcc
Confidence 235678888884 33455554211 1111111000 0 0000
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHH
Q 000380 292 LAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC 371 (1601)
Q Consensus 292 l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 371 (1601)
+..++.
T Consensus 272 v~~lkQ-------------------------------------------------------------------------- 277 (476)
T KOG0330|consen 272 VDHLKQ-------------------------------------------------------------------------- 277 (476)
T ss_pred hHHhhh--------------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccc
Q 000380 372 RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLA 451 (1601)
Q Consensus 372 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~ 451 (1601)
.|+ + + ....|...|+.+|++. .+..+||||++..+++.++-+|+.+++.
T Consensus 278 ~yl------f------------------v---~~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~- 326 (476)
T KOG0330|consen 278 TYL------F------------------V---PGKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQ- 326 (476)
T ss_pred heE------e------------------c---cccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcc-
Confidence 010 0 0 0034666788888875 3578999999999999999999998763
Q ss_pred ccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCCCCC
Q 000380 452 SWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQS 530 (1601)
Q Consensus 452 ~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g~s 530 (1601)
.+.+|| +|+++.|...+++|++|..+|||||||+++|+|+|.+++|||||.|.+..+||||+|| ||.|.+
T Consensus 327 ------a~~LhG---qmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrs 397 (476)
T KOG0330|consen 327 ------AIPLHG---QMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRS 397 (476)
T ss_pred ------eecccc---hhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCC
Confidence 566777 6999999999999999999999999999999999999999999999999999999999 799999
Q ss_pred eEEE-EEeCCCH
Q 000380 531 EYAF-LVDSGNQ 541 (1601)
Q Consensus 531 ~~vi-lv~~~~~ 541 (1601)
|.++ +++.-+.
T Consensus 398 G~~ItlVtqyDv 409 (476)
T KOG0330|consen 398 GKAITLVTQYDV 409 (476)
T ss_pred cceEEEEehhhh
Confidence 9998 7765443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=385.54 Aligned_cols=331 Identities=24% Similarity=0.337 Sum_probs=253.1
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc------CCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR------KPQKSICIFLAPTVALVQQQAKVIEESI- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~------~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~- 129 (1601)
.|.+.|...+..++. +|+|..+.||||||+.|++|+. .++.. .+.++++|||+|||+|+.|..+.+.++.
T Consensus 113 ~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i--~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~ 190 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAI--VHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK 190 (519)
T ss_pred CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHH--HHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC
Confidence 488999999999999 9999999999999999999983 34443 3446799999999999999999998875
Q ss_pred --CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHH
Q 000380 130 --GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDF 206 (1601)
Q Consensus 130 --~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~ 206 (1601)
+++..+++|+.....+....++ +.+|+|+||++|++++..+.+.++++.++|+|||++|++++..+ .+.|+...
T Consensus 191 ~~~~~~~cvyGG~~~~~Q~~~l~~---gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i 267 (519)
T KOG0331|consen 191 SLRLRSTCVYGGAPKGPQLRDLER---GVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQI 267 (519)
T ss_pred CCCccEEEEeCCCCccHHHHHHhc---CCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhc
Confidence 4679999999887666554443 79999999999999999999999999999999999999888655 44555554
Q ss_pred cCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhh
Q 000380 207 YKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 286 (1601)
.. ...+.+..||| ++..++.|..- |+.+|....+-...
T Consensus 268 ~~----~~rQtlm~saT------------wp~~v~~lA~~----------------fl~~~~~i~ig~~~---------- 305 (519)
T KOG0331|consen 268 PR----PDRQTLMFSAT------------WPKEVRQLAED----------------FLNNPIQINVGNKK---------- 305 (519)
T ss_pred CC----CcccEEEEeee------------ccHHHHHHHHH----------------HhcCceEEEecchh----------
Confidence 22 22257777777 45555555322 12222211110000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCC
Q 000380 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTI 366 (1601)
Q Consensus 287 ~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 366 (1601)
+ ++.
T Consensus 306 -------~--------------------------~~a------------------------------------------- 309 (519)
T KOG0331|consen 306 -------E--------------------------LKA------------------------------------------- 309 (519)
T ss_pred -------h--------------------------hhh-------------------------------------------
Confidence 0 000
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHh
Q 000380 367 DDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQN 446 (1601)
Q Consensus 367 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~ 446 (1601)
..++.+.+ . .| + ...|...|..+|..+....+.|+||||+++.+|+.|++.|+.
T Consensus 310 ~~~i~qiv----e----~~---------------~---~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~ 363 (519)
T KOG0331|consen 310 NHNIRQIV----E----VC---------------D---ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR 363 (519)
T ss_pred hcchhhhh----h----hc---------------C---HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh
Confidence 00000000 0 00 0 146778888888877656678999999999999999999997
Q ss_pred cccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-C
Q 000380 447 LKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-A 525 (1601)
Q Consensus 447 ~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-A 525 (1601)
.+. . ..++|+ +.++.+|..+|+.|++|+.+|||||+|+++|||||++++||+||+|.+..+|+||+|| |
T Consensus 364 ~~~----~---a~~iHG---d~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 364 KGW----P---AVAIHG---DKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTG 433 (519)
T ss_pred cCc----c---eeeecc---cccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccc
Confidence 542 1 567888 5999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCeEEE-EEeCCCHhHHHHH
Q 000380 526 RMPQSEYAF-LVDSGNQRELDLI 547 (1601)
Q Consensus 526 R~g~s~~vi-lv~~~~~~~~~~i 547 (1601)
|+|+.|.++ |++..+......+
T Consensus 434 Ra~~~G~A~tfft~~~~~~a~~l 456 (519)
T KOG0331|consen 434 RAGKKGTAITFFTSDNAKLAREL 456 (519)
T ss_pred cCCCCceEEEEEeHHHHHHHHHH
Confidence 999999887 6666555444433
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=387.19 Aligned_cols=325 Identities=20% Similarity=0.250 Sum_probs=233.2
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR-----KPQKSICIFLAPTVALVQQQAKVIEESI-- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-----~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-- 129 (1601)
.|+++|.++++.+++ +|+|+++|||||||++|++|+. .++.. ...+.++|||+||++||.|+.++++++.
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l--~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAI--VHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHH--HHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 488999999999999 9999999999999999999983 33332 2235789999999999999999988864
Q ss_pred -CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHc
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFY 207 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~ 207 (1601)
++++..++|+.....+ +.....+++|+|+||++|.+++.+....+.++++|||||||++.+.+..+ ...|+..+
T Consensus 230 ~~i~~~~~~gg~~~~~q---~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~- 305 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQ---IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI- 305 (545)
T ss_pred cCccEEEEeCCCCHHHH---HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC-
Confidence 5788888888764332 33333578999999999999999888889999999999999998655322 22333322
Q ss_pred CCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhh
Q 000380 208 KPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (1601)
....+++++|||.. ..+..+...+.. ..|....+ .........
T Consensus 306 ----~~~~q~l~~SAT~p------------~~v~~l~~~l~~---------------~~~v~i~v--g~~~l~~~~---- 348 (545)
T PTZ00110 306 ----RPDRQTLMWSATWP------------KEVQSLARDLCK---------------EEPVHVNV--GSLDLTACH---- 348 (545)
T ss_pred ----CCCCeEEEEEeCCC------------HHHHHHHHHHhc---------------cCCEEEEE--CCCccccCC----
Confidence 13468999999951 223333221110 00100000 000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCc
Q 000380 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTID 367 (1601)
Q Consensus 288 ~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 367 (1601)
T Consensus 349 -------------------------------------------------------------------------------- 348 (545)
T PTZ00110 349 -------------------------------------------------------------------------------- 348 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 368 DSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 368 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
.+.+. +..+. ...|...|.++|.... ..+.++||||+++.+|+.|++.|...
T Consensus 349 -~i~q~-----------------------~~~~~---~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 349 -NIKQE-----------------------VFVVE---EHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred -CeeEE-----------------------EEEEe---chhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHc
Confidence 00000 00000 0234555556665542 24679999999999999999999865
Q ss_pred ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-C
Q 000380 448 KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526 (1601)
Q Consensus 448 ~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R 526 (1601)
+. . ...+|+ ++++++|..++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+||+ |
T Consensus 401 g~----~---~~~ihg---~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 401 GW----P---ALCIHG---DKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred CC----c---EEEEEC---CCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 43 2 345676 49999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CCCCeEEE-EEeCCCHhH
Q 000380 527 MPQSEYAF-LVDSGNQRE 543 (1601)
Q Consensus 527 ~g~s~~vi-lv~~~~~~~ 543 (1601)
.|..|.++ +++.++...
T Consensus 471 ~G~~G~ai~~~~~~~~~~ 488 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRL 488 (545)
T ss_pred CCCCceEEEEECcchHHH
Confidence 99999887 556554433
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=389.99 Aligned_cols=460 Identities=28% Similarity=0.353 Sum_probs=284.4
Q ss_pred hhhhhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC---c
Q 000380 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF---K 132 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l---~ 132 (1601)
...+|+||.+++..++++|+||++|||+|||++|++++..+. . ..++++|||+||++|+.||.+.+++++++ +
T Consensus 13 ~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l---~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERL---H-KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHH---H-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 457999999999999999999999999999999999885533 2 34578999999999999999999998876 7
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~ 212 (1601)
+..++|+.....+...|. +++|+|+||+++.+.+..+.+.+.++++|||||||++. +++.|..++..|....
T Consensus 89 v~~~~g~~~~~~r~~~~~----~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~--~~~~~~~i~~~~~~~~-- 160 (773)
T PRK13766 89 IVVFTGEVSPEKRAELWE----KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAV--GNYAYVYIAERYHEDA-- 160 (773)
T ss_pred EEEEeCCCCHHHHHHHHh----CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccc--ccccHHHHHHHHHhcC--
Confidence 888999876544444554 58999999999999888888889999999999999996 6778888998876543
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe--ecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS--VEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSE 290 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~--~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (1601)
..|+++||||||... ...+..+...++..... .....++..++..+....+... +......+..
T Consensus 161 ~~~~il~lTaTP~~~---------~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~-----l~~~~~~i~~ 226 (773)
T PRK13766 161 KNPLVLGLTASPGSD---------EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVE-----LPEELKEIRD 226 (773)
T ss_pred CCCEEEEEEcCCCCC---------HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeC-----CcHHHHHHHH
Confidence 468999999999643 23455665555544332 2233466777766554433321 2222233333
Q ss_pred HHHHHHHHHHHHHhhhh--c-ccc-----hhhhhHHHHHHHHhhhHH-HHHHhhhhhHHHHHHHHHhcCchhHHHHHHHh
Q 000380 291 QLAEIKREQYISALSRK--L-HDH-----QSLRNTTKQLNRLHDSMK-FCLENLGVCGALHASYILLSGDETMRNELIEA 361 (1601)
Q Consensus 291 ~l~~i~~~~~~~~l~~~--~-~~~-----~~~~~~~~~l~~~~~~~~-~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~ 361 (1601)
.+..+...+. ..+... . ... ..+....+.++......- .....+........... ...++..
T Consensus 227 ~l~~~~~~~l-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~--------~~~~l~~ 297 (773)
T PRK13766 227 LLNEALKDRL-KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRH--------AVELLET 297 (773)
T ss_pred HHHHHHHHHH-HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 3333333222 111110 0 000 000000011110000000 00000000000000000 0000000
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHH---hcCCCCCc------cchhhhccCCCCCHHHHHHHHHHhhcc-cCCCceEEEEe
Q 000380 362 EGNTIDDSLCRFASQASEVFAAIC---RRDGIASD------LSCIEVLKEPFFSKKLLRLIGILSTFR-LQQHMKCIVFV 431 (1601)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~------~~~~~~l~~~~~s~K~~~L~~lL~~~~-~~~~~k~IIFv 431 (1601)
. ....+.+|+........... .......+ +.....+ ....+|+..|.++|.+.. ..++.++||||
T Consensus 298 ~---~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~pK~~~L~~il~~~~~~~~~~kvlIF~ 372 (773)
T PRK13766 298 Q---GVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKEL--DIEHPKLEKLREIVKEQLGKNPDSRIIVFT 372 (773)
T ss_pred h---CHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhc--ccCChHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 0 00011112111110000000 00000000 0000111 122689999999998642 24678999999
Q ss_pred cchhhHHHHHHHHHhcccccccccceEEeccC--CCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEc
Q 000380 432 NRIVTARALSYILQNLKFLASWRCHFLVGVNA--GLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRF 509 (1601)
Q Consensus 432 ~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~--g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~f 509 (1601)
+++.+++.|.+.|...+. ++..+.|..+ +..+|++.+|.+++++|++|++++||||+++++|+|+|+|++||+|
T Consensus 373 ~~~~t~~~L~~~L~~~~~----~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~y 448 (773)
T PRK13766 373 QYRDTAEKIVDLLEKEGI----KAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFY 448 (773)
T ss_pred CcHHHHHHHHHHHHhCCC----ceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEe
Confidence 999999999999976443 3334444311 0124899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhcC-CCCCCeEEEEEeCCCHhHHHHHHHHHHhHHHHHHH
Q 000380 510 DLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNRE 560 (1601)
Q Consensus 510 d~p~s~~~yiQr~GRA-R~g~s~~vilv~~~~~~~~~~i~~~~~~e~~l~~~ 560 (1601)
|+|+|+..|+||+||+ |.|....++|+..+..++...+. ..+.|+.+...
T Consensus 449 d~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~~y~~-~~~ke~~~~~~ 499 (773)
T PRK13766 449 EPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEAYYWS-SRRKEKKMKEE 499 (773)
T ss_pred CCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHHHHHH-hhHHHHHHHHH
Confidence 9999999999999996 88876666677777665543332 23334444333
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=380.53 Aligned_cols=320 Identities=21% Similarity=0.307 Sum_probs=226.8
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc-------CCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR-------KPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-------~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
.|+++|.++++.++. +|+|+++|||||||++|++|+.. +... ...+.++|||+||++|+.|+.+.++.+.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~--~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIIS--RCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHH--HHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 589999999999999 89999999999999999999843 3221 1245689999999999999888877653
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~ 205 (1601)
++++..+.|+.....+. .....+++|+|+||++|.+++....+.++++++|||||||++.+++... ...++..
T Consensus 221 ~~~~~~~~~~~gG~~~~~q~---~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~ 297 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQQL---YRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQA 297 (518)
T ss_pred CCCCceEEEEECCcchHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHh
Confidence 56777888876543322 2223468999999999999999888899999999999999997654222 2223322
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchh
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (1601)
+ ..++++++|||.. ..++.+...+......+ .+ ...... ...
T Consensus 298 l------~~~q~l~~SATl~------------~~v~~l~~~~~~~~~~i----------------~~--~~~~~~-~~~- 339 (518)
T PLN00206 298 L------SQPQVLLFSATVS------------PEVEKFASSLAKDIILI----------------SI--GNPNRP-NKA- 339 (518)
T ss_pred C------CCCcEEEEEeeCC------------HHHHHHHHHhCCCCEEE----------------Ee--CCCCCC-Ccc-
Confidence 2 3478999999962 23334433322111110 00 000000 000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCC
Q 000380 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNT 365 (1601)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 365 (1601)
+ ...-.|.
T Consensus 340 ------------------v----------------------------~q~~~~~-------------------------- 347 (518)
T PLN00206 340 ------------------V----------------------------KQLAIWV-------------------------- 347 (518)
T ss_pred ------------------e----------------------------eEEEEec--------------------------
Confidence 0 0000000
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHH
Q 000380 366 IDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ 445 (1601)
Q Consensus 366 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~ 445 (1601)
....|...|.++|.... ....++||||+++..++.|++.|.
T Consensus 348 --------------------------------------~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~ 388 (518)
T PLN00206 348 --------------------------------------ETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAIT 388 (518)
T ss_pred --------------------------------------cchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHh
Confidence 00123334455554321 123579999999999999999987
Q ss_pred hcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC
Q 000380 446 NLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525 (1601)
Q Consensus 446 ~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA 525 (1601)
.... ++ +..+|+ ++++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||
T Consensus 389 ~~~g---~~---~~~~Hg---~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 389 VVTG---LK---ALSIHG---EKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred hccC---cc---eEEeeC---CCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 5311 12 455676 49999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCCeEEE-EEeCCC
Q 000380 526 -RMPQSEYAF-LVDSGN 540 (1601)
Q Consensus 526 -R~g~s~~vi-lv~~~~ 540 (1601)
|.|..|.++ |+..++
T Consensus 460 GR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 460 SRMGEKGTAIVFVNEED 476 (518)
T ss_pred ccCCCCeEEEEEEchhH
Confidence 999999887 555443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=374.42 Aligned_cols=320 Identities=19% Similarity=0.211 Sum_probs=228.6
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC-------CCCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-------PQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~-------~~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
..|.+.|.++++.+++ +|+|+.+|||||||++|++++.+ .+... ..+.++|||+||++||.|+++.+..+
T Consensus 29 ~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~--~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l 106 (423)
T PRK04837 29 HNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFH--YLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL 106 (423)
T ss_pred CCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHH--HHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH
Confidence 3578999999999999 89999999999999999999843 33221 12468999999999999998877654
Q ss_pred ---cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 129 ---IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 129 ---~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
+++++..++|+.+.......+ -.+++|+|+||++|.+.+.++.+.++++++|||||||++.+.+ |...+..
T Consensus 107 ~~~~~~~v~~~~gg~~~~~~~~~l---~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~---f~~~i~~ 180 (423)
T PRK04837 107 AQATGLKLGLAYGGDGYDKQLKVL---ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG---FIKDIRW 180 (423)
T ss_pred hccCCceEEEEECCCCHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc---cHHHHHH
Confidence 478999999987643332222 2468999999999999999989999999999999999997544 3333333
Q ss_pred HcCCCCC-CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 206 FYKPDIM-KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 206 ~~~~~~~-~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
++..... .....+++|||.. ..+..+.. .+...|....+ .+.......
T Consensus 181 i~~~~~~~~~~~~~l~SAT~~------------~~~~~~~~----------------~~~~~p~~i~v--~~~~~~~~~- 229 (423)
T PRK04837 181 LFRRMPPANQRLNMLFSATLS------------YRVRELAF----------------EHMNNPEYVEV--EPEQKTGHR- 229 (423)
T ss_pred HHHhCCCccceeEEEEeccCC------------HHHHHHHH----------------HHCCCCEEEEE--cCCCcCCCc-
Confidence 3222221 2244688999962 12222211 11122221111 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcC
Q 000380 285 YVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364 (1601)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 364 (1601)
T Consensus 230 -------------------------------------------------------------------------------- 229 (423)
T PRK04837 230 -------------------------------------------------------------------------------- 229 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHH
Q 000380 365 TIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYIL 444 (1601)
Q Consensus 365 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L 444 (1601)
+.. .+-......|...|..++... ...++||||+++..++.+++.|
T Consensus 230 -----i~~--------------------------~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L 275 (423)
T PRK04837 230 -----IKE--------------------------ELFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHL 275 (423)
T ss_pred -----eeE--------------------------EEEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHH
Confidence 000 000000023555555665542 3468999999999999999999
Q ss_pred HhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc
Q 000380 445 QNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524 (1601)
Q Consensus 445 ~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR 524 (1601)
...+. + +..+|+ +|++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+||
T Consensus 276 ~~~g~----~---v~~lhg---~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR 345 (423)
T PRK04837 276 AADGH----R---VGLLTG---DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGR 345 (423)
T ss_pred HhCCC----c---EEEecC---CCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEecccc
Confidence 87543 2 445566 5999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCeEEE-EEeCC
Q 000380 525 A-RMPQSEYAF-LVDSG 539 (1601)
Q Consensus 525 A-R~g~s~~vi-lv~~~ 539 (1601)
+ |.|+.|.++ |+.++
T Consensus 346 ~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 346 TGRAGASGHSISLACEE 362 (423)
T ss_pred ccCCCCCeeEEEEeCHH
Confidence 5 999999998 44443
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=347.81 Aligned_cols=213 Identities=33% Similarity=0.517 Sum_probs=186.5
Q ss_pred cHHHHHHHhCCccCCHHHHHHhhcCCCCCC---CCCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChH
Q 000380 1211 DMATLEILLGHQFLHRGLLLQAFVHPSFNR---LGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287 (1601)
Q Consensus 1211 ~~~~le~~lgy~F~~~~ll~~Alth~s~~~---~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~ 1287 (1601)
++..||++|||+|+|+.||.+||||+||.. ...+|||||||||+||+++|++|||.+||+.++|.|+.+|+.+|||+
T Consensus 4 ~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~ 83 (229)
T PRK00102 4 DLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREE 83 (229)
T ss_pred hHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHH
Confidence 578899999999999999999999999965 26799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHH
Q 000380 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLS 1367 (1601)
Q Consensus 1288 ~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~ 1367 (1601)
+|+.+|.++||+++++.++... .......||+++|+|||+|||||+|+|++ .+++|+.+
T Consensus 84 ~la~~a~~lgl~~~i~~~~~~~-------------------~~~~~~~~k~~ad~~EA~iGAiyld~g~~--~~~~~i~~ 142 (229)
T PRK00102 84 SLAEIARELGLGEYLLLGKGEE-------------------KSGGRRRPSILADAFEALIGAIYLDQGLE--AARKFILR 142 (229)
T ss_pred HHHHHHHHCCcHHHHccCcHHH-------------------HcCCCCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHHH
Confidence 9999999999999998765321 11223568999999999999999999866 99999999
Q ss_pred hhhhhhhcc---cCCCChhHHHHHHHhhcCCCcc-ccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHH
Q 000380 1368 FLDPILKFS---NLQLNPIRELLELCNSYDLDLQ-FPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRI 1438 (1601)
Q Consensus 1368 ~~~~~~~~~---~~~~~p~~~L~e~~~~~~~~~~-~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~ 1438 (1601)
++.|++... ....||++.|+|+|++.++..+ |.. +.|.+.|+|+|.+++.. +++|.|.|||+|++.
T Consensus 143 ~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~-----~~~g~g~skk~Ae~~ 217 (229)
T PRK00102 143 LFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKE-----LGEGTGSSKKEAEQA 217 (229)
T ss_pred HHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEE-----EEEeeeCCHHHHHHH
Confidence 999977652 3458999999999999887654 322 45568899999998765 799999999999999
Q ss_pred HHHHHHHHhhh
Q 000380 1439 ASQQLFSKLKA 1449 (1601)
Q Consensus 1439 AA~~AL~~L~~ 1449 (1601)
||+.||+.|+.
T Consensus 218 AA~~Al~~l~~ 228 (229)
T PRK00102 218 AAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=376.10 Aligned_cols=316 Identities=21% Similarity=0.254 Sum_probs=231.7
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc----CCc
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI----GFK 132 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~----~l~ 132 (1601)
.|.++|.++++.+++ +|+|+++|||+|||++|++++.+ .+.......++|||+||++|+.|++++++.+. +++
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~--~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~ 103 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQ--KLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIK 103 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH--HhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 478999999999999 89999999999999999999854 33323334579999999999999999988763 588
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~ 211 (1601)
+..++|+.+...+...+. .+++|+|+||+++.+.+.++.+.++++++|||||||++.+.+... ...++..+
T Consensus 104 v~~~~Gg~~~~~~~~~l~---~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~----- 175 (460)
T PRK11776 104 VLTLCGGVPMGPQIDSLE---HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQA----- 175 (460)
T ss_pred EEEEECCCChHHHHHHhc---CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC-----
Confidence 999999977543332222 468999999999999999888889999999999999997554322 22333322
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQ 291 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1601)
....+++++|||+. +.+..+...+ ...|....+.-......
T Consensus 176 ~~~~q~ll~SAT~~------------~~~~~l~~~~----------------~~~~~~i~~~~~~~~~~----------- 216 (460)
T PRK11776 176 PARRQTLLFSATYP------------EGIAAISQRF----------------QRDPVEVKVESTHDLPA----------- 216 (460)
T ss_pred CcccEEEEEEecCc------------HHHHHHHHHh----------------cCCCEEEEECcCCCCCC-----------
Confidence 13467899999972 2233332221 12221111100000000
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHH
Q 000380 292 LAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC 371 (1601)
Q Consensus 292 l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 371 (1601)
+.
T Consensus 217 ------------------------------------------------------------------------------i~ 218 (460)
T PRK11776 217 ------------------------------------------------------------------------------IE 218 (460)
T ss_pred ------------------------------------------------------------------------------ee
Confidence 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccc
Q 000380 372 RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLA 451 (1601)
Q Consensus 372 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~ 451 (1601)
+++ + ......|...|..++... ...++||||+++..++.+++.|...+..
T Consensus 219 ~~~-------------------------~-~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~- 268 (460)
T PRK11776 219 QRF-------------------------Y-EVSPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNAQGFS- 268 (460)
T ss_pred EEE-------------------------E-EeCcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHhCCCc-
Confidence 000 0 000023555566666543 3458999999999999999999876431
Q ss_pred ccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCC
Q 000380 452 SWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQS 530 (1601)
Q Consensus 452 ~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s 530 (1601)
+..+|+ +|++.+|+.+++.|++|++++||||+++++|||+|++++||+||.|.++.+|+||+||+ |.|+.
T Consensus 269 ------v~~~hg---~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~ 339 (460)
T PRK11776 269 ------ALALHG---DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK 339 (460)
T ss_pred ------EEEEeC---CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc
Confidence 455676 59999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred eEEEE-EeCC
Q 000380 531 EYAFL-VDSG 539 (1601)
Q Consensus 531 ~~vil-v~~~ 539 (1601)
|.++. +..+
T Consensus 340 G~ai~l~~~~ 349 (460)
T PRK11776 340 GLALSLVAPE 349 (460)
T ss_pred ceEEEEEchh
Confidence 99884 4433
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=373.48 Aligned_cols=319 Identities=20% Similarity=0.268 Sum_probs=226.6
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC------CCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK------PQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~------~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
..|+++|.++++.+++ +|+|+.+|||+|||++|++++.+. +... ....++|||+||++|+.|+.+.++.+.
T Consensus 22 ~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~--l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~ 99 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH--LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS 99 (456)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH--hhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 3588999999999999 999999999999999999998543 2221 112479999999999999999988764
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC-hHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH-PYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~-~~~~i~~~ 205 (1601)
++++..++|+.+...+ +.....+++|+|+||++|++.+.+..+.++++++|||||||++.+++.. ....++..
T Consensus 100 ~~~~~~~~~~~gg~~~~~~---~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 100 KYLNIRSLVVFGGVSINPQ---MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred ccCCCEEEEEECCcCHHHH---HHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHh
Confidence 5788888998764332 2223346899999999999999888889999999999999999754421 12233332
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchh
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (1601)
+ ....+++++|||+. ..+..+...+ ..+|....+........ ..
T Consensus 177 l-----~~~~q~l~~SAT~~------------~~~~~l~~~~----------------~~~~~~i~~~~~~~~~~--~i- 220 (456)
T PRK10590 177 L-----PAKRQNLLFSATFS------------DDIKALAEKL----------------LHNPLEIEVARRNTASE--QV- 220 (456)
T ss_pred C-----CccCeEEEEeCCCc------------HHHHHHHHHH----------------cCCCeEEEEeccccccc--ce-
Confidence 2 13467899999972 1233332211 11221111100000000 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCC
Q 000380 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNT 365 (1601)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 365 (1601)
.... .
T Consensus 221 -------------------~~~~------------------------------------------~-------------- 225 (456)
T PRK10590 221 -------------------TQHV------------------------------------------H-------------- 225 (456)
T ss_pred -------------------eEEE------------------------------------------E--------------
Confidence 0000 0
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHH
Q 000380 366 IDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ 445 (1601)
Q Consensus 366 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~ 445 (1601)
+. ....|...|..++.. ....++||||+++..++.+++.|.
T Consensus 226 -------~~-----------------------------~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 226 -------FV-----------------------------DKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred -------Ec-----------------------------CHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHH
Confidence 00 001122223333332 234589999999999999999998
Q ss_pred hcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC
Q 000380 446 NLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525 (1601)
Q Consensus 446 ~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA 525 (1601)
..+.. +..+|+ +|++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+||+
T Consensus 267 ~~g~~-------~~~lhg---~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 267 KDGIR-------SAAIHG---NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred HCCCC-------EEEEEC---CCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 75432 445676 59999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCCeEEE-EEeCCC
Q 000380 526 -RMPQSEYAF-LVDSGN 540 (1601)
Q Consensus 526 -R~g~s~~vi-lv~~~~ 540 (1601)
|.|..|.++ ++..++
T Consensus 337 GR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 337 GRAAATGEALSLVCVDE 353 (456)
T ss_pred ccCCCCeeEEEEecHHH
Confidence 999999887 454443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=369.26 Aligned_cols=323 Identities=21% Similarity=0.300 Sum_probs=230.0
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCChhHHHHHHHHHHHH---
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR----KPQKSICIFLAPTVALVQQQAKVIEES--- 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~l~~~--- 128 (1601)
..|+++|.++++.+++ +|+|+++|||+|||++|++++.. ++.. .....++|||+||++|+.|+++.++.+
T Consensus 22 ~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~--~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~ 99 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQ--HLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKH 99 (434)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHH--HHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHcc
Confidence 3488999999999999 89999999999999999999843 3322 122468999999999999988877664
Q ss_pred cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcC
Q 000380 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 129 ~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~ 208 (1601)
+++++..++|+.........+ ..+++|+|+||++|++.+....+.+.++++|||||||++.+++ +...+.....
T Consensus 100 ~~~~v~~~~gg~~~~~~~~~l---~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~---~~~~~~~i~~ 173 (434)
T PRK11192 100 THLDIATITGGVAYMNHAEVF---SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG---FAQDIETIAA 173 (434)
T ss_pred CCcEEEEEECCCCHHHHHHHh---cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC---cHHHHHHHHH
Confidence 578999999987653332222 2367999999999999999888889999999999999997655 3333333222
Q ss_pred CCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhH
Q 000380 209 PDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (1601)
.. ....+++++|||+.. ..+..+...+. ..|... ...+......
T Consensus 174 ~~-~~~~q~~~~SAT~~~-----------~~~~~~~~~~~----------------~~~~~i--~~~~~~~~~~------ 217 (434)
T PRK11192 174 ET-RWRKQTLLFSATLEG-----------DAVQDFAERLL----------------NDPVEV--EAEPSRRERK------ 217 (434)
T ss_pred hC-ccccEEEEEEeecCH-----------HHHHHHHHHHc----------------cCCEEE--EecCCccccc------
Confidence 11 134689999999831 11222222111 111110 0000000000
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCch
Q 000380 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368 (1601)
Q Consensus 289 ~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 368 (1601)
T Consensus 218 -------------------------------------------------------------------------------- 217 (434)
T PRK11192 218 -------------------------------------------------------------------------------- 217 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcc
Q 000380 369 SLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK 448 (1601)
Q Consensus 369 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~ 448 (1601)
.+.+++ ........|...|..++.. ....++||||+++..++.++..|...+
T Consensus 218 ~i~~~~-------------------------~~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~ 269 (434)
T PRK11192 218 KIHQWY-------------------------YRADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKAG 269 (434)
T ss_pred CceEEE-------------------------EEeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhCC
Confidence 000000 0000002355555555543 235699999999999999999998754
Q ss_pred cccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CC
Q 000380 449 FLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527 (1601)
Q Consensus 449 ~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~ 527 (1601)
. + +..+|+ +|++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+ |.
T Consensus 270 ~----~---~~~l~g---~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 270 I----N---CCYLEG---EMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred C----C---EEEecC---CCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccC
Confidence 3 2 344566 59999999999999999999999999999999999999999999999999999999996 99
Q ss_pred CCCeEEE-EEeCCCH
Q 000380 528 PQSEYAF-LVDSGNQ 541 (1601)
Q Consensus 528 g~s~~vi-lv~~~~~ 541 (1601)
|..|.++ +++..+.
T Consensus 340 g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 340 GRKGTAISLVEAHDH 354 (434)
T ss_pred CCCceEEEEecHHHH
Confidence 9999887 4544333
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=370.18 Aligned_cols=319 Identities=22% Similarity=0.294 Sum_probs=227.0
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCC-------CcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ-------KSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~-------~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
.++++|.++++.+++ +|+|+.+|||||||++|++++.+ .+...+. ..++|||+||++|+.|+.+.++.+.
T Consensus 109 ~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~--~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~ 186 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIIN--QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186 (475)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHH--HHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh
Confidence 478999999999999 89999999999999999999843 4433321 4589999999999999999888764
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~ 205 (1601)
++++..++|+.........+. ...++|+|+||++|++.+.+....++++++|||||||++.+.+..+ +..++..
T Consensus 187 ~~~~~~v~~~~gg~~~~~~~~~~~--~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~ 264 (475)
T PRK01297 187 KYTGLNVMTFVGGMDFDKQLKQLE--ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQ 264 (475)
T ss_pred ccCCCEEEEEEccCChHHHHHHHh--CCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHh
Confidence 688999999865433332232 2357999999999999888888889999999999999997543222 2333333
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchh
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (1601)
+ .....++++++|||... .+..+... +...|....+........ ..
T Consensus 265 ~---~~~~~~q~i~~SAT~~~------------~~~~~~~~----------------~~~~~~~v~~~~~~~~~~--~~- 310 (475)
T PRK01297 265 T---PRKEERQTLLFSATFTD------------DVMNLAKQ----------------WTTDPAIVEIEPENVASD--TV- 310 (475)
T ss_pred C---CCCCCceEEEEEeecCH------------HHHHHHHH----------------hccCCEEEEeccCcCCCC--cc-
Confidence 2 11223689999999621 11222111 111221111100000000 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCC
Q 000380 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNT 365 (1601)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 365 (1601)
T Consensus 311 -------------------------------------------------------------------------------- 310 (475)
T PRK01297 311 -------------------------------------------------------------------------------- 310 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHH
Q 000380 366 IDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ 445 (1601)
Q Consensus 366 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~ 445 (1601)
.+++ .....+.|...|.+++.. ....++||||+++.+++.+++.|.
T Consensus 311 -----~~~~--------------------------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~ 356 (475)
T PRK01297 311 -----EQHV--------------------------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLV 356 (475)
T ss_pred -----cEEE--------------------------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 0000 000002344445555543 234689999999999999999998
Q ss_pred hcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC
Q 000380 446 NLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525 (1601)
Q Consensus 446 ~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA 525 (1601)
..+. . +..+|+ +++.++|.+++++|++|++++||||+++++|||+|++++||+||.|.|..+|+||+|||
T Consensus 357 ~~~~----~---~~~~~g---~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 357 KDGI----N---AAQLSG---DVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRT 426 (475)
T ss_pred HcCC----C---EEEEEC---CCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCcc
Confidence 7543 2 334555 59999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCCeEEEEEeC
Q 000380 526 -RMPQSEYAFLVDS 538 (1601)
Q Consensus 526 -R~g~s~~vilv~~ 538 (1601)
|.|+.|.++++..
T Consensus 427 GR~g~~g~~i~~~~ 440 (475)
T PRK01297 427 GRAGASGVSISFAG 440 (475)
T ss_pred CCCCCCceEEEEec
Confidence 9999998885543
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=326.30 Aligned_cols=325 Identities=23% Similarity=0.320 Sum_probs=247.5
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCc
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~ 132 (1601)
..|.|.|...+.+++. +|+|-++.||||||.++.+|| +.++...+.+--++|+.||++|+.|.++.|... .+++
T Consensus 28 ~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPi--l~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK 105 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPI--LNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLK 105 (442)
T ss_pred CCCCchHhhhhHHHhcccccccccccCCCcchhhhHHH--HHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccce
Confidence 4577899999999999 999999999999999999999 667778888889999999999999988887654 4789
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc----ccCccceeEEEEecCccccccCCChHHHHHHHHcC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR----FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~----~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~ 208 (1601)
+.+++|++....+...+ .+.++|+|+||+++.+.+... .+.+.++.++|+|||+++.+ ..|..++.....
T Consensus 106 ~~vivGG~d~i~qa~~L---~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~---~~f~d~L~~i~e 179 (442)
T KOG0340|consen 106 VSVIVGGTDMIMQAAIL---SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA---GCFPDILEGIEE 179 (442)
T ss_pred EEEEEccHHHhhhhhhc---ccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc---cchhhHHhhhhc
Confidence 99999998754433333 246999999999999888765 34588999999999999963 357778877766
Q ss_pred CCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhH
Q 000380 209 PDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (1601)
..+.+ .+-+.+|||.. +.+.++. ++.+ .++ ..+.+... ++.
T Consensus 180 ~lP~~-RQtLlfSATit------------d~i~ql~---~~~i-------------~k~--~a~~~e~~-~~v------- 220 (442)
T KOG0340|consen 180 CLPKP-RQTLLFSATIT------------DTIKQLF---GCPI-------------TKS--IAFELEVI-DGV------- 220 (442)
T ss_pred cCCCc-cceEEEEeehh------------hHHHHhh---cCCc-------------ccc--cceEEecc-CCC-------
Confidence 55432 46788899852 2333331 1100 111 00000000 000
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCch
Q 000380 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368 (1601)
Q Consensus 289 ~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 368 (1601)
...+
T Consensus 221 ----------------------------------------------------------------------------stve 224 (442)
T KOG0340|consen 221 ----------------------------------------------------------------------------STVE 224 (442)
T ss_pred ----------------------------------------------------------------------------Cchh
Confidence 0000
Q ss_pred HHH-HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 369 SLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 369 ~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
.+. .|+. .....|-..|..+|..|..+.+..++|||++..+++.|+..|+.+
T Consensus 225 tL~q~yI~---------------------------~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l 277 (442)
T KOG0340|consen 225 TLYQGYIL---------------------------VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL 277 (442)
T ss_pred hhhhheee---------------------------cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh
Confidence 000 1110 000345566788888887666789999999999999999999987
Q ss_pred ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CC
Q 000380 448 KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526 (1601)
Q Consensus 448 ~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR 526 (1601)
... ++.+|+ .|++++|...+.+||++.+++||||||+++|+|||.+++||+||.|.++..|+||+|| ||
T Consensus 278 e~r-------~~~lHs---~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtAR 347 (442)
T KOG0340|consen 278 EVR-------VVSLHS---QMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTAR 347 (442)
T ss_pred cee-------eeehhh---cchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhc
Confidence 542 667888 5999999999999999999999999999999999999999999999999999999999 79
Q ss_pred CCCCeEEE-EEeCCCH
Q 000380 527 MPQSEYAF-LVDSGNQ 541 (1601)
Q Consensus 527 ~g~s~~vi-lv~~~~~ 541 (1601)
+|+.|.++ +++..|.
T Consensus 348 AGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 348 AGRKGMAISIVTQRDV 363 (442)
T ss_pred ccCCcceEEEechhhH
Confidence 99999988 6664443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=336.40 Aligned_cols=325 Identities=22% Similarity=0.332 Sum_probs=235.5
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCChhHHHHHHHHHH---HHcC
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ---KSICIFLAPTVALVQQQAKVIE---ESIG 130 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~---~~~vl~LvPt~~Lv~Q~~~~l~---~~~~ 130 (1601)
.|.|.|...++-++- +|++.++.||||||-+|++|+++ +++-+|. ..||||||||++|+.|.+.+.+ ++++
T Consensus 203 ~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLE--RLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~ 280 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILE--RLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTD 280 (691)
T ss_pred CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHH--HHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcc
Confidence 378899999998877 99999999999999999999955 5554443 3589999999999999887665 4678
Q ss_pred CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-ccCccceeEEEEecCccccccCCChHHHHHHHHcCC
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKP 209 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~ 209 (1601)
+.++...||.+...+...++. .+||+|+||++|.+.+.+. .+.++++.++|+|||+++++.+ |..-|+++.+.
T Consensus 281 I~~~L~vGGL~lk~QE~~LRs---~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg---FademnEii~l 354 (691)
T KOG0338|consen 281 ITVGLAVGGLDLKAQEAVLRS---RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG---FADEMNEIIRL 354 (691)
T ss_pred ceeeeeecCccHHHHHHHHhh---CCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH---HHHHHHHHHHh
Confidence 999999999987666666654 6999999999999988765 6789999999999999998655 66666665443
Q ss_pred CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 210 DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
++ +..+.+.+||| +...+..|.++- ..+|....+ +|....... +.
T Consensus 355 cp-k~RQTmLFSAT------------MteeVkdL~slS----------------L~kPvrifv--d~~~~~a~~----Lt 399 (691)
T KOG0338|consen 355 CP-KNRQTMLFSAT------------MTEEVKDLASLS----------------LNKPVRIFV--DPNKDTAPK----LT 399 (691)
T ss_pred cc-ccccceeehhh------------hHHHHHHHHHhh----------------cCCCeEEEe--CCccccchh----hh
Confidence 32 23455666666 445566664431 223322211 111000000 00
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchH
Q 000380 290 EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS 369 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 369 (1601)
+
T Consensus 400 Q------------------------------------------------------------------------------- 400 (691)
T KOG0338|consen 400 Q------------------------------------------------------------------------------- 400 (691)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc
Q 000380 370 LCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF 449 (1601)
Q Consensus 370 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~ 449 (1601)
.|+. +. ..--..+-..|..++.... ..++||||.++..|..|.-+|--++.
T Consensus 401 --EFiR-----IR-------------------~~re~dRea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl 451 (691)
T KOG0338|consen 401 --EFIR-----IR-------------------PKREGDREAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGL 451 (691)
T ss_pred --HHhe-----ec-------------------cccccccHHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhc
Confidence 0000 00 0000112222333333211 34899999999999999888876543
Q ss_pred ccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCCC
Q 000380 450 LASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMP 528 (1601)
Q Consensus 450 ~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g 528 (1601)
+ +--+|| ++++.+|.+.+++|+++++++||||+++++|+||+.+.+||||+.|.+...|+||+|| ||+|
T Consensus 452 ----~---agElHG---sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAG 521 (691)
T KOG0338|consen 452 ----K---AGELHG---SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAG 521 (691)
T ss_pred ----h---hhhhcc---cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcc
Confidence 2 222455 6999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred CCeEEE-EEeCCCHhH
Q 000380 529 QSEYAF-LVDSGNQRE 543 (1601)
Q Consensus 529 ~s~~vi-lv~~~~~~~ 543 (1601)
+.|+.+ |+.+++.+.
T Consensus 522 RaGrsVtlvgE~dRkl 537 (691)
T KOG0338|consen 522 RAGRSVTLVGESDRKL 537 (691)
T ss_pred cCcceEEEeccccHHH
Confidence 999998 777666543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=368.62 Aligned_cols=317 Identities=20% Similarity=0.268 Sum_probs=225.1
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC-------CCCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-------PQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~-------~~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
..|.+.|.++++.+++ +|+|+.+|||+|||++|++++.+ ++... ....++|||+||++|+.|+++.+.++
T Consensus 30 ~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~--~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 30 TRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN--RLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHH--HHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 3588999999999999 89999999999999999999843 33321 12468999999999999999988876
Q ss_pred c---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-ccCccceeEEEEecCccccccCCCh-HHHHH
Q 000380 129 I---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-FIKMELIALLIFDECHHAQVKSNHP-YAKIM 203 (1601)
Q Consensus 129 ~---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~ 203 (1601)
. ++++..++|+.....+...+. .+++|+|+||++|++.+... .+.+.++++|||||||++.+.+... ...++
T Consensus 108 ~~~~~i~v~~l~Gg~~~~~q~~~l~---~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il 184 (572)
T PRK04537 108 GADLGLRFALVYGGVDYDKQRELLQ---QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLL 184 (572)
T ss_pred hccCCceEEEEECCCCHHHHHHHHh---CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHH
Confidence 4 688999999876433222222 35899999999999988764 5778999999999999997544211 12233
Q ss_pred HHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCc
Q 000380 204 KDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSS 283 (1601)
Q Consensus 204 ~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 283 (1601)
..+ ......+++++|||... .+..+.. .++..|....+........
T Consensus 185 ~~l---p~~~~~q~ll~SATl~~------------~v~~l~~----------------~~l~~p~~i~v~~~~~~~~--- 230 (572)
T PRK04537 185 RRM---PERGTRQTLLFSATLSH------------RVLELAY----------------EHMNEPEKLVVETETITAA--- 230 (572)
T ss_pred Hhc---ccccCceEEEEeCCccH------------HHHHHHH----------------HHhcCCcEEEecccccccc---
Confidence 222 11123679999999621 1111111 1111121111100000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhc
Q 000380 284 SYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEG 363 (1601)
Q Consensus 284 ~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~ 363 (1601)
T Consensus 231 -------------------------------------------------------------------------------- 230 (572)
T PRK04537 231 -------------------------------------------------------------------------------- 230 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHH
Q 000380 364 NTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYI 443 (1601)
Q Consensus 364 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~ 443 (1601)
.+.++ +.......|...|..++.. ..+.++||||+++..++.|++.
T Consensus 231 -----~i~q~--------------------------~~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~ 276 (572)
T PRK04537 231 -----RVRQR--------------------------IYFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVART 276 (572)
T ss_pred -----ceeEE--------------------------EEecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHH
Confidence 00000 0000002344555555543 2456899999999999999999
Q ss_pred HHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhh
Q 000380 444 LQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523 (1601)
Q Consensus 444 L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~G 523 (1601)
|...+. . +..+|+ +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||.|.+..+|+||+|
T Consensus 277 L~~~g~----~---v~~lhg---~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiG 346 (572)
T PRK04537 277 LERHGY----R---VGVLSG---DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIG 346 (572)
T ss_pred HHHcCC----C---EEEEeC---CCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhc
Confidence 987643 1 444565 599999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCCeEEEEE
Q 000380 524 RA-RMPQSEYAFLV 536 (1601)
Q Consensus 524 RA-R~g~s~~vilv 536 (1601)
|+ |.|..|.++.+
T Consensus 347 RaGR~G~~G~ai~~ 360 (572)
T PRK04537 347 RTARLGEEGDAISF 360 (572)
T ss_pred ccccCCCCceEEEE
Confidence 96 99999988844
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=370.86 Aligned_cols=316 Identities=21% Similarity=0.268 Sum_probs=229.0
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc----CC
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI----GF 131 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~----~l 131 (1601)
..|+++|.+++..+++ +|+|+.+|||+|||++|++++.+ .+.....+.++|||+||++|+.|+++++..+. ++
T Consensus 27 ~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~--~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i 104 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLH--NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV 104 (629)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHH--HhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 3588999999999999 89999999999999999999844 33223335689999999999999999887763 67
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPD 210 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~ 210 (1601)
++..++|+.+...+. .....+++|+|+||+++++.+.++.+.++++.+||+||||+++..+... ...++..+
T Consensus 105 ~v~~~~gG~~~~~q~---~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l---- 177 (629)
T PRK11634 105 NVVALYGGQRYDVQL---RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI---- 177 (629)
T ss_pred eEEEEECCcCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhC----
Confidence 888888886532221 1222468999999999999999988999999999999999997544221 22333332
Q ss_pred CCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHH
Q 000380 211 IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSE 290 (1601)
Q Consensus 211 ~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (1601)
....+++++|||.. ..+..+... |...|....+........ ..
T Consensus 178 -p~~~q~llfSAT~p------------~~i~~i~~~----------------~l~~~~~i~i~~~~~~~~--~i------ 220 (629)
T PRK11634 178 -PEGHQTALFSATMP------------EAIRRITRR----------------FMKEPQEVRIQSSVTTRP--DI------ 220 (629)
T ss_pred -CCCCeEEEEEccCC------------hhHHHHHHH----------------HcCCCeEEEccCccccCC--ce------
Confidence 12467899999962 122222211 222222111100000000 00
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHH
Q 000380 291 QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSL 370 (1601)
Q Consensus 291 ~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 370 (1601)
. .
T Consensus 221 ----------------------------------------------------------~-q------------------- 222 (629)
T PRK11634 221 ----------------------------------------------------------S-Q------------------- 222 (629)
T ss_pred ----------------------------------------------------------E-E-------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccc
Q 000380 371 CRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFL 450 (1601)
Q Consensus 371 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~ 450 (1601)
.|+ ......|...|..+|... ...++||||+++..+..|++.|...+..
T Consensus 223 -~~~---------------------------~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~~g~~ 271 (629)
T PRK11634 223 -SYW---------------------------TVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALERNGYN 271 (629)
T ss_pred -EEE---------------------------EechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHhCCCC
Confidence 000 000024555666666543 3458999999999999999999876431
Q ss_pred cccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCC
Q 000380 451 ASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQ 529 (1601)
Q Consensus 451 ~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~ 529 (1601)
+..+|+ +|++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+||+ |.|+
T Consensus 272 -------~~~lhg---d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 272 -------SAALNG---DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred -------EEEeeC---CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 445666 59999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred CeEEEEEe
Q 000380 530 SEYAFLVD 537 (1601)
Q Consensus 530 s~~vilv~ 537 (1601)
.|.++++.
T Consensus 342 ~G~ai~~v 349 (629)
T PRK11634 342 AGRALLFV 349 (629)
T ss_pred cceEEEEe
Confidence 99888544
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=366.17 Aligned_cols=320 Identities=23% Similarity=0.323 Sum_probs=238.3
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc-CCCCcE-EEEEeCChhHHHHHHHHHHHH---c-
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR-KPQKSI-CIFLAPTVALVQQQAKVIEES---I- 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-~~~~~~-vl~LvPt~~Lv~Q~~~~l~~~---~- 129 (1601)
..|.+.|..+++.++. +|+++.++||||||++|++|+.+ ++.. ...... +|||+||++||.|.+++++.+ +
T Consensus 50 ~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~--~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~ 127 (513)
T COG0513 50 EEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQ--KILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLG 127 (513)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHH--HHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcC
Confidence 3478999999999999 99999999999999999999954 4332 222222 999999999999999988775 4
Q ss_pred CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcC
Q 000380 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYK 208 (1601)
Q Consensus 130 ~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~ 208 (1601)
++++..++|+.+...+...... +++|+|+||+++++++.++.+.++++.++|+|||+++++.|... ...|+...
T Consensus 128 ~~~~~~i~GG~~~~~q~~~l~~---~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~-- 202 (513)
T COG0513 128 GLRVAVVYGGVSIRKQIEALKR---GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL-- 202 (513)
T ss_pred CccEEEEECCCCHHHHHHHHhc---CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC--
Confidence 5789999999876555444443 69999999999999999999999999999999999998765332 22333332
Q ss_pred CCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhH
Q 000380 209 PDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (1601)
+ ...+.+..|||.. ..+..+.. .+..+|....+...... .
T Consensus 203 --p-~~~qtllfSAT~~------------~~i~~l~~----------------~~l~~p~~i~v~~~~~~-~-------- 242 (513)
T COG0513 203 --P-PDRQTLLFSATMP------------DDIRELAR----------------RYLNDPVEIEVSVEKLE-R-------- 242 (513)
T ss_pred --C-cccEEEEEecCCC------------HHHHHHHH----------------HHccCCcEEEEcccccc-c--------
Confidence 1 1467888999862 22334322 12223331111100000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCch
Q 000380 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368 (1601)
Q Consensus 289 ~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 368 (1601)
...
T Consensus 243 -----------------------------------------------------------------------------~~~ 245 (513)
T COG0513 243 -----------------------------------------------------------------------------TLK 245 (513)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcc
Q 000380 369 SLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK 448 (1601)
Q Consensus 369 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~ 448 (1601)
.+.+++ +.-.....|+..|..++.... ..++||||+++..++.|+..|...+
T Consensus 246 ~i~q~~-------------------------~~v~~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g 297 (513)
T COG0513 246 KIKQFY-------------------------LEVESEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRG 297 (513)
T ss_pred CceEEE-------------------------EEeCCHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCC
Confidence 000000 000000147888888887653 3379999999999999999999876
Q ss_pred cccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCC
Q 000380 449 FLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARM 527 (1601)
Q Consensus 449 ~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~ 527 (1601)
.. +..+|| ++++++|.+++++|++|+.+||||||++++|||||++++||+||+|.++..|+||+|| ||+
T Consensus 298 ~~-------~~~lhG---~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRa 367 (513)
T COG0513 298 FK-------VAALHG---DLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRA 367 (513)
T ss_pred Ce-------EEEecC---CCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccC
Confidence 42 667787 5999999999999999999999999999999999999999999999999999999999 599
Q ss_pred CCCeEEE-EEeC
Q 000380 528 PQSEYAF-LVDS 538 (1601)
Q Consensus 528 g~s~~vi-lv~~ 538 (1601)
|.+|.++ |+.+
T Consensus 368 G~~G~ai~fv~~ 379 (513)
T COG0513 368 GRKGVAISFVTE 379 (513)
T ss_pred CCCCeEEEEeCc
Confidence 9999998 5544
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=334.09 Aligned_cols=207 Identities=32% Similarity=0.467 Sum_probs=180.0
Q ss_pred HHHHhCCccCCHHHHHHhhcCCCCCCC----CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHH
Q 000380 1215 LEILLGHQFLHRGLLLQAFVHPSFNRL----GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFA 1290 (1601)
Q Consensus 1215 le~~lgy~F~~~~ll~~Alth~s~~~~----~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la 1290 (1601)
||++|||+|+|+.||.+||||+||... ..+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999999752 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhh
Q 000380 1291 NVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLD 1370 (1601)
Q Consensus 1291 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~ 1370 (1601)
.+|.++||+++++.++... ...+...||+++|+|||+|||||+|+| ++.+++|+..++.
T Consensus 81 ~~a~~~gl~~~i~~~~~~~-------------------~~~~~~~~k~~ad~~eAliGAiyld~g--~~~~~~~i~~~~~ 139 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEE-------------------KSGGRRRESILADAFEALIGAIYLDSG--LEAARKFILKLLI 139 (220)
T ss_pred HHHHHCCcHHHhccCchHh-------------------hcCCcccchHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 9999999999998655321 112345689999999999999999999 5599999999999
Q ss_pred hhhhc---ccCCCChhHHHHHHHhhcCCC-ccccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHH
Q 000380 1371 PILKF---SNLQLNPIRELLELCNSYDLD-LQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQ 1441 (1601)
Q Consensus 1371 ~~~~~---~~~~~~p~~~L~e~~~~~~~~-~~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~ 1441 (1601)
|.+.. .....||++.|+|+|++.+.. +.|.. +.|.+.|+|.|.+++.. +++|.|.|||+|++.||+
T Consensus 140 ~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~-----~~~g~g~skk~A~~~AA~ 214 (220)
T TIGR02191 140 PRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEP-----YGEGKGKSKKEAEQNAAK 214 (220)
T ss_pred HHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEE-----EEEeeeCCHHHHHHHHHH
Confidence 97664 335589999999999987664 34432 44678999999998765 799999999999999999
Q ss_pred HHHHHh
Q 000380 1442 QLFSKL 1447 (1601)
Q Consensus 1442 ~AL~~L 1447 (1601)
.||+.|
T Consensus 215 ~Al~~l 220 (220)
T TIGR02191 215 AALEKL 220 (220)
T ss_pred HHHHhC
Confidence 999875
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=329.92 Aligned_cols=327 Identities=23% Similarity=0.328 Sum_probs=241.8
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHH-------HHhcCCCCcEEEEEeCChhHHHHHHHHHHHH-
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELA-------HLIRKPQKSICIFLAPTVALVQQQAKVIEES- 128 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~-------~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~- 128 (1601)
.|.|.|..++...++ +|+|.++.||||||.++++|+.... .+.....++.+++|+||++|++|..++-.++
T Consensus 267 eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~ 346 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFG 346 (673)
T ss_pred CCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhc
Confidence 377899999998888 9999999999999999999984321 1112234789999999999999988876665
Q ss_pred --cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHH
Q 000380 129 --IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKD 205 (1601)
Q Consensus 129 --~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~ 205 (1601)
+++++..+.|+.....+.-.. -.+|+|+|+||+.|.+.|.+.++-+++..++|+|||+++.+.|..+ +..|+..
T Consensus 347 ~~lg~r~vsvigg~s~EEq~fql---s~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~ 423 (673)
T KOG0333|consen 347 KPLGIRTVSVIGGLSFEEQGFQL---SMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQ 423 (673)
T ss_pred ccccceEEEEecccchhhhhhhh---hccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHh
Confidence 478999999998754432222 2479999999999999999999999999999999999999988876 6666665
Q ss_pred HcCCCCC--------------------CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccC
Q 000380 206 FYKPDIM--------------------KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVS 265 (1601)
Q Consensus 206 ~~~~~~~--------------------~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~ 265 (1601)
+=..+.. ...+.+.+||| ++..++.|.. .|+.
T Consensus 424 mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftat------------m~p~verlar----------------~ylr 475 (673)
T KOG0333|consen 424 MPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTAT------------MPPAVERLAR----------------SYLR 475 (673)
T ss_pred CCccccCCCccchhhHHHHHhhcccccceeEEEEEecC------------CChHHHHHHH----------------HHhh
Confidence 4111000 00223333333 2233333321 2333
Q ss_pred CCeEEEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHH
Q 000380 266 SPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASY 345 (1601)
Q Consensus 266 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~ 345 (1601)
+|....+-..-...
T Consensus 476 ~pv~vtig~~gk~~------------------------------------------------------------------ 489 (673)
T KOG0333|consen 476 RPVVVTIGSAGKPT------------------------------------------------------------------ 489 (673)
T ss_pred CCeEEEeccCCCCc------------------------------------------------------------------
Confidence 33322221100000
Q ss_pred HHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCc
Q 000380 346 ILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHM 425 (1601)
Q Consensus 346 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~ 425 (1601)
+.+.+.+ ..+ ..+.|...|.++|... ...
T Consensus 490 ----------------------~rveQ~v-----------------------~m~---~ed~k~kkL~eil~~~---~~p 518 (673)
T KOG0333|consen 490 ----------------------PRVEQKV-----------------------EMV---SEDEKRKKLIEILESN---FDP 518 (673)
T ss_pred ----------------------cchheEE-----------------------EEe---cchHHHHHHHHHHHhC---CCC
Confidence 0000000 000 0156888999999875 356
Q ss_pred eEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccE
Q 000380 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCL 505 (1601)
Q Consensus 426 k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~ 505 (1601)
++|||+|++..|+.|++.|.+.+.. ++.+|+| -++++|+.+|+.||.|..+|||||+|+++|||||+|.+
T Consensus 519 piIIFvN~kk~~d~lAk~LeK~g~~-------~~tlHg~---k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEKAGYK-------VTTLHGG---KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred CEEEEEechhhHHHHHHHHhhccce-------EEEeeCC---ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccce
Confidence 8999999999999999999987642 5567775 78999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhhc-CCCCCCeEEE-EEeCCCHh
Q 000380 506 VIRFDLPETVASFIQSRGR-ARMPQSEYAF-LVDSGNQR 542 (1601)
Q Consensus 506 VI~fd~p~s~~~yiQr~GR-AR~g~s~~vi-lv~~~~~~ 542 (1601)
||+||++.+..+|+||+|| ||+|++|.++ |++..+..
T Consensus 589 VinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 589 VINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred eeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 9999999999999999999 6999999998 77766654
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=352.42 Aligned_cols=321 Identities=21% Similarity=0.271 Sum_probs=223.6
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc---CCc
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~l~ 132 (1601)
..|+++|.++++.+++ +|+|+++|||+|||++|++++.. .+.....+.++|||+||++|+.|+.+.+..+. ++.
T Consensus 49 ~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~--~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 126 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQ--LIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVR 126 (401)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHH--HhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCce
Confidence 3589999999999999 89999999999999999999844 22222345689999999999999998887764 456
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~ 212 (1601)
+..+.|+.... ..|.....+++|+|+||+.+.+.+.++.+.++++++|||||||++.+.+ |...+...+... .
T Consensus 127 ~~~~~g~~~~~---~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~---~~~~~~~i~~~~-~ 199 (401)
T PTZ00424 127 CHACVGGTVVR---DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG---FKGQIYDVFKKL-P 199 (401)
T ss_pred EEEEECCcCHH---HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc---hHHHHHHHHhhC-C
Confidence 67777776532 2344444567999999999999998888889999999999999996433 332222222211 2
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
...+++++|||+.. .+..+.. .+...|....+...... ...
T Consensus 200 ~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~~--------- 240 (401)
T PTZ00424 200 PDVQVALFSATMPN------------EILELTT----------------KFMRDPKRILVKKDELT--LEG--------- 240 (401)
T ss_pred CCcEEEEEEecCCH------------HHHHHHH----------------HHcCCCEEEEeCCCCcc--cCC---------
Confidence 34789999999721 1112211 11222221111000000 000
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
+... + +...
T Consensus 241 -----------~~~~---------------------------------------------~-----~~~~---------- 249 (401)
T PTZ00424 241 -----------IRQF---------------------------------------------Y-----VAVE---------- 249 (401)
T ss_pred -----------ceEE---------------------------------------------E-----EecC----------
Confidence 0000 0 0000
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccc
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~ 452 (1601)
....+...+.+++... ...++||||+++..++.+++.|...+.
T Consensus 250 -------------------------------~~~~~~~~l~~~~~~~---~~~~~ivF~~t~~~~~~l~~~l~~~~~--- 292 (401)
T PTZ00424 250 -------------------------------KEEWKFDTLCDLYETL---TITQAIIYCNTRRKVDYLTKKMHERDF--- 292 (401)
T ss_pred -------------------------------hHHHHHHHHHHHHHhc---CCCeEEEEecCcHHHHHHHHHHHHCCC---
Confidence 0001222233333321 345899999999999999999987532
Q ss_pred cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCe
Q 000380 453 WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531 (1601)
Q Consensus 453 ~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~ 531 (1601)
. +..+|+ +++.++|..++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+||| |.|..|
T Consensus 293 -~---~~~~h~---~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G 365 (401)
T PTZ00424 293 -T---VSCMHG---DMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKG 365 (401)
T ss_pred -c---EEEEeC---CCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCc
Confidence 1 344565 59999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred EEEE-EeCCC
Q 000380 532 YAFL-VDSGN 540 (1601)
Q Consensus 532 ~vil-v~~~~ 540 (1601)
.++. ++.++
T Consensus 366 ~~i~l~~~~~ 375 (401)
T PTZ00424 366 VAINFVTPDD 375 (401)
T ss_pred eEEEEEcHHH
Confidence 8884 44333
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=303.70 Aligned_cols=331 Identities=22% Similarity=0.338 Sum_probs=241.2
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCcEE
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFKVR 134 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~v~ 134 (1601)
|...|..++..+++ +|+|+.+..|+|||..+.+.++. ..--......+++|.||++|+.|..+.+... +++++.
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq--~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQ--SLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeee--ecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 56689999999999 99999999999999877665522 1111122357999999999999998888764 568888
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCC
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKV 214 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (1601)
...|+.+...+..... -+.+|+.+||+++++++.++.++-..+.++|+|||+.+++++ +..-+-..|+..+ +.
T Consensus 128 acigg~n~gedikkld---~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg---fk~Qiydiyr~lp-~~ 200 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLD---YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG---FKEQIYDIYRYLP-PG 200 (400)
T ss_pred EEecCCccchhhhhhc---ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh---HHHHHHHHHHhCC-CC
Confidence 8999987654433333 478999999999999999999999999999999999998654 3332222333222 23
Q ss_pred CEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHH
Q 000380 215 PRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294 (1601)
Q Consensus 215 p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (1601)
.+++.+|||. +..+.++ ...|.++|....+.-+... ++
T Consensus 201 ~Qvv~~SATl------------p~eilem----------------t~kfmtdpvrilvkrdelt-------------lE- 238 (400)
T KOG0328|consen 201 AQVVLVSATL------------PHEILEM----------------TEKFMTDPVRILVKRDELT-------------LE- 238 (400)
T ss_pred ceEEEEeccC------------cHHHHHH----------------HHHhcCCceeEEEecCCCc-------------hh-
Confidence 6788899985 2333332 2345555543332211100 00
Q ss_pred HHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHH
Q 000380 295 IKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFA 374 (1601)
Q Consensus 295 i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l 374 (1601)
.+++|+
T Consensus 239 --------------------------------------------------------------------------gIKqf~ 244 (400)
T KOG0328|consen 239 --------------------------------------------------------------------------GIKQFF 244 (400)
T ss_pred --------------------------------------------------------------------------hhhhhe
Confidence 011111
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccc
Q 000380 375 SQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWR 454 (1601)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~ 454 (1601)
-. .-.+ .=|+..|.++..... -.+++|||+++..+++|.+.+++..+.
T Consensus 245 v~----------------------ve~E---ewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nft---- 292 (400)
T KOG0328|consen 245 VA----------------------VEKE---EWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFT---- 292 (400)
T ss_pred ee----------------------echh---hhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCce----
Confidence 00 0000 125566666665542 358999999999999999999876432
Q ss_pred cceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCCCCCeEE
Q 000380 455 CHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQSEYA 533 (1601)
Q Consensus 455 ~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g~s~~v 533 (1601)
+...|| +|.+++|.+++..||+|+.+|||+|+|-++|||+|.+++||+||+|.+...|+||+|| +|.|+.|++
T Consensus 293 ---VssmHG---Dm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 293 ---VSSMHG---DMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred ---eeeccC---CcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 555676 6999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred E-EEeCCCHhHHHHHHHHHH
Q 000380 534 F-LVDSGNQRELDLIKNFSK 552 (1601)
Q Consensus 534 i-lv~~~~~~~~~~i~~~~~ 552 (1601)
+ |+..++....+.++++..
T Consensus 367 inFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 367 INFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred EEEecHHHHHHHHHHHHHHh
Confidence 9 777666655555555543
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=318.24 Aligned_cols=320 Identities=23% Similarity=0.305 Sum_probs=232.3
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHH-hcCCCC--cEEEEEeCChhHHHHHHHHHHHHc----
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHL-IRKPQK--SICIFLAPTVALVQQQAKVIEESI---- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~-~~~~~~--~~vl~LvPt~~Lv~Q~~~~l~~~~---- 129 (1601)
...|.|...+...++ +|+++-++||||||+++++|+.++... ....++ --+|||+||++|+.|..+++..++
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 356899999999999 999999999999999999999775421 122222 268999999999999988876653
Q ss_pred CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc--ccCccceeEEEEecCccccccCCCh-HHHHHHHH
Q 000380 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR--FIKMELIALLIFDECHHAQVKSNHP-YAKIMKDF 206 (1601)
Q Consensus 130 ~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~ 206 (1601)
++++..+.|+.....+...+.+ ++++|+|+||++|.+++.+. .+++..+.++|+|||+++++.|... .+.|+..+
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fke--e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~L 185 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKE--EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFL 185 (567)
T ss_pred ccceEEEecCccHHHHHHHHHH--hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhc
Confidence 6889999999776666655655 46899999999999999985 4556699999999999998777443 33344332
Q ss_pred cCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhh
Q 000380 207 YKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 286 (1601)
+ +..|.=..|||- .+..+.|... ...+|....+.-.....
T Consensus 186 ----P-KQRRTGLFSATq------------~~~v~dL~ra----------------GLRNpv~V~V~~k~~~~------- 225 (567)
T KOG0345|consen 186 ----P-KQRRTGLFSATQ------------TQEVEDLARA----------------GLRNPVRVSVKEKSKSA------- 225 (567)
T ss_pred ----c-cccccccccchh------------hHHHHHHHHh----------------hccCceeeeeccccccc-------
Confidence 1 112222345553 2333333211 12222211111000000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCC
Q 000380 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTI 366 (1601)
Q Consensus 287 ~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 366 (1601)
.
T Consensus 226 -------------------------------------------------------------------------------t 226 (567)
T KOG0345|consen 226 -------------------------------------------------------------------------------T 226 (567)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred chHHH-HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHH
Q 000380 367 DDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ 445 (1601)
Q Consensus 367 ~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~ 445 (1601)
...+. .|+ .| .-..|+..|+++|... ...++|||..+-..+++....|.
T Consensus 227 PS~L~~~Y~---------v~------------------~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~ 276 (567)
T KOG0345|consen 227 PSSLALEYL---------VC------------------EADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFS 276 (567)
T ss_pred chhhcceee---------Ee------------------cHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHH
Confidence 00000 010 00 0046888889998874 46799999999999999999988
Q ss_pred hcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-
Q 000380 446 NLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR- 524 (1601)
Q Consensus 446 ~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR- 524 (1601)
... ....++++|| .|++..|..+++.|++..-.+|+||||+++|||||++++||+||+|.++..|+||+||
T Consensus 277 ~~l-----~~~~i~~iHG---K~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 277 RLL-----KKREIFSIHG---KMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHh-----CCCcEEEecc---hhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 752 2334778888 6999999999999999778899999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEE
Q 000380 525 ARMPQSEYAFLV 536 (1601)
Q Consensus 525 AR~g~s~~vilv 536 (1601)
||.|+.|.++++
T Consensus 349 aR~gr~G~Aivf 360 (567)
T KOG0345|consen 349 ARAGREGNAIVF 360 (567)
T ss_pred hhccCccceEEE
Confidence 699999988743
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=332.31 Aligned_cols=334 Identities=22% Similarity=0.261 Sum_probs=239.5
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCC----------CcEEEEEeCChhHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ----------KSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~----------~~~vl~LvPt~~Lv~Q~~~~l 125 (1601)
..|.++|.-.+..+.. ++.+++|+||+|||.++++|+.. ++++... .++++||+||++||.|.+++.
T Consensus 95 ~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~--~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIIS--YLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred cCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHH--HHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 3588999999999988 89999999999999999999944 4443321 368999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccc-cCCChH-H
Q 000380 126 EESI---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV-KSNHPY-A 200 (1601)
Q Consensus 126 ~~~~---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~-~~~~~~-~ 200 (1601)
+++. ++++...+|+.+...+. .....+++|+|+||++|.+++..+.+.++++.++|+|||+++++ .+..|. +
T Consensus 173 ~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir 249 (482)
T KOG0335|consen 173 RKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIR 249 (482)
T ss_pred HhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHH
Confidence 9986 47788888886544333 23335799999999999999999999999999999999999987 666663 3
Q ss_pred HHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCC
Q 000380 201 KIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVIND 280 (1601)
Q Consensus 201 ~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 280 (1601)
.|+... ........+-+..||| ++..+..+...+-...|.. +.+........
T Consensus 250 ~iv~~~-~~~~~~~~qt~mFSAt------------fp~~iq~l~~~fl~~~yi~--------------laV~rvg~~~~- 301 (482)
T KOG0335|consen 250 KIVEQL-GMPPKNNRQTLLFSAT------------FPKEIQRLAADFLKDNYIF--------------LAVGRVGSTSE- 301 (482)
T ss_pred HHhccc-CCCCccceeEEEEecc------------CChhhhhhHHHHhhccceE--------------EEEeeeccccc-
Confidence 444332 2222233455666666 3444444332221110000 00000000000
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHH
Q 000380 281 TSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIE 360 (1601)
Q Consensus 281 ~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~ 360 (1601)
T Consensus 302 -------------------------------------------------------------------------------- 301 (482)
T KOG0335|consen 302 -------------------------------------------------------------------------------- 301 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcc-c-----CCCceEEEEecch
Q 000380 361 AEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFR-L-----QQHMKCIVFVNRI 434 (1601)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~-~-----~~~~k~IIFv~~r 434 (1601)
.+.+ .+..+. -..|...|+++|.... . ....+++|||+++
T Consensus 302 --------ni~q-----------------------~i~~V~---~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~ 347 (482)
T KOG0335|consen 302 --------NITQ-----------------------KILFVN---EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETK 347 (482)
T ss_pred --------ccee-----------------------Eeeeec---chhhHHHHHHHhhcccCCcccCCcccceEEEEeecc
Confidence 0000 000000 0346666666665322 1 1124899999999
Q ss_pred hhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCC
Q 000380 435 VTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPET 514 (1601)
Q Consensus 435 ~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s 514 (1601)
..|..++.+|...+.. ...+|+ ..++.+|.+.++.|++|.+.+||||+|+++|+|||+|.+||+||+|.+
T Consensus 348 ~~~d~l~~~l~~~~~~-------~~sIhg---~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d 417 (482)
T KOG0335|consen 348 RGADELAAFLSSNGYP-------AKSIHG---DRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPAD 417 (482)
T ss_pred chhhHHHHHHhcCCCC-------ceeecc---hhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcc
Confidence 9999999999986542 556777 488999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCeEEE-EEeCCCHhHHHHH
Q 000380 515 VASFIQSRGR-ARMPQSEYAF-LVDSGNQRELDLI 547 (1601)
Q Consensus 515 ~~~yiQr~GR-AR~g~s~~vi-lv~~~~~~~~~~i 547 (1601)
..+|+||+|| +|.|++|.++ |++..+..-.+.+
T Consensus 418 ~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 418 IDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred hhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 9999999999 6999999998 6665554443333
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=348.95 Aligned_cols=324 Identities=18% Similarity=0.233 Sum_probs=229.1
Q ss_pred CCchhhhhHHHHHHHHHHhc----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 53 KDPKQIARKYQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 53 ~~~~~~~R~yQ~e~~~~~l~----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
..+...+|+||.+++.++.. ++.||++|||+|||++++..+..+ ++++|||||+..|+.||.++|.++
T Consensus 250 L~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 250 LKPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV--------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred cccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 34567799999999999885 368999999999999999876432 356999999999999999999998
Q ss_pred cC---CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhc--------cccCccceeEEEEecCccccccCCC
Q 000380 129 IG---FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH--------RFIKMELIALLIFDECHHAQVKSNH 197 (1601)
Q Consensus 129 ~~---l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~ 197 (1601)
++ ..+..++|+..... + ....|+|+|++++.+...+ ..+.-..+++||+|||||+. ..
T Consensus 322 ~~l~~~~I~~~tg~~k~~~----~----~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp---A~ 390 (732)
T TIGR00603 322 STIDDSQICRFTSDAKERF----H----GEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP---AA 390 (732)
T ss_pred cCCCCceEEEEecCccccc----c----cCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc---HH
Confidence 74 45777777654311 1 2378999999988643222 12334578999999999993 45
Q ss_pred hHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHH-hcccCCCeEEEEEecC
Q 000380 198 PYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDL-ESFVSSPVVRVYQYGP 276 (1601)
Q Consensus 198 ~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l-~~~~~~p~~~~~~~~~ 276 (1601)
.|+.++..+ +.+++|||||||.+.+.. +..|..+++..++..+-.+.+ ..|+.++....+.+.
T Consensus 391 ~fr~il~~l------~a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~- 454 (732)
T TIGR00603 391 MFRRVLTIV------QAHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCP- 454 (732)
T ss_pred HHHHHHHhc------CcCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEec-
Confidence 577777765 346789999999887643 334677788888876544444 346665543322221
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHH
Q 000380 277 VINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRN 356 (1601)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~ 356 (1601)
. ... +.... .. .+.
T Consensus 455 ~----t~~---~~~~y---l~----------------------------------------------------~~~---- 468 (732)
T TIGR00603 455 M----TPE---FYREY---LR----------------------------------------------------ENS---- 468 (732)
T ss_pred C----CHH---HHHHH---HH----------------------------------------------------hcc----
Confidence 1 000 00000 00 000
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhh
Q 000380 357 ELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 357 ~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~ 436 (1601)
. .+.. +... -..|+..+..++..+. ..+.++||||++...
T Consensus 469 ------------~-~k~~------l~~~--------------------np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~ 508 (732)
T TIGR00603 469 ------------R-KRML------LYVM--------------------NPNKFRACQFLIRFHE-QRGDKIIVFSDNVFA 508 (732)
T ss_pred ------------h-hhhH------Hhhh--------------------ChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHH
Confidence 0 0000 0000 0357777777776543 357899999999998
Q ss_pred HHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcC-CccEEEEecccccCccCCCccEEEEcCCC-CC
Q 000380 437 ARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG-ELNLLVATKVGEEGLDIQTCCLVIRFDLP-ET 514 (1601)
Q Consensus 437 a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g-~~~vLVaT~vleeGIDip~~~~VI~fd~p-~s 514 (1601)
+..+++.|.. . .++| +++..+|.+++++|++| .+++||+|+++.+|||+|++++||+++.| .|
T Consensus 509 l~~~a~~L~~---------~---~I~G---~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS 573 (732)
T TIGR00603 509 LKEYAIKLGK---------P---FIYG---PTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGS 573 (732)
T ss_pred HHHHHHHcCC---------c---eEEC---CCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCC
Confidence 8888877631 1 1344 59999999999999975 78999999999999999999999999998 59
Q ss_pred HHHHHHHhhcC-CCCCCeE
Q 000380 515 VASFIQSRGRA-RMPQSEY 532 (1601)
Q Consensus 515 ~~~yiQr~GRA-R~g~s~~ 532 (1601)
..+|+||+||+ |.+..+.
T Consensus 574 ~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 574 RRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred HHHHHHHhcccccCCCCCc
Confidence 99999999996 8875543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=364.45 Aligned_cols=342 Identities=19% Similarity=0.239 Sum_probs=228.2
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI--GFKVR 134 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~--~l~v~ 134 (1601)
.|+++|.++++.+++ +|+|+.+|||||||++|.+|+.+ .+.. .++.++|||+||++|+.||.+.++++. ++++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~--~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~ 112 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLS--ALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVRPA 112 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHH--HHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEE
Confidence 589999999999999 99999999999999999999844 3333 345689999999999999999999874 67888
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc----cCccceeEEEEecCccccccCCChHHHHHHHHcCCC
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF----IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~----~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~ 210 (1601)
.++|+.....+ .|. ..+++|+|+||+++...+.... ..++++++||+||||.+.+.-......++..+.+..
T Consensus 113 ~~~Gdt~~~~r--~~i--~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~ 188 (742)
T TIGR03817 113 TYDGDTPTEER--RWA--REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLC 188 (742)
T ss_pred EEeCCCCHHHH--HHH--hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHH
Confidence 89888764222 222 2358999999999975332211 126889999999999985321122344444432211
Q ss_pred --CCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhH
Q 000380 211 --IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288 (1601)
Q Consensus 211 --~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (1601)
....++++++|||..+. .+..+.+++..+..+... ..+.+......+.|.......
T Consensus 189 ~~~g~~~q~i~~SATi~n~------------~~~~~~l~g~~~~~i~~~-----~~~~~~~~~~~~~p~~~~~~~----- 246 (742)
T TIGR03817 189 ARYGASPVFVLASATTADP------------AAAASRLIGAPVVAVTED-----GSPRGARTVALWEPPLTELTG----- 246 (742)
T ss_pred HhcCCCCEEEEEecCCCCH------------HHHHHHHcCCCeEEECCC-----CCCcCceEEEEecCCcccccc-----
Confidence 12358999999997321 122333444322222110 011111122222221000000
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCch
Q 000380 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368 (1601)
Q Consensus 289 ~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 368 (1601)
. .+.
T Consensus 247 --------------------------------------------------------------~----------~~~---- 250 (742)
T TIGR03817 247 --------------------------------------------------------------E----------NGA---- 250 (742)
T ss_pred --------------------------------------------------------------c----------ccc----
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcc
Q 000380 369 SLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK 448 (1601)
Q Consensus 369 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~ 448 (1601)
.. .......+...+.+++. .+.++||||+++..++.++..|+...
T Consensus 251 ~~------------------------------r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~~l 295 (742)
T TIGR03817 251 PV------------------------------RRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARRLL 295 (742)
T ss_pred cc------------------------------ccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHHHH
Confidence 00 00000123333444443 24689999999999999999987641
Q ss_pred cccccc-cceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-C
Q 000380 449 FLASWR-CHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526 (1601)
Q Consensus 449 ~~~~~~-~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R 526 (1601)
...... ...+..+|+ ++++++|.+++++|++|++++||||+++++|||||++++||+||.|.+..+|+||+||| |
T Consensus 296 ~~~~~~l~~~v~~~hg---g~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR 372 (742)
T TIGR03817 296 GEVDPDLAERVAAYRA---GYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGR 372 (742)
T ss_pred Hhhccccccchhheec---CCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCC
Confidence 100000 112334566 49999999999999999999999999999999999999999999999999999999996 9
Q ss_pred CCCCeEEEEEeCCCHh
Q 000380 527 MPQSEYAFLVDSGNQR 542 (1601)
Q Consensus 527 ~g~s~~vilv~~~~~~ 542 (1601)
.|+.+.++++..++..
T Consensus 373 ~G~~g~ai~v~~~~~~ 388 (742)
T TIGR03817 373 RGQGALVVLVARDDPL 388 (742)
T ss_pred CCCCcEEEEEeCCChH
Confidence 9999999877655443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=351.65 Aligned_cols=317 Identities=18% Similarity=0.222 Sum_probs=217.9
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRT 135 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~ 135 (1601)
..+|++|.++++.+++ +|+++++|||+|||++|++|+.. .++.+|||+|+++|+.||.+.++. .++++..
T Consensus 10 ~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~ 80 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--------SDGITLVISPLISLMEDQVLQLKA-SGIPATF 80 (470)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEEE
Confidence 4589999999999999 89999999999999999999732 245799999999999999999976 4888888
Q ss_pred EeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHH-hcccc-CccceeEEEEecCccccccCCC---hHHHHHHHHcCC
Q 000380 136 FCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCL-YHRFI-KMELIALLIFDECHHAQVKSNH---PYAKIMKDFYKP 209 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l-~~~~~-~l~~i~llI~DEaH~~~~~~~~---~~~~i~~~~~~~ 209 (1601)
+.|+.........+.... ...+|+++||+.+.... ....+ ...++++|||||||++.+++.. .|..+-. +...
T Consensus 81 l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~-l~~~ 159 (470)
T TIGR00614 81 LNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS-LKQK 159 (470)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH-HHHH
Confidence 888766443333443332 24789999999875322 11112 4678999999999999876633 1332211 1111
Q ss_pred CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 210 DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
. +..++++||||+... ....+...++. ..|......+... ...
T Consensus 160 ~--~~~~~l~lTAT~~~~-----------~~~di~~~l~l---------------~~~~~~~~s~~r~--nl~------- 202 (470)
T TIGR00614 160 F--PNVPIMALTATASPS-----------VREDILRQLNL---------------KNPQIFCTSFDRP--NLY------- 202 (470)
T ss_pred c--CCCceEEEecCCCHH-----------HHHHHHHHcCC---------------CCCcEEeCCCCCC--CcE-------
Confidence 1 235689999998321 11122222211 0111100000000 000
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchH
Q 000380 290 EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS 369 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 369 (1601)
+
T Consensus 203 ----------------------------------------------------------~--------------------- 203 (470)
T TIGR00614 203 ----------------------------------------------------------Y--------------------- 203 (470)
T ss_pred ----------------------------------------------------------E---------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc
Q 000380 370 LCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF 449 (1601)
Q Consensus 370 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~ 449 (1601)
.... .....+..+...+... .++.++||||+++..++.++..|...+.
T Consensus 204 ----------------------------~v~~--~~~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~~g~ 251 (470)
T TIGR00614 204 ----------------------------EVRR--KTPKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQNLGI 251 (470)
T ss_pred ----------------------------EEEe--CCccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHhcCC
Confidence 0000 0001122233333321 2356789999999999999999987643
Q ss_pred ccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCC
Q 000380 450 LASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMP 528 (1601)
Q Consensus 450 ~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g 528 (1601)
. +..+|+ +|++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||| |.|
T Consensus 252 ~-------~~~~H~---~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G 321 (470)
T TIGR00614 252 A-------AGAYHA---GLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG 321 (470)
T ss_pred C-------eeEeeC---CCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCC
Confidence 2 445676 49999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CCeEEEE-EeCCCH
Q 000380 529 QSEYAFL-VDSGNQ 541 (1601)
Q Consensus 529 ~s~~vil-v~~~~~ 541 (1601)
..+.+++ +...+.
T Consensus 322 ~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 322 LPSECHLFYAPADI 335 (470)
T ss_pred CCceEEEEechhHH
Confidence 9998874 444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=354.47 Aligned_cols=307 Identities=18% Similarity=0.233 Sum_probs=215.2
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
.+|++|.++++.++. +|+|+.+|||+|||++|++|++. .+..+|||+|+++|+.+|...+.. .++++..+
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~--------~~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L 530 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI--------CPGITLVISPLVSLIQDQIMNLLQ-ANIPAASL 530 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH--------cCCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 489999999999999 99999999999999999999842 135799999999999988887766 48999999
Q ss_pred eCCCCcCCchhhHHhhh---ccCeEEEEcHHHHHH--HHhccc---cCccceeEEEEecCccccccCCC---hHHHH--H
Q 000380 137 CGGSKRLKSHCDWEKEI---DQYEVLVMIPQILLY--CLYHRF---IKMELIALLIFDECHHAQVKSNH---PYAKI--M 203 (1601)
Q Consensus 137 ~G~~~~~~~~~~~~~~~---~~~~VlV~Tp~~l~~--~l~~~~---~~l~~i~llI~DEaH~~~~~~~~---~~~~i--~ 203 (1601)
.|+.........+.... ...+|+++||++|.. .+.+.. .....+.+|||||||++.+||.. .|..+ +
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L 610 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL 610 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHH
Confidence 99877544444444322 457999999999862 122111 12345899999999999887633 24332 2
Q ss_pred HHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccC---eEEeecCHHHHhcccCCCeEEEEEecCCCCC
Q 000380 204 KDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA---KVYSVEDAEDLESFVSSPVVRVYQYGPVIND 280 (1601)
Q Consensus 204 ~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~---~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 280 (1601)
+..+ ...++++||||.... ... .+...|+- .++. ....+|.+.... .+.
T Consensus 611 r~~f-----p~vPilALTATAT~~--------V~e---DI~~~L~l~~~~vfr--------~Sf~RpNL~y~V-v~k--- 662 (1195)
T PLN03137 611 KQKF-----PNIPVLALTATATAS--------VKE---DVVQALGLVNCVVFR--------QSFNRPNLWYSV-VPK--- 662 (1195)
T ss_pred HHhC-----CCCCeEEEEecCCHH--------HHH---HHHHHcCCCCcEEee--------cccCccceEEEE-ecc---
Confidence 2221 124578999997321 111 12222211 1110 001111110000 000
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHH
Q 000380 281 TSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIE 360 (1601)
Q Consensus 281 ~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~ 360 (1601)
T Consensus 663 -------------------------------------------------------------------------------- 662 (1195)
T PLN03137 663 -------------------------------------------------------------------------------- 662 (1195)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHH
Q 000380 361 AEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARAL 440 (1601)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L 440 (1601)
.......+.+++... ..+.++||||.++..++.+
T Consensus 663 --------------------------------------------~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~L 696 (1195)
T PLN03137 663 --------------------------------------------TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKV 696 (1195)
T ss_pred --------------------------------------------chhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHH
Confidence 000011122222221 1245799999999999999
Q ss_pred HHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHH
Q 000380 441 SYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQ 520 (1601)
Q Consensus 441 ~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQ 520 (1601)
+..|...+.. +..+|+| |++++|..++++|++|+++|||||+++++|||+|++++|||||+|.++..|+|
T Consensus 697 Ae~L~~~Gik-------a~~YHAG---Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQ 766 (1195)
T PLN03137 697 AERLQEFGHK-------AAFYHGS---MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 766 (1195)
T ss_pred HHHHHHCCCC-------eeeeeCC---CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHh
Confidence 9999876542 4456774 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC-CCCCCeEEEEEe
Q 000380 521 SRGRA-RMPQSEYAFLVD 537 (1601)
Q Consensus 521 r~GRA-R~g~s~~vilv~ 537 (1601)
|+||| |.|..+.++++-
T Consensus 767 riGRAGRDG~~g~cILly 784 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred hhcccCCCCCCceEEEEe
Confidence 99996 999999888554
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=315.08 Aligned_cols=320 Identities=21% Similarity=0.258 Sum_probs=237.8
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCChhHHHHHHHHHHH---HcCC
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVALVQQQAKVIEE---SIGF 131 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~--~~~~vl~LvPt~~Lv~Q~~~~l~~---~~~l 131 (1601)
.+.+.|...+..++. +++|.++-||||||++++.|+++-....+.. .|--+|||.||++|+.|.++++.+ +.++
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~f 170 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDF 170 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcccc
Confidence 378899999999999 9999999999999999999996644333332 355699999999999999998876 4578
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-ccCccceeEEEEecCccccccCCChHHHHHHHHcCCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~ 210 (1601)
..+.+.||......... +.+.+|+||||++|+..+... .+.-.++.+||+|||++++++| |...+.......
T Consensus 171 SaGLiiGG~~~k~E~eR----i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG---Fk~tL~~Ii~~l 243 (758)
T KOG0343|consen 171 SAGLIIGGKDVKFELER----ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG---FKKTLNAIIENL 243 (758)
T ss_pred ccceeecCchhHHHHHh----hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh---HHHHHHHHHHhC
Confidence 99999999874333222 346899999999999888765 6778899999999999999877 444333332222
Q ss_pred CCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHH
Q 000380 211 IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSE 290 (1601)
Q Consensus 211 ~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (1601)
....+.|.+|||+... +..|.++ ...+|.+.-+.-....
T Consensus 244 -P~~RQTLLFSATqt~s------------vkdLaRL----------------sL~dP~~vsvhe~a~~------------ 282 (758)
T KOG0343|consen 244 -PKKRQTLLFSATQTKS------------VKDLARL----------------SLKDPVYVSVHENAVA------------ 282 (758)
T ss_pred -Chhheeeeeecccchh------------HHHHHHh----------------hcCCCcEEEEeccccc------------
Confidence 2346789999998432 2233222 1223332222100000
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHH
Q 000380 291 QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSL 370 (1601)
Q Consensus 291 ~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 370 (1601)
.....+
T Consensus 283 --------------------------------------------------------------------------atP~~L 288 (758)
T KOG0343|consen 283 --------------------------------------------------------------------------ATPSNL 288 (758)
T ss_pred --------------------------------------------------------------------------cChhhh
Confidence 000001
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccc
Q 000380 371 CRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFL 450 (1601)
Q Consensus 371 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~ 450 (1601)
.+++ -. .....|+..|...+..+ ...+.|||+.+...+..+++.+..+..
T Consensus 289 ~Q~y-----------------------~~---v~l~~Ki~~L~sFI~sh---lk~K~iVF~SscKqvkf~~e~F~rlrp- 338 (758)
T KOG0343|consen 289 QQSY-----------------------VI---VPLEDKIDMLWSFIKSH---LKKKSIVFLSSCKQVKFLYEAFCRLRP- 338 (758)
T ss_pred hheE-----------------------EE---EehhhHHHHHHHHHHhc---cccceEEEEehhhHHHHHHHHHHhcCC-
Confidence 1100 00 00156888888888765 356899999999999999999987631
Q ss_pred cccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCCCC
Q 000380 451 ASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQ 529 (1601)
Q Consensus 451 ~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g~ 529 (1601)
+ ..+.++|| .|++..|.++..+|-....-||+||+++++|+|+|.+|+||.+|.|.++.+||||+|| ||.+.
T Consensus 339 -g---~~l~~L~G---~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~ 411 (758)
T KOG0343|consen 339 -G---IPLLALHG---TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKE 411 (758)
T ss_pred -C---Cceeeecc---chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccC
Confidence 1 12667777 4999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred CeEEEEE
Q 000380 530 SEYAFLV 536 (1601)
Q Consensus 530 s~~vilv 536 (1601)
+|.++++
T Consensus 412 ~G~sll~ 418 (758)
T KOG0343|consen 412 RGESLLM 418 (758)
T ss_pred CCceEEE
Confidence 9988743
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=312.49 Aligned_cols=318 Identities=20% Similarity=0.242 Sum_probs=231.7
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCChhHHHHHHHHHHHHc----CC
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK--PQKSICIFLAPTVALVQQQAKVIEESI----GF 131 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~--~~~~~vl~LvPt~~Lv~Q~~~~l~~~~----~l 131 (1601)
..+.|...+..++. +|+++.+-||+|||+++++|+.++....+. .++-.++|||||++|+.|.+.+.++.+ ++
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 67889999999998 999999999999999999999765443321 234579999999999999998887754 57
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-ccCccceeEEEEecCccccccCCCh-HHHHHHHHcCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-FIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKP 209 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~ 209 (1601)
.+..+.|+.+......... .+++|+|+||++|++.+.+. .+-..+++++|+|||+++++.|... ..+|++.+
T Consensus 185 ~v~~viGG~~~~~e~~kl~---k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l--- 258 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLV---KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL--- 258 (543)
T ss_pred ceEEEeCCccchHHHHHhh---ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhc---
Confidence 8999999987644443333 37999999999999998865 3345667899999999998777432 34454443
Q ss_pred CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhc-cCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhH
Q 000380 210 DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLL-DAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l-~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (1601)
+ ...+-+..|||- +..++.|.... .. +|. .+.........
T Consensus 259 -p-k~rqt~LFSAT~------------~~kV~~l~~~~L~~----------------d~~--~v~~~d~~~~~------- 299 (543)
T KOG0342|consen 259 -P-KQRQTLLFSATQ------------PSKVKDLARGALKR----------------DPV--FVNVDDGGERE------- 299 (543)
T ss_pred -c-ccceeeEeeCCC------------cHHHHHHHHHhhcC----------------Cce--EeecCCCCCcc-------
Confidence 2 345677788874 33444543321 11 010 00000000000
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCch
Q 000380 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368 (1601)
Q Consensus 289 ~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 368 (1601)
+.+
T Consensus 300 -----------------------------------------------------------------------------The 302 (543)
T KOG0342|consen 300 -----------------------------------------------------------------------------THE 302 (543)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred HHHH-HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 369 SLCR-FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 369 ~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
.+.+ |+ -. ....++..|..+|++.. ...++||||.+...+..++.+|+..
T Consensus 303 ~l~Qgyv--------------------------v~-~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~ 353 (543)
T KOG0342|consen 303 RLEQGYV--------------------------VA-PSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYI 353 (543)
T ss_pred cccceEE--------------------------ec-cccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhc
Confidence 0000 00 00 00234566777777653 2379999999999999999999965
Q ss_pred ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CC
Q 000380 448 KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526 (1601)
Q Consensus 448 ~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR 526 (1601)
... +..+|++ +++..|..+..+|++.+.-|||||||+++|+|+|++++||+||+|.++.+||||+|| ||
T Consensus 354 dlp-------v~eiHgk---~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR 423 (543)
T KOG0342|consen 354 DLP-------VLEIHGK---QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAR 423 (543)
T ss_pred CCc-------hhhhhcC---CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccc
Confidence 432 4557774 899999999999999999999999999999999999999999999999999999999 79
Q ss_pred CCCCeEEEEEe
Q 000380 527 MPQSEYAFLVD 537 (1601)
Q Consensus 527 ~g~s~~vilv~ 537 (1601)
.|..|..+|+-
T Consensus 424 ~gk~G~alL~l 434 (543)
T KOG0342|consen 424 EGKEGKALLLL 434 (543)
T ss_pred cCCCceEEEEe
Confidence 99999988654
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=298.14 Aligned_cols=333 Identities=21% Similarity=0.310 Sum_probs=243.5
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHH---HHHHHcCCcE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAK---VIEESIGFKV 133 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~---~l~~~~~l~v 133 (1601)
.|.|.|.+.+..++. +|+++.+-.|+|||-++++|+++. .-.....-.++++|||++|+-|..+ ++.++++++|
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lek--id~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~v 184 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEK--IDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKV 184 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhhhh--cCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEE
Confidence 377899999999999 999999999999999999998552 2222223478999999999988554 4566789999
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCC
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK 213 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~ 213 (1601)
...+|+.+...+. .+.-+..+++|+||++++++...+.-.+++..++|+|||+.++. ..|..++..+....+ +
T Consensus 185 mvttGGT~lrDDI---~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs---~~F~~~~e~li~~lP-~ 257 (459)
T KOG0326|consen 185 MVTTGGTSLRDDI---MRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS---VDFQPIVEKLISFLP-K 257 (459)
T ss_pred EEecCCcccccce---eeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhc---hhhhhHHHHHHHhCC-c
Confidence 9999998754442 22234689999999999999999988999999999999999973 446666665544333 3
Q ss_pred CCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHH
Q 000380 214 VPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLA 293 (1601)
Q Consensus 214 ~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (1601)
.++++..|||-- -+ +.. -+.++..+|.+.-.
T Consensus 258 ~rQillySATFP--------~t----Vk~----------------Fm~~~l~kPy~INL--------------------- 288 (459)
T KOG0326|consen 258 ERQILLYSATFP--------LT----VKG----------------FMDRHLKKPYEINL--------------------- 288 (459)
T ss_pred cceeeEEecccc--------hh----HHH----------------HHHHhccCcceeeh---------------------
Confidence 478999999841 11 111 11223333321100
Q ss_pred HHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHH
Q 000380 294 EIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRF 373 (1601)
Q Consensus 294 ~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 373 (1601)
+++|.+.+ +.+|
T Consensus 289 --------------------------------------M~eLtl~G------------------------------vtQy 300 (459)
T KOG0326|consen 289 --------------------------------------MEELTLKG------------------------------VTQY 300 (459)
T ss_pred --------------------------------------hhhhhhcc------------------------------hhhh
Confidence 01111111 1111
Q ss_pred HHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccccc
Q 000380 374 ASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453 (1601)
Q Consensus 374 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~ 453 (1601)
.. .+. -+.|+..|-.++..... .++|||||+...++.|+..+.+++..
T Consensus 301 Ya-----------------------fV~---e~qKvhCLntLfskLqI---NQsIIFCNS~~rVELLAkKITelGys--- 348 (459)
T KOG0326|consen 301 YA-----------------------FVE---ERQKVHCLNTLFSKLQI---NQSIIFCNSTNRVELLAKKITELGYS--- 348 (459)
T ss_pred ee-----------------------eec---hhhhhhhHHHHHHHhcc---cceEEEeccchHhHHHHHHHHhccch---
Confidence 10 000 05677777777766532 37999999999999999999988653
Q ss_pred ccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeE
Q 000380 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEY 532 (1601)
Q Consensus 454 ~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~ 532 (1601)
| .-+|+ .|.++.|..++..||+|.++.||||+.+.+|||++++|+||+||.|.+.++|+||+||+ |.|.-|.
T Consensus 349 -c---yyiHa---kM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl 421 (459)
T KOG0326|consen 349 -C---YYIHA---KMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL 421 (459)
T ss_pred -h---hHHHH---HHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce
Confidence 1 12455 69999999999999999999999999999999999999999999999999999999995 9999999
Q ss_pred EE-EEeCCCHhHHHHHHHHHHhHHHHHHHh
Q 000380 533 AF-LVDSGNQRELDLIKNFSKEEDRMNREI 561 (1601)
Q Consensus 533 vi-lv~~~~~~~~~~i~~~~~~e~~l~~~~ 561 (1601)
++ +++-++...+. +.|+.+..++
T Consensus 422 AInLityedrf~L~------~IE~eLGtEI 445 (459)
T KOG0326|consen 422 AINLITYEDRFNLY------RIEQELGTEI 445 (459)
T ss_pred EEEEEehhhhhhHH------HHHHHhcccc
Confidence 98 77766654333 3444555444
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=300.73 Aligned_cols=335 Identities=21% Similarity=0.288 Sum_probs=240.7
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc------CCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR------KPQKSICIFLAPTVALVQQQAKVIEESI- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~------~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~- 129 (1601)
.|.|.|.++++.+++ .|+|.++.||+|||++++++- +.++.. ...+..+|++.||++|+.|..-+..++.
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg--~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy 319 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPG--FIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY 319 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccc--eeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh
Confidence 478899999999999 999999999999999999885 322221 2235689999999999999888777653
Q ss_pred -CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHc
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFY 207 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~ 207 (1601)
+++..+++|+.+...+.+.+++ +.+|+++||++|.++...+.+++..+.+||+|||+++++++..| .++||-...
T Consensus 320 ng~ksvc~ygggnR~eqie~lkr---gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKR---GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR 396 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhc---CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC
Confidence 7888888888776666555554 78999999999999999999999999999999999999988776 445555442
Q ss_pred CCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhh
Q 000380 208 KPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (1601)
+-.+.+.-||| ++..+.+|... |...|.+..+---... .
T Consensus 397 -----PDRqtvmTSAT------------WP~~VrrLa~s----------------Y~Kep~~v~vGsLdL~----a---- 435 (629)
T KOG0336|consen 397 -----PDRQTVMTSAT------------WPEGVRRLAQS----------------YLKEPMIVYVGSLDLV----A---- 435 (629)
T ss_pred -----Ccceeeeeccc------------CchHHHHHHHH----------------hhhCceEEEeccccee----e----
Confidence 12345555555 56666666432 2233322211000000 0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCc
Q 000380 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTID 367 (1601)
Q Consensus 288 ~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 367 (1601)
.
T Consensus 436 -------------------------------------------------------------------------~------ 436 (629)
T KOG0336|consen 436 -------------------------------------------------------------------------V------ 436 (629)
T ss_pred -------------------------------------------------------------------------e------
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 368 DSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 368 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
.++.+++ .+ +.-+.|+.....++... ..+.|+||||.++..|+-|+.-|.-.
T Consensus 437 ~sVkQ~i------------------------~v--~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~ 488 (629)
T KOG0336|consen 437 KSVKQNI------------------------IV--TTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLK 488 (629)
T ss_pred eeeeeeE------------------------Ee--cccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhc
Confidence 0000000 00 00033444444444443 35679999999999999888777644
Q ss_pred ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CC
Q 000380 448 KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526 (1601)
Q Consensus 448 ~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR 526 (1601)
++. .-++|++ .++.+|+..++.|++|+++|||||+++++|+|+|++.+|++||.|.|...|+||+|| +|
T Consensus 489 gi~-------~q~lHG~---r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR 558 (629)
T KOG0336|consen 489 GIS-------SQSLHGN---REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR 558 (629)
T ss_pred ccc-------hhhccCC---hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccccc
Confidence 332 3356764 788889999999999999999999999999999999999999999999999999999 59
Q ss_pred CCCCeEEE-EEeCCCHhH-HHHHHHHHHhHH
Q 000380 527 MPQSEYAF-LVDSGNQRE-LDLIKNFSKEED 555 (1601)
Q Consensus 527 ~g~s~~vi-lv~~~~~~~-~~~i~~~~~~e~ 555 (1601)
.|+.|..+ ++...+... .++|+-+.+.++
T Consensus 559 aGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ 589 (629)
T KOG0336|consen 559 AGRTGTSISFLTRNDWSMAEELIQILERAEQ 589 (629)
T ss_pred CCCCcceEEEEehhhHHHHHHHHHHHHHhhh
Confidence 99999888 777666543 334444444444
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=343.10 Aligned_cols=314 Identities=19% Similarity=0.276 Sum_probs=215.7
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRT 135 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~ 135 (1601)
..+|++|.++++.+++ +|+++++|||+|||++|++|+.. . .+.+|||+|+++|+.||.+.++.. ++.+..
T Consensus 24 ~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~--~------~g~tlVisPl~sL~~dqv~~l~~~-gi~~~~ 94 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV--L------DGLTLVVSPLISLMKDQVDQLLAN-GVAAAC 94 (607)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH--c------CCCEEEEecHHHHHHHHHHHHHHc-CCcEEE
Confidence 3589999999999999 89999999999999999999742 1 346999999999999999999874 788888
Q ss_pred EeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC---hHHHHHHHHcCCCC
Q 000380 136 FCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH---PYAKIMKDFYKPDI 211 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~---~~~~i~~~~~~~~~ 211 (1601)
+.+..........+.... ...+++++||+.+........+...++++|||||||++.+++.. .|..+- .+....
T Consensus 95 ~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~-~l~~~~- 172 (607)
T PRK11057 95 LNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALG-QLRQRF- 172 (607)
T ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHH-HHHHhC-
Confidence 777765433333333222 24689999999987422222334557899999999999876543 133332 111111
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQ 291 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1601)
+..++++||||+.... ...+...++ ...|......+... ..
T Consensus 173 -p~~~~v~lTAT~~~~~-----------~~di~~~l~---------------l~~~~~~~~~~~r~--nl---------- 213 (607)
T PRK11057 173 -PTLPFMALTATADDTT-----------RQDIVRLLG---------------LNDPLIQISSFDRP--NI---------- 213 (607)
T ss_pred -CCCcEEEEecCCChhH-----------HHHHHHHhC---------------CCCeEEEECCCCCC--cc----------
Confidence 2245889999983221 111111111 01111110000000 00
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHH
Q 000380 292 LAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC 371 (1601)
Q Consensus 292 l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 371 (1601)
T Consensus 214 -------------------------------------------------------------------------------- 213 (607)
T PRK11057 214 -------------------------------------------------------------------------------- 213 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccc
Q 000380 372 RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLA 451 (1601)
Q Consensus 372 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~ 451 (1601)
.|. .... ..+...+...+.. ..+.++||||+++..++.++..|+..+..
T Consensus 214 ~~~------------------------v~~~---~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~~g~~- 262 (607)
T PRK11057 214 RYT------------------------LVEK---FKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSRGIS- 262 (607)
T ss_pred eee------------------------eeec---cchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCC-
Confidence 000 0000 0112223333332 24568999999999999999999876432
Q ss_pred ccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCC
Q 000380 452 SWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQS 530 (1601)
Q Consensus 452 ~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s 530 (1601)
+..+|+ +|+.++|.++++.|++|+++|||||+++++|||+|++++||+||.|.|..+|+||+||| |.|..
T Consensus 263 ------v~~~Ha---~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~ 333 (607)
T PRK11057 263 ------AAAYHA---GLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (607)
T ss_pred ------EEEecC---CCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCC
Confidence 445676 49999999999999999999999999999999999999999999999999999999996 99998
Q ss_pred eEEE-EEeCCC
Q 000380 531 EYAF-LVDSGN 540 (1601)
Q Consensus 531 ~~vi-lv~~~~ 540 (1601)
+.++ ++...+
T Consensus 334 ~~~ill~~~~d 344 (607)
T PRK11057 334 AEAMLFYDPAD 344 (607)
T ss_pred ceEEEEeCHHH
Confidence 8877 444433
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=307.79 Aligned_cols=364 Identities=21% Similarity=0.312 Sum_probs=236.6
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHH----hcCCCCcEEEEEeCChhHHHHHHHHHHHHcC---
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHL----IRKPQKSICIFLAPTVALVQQQAKVIEESIG--- 130 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~----~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~--- 130 (1601)
|...|.++++.+++ +|++|.++||||||++|++||.+.... +.+..|.-+||||||++||.|.++.+++...
T Consensus 160 pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred cchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCce
Confidence 77899999999999 999999999999999999999542221 2234577899999999999999999999763
Q ss_pred -CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-ccCccceeEEEEecCccccccCCCh-HHHHHHHHc
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-FIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFY 207 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~ 207 (1601)
+-.+.+.||......++.+++ +.+|+|+||++|++.|.+. .+.++++.+|||||++++++.|... ...|++..-
T Consensus 240 WIVPg~lmGGEkkKSEKARLRK---GiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRK---GINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVH 316 (708)
T ss_pred EEeeceeecccccccHHHHHhc---CceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHh
Confidence 345556677666566666665 8999999999999988765 6778999999999999998777543 455666542
Q ss_pred CCC----C-CCCC---EEEEEeccccCCCCCccccchHHHHHHHHHh-ccCeEEeecCHHHHhcccCCCeEEEEEecCCC
Q 000380 208 KPD----I-MKVP---RIFGMTASPVVGKGASAQANLPKSINSLENL-LDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278 (1601)
Q Consensus 208 ~~~----~-~~~p---~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~-l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 278 (1601)
... . ...| +-+.||||.. ..+..|..+ |+..++.-.|.... ..+|...
T Consensus 317 ~~~~~e~~~~~lp~q~q~mLlSATLt------------d~V~rLa~~sLkDpv~I~ld~s~~---~~~p~~~-------- 373 (708)
T KOG0348|consen 317 SIQNAECKDPKLPHQLQNMLLSATLT------------DGVNRLADLSLKDPVYISLDKSHS---QLNPKDK-------- 373 (708)
T ss_pred hccchhcccccccHHHHhHhhhhhhH------------HHHHHHhhccccCceeeeccchhh---hcCcchh--------
Confidence 211 1 1122 3456778753 344455432 22111111111000 0000000
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHH
Q 000380 279 NDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNEL 358 (1601)
Q Consensus 279 ~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l 358 (1601)
.+.++. -|+.+ +.
T Consensus 374 ------------a~~ev~--------------------------------------~~~~~-----------~~------ 386 (708)
T KOG0348|consen 374 ------------AVQEVD--------------------------------------DGPAG-----------DK------ 386 (708)
T ss_pred ------------hhhhcC--------------------------------------Ccccc-----------cc------
Confidence 000000 00000 00
Q ss_pred HHhhcCCCchHHH-HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHh-hcccCCCceEEEEecchhh
Q 000380 359 IEAEGNTIDDSLC-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILS-TFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 359 ~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~-~~~~~~~~k~IIFv~~r~~ 436 (1601)
+ +.....+.+. +|. .++ ..-++-.|..+|. .+......++|||+.+.+.
T Consensus 387 l--~~~~iPeqL~qry~------------------------vVP---pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~ 437 (708)
T KOG0348|consen 387 L--DSFAIPEQLLQRYT------------------------VVP---PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDS 437 (708)
T ss_pred c--ccccCcHHhhhceE------------------------ecC---CchhHHHHHHHHHHHhhhhhhceeEEEEechhH
Confidence 0 0000000000 110 000 0123334444443 2223345599999999999
Q ss_pred HHHHHHHHHhcccc-----------cc----cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCC
Q 000380 437 ARALSYILQNLKFL-----------AS----WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQ 501 (1601)
Q Consensus 437 a~~L~~~L~~~~~~-----------~~----~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip 501 (1601)
++.-+.+|...... .+ +.-..+..+||+ |++++|..+++.|+..+--||+||||+++|+|+|
T Consensus 438 VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs---m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP 514 (708)
T KOG0348|consen 438 VEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS---MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLP 514 (708)
T ss_pred HHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc---hhHHHHHHHHHhhccccceEEEehhhhhccCCCC
Confidence 99888887753211 01 111235567874 9999999999999998888999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhc-CCCCCCeEEEEE-eCCCHhHHHHH
Q 000380 502 TCCLVIRFDLPETVASFIQSRGR-ARMPQSEYAFLV-DSGNQRELDLI 547 (1601)
Q Consensus 502 ~~~~VI~fd~p~s~~~yiQr~GR-AR~g~s~~vilv-~~~~~~~~~~i 547 (1601)
.+.+||.||.|.++.+|+||+|| ||+|..|-++|+ .+.+.+..+.+
T Consensus 515 ~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 515 HVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred CcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 99999999999999999999999 799999988754 44444433333
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=315.08 Aligned_cols=342 Identities=21% Similarity=0.294 Sum_probs=229.1
Q ss_pred hhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcC-------------CCCcEEEEEeCChhHHHHHH
Q 000380 58 IARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-------------PQKSICIFLAPTVALVQQQA 122 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~-------------~~~~~vl~LvPt~~Lv~Q~~ 122 (1601)
.|.+.|.-.+..+++ .|++.+++||||||++|.+||.+ ++... ......||++|||+||.|..
T Consensus 203 ~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~--~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVE--RLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CCccchhhcccHhhccchhcccccccCCCceeeecchhhh--hhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 367788889999988 69999999999999999999954 22211 12335999999999999987
Q ss_pred HHHHH---HcCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcccc---CccceeEEEEecCccccccCC
Q 000380 123 KVIEE---SIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI---KMELIALLIFDECHHAQVKSN 196 (1601)
Q Consensus 123 ~~l~~---~~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~---~l~~i~llI~DEaH~~~~~~~ 196 (1601)
+.|.. .+++++..++||.....+.+.++. .++|||+||++|+.++..+.. +++++++||+||++++.++|.
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~---~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ---RPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhc---CCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 77655 568999999999987666666554 689999999999999887633 478899999999999987553
Q ss_pred C-hHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEec
Q 000380 197 H-PYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYG 275 (1601)
Q Consensus 197 ~-~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 275 (1601)
. ....+++.+.........+.|..|||..-.... .+......-+.
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~--------~~~~~~k~~~k-------------------------- 403 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ--------PLSSSRKKKDK-------------------------- 403 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcC--------hhHHhhhccch--------------------------
Confidence 2 256677766533333445778889997322111 00000000000
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHH
Q 000380 276 PVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMR 355 (1601)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~ 355 (1601)
...+.+. +...++.+|..+..
T Consensus 404 ---------~~~~~~k------------------------------------iq~Lmk~ig~~~kp-------------- 424 (731)
T KOG0347|consen 404 ---------EDELNAK------------------------------------IQHLMKKIGFRGKP-------------- 424 (731)
T ss_pred ---------hhhhhHH------------------------------------HHHHHHHhCccCCC--------------
Confidence 0000000 00111112211100
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchh
Q 000380 356 NELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIV 435 (1601)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~ 435 (1601)
.+++... ......-+ .+.+ -.|.. ..|-..|.-+|..| .+++|||||++.
T Consensus 425 -kiiD~t~---q~~ta~~l---~Es~-I~C~~------------------~eKD~ylyYfl~ry----PGrTlVF~NsId 474 (731)
T KOG0347|consen 425 -KIIDLTP---QSATASTL---TESL-IECPP------------------LEKDLYLYYFLTRY----PGRTLVFCNSID 474 (731)
T ss_pred -eeEecCc---chhHHHHH---HHHh-hcCCc------------------cccceeEEEEEeec----CCceEEEechHH
Confidence 0000000 00000000 0000 00100 01111111122222 469999999999
Q ss_pred hHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCH
Q 000380 436 TARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515 (1601)
Q Consensus 436 ~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~ 515 (1601)
.+..|+-+|+.+... ...+|+ .|.+++|...+++|++...-|||||||+++|+|||++.+||||-.|.+.
T Consensus 475 ~vKRLt~~L~~L~i~-------p~~LHA---~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrts 544 (731)
T KOG0347|consen 475 CVKRLTVLLNNLDIP-------PLPLHA---SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTS 544 (731)
T ss_pred HHHHHHHHHhhcCCC-------CchhhH---HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCcc
Confidence 999999999987653 234677 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CCCCCCeEEEEEe
Q 000380 516 ASFIQSRGR-ARMPQSEYAFLVD 537 (1601)
Q Consensus 516 ~~yiQr~GR-AR~g~s~~vilv~ 537 (1601)
.-|+||.|| ||++..|..+|+.
T Consensus 545 eiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 545 EIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred ceeEecccccccccCCCeEEEEe
Confidence 999999999 7999999988654
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=356.67 Aligned_cols=338 Identities=20% Similarity=0.246 Sum_probs=214.9
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC------CCCcEEEEEeCChhHHHHHHHHHHH---
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK------PQKSICIFLAPTVALVQQQAKVIEE--- 127 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~------~~~~~vl~LvPt~~Lv~Q~~~~l~~--- 127 (1601)
.|+++|.++++.+++ +|+|+++|||||||++|.+++.. ++... ..+.++|+|+|+++|+.|+++.+..
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~--~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~ 109 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIID--ELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLT 109 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHH--HHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 489999999999988 89999999999999999999843 33321 2345799999999999999876542
Q ss_pred ----Hc--------CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcccc--CccceeEEEEecCccccc
Q 000380 128 ----SI--------GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI--KMELIALLIFDECHHAQV 193 (1601)
Q Consensus 128 ----~~--------~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~--~l~~i~llI~DEaH~~~~ 193 (1601)
.. ++++...+|+.....+..... ..++|+|+||++|..++....+ .+.++++|||||||++.+
T Consensus 110 ~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~---~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 110 EIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK---KPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh---CCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 21 567888999976433222222 3589999999999877765433 378899999999999974
Q ss_pred cCCCh-HHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEE
Q 000380 194 KSNHP-YAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVY 272 (1601)
Q Consensus 194 ~~~~~-~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~ 272 (1601)
.+... +...+..+.... ...++++|||||+.+ .+.+...+...... ...++. .++
T Consensus 187 ~~RG~~l~~~L~rL~~l~-~~~~q~IglSATl~~-------------~~~va~~L~~~~~~---------~~~r~~-~iv 242 (876)
T PRK13767 187 NKRGVHLSLSLERLEELA-GGEFVRIGLSATIEP-------------LEEVAKFLVGYEDD---------GEPRDC-EIV 242 (876)
T ss_pred CccHHHHHHHHHHHHHhc-CCCCeEEEEecccCC-------------HHHHHHHhcCcccc---------CCCCce-EEE
Confidence 33332 233333332221 235789999999732 12222222211000 000110 000
Q ss_pred EecCCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCch
Q 000380 273 QYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDE 352 (1601)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~ 352 (1601)
... ........ . .+. ..
T Consensus 243 ~~~-~~k~~~i~-----------------------v-----------------------------~~p---------~~- 259 (876)
T PRK13767 243 DAR-FVKPFDIK-----------------------V-----------------------------ISP---------VD- 259 (876)
T ss_pred ccC-CCccceEE-----------------------E-----------------------------ecc---------Cc-
Confidence 000 00000000 0 000 00
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEec
Q 000380 353 TMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVN 432 (1601)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~ 432 (1601)
.+.... ..... ......|.+++. .+.++||||+
T Consensus 260 ----~l~~~~----~~~~~----------------------------------~~l~~~L~~~i~-----~~~~~LVF~n 292 (876)
T PRK13767 260 ----DLIHTP----AEEIS----------------------------------EALYETLHELIK-----EHRTTLIFTN 292 (876)
T ss_pred ----cccccc----cchhH----------------------------------HHHHHHHHHHHh-----cCCCEEEEeC
Confidence 000000 00000 011122223332 2458999999
Q ss_pred chhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCC
Q 000380 433 RIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP 512 (1601)
Q Consensus 433 ~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p 512 (1601)
++..|+.++..|....... +. ...++.|+| ++++++|..++++|++|++++||||+++++|||+|++++||++|.|
T Consensus 293 Tr~~ae~la~~L~~~~~~~-~~-~~~i~~hHg--~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P 368 (876)
T PRK13767 293 TRSGAERVLYNLRKRFPEE-YD-EDNIGAHHS--SLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSP 368 (876)
T ss_pred CHHHHHHHHHHHHHhchhh-cc-ccceeeeeC--CCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCC
Confidence 9999999999998642110 01 123444444 6999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhcC-CCCC---CeEEEEEeC
Q 000380 513 ETVASFIQSRGRA-RMPQ---SEYAFLVDS 538 (1601)
Q Consensus 513 ~s~~~yiQr~GRA-R~g~---s~~vilv~~ 538 (1601)
.+..+|+||+||| |.++ .+.++..+.
T Consensus 369 ~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 369 KSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999996 6643 355555443
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=307.82 Aligned_cols=353 Identities=22% Similarity=0.322 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHhc----------cCEEEEecCchhHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 60 RKYQLELCKKAME----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 60 R~yQ~e~~~~~l~----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~-~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
-|.|..++..++. +|+.|.+|||||||++|++||.. -+..++ +.-|++||+||++|+.|.+.+|.++
T Consensus 161 FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ--~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 161 FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ--LLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH--HHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 3678777776644 68999999999999999999944 333332 2358999999999999999999998
Q ss_pred c---CCcEEEEeCCCCcCCchhhHHhhhc--cCeEEEEcHHHHHHHHh-ccccCccceeEEEEecCccccccCCChHHH-
Q 000380 129 I---GFKVRTFCGGSKRLKSHCDWEKEID--QYEVLVMIPQILLYCLY-HRFIKMELIALLIFDECHHAQVKSNHPYAK- 201 (1601)
Q Consensus 129 ~---~l~v~~~~G~~~~~~~~~~~~~~~~--~~~VlV~Tp~~l~~~l~-~~~~~l~~i~llI~DEaH~~~~~~~~~~~~- 201 (1601)
. |+.|+.+.|..+.......+..... ..||+|+||++|.+.++ ...+.++++.++|||||+++++.....|..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 6 6888888888764433333332211 24999999999999998 457889999999999999997544444443
Q ss_pred HHHHHcCCCC-CCCCEEEEEec--cccCCCCCccc-cchHHHHHHHHHhccCeEEeecCHHHHhcc-cCCCeEEEEEecC
Q 000380 202 IMKDFYKPDI-MKVPRIFGMTA--SPVVGKGASAQ-ANLPKSINSLENLLDAKVYSVEDAEDLESF-VSSPVVRVYQYGP 276 (1601)
Q Consensus 202 i~~~~~~~~~-~~~p~ilgLTA--TP~~~~~~~~~-~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~-~~~p~~~~~~~~~ 276 (1601)
+|...-.... .....||-+.- +|......... ..++. .|..++-+...+ .+...+..+ +..|....+. .|
T Consensus 319 v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~---~l~kL~~satLs-qdP~Kl~~l~l~~Prl~~v~-~~ 393 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYP---PLWKLVFSATLS-QDPSKLKDLTLHIPRLFHVS-KP 393 (620)
T ss_pred HHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCc---hhHhhhcchhhh-cChHHHhhhhcCCCceEEee-cc
Confidence 3433322110 00111222211 22100000000 00000 011111110000 111111111 1222211111 00
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHH
Q 000380 277 VINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRN 356 (1601)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~ 356 (1601)
.. |.+.
T Consensus 394 ~~---------------------------------------------------------~rys----------------- 399 (620)
T KOG0350|consen 394 LI---------------------------------------------------------GRYS----------------- 399 (620)
T ss_pred cc---------------------------------------------------------eeee-----------------
Confidence 00 0000
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhh
Q 000380 357 ELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 357 ~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~ 436 (1601)
....+.++. ...+. .-|...+..++... +..++|+|+++...
T Consensus 400 ---------lp~~l~~~~------------------------vv~~~--~~kpl~~~~lI~~~---k~~r~lcf~~S~~s 441 (620)
T KOG0350|consen 400 ---------LPSSLSHRL------------------------VVTEP--KFKPLAVYALITSN---KLNRTLCFVNSVSS 441 (620)
T ss_pred ---------cChhhhhce------------------------eeccc--ccchHhHHHHHHHh---hcceEEEEecchHH
Confidence 000000000 00000 11333344444433 45699999999999
Q ss_pred HHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHH
Q 000380 437 ARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516 (1601)
Q Consensus 437 a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~ 516 (1601)
+..|++.|+-.-.....+...+ .+ +++.+.|.+.+++|+.|++++|||||++++|||+.+++.||+||+|.+..
T Consensus 442 a~Rl~~~L~v~~~~~~~~~s~~---t~---~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 442 ANRLAHVLKVEFCSDNFKVSEF---TG---QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred HHHHHHHHHHHhccccchhhhh---hh---hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 9999999983211111222222 22 58889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCCCeEEE-EEe
Q 000380 517 SFIQSRGR-ARMPQSEYAF-LVD 537 (1601)
Q Consensus 517 ~yiQr~GR-AR~g~s~~vi-lv~ 537 (1601)
+|+||+|| ||+|+.|+++ ++.
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred HHHHhhcccccccCCceEEEeec
Confidence 99999999 7999999998 444
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=328.42 Aligned_cols=324 Identities=17% Similarity=0.172 Sum_probs=217.0
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC---Cc
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG---FK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~---l~ 132 (1601)
..||+||.+++..+++ ++.|+++|||+|||+++..++..+ .. ..+.++||||||++|+.||.+.++++.. ..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~---~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYY---LE-NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH---Hh-cCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 5799999999999888 789999999999999887654322 11 2233899999999999999999998763 23
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~ 212 (1601)
+..+.|+.... .+.+|+|+|+|.+.+... ..++++++||+|||||+. ...+..++..+-
T Consensus 189 ~~~i~~g~~~~----------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~---~~~~~~il~~~~----- 247 (501)
T PHA02558 189 MHKIYSGTAKD----------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFT---GKSLTSIITKLD----- 247 (501)
T ss_pred eeEEecCcccC----------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhccc---chhHHHHHHhhh-----
Confidence 44455554321 247899999999876432 235789999999999995 234777776651
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHh-cccCCCeEEEEEecCCCCCCCchhhhHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLE-SFVSSPVVRVYQYGPVINDTSSSYVTCSEQ 291 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1601)
+.++++||||||..+... ...+...++...+.++..+.+. .+...+....+...... . .
T Consensus 248 ~~~~~lGLTATp~~~~~~---------~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~-----~------~ 307 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKAN---------ILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPD-----E------D 307 (501)
T ss_pred ccceEEEEeccCCCcccc---------HHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCH-----H------H
Confidence 246799999999544321 2234445665555543332222 23333333222111000 0 0
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHH
Q 000380 292 LAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC 371 (1601)
Q Consensus 292 l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 371 (1601)
...+... .|.. ..
T Consensus 308 ~~~~~~~--------------------------------------~~~~-----------------------------~~ 320 (501)
T PHA02558 308 RVKLKGE--------------------------------------DYQE-----------------------------EI 320 (501)
T ss_pred hhhhccc--------------------------------------chHH-----------------------------HH
Confidence 0000000 0000 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccc
Q 000380 372 RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLA 451 (1601)
Q Consensus 372 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~ 451 (1601)
.++ .. ...+...+.+++.... ..+.++||||+++.+++.|++.|+..+.
T Consensus 321 ~~l-------~~---------------------~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~-- 369 (501)
T PHA02558 321 KYI-------TS---------------------HTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYD-- 369 (501)
T ss_pred HHH-------hc---------------------cHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCC--
Confidence 000 00 0112222333332221 2456899999999999999999998543
Q ss_pred ccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEe-cccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCC
Q 000380 452 SWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVAT-KVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQ 529 (1601)
Q Consensus 452 ~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT-~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~ 529 (1601)
.+..+|| +++.++|..+++.|++|+..+|||| ++++||+|+|++++||.++++.+...|+||+||+ |.+.
T Consensus 370 -----~v~~i~G---~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 370 -----KVYYVSG---EVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred -----CEEEEeC---CCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCC
Confidence 1455566 5999999999999999999999998 8999999999999999999999999999999996 9876
Q ss_pred Ce
Q 000380 530 SE 531 (1601)
Q Consensus 530 s~ 531 (1601)
++
T Consensus 442 ~K 443 (501)
T PHA02558 442 SK 443 (501)
T ss_pred CC
Confidence 65
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=341.32 Aligned_cols=309 Identities=19% Similarity=0.256 Sum_probs=219.9
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
.+|++|.++++.+++ +|+++++|||+|||++|++++.. .++.++||+|+++|+.||.+.++.. |+.+..+
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~--------~~g~~lVisPl~sL~~dq~~~l~~~-gi~~~~~ 83 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL--------LKGLTVVISPLISLMKDQVDQLRAA-GVAAAYL 83 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHc-CCcEEEE
Confidence 589999999999999 99999999999999999988732 1346899999999999999999874 8899889
Q ss_pred eCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC---hHHHHHHHHcCCCCC
Q 000380 137 CGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH---PYAKIMKDFYKPDIM 212 (1601)
Q Consensus 137 ~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~---~~~~i~~~~~~~~~~ 212 (1601)
.|+.........+.... ...+|+++||+.+.+......+...++++|||||||++..+|.. .|..+....... .
T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~--~ 161 (591)
T TIGR01389 84 NSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF--P 161 (591)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC--C
Confidence 88876544444444332 34799999999987544444556678999999999999876643 244443322111 1
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
..| ++++|||+... ....+...++. ..|......+... ...
T Consensus 162 ~~~-vi~lTAT~~~~-----------~~~~i~~~l~~---------------~~~~~~~~~~~r~--nl~---------- 202 (591)
T TIGR01389 162 QVP-RIALTATADAE-----------TRQDIRELLRL---------------ADANEFITSFDRP--NLR---------- 202 (591)
T ss_pred CCC-EEEEEeCCCHH-----------HHHHHHHHcCC---------------CCCCeEecCCCCC--CcE----------
Confidence 234 89999998321 11122222211 0010000000000 000
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
T Consensus 203 -------------------------------------------------------------------------------- 202 (591)
T TIGR01389 203 -------------------------------------------------------------------------------- 202 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccc
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~ 452 (1601)
..... ...+...+.+.+... .+.++||||+++..++.+++.|...+..
T Consensus 203 ------------------------~~v~~---~~~~~~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~~g~~-- 250 (591)
T TIGR01389 203 ------------------------FSVVK---KNNKQKFLLDYLKKH---RGQSGIIYASSRKKVEELAERLESQGIS-- 250 (591)
T ss_pred ------------------------EEEEe---CCCHHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHhCCCC--
Confidence 00000 012233344444432 2568999999999999999999875431
Q ss_pred cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCe
Q 000380 453 WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531 (1601)
Q Consensus 453 ~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~ 531 (1601)
+..+|++ |+.++|..++++|++|+++|||||+++++|||+|++++||+||+|.|..+|+|++||| |.|..+
T Consensus 251 -----~~~~H~~---l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~ 322 (591)
T TIGR01389 251 -----ALAYHAG---LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPA 322 (591)
T ss_pred -----EEEEECC---CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCc
Confidence 3445664 9999999999999999999999999999999999999999999999999999999996 999888
Q ss_pred EEEEE
Q 000380 532 YAFLV 536 (1601)
Q Consensus 532 ~vilv 536 (1601)
.++++
T Consensus 323 ~~il~ 327 (591)
T TIGR01389 323 EAILL 327 (591)
T ss_pred eEEEe
Confidence 87754
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-31 Score=343.18 Aligned_cols=332 Identities=19% Similarity=0.266 Sum_probs=225.5
Q ss_pred hhhhHHHHHHHHHHh-c-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH--cCCc
Q 000380 57 QIARKYQLELCKKAM-E-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES--IGFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l-~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~--~~l~ 132 (1601)
..++++|.++++..+ . +|+++++|||+|||++|.+++.. .+. .++++|||+|+++|+.|+++.++++ .|++
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~--~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLK--AIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHH--HHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 458899999999844 4 89999999999999999999843 332 3567999999999999999999876 3789
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~ 211 (1601)
+..++|+...... | +..++|+|+||+.+..+++++...+.++++||+||+|.+.+.+..+ +..++..+....
T Consensus 97 v~~~tGd~~~~~~---~---l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~- 169 (737)
T PRK02362 97 VGISTGDYDSRDE---W---LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN- 169 (737)
T ss_pred EEEEeCCcCcccc---c---cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-
Confidence 9999998654221 2 2458999999999998888765567899999999999996433333 444555543322
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQ 291 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1601)
...+++|||||+.+ ...+...+++..+... +-+.|....+.+..... .
T Consensus 170 -~~~qii~lSATl~n-------------~~~la~wl~~~~~~~~-------~rpv~l~~~v~~~~~~~-~---------- 217 (737)
T PRK02362 170 -PDLQVVALSATIGN-------------ADELADWLDAELVDSE-------WRPIDLREGVFYGGAIH-F---------- 217 (737)
T ss_pred -CCCcEEEEcccCCC-------------HHHHHHHhCCCcccCC-------CCCCCCeeeEecCCeec-c----------
Confidence 34789999999732 2345555554322110 00111111111100000 0
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHH
Q 000380 292 LAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC 371 (1601)
Q Consensus 292 l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 371 (1601)
. + ..
T Consensus 218 ---------------------------------------------------------~-~---~~--------------- 221 (737)
T PRK02362 218 ---------------------------------------------------------D-D---SQ--------------- 221 (737)
T ss_pred ---------------------------------------------------------c-c---cc---------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccc-
Q 000380 372 RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFL- 450 (1601)
Q Consensus 372 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~- 450 (1601)
.. +........+..+.+.+. .+.++||||+++..++.++..|......
T Consensus 222 ~~--------------------------~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~ 270 (737)
T PRK02362 222 RE--------------------------VEVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKT 270 (737)
T ss_pred cc--------------------------CCCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhc
Confidence 00 000000112222333332 3568999999999999988888653110
Q ss_pred -------------ccc--------------ccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCc
Q 000380 451 -------------ASW--------------RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTC 503 (1601)
Q Consensus 451 -------------~~~--------------~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~ 503 (1601)
..+ ....-+++|++ +|++.+|..+++.|++|.++|||||+++++|||+|+.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHa--gl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~ 348 (737)
T PRK02362 271 LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHA--GLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPAR 348 (737)
T ss_pred CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecC--CCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCce
Confidence 000 00123556665 6999999999999999999999999999999999999
Q ss_pred cEEEE----cC-----CCCCHHHHHHHhhcC-CCCCC--eEEEEEeCCCH
Q 000380 504 CLVIR----FD-----LPETVASFIQSRGRA-RMPQS--EYAFLVDSGNQ 541 (1601)
Q Consensus 504 ~~VI~----fd-----~p~s~~~yiQr~GRA-R~g~s--~~vilv~~~~~ 541 (1601)
++||+ || .|.+..+|+||+||| |.|.. |.++++.....
T Consensus 349 ~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 349 RVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred EEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 99997 77 588999999999997 98865 77887765543
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=312.77 Aligned_cols=335 Identities=24% Similarity=0.320 Sum_probs=232.6
Q ss_pred CCchhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 53 KDPKQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 53 ~~~~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
....+.+|+||.++++++.+ +..++++|||+|||++++..+..+ +..+|||||+.+|+.||++.+.+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHH
Confidence 34467799999999999987 468999999999999999887553 23399999999999999999999
Q ss_pred HcCCc--EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 128 SIGFK--VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 128 ~~~l~--v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
+++.. ++.+.|+..... ...|.|+|.|.+........+....+++||||||||+ +...|+.+...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~----------~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~---~a~~~~~~~~~ 169 (442)
T COG1061 103 FLLLNDEIGIYGGGEKELE----------PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHL---PAPSYRRILEL 169 (442)
T ss_pred hcCCccccceecCceeccC----------CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccC---CcHHHHHHHHh
Confidence 88764 666666544211 1369999999998642222334457999999999999 45668888887
Q ss_pred HcCCCCCCCCE-EEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHh-cccCCCeEEEEEecCCCCCCCc
Q 000380 206 FYKPDIMKVPR-IFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLE-SFVSSPVVRVYQYGPVINDTSS 283 (1601)
Q Consensus 206 ~~~~~~~~~p~-ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~-~~~~~p~~~~~~~~~~~~~~~~ 283 (1601)
+.. ++ +|||||||.+.+.. .+..+...++..++...-.+.+. .+...+....+.......+ ..
T Consensus 170 ~~~------~~~~LGLTATp~R~D~~--------~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~-~~ 234 (442)
T COG1061 170 LSA------AYPRLGLTATPEREDGG--------RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDE-ER 234 (442)
T ss_pred hhc------ccceeeeccCceeecCC--------chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHH-HH
Confidence 733 45 99999999865522 35677778888888887666666 4555555444433211000 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhc
Q 000380 284 SYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEG 363 (1601)
Q Consensus 284 ~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~ 363 (1601)
.+........ ..++. ....+.
T Consensus 235 ~~~~~~~~~~-------------------------~~~~~----------~~~~~~------------------------ 255 (442)
T COG1061 235 EYAKESARFR-------------------------ELLRA----------RGTLRA------------------------ 255 (442)
T ss_pred Hhhhhhhhhh-------------------------hhhhh----------hhhhhH------------------------
Confidence 0000000000 00000 000000
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHH
Q 000380 364 NTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYI 443 (1601)
Q Consensus 364 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~ 443 (1601)
.... .... .....|...+..++..+. .+.+++||+.++.++..++..
T Consensus 256 -------~~~~----~~~~--------------------~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~ 302 (442)
T COG1061 256 -------ENEA----RRIA--------------------IASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKL 302 (442)
T ss_pred -------HHHH----HHHh--------------------hccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHH
Confidence 0000 0000 001345666666666542 567999999999999999999
Q ss_pred HHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhh
Q 000380 444 LQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523 (1601)
Q Consensus 444 L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~G 523 (1601)
+...+. +..+ .+ +.+..+|..++++|+.|++++||++.++.||+|+|+++++|......|...|+||+|
T Consensus 303 ~~~~~~-----~~~i---t~---~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lG 371 (442)
T COG1061 303 FLAPGI-----VEAI---TG---ETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLG 371 (442)
T ss_pred hcCCCc-----eEEE---EC---CCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhh
Confidence 876432 1122 22 589999999999999999999999999999999999999999999999999999999
Q ss_pred cC-C
Q 000380 524 RA-R 526 (1601)
Q Consensus 524 RA-R 526 (1601)
|+ |
T Consensus 372 R~LR 375 (442)
T COG1061 372 RGLR 375 (442)
T ss_pred hhcc
Confidence 98 8
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=289.81 Aligned_cols=336 Identities=23% Similarity=0.306 Sum_probs=239.0
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCChhHHHHHHHHHHHHc----
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLI----RKPQKSICIFLAPTVALVQQQAKVIEESI---- 129 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---- 129 (1601)
|.-.|..++.-+++ +|++..+.||||||.+|++|+.+..-.. ....+..++|||||++||.|.+.++.+..
T Consensus 42 pTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 42 PTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred cchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH
Confidence 66689999999999 9999999999999999999995532111 12235689999999999999999988754
Q ss_pred -CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc-cCccceeEEEEecCccccccCCChHHHHHHHHc
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF-IKMELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~ 207 (1601)
.+++.-++.++++.... .|. .+.++|+|+||..++.++..+. ..++.+.++|+|||+.++..| |..-|+...
T Consensus 122 k~lr~~nl~s~~sdsv~~-~~L--~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfG---Yeedlk~l~ 195 (569)
T KOG0346|consen 122 KDLRAINLASSMSDSVNS-VAL--MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFG---YEEDLKKLR 195 (569)
T ss_pred HhhhhhhhhcccchHHHH-HHH--ccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcc---cHHHHHHHH
Confidence 36777777776654443 443 3569999999999999998886 668889999999999997444 666666654
Q ss_pred CCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhh
Q 000380 208 KPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (1601)
...+ +..+-+.||||. .+.+..|..++. .+|.+....-.... ....
T Consensus 196 ~~LP-r~~Q~~LmSATl------------~dDv~~LKkL~l----------------~nPviLkl~e~el~--~~dq--- 241 (569)
T KOG0346|consen 196 SHLP-RIYQCFLMSATL------------SDDVQALKKLFL----------------HNPVILKLTEGELP--NPDQ--- 241 (569)
T ss_pred HhCC-chhhheeehhhh------------hhHHHHHHHHhc----------------cCCeEEEeccccCC--Cccc---
Confidence 4322 334568899985 345556655432 23322111000000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCc
Q 000380 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTID 367 (1601)
Q Consensus 288 ~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 367 (1601)
|.+ .-..|.
T Consensus 242 ----------------L~Q----------------------------y~v~cs--------------------------- 250 (569)
T KOG0346|consen 242 ----------------LTQ----------------------------YQVKCS--------------------------- 250 (569)
T ss_pred ----------------ceE----------------------------EEEEec---------------------------
Confidence 000 000000
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 368 DSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 368 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
-.+|+..+..+|+--. -.++.|||||+++.+..|.-+|...
T Consensus 251 -------------------------------------e~DKflllyallKL~L--I~gKsliFVNtIdr~YrLkLfLeqF 291 (569)
T KOG0346|consen 251 -------------------------------------EEDKFLLLYALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQF 291 (569)
T ss_pred -------------------------------------cchhHHHHHHHHHHHH--hcCceEEEEechhhhHHHHHHHHHh
Confidence 0234444444443211 1358999999999999999999986
Q ss_pred ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEec-----------------------------------
Q 000380 448 KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATK----------------------------------- 492 (1601)
Q Consensus 448 ~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~----------------------------------- 492 (1601)
|+. .. -+++ .++.+.|..++++|..|-..++||||
T Consensus 292 Gik----sc---iLNs---eLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~ 361 (569)
T KOG0346|consen 292 GIK----SC---ILNS---ELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKES 361 (569)
T ss_pred CcH----hh---hhcc---cccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchh
Confidence 652 11 2344 69999999999999999999999999
Q ss_pred ccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCCCCCeEEE-EEeCCCHhHHHHHHHHHHhH
Q 000380 493 VGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQSEYAF-LVDSGNQRELDLIKNFSKEE 554 (1601)
Q Consensus 493 vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g~s~~vi-lv~~~~~~~~~~i~~~~~~e 554 (1601)
-..+|||+..+++||+||+|.++.+||||+|| ||.+++|.++ |+.+.+......++.+...+
T Consensus 362 GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 362 GVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred chhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 15689999999999999999999999999999 7999999998 77666666566666666555
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=290.82 Aligned_cols=322 Identities=20% Similarity=0.286 Sum_probs=237.1
Q ss_pred CchhhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHH--HHh----cCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 54 DPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELA--HLI----RKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 54 ~~~~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~--~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
++...|.|.|.+.+..++. +|.|-.+-||||||+++++|+.-+. +.+ ..+.++..||+||+++|+.|.++.+.
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 3445688999999999999 9999999999999999999975332 211 23457789999999999999998887
Q ss_pred HHc---------CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC
Q 000380 127 ESI---------GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH 197 (1601)
Q Consensus 127 ~~~---------~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~ 197 (1601)
.+. .++.....|+.+...+.... -.+.+|+|+||++|.++|....++++-..++.+|||+++.+.|..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v---~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV---RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH---hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 753 25777888988765543333 348999999999999999999999999999999999999987765
Q ss_pred h-HHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecC
Q 000380 198 P-YAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGP 276 (1601)
Q Consensus 198 ~-~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 276 (1601)
. .+.|...|. ...+.|.+|||- +..|....+.--.+..+++
T Consensus 345 ddir~iF~~FK-----~QRQTLLFSATM------------P~KIQ~FAkSALVKPvtvN--------------------- 386 (610)
T KOG0341|consen 345 DDIRTIFSFFK-----GQRQTLLFSATM------------PKKIQNFAKSALVKPVTVN--------------------- 386 (610)
T ss_pred hhHHHHHHHHh-----hhhheeeeeccc------------cHHHHHHHHhhcccceEEe---------------------
Confidence 4 445555552 235678888884 3333333221111111110
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHH
Q 000380 277 VINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRN 356 (1601)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~ 356 (1601)
.|..++... +..
T Consensus 387 ----------------------------------------------------------VGRAGAAsl-------dVi--- 398 (610)
T KOG0341|consen 387 ----------------------------------------------------------VGRAGAASL-------DVI--- 398 (610)
T ss_pred ----------------------------------------------------------cccccccch-------hHH---
Confidence 000000000 000
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhh
Q 000380 357 ELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 357 ~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~ 436 (1601)
....|+.+ ..|+-.|++-|.. ...++||||+.+..
T Consensus 399 ------------QevEyVkq-----------------------------EaKiVylLeCLQK----T~PpVLIFaEkK~D 433 (610)
T KOG0341|consen 399 ------------QEVEYVKQ-----------------------------EAKIVYLLECLQK----TSPPVLIFAEKKAD 433 (610)
T ss_pred ------------HHHHHHHh-----------------------------hhhhhhHHHHhcc----CCCceEEEeccccC
Confidence 00011100 2455556665543 45689999999999
Q ss_pred HHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHH
Q 000380 437 ARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516 (1601)
Q Consensus 437 a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~ 516 (1601)
++.+.++|--.+. ..+.+|+| -++++|...++.||.|+-+|||||+|++.|+|+|++.+||+||.|....
T Consensus 434 VD~IhEYLLlKGV-------EavaIHGG---KDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIE 503 (610)
T KOG0341|consen 434 VDDIHEYLLLKGV-------EAVAIHGG---KDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIE 503 (610)
T ss_pred hHHHHHHHHHccc-------eeEEeecC---cchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHH
Confidence 9999999876443 26788986 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCCCeEEE-EEeCC
Q 000380 517 SFIQSRGR-ARMPQSEYAF-LVDSG 539 (1601)
Q Consensus 517 ~yiQr~GR-AR~g~s~~vi-lv~~~ 539 (1601)
+|+||+|| +|.|+.|.+. |++..
T Consensus 504 NYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 504 NYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHhcccCCCCCcceeeeeeccc
Confidence 99999999 5999999997 55433
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=288.96 Aligned_cols=322 Identities=21% Similarity=0.327 Sum_probs=246.1
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeCChhHHHHHHHHHHHH---
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR-----KPQKSICIFLAPTVALVQQQAKVIEES--- 128 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-----~~~~~~vl~LvPt~~Lv~Q~~~~l~~~--- 128 (1601)
.|.+.|-+++..++. +++|-.+-||||||-+++.++ +.+.+. ...++..||||||++|+.|.+.+.+++
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm--~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPM--IVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHH--HHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 377889999999998 999999999999999999988 444433 345789999999999999999998887
Q ss_pred cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcC
Q 000380 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 129 ~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~ 208 (1601)
.++++..++|+.+.|.+...++ .++.||||||++|++++...-.++.++.+|||||++++.+.|..+..+-+....+
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk---~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELK---EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhh---cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 4799999999998777655555 4899999999999999999999999999999999999988887665555554433
Q ss_pred CCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHH-hccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhh
Q 000380 209 PDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLEN-LLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~-~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (1601)
+..+.|.++|| +.+.++.|.+ +|...+..+.. .....
T Consensus 400 ----pdrQtllFsaT------------f~~kIe~lard~L~dpVrvVqg----------------~vgea---------- 437 (731)
T KOG0339|consen 400 ----PDRQTLLFSAT------------FKKKIEKLARDILSDPVRVVQG----------------EVGEA---------- 437 (731)
T ss_pred ----CcceEEEeecc------------chHHHHHHHHHHhcCCeeEEEe----------------ehhcc----------
Confidence 23567887877 4455666533 22221111100 00000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCc
Q 000380 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTID 367 (1601)
Q Consensus 288 ~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 367 (1601)
.
T Consensus 438 -------------------------------------------------------------------------------n 438 (731)
T KOG0339|consen 438 -------------------------------------------------------------------------------N 438 (731)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 368 DSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 368 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
..+.+ .+.++ . .-..|+..|+.-|..+. ...++||||..+..++.++..|+..
T Consensus 439 ~dITQ----~V~V~-------------------~--s~~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lklk 491 (731)
T KOG0339|consen 439 EDITQ----TVSVC-------------------P--SEEKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKLK 491 (731)
T ss_pred cchhh----eeeec-------------------c--CcHHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhccc
Confidence 00000 00000 0 00457778888787764 4568999999999999999999865
Q ss_pred ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CC
Q 000380 448 KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526 (1601)
Q Consensus 448 ~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR 526 (1601)
++. +..+|+ +|.+.+|.++|.+|+++...|||+|+++.+|+|||++..||+||.-.+...|.||+|| ||
T Consensus 492 ~~~-------v~llhg---dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgR 561 (731)
T KOG0339|consen 492 GFN-------VSLLHG---DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGR 561 (731)
T ss_pred cce-------eeeecC---chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccc
Confidence 432 444555 6999999999999999999999999999999999999999999999999999999999 69
Q ss_pred CCCCeEEE-EEeCCCHh
Q 000380 527 MPQSEYAF-LVDSGNQR 542 (1601)
Q Consensus 527 ~g~s~~vi-lv~~~~~~ 542 (1601)
.|..|.++ ++++.+..
T Consensus 562 ag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 562 AGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ccccceeeEEechhhHH
Confidence 99999888 66655543
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=316.49 Aligned_cols=322 Identities=21% Similarity=0.283 Sum_probs=228.0
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCChhHHHHHHHHHHHH--
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-----PQKSICIFLAPTVALVQQQAKVIEES-- 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~-----~~~~~vl~LvPt~~Lv~Q~~~~l~~~-- 128 (1601)
..|++.|.++++.+.+ +|++|.+|||||||++|++|+. ..+... ..+-.+|+|.|.++|..++.+.++..
T Consensus 21 ~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil--~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI--NELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHH--HHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3589999999999999 9999999999999999999994 444444 12357999999999999998888764
Q ss_pred -cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcccc--CccceeEEEEecCccccccCCCh-HHHHHH
Q 000380 129 -IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI--KMELIALLIFDECHHAQVKSNHP-YAKIMK 204 (1601)
Q Consensus 129 -~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~--~l~~i~llI~DEaH~~~~~~~~~-~~~i~~ 204 (1601)
+|+++.+-+|+++...++.... +.++|+|+||+.|.-++....+ .+.++.++|+||.|.+.+.+... ...-+.
T Consensus 99 ~~G~~v~vRhGDT~~~er~r~~~---~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le 175 (814)
T COG1201 99 ELGIEVAVRHGDTPQSEKQKMLK---NPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE 175 (814)
T ss_pred HcCCccceecCCCChHHhhhccC---CCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH
Confidence 5899999999988655543333 3589999999999887776432 37899999999999996443332 222233
Q ss_pred HHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccC-----eEEeecCHHHHhcccCCCeEEEEEecCCCC
Q 000380 205 DFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA-----KVYSVEDAEDLESFVSSPVVRVYQYGPVIN 279 (1601)
Q Consensus 205 ~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~-----~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 279 (1601)
++..... .++.+|||||... ...+.+.|.. .+..+.. ..++.+.+..-.+...
T Consensus 176 RL~~l~~--~~qRIGLSATV~~-------------~~~varfL~g~~~~~~Iv~~~~-------~k~~~i~v~~p~~~~~ 233 (814)
T COG1201 176 RLRELAG--DFQRIGLSATVGP-------------PEEVAKFLVGFGDPCEIVDVSA-------AKKLEIKVISPVEDLI 233 (814)
T ss_pred HHHhhCc--ccEEEeehhccCC-------------HHHHHHHhcCCCCceEEEEccc-------CCcceEEEEecCCccc
Confidence 3322222 5899999999731 2233333321 1111111 1112222211110000
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHH
Q 000380 280 DTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELI 359 (1601)
Q Consensus 280 ~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~ 359 (1601)
.
T Consensus 234 ~------------------------------------------------------------------------------- 234 (814)
T COG1201 234 Y------------------------------------------------------------------------------- 234 (814)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHH
Q 000380 360 EAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARA 439 (1601)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~ 439 (1601)
. ......-+..+.++++++ ..+|||+|||.+|+.
T Consensus 235 --~---------------------------------------~~~~~~~~~~i~~~v~~~-----~ttLIF~NTR~~aE~ 268 (814)
T COG1201 235 --D---------------------------------------EELWAALYERIAELVKKH-----RTTLIFTNTRSGAER 268 (814)
T ss_pred --c---------------------------------------cchhHHHHHHHHHHHhhc-----CcEEEEEeChHHHHH
Confidence 0 000012223344444443 379999999999999
Q ss_pred HHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHH
Q 000380 440 LSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519 (1601)
Q Consensus 440 L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yi 519 (1601)
++..|+.... ..+..||| +++++.|.++.++|++|+++++|||+.+|-|||+.++++||++..|.++..++
T Consensus 269 l~~~L~~~~~-------~~i~~HHg--SlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 269 LAFRLKKLGP-------DIIEVHHG--SLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred HHHHHHHhcC-------Cceeeecc--cccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 9999998642 24566766 79999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC--CCCCCeEEEEEeCC
Q 000380 520 QSRGRA--RMPQSEYAFLVDSG 539 (1601)
Q Consensus 520 Qr~GRA--R~g~s~~vilv~~~ 539 (1601)
||+||+ |.+.....+++..+
T Consensus 340 QRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 340 QRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhccccccccCCcccEEEEecC
Confidence 999996 66664444444433
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=326.83 Aligned_cols=319 Identities=18% Similarity=0.237 Sum_probs=213.6
Q ss_pred hhhhHHHHHHHHHHhcc-------CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAMEE-------NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~~-------n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
+.|+++|.++++.+.+. |.++.+|||||||++|++++... . ..+.+++|++||++|+.|+++.+++++
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~--~---~~g~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA--I---EAGYQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH--H---HcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 45899999999988772 79999999999999999998442 2 136789999999999999999999875
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhc-cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~-~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
++++..++|+.+...+...+..... .++|+|+||+.+.+ .+.+.+++++|+||+|++. ...+. .+..
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg---~~qr~-~l~~ 405 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG---VEQRL-ALRE 405 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh---HHHHH-HHHh
Confidence 6899999999876555555555443 48999999987642 3567899999999999983 22222 2222
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchh
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (1601)
. ...+++|+|||||..+. + .+...-+..+..+... .....|....+ ..
T Consensus 406 ~-----~~~~~iL~~SATp~prt-----------l-~~~~~g~~~~s~i~~~----p~~r~~i~~~~-~~---------- 453 (681)
T PRK10917 406 K-----GENPHVLVMTATPIPRT-----------L-AMTAYGDLDVSVIDEL----PPGRKPITTVV-IP---------- 453 (681)
T ss_pred c-----CCCCCEEEEeCCCCHHH-----------H-HHHHcCCCceEEEecC----CCCCCCcEEEE-eC----------
Confidence 1 22478999999994221 1 0110000000000000 00000000000 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCC
Q 000380 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNT 365 (1601)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 365 (1601)
T Consensus 454 -------------------------------------------------------------------------------- 453 (681)
T PRK10917 454 -------------------------------------------------------------------------------- 453 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchh--------hH
Q 000380 366 IDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIV--------TA 437 (1601)
Q Consensus 366 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~--------~a 437 (1601)
..+...+.+.+... ...+.+++|||+.+. .+
T Consensus 454 ----------------------------------------~~~~~~~~~~i~~~-~~~g~q~~v~~~~ie~s~~l~~~~~ 492 (681)
T PRK10917 454 ----------------------------------------DSRRDEVYERIREE-IAKGRQAYVVCPLIEESEKLDLQSA 492 (681)
T ss_pred ----------------------------------------cccHHHHHHHHHHH-HHcCCcEEEEEcccccccchhHHHH
Confidence 00001111111111 124668999998643 44
Q ss_pred HHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCC-CHH
Q 000380 438 RALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE-TVA 516 (1601)
Q Consensus 438 ~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~-s~~ 516 (1601)
..+++.|.... ..+ .+..+|+ +|++++|++++++|++|+++|||||+++++|||+|++++||++|.|. ...
T Consensus 493 ~~~~~~L~~~~--~~~---~v~~lHG---~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls 564 (681)
T PRK10917 493 EETYEELQEAF--PEL---RVGLLHG---RMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLA 564 (681)
T ss_pred HHHHHHHHHHC--CCC---cEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHH
Confidence 55666666431 111 2334555 59999999999999999999999999999999999999999999997 578
Q ss_pred HHHHHhhcC-CCCCCeEEEEEeCC--CHhHHHHHHHH
Q 000380 517 SFIQSRGRA-RMPQSEYAFLVDSG--NQRELDLIKNF 550 (1601)
Q Consensus 517 ~yiQr~GRA-R~g~s~~vilv~~~--~~~~~~~i~~~ 550 (1601)
++.||+||+ |.|..|+|+++..+ +....+.++.+
T Consensus 565 ~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~ 601 (681)
T PRK10917 565 QLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIM 601 (681)
T ss_pred HHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHH
Confidence 899999995 99999999977632 23344444433
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=322.09 Aligned_cols=306 Identities=20% Similarity=0.261 Sum_probs=210.3
Q ss_pred hhhhHHHHHHHHHHhc-------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
+.|+++|.++++.+++ .|.++++|||+|||.+|+.++.. ... .+++++|||||++||.|+++.+++.+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~--al~---~g~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFK--AVL---DGKQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHH--HHH---hCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4589999999999987 48999999999999999988743 222 25789999999999999999999865
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhc-cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~-~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
++++..++|..+.......+..... .++|+|+||..+ +..+.+.++++|||||+|++. . .....++.
T Consensus 525 ~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg---v-~~~~~L~~ 595 (926)
T TIGR00580 525 ANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG---V-KQKEKLKE 595 (926)
T ss_pred ccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc---h-hHHHHHHh
Confidence 5788889888764444444443323 479999999643 345678899999999999973 1 12334443
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchh
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (1601)
+ ...+++|+|||||..+. +.. .+....+..++..... ...|....+ .+.
T Consensus 596 ~-----~~~~~vL~~SATpiprt-------l~~---~l~g~~d~s~I~~~p~------~R~~V~t~v--~~~-------- 644 (926)
T TIGR00580 596 L-----RTSVDVLTLSATPIPRT-------LHM---SMSGIRDLSIIATPPE------DRLPVRTFV--MEY-------- 644 (926)
T ss_pred c-----CCCCCEEEEecCCCHHH-------HHH---HHhcCCCcEEEecCCC------CccceEEEE--Eec--------
Confidence 3 13478999999994321 100 0000011111100000 000000000 000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCC
Q 000380 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNT 365 (1601)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 365 (1601)
T Consensus 645 -------------------------------------------------------------------------------- 644 (926)
T TIGR00580 645 -------------------------------------------------------------------------------- 644 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHH
Q 000380 366 IDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ 445 (1601)
Q Consensus 366 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~ 445 (1601)
+.+. ....++... ..+.+++|||+++..++.+++.|+
T Consensus 645 ----------------------------------------~~~~-i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~ 681 (926)
T TIGR00580 645 ----------------------------------------DPEL-VREAIRREL--LRGGQVFYVHNRIESIEKLATQLR 681 (926)
T ss_pred ----------------------------------------CHHH-HHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHH
Confidence 0000 000001111 135689999999999999999998
Q ss_pred hcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCC-CHHHHHHHhhc
Q 000380 446 NLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE-TVASFIQSRGR 524 (1601)
Q Consensus 446 ~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~-s~~~yiQr~GR 524 (1601)
... .++ .+..+|| +|++++|.+++++|++|+++|||||+++++|||+|++++||+++.|. ...+|+||+||
T Consensus 682 ~~~--p~~---~v~~lHG---~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GR 753 (926)
T TIGR00580 682 ELV--PEA---RIAIAHG---QMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGR 753 (926)
T ss_pred HhC--CCC---eEEEecC---CCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcC
Confidence 741 111 2444566 59999999999999999999999999999999999999999999875 67899999999
Q ss_pred C-CCCCCeEEEEEeC
Q 000380 525 A-RMPQSEYAFLVDS 538 (1601)
Q Consensus 525 A-R~g~s~~vilv~~ 538 (1601)
+ |.|+.|+++++..
T Consensus 754 vGR~g~~g~aill~~ 768 (926)
T TIGR00580 754 VGRSKKKAYAYLLYP 768 (926)
T ss_pred CCCCCCCeEEEEEEC
Confidence 5 9999999996643
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=321.43 Aligned_cols=418 Identities=18% Similarity=0.179 Sum_probs=230.9
Q ss_pred hhhhhHHHHHHHHHHhc---cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000380 56 KQIARKYQLELCKKAME---ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~---~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~ 132 (1601)
...|.|||.+++..+++ .++|+++++|.|||+.|++.+.++ ...+..+++|||||+ .|+.||..++.+.+++.
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l---~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQ---LLTGRAERVLILVPE-TLQHQWLVEMLRRFNLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHH---HHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC
Confidence 45689999999988766 579999999999999999887553 233445689999997 89999999999888988
Q ss_pred EEEEeCCCCcC---CchhhHHhhhccCeEEEEcHHHHHHHHh-ccccCccceeEEEEecCccccccC---CChHHHHHHH
Q 000380 133 VRTFCGGSKRL---KSHCDWEKEIDQYEVLVMIPQILLYCLY-HRFIKMELIALLIFDECHHAQVKS---NHPYAKIMKD 205 (1601)
Q Consensus 133 v~~~~G~~~~~---~~~~~~~~~~~~~~VlV~Tp~~l~~~l~-~~~~~l~~i~llI~DEaH~~~~~~---~~~~~~i~~~ 205 (1601)
+.++.++.... .....| ...+++|+|++.+...-. ...+.-..+++||||||||+.... +..|..+ ..
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf----~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v-~~ 300 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPF----ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV-EQ 300 (956)
T ss_pred eEEEcCcchhhhcccccCcc----ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH-HH
Confidence 88876653211 111223 347899999998874211 112233578999999999995211 1124433 33
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccC--CCeEEEEE-ecCCCCCCC
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVS--SPVVRVYQ-YGPVINDTS 282 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~--~p~~~~~~-~~~~~~~~~ 282 (1601)
+.. ..+++|+|||||..+... .+-.+-++++...+. +...+..-.. .|.-..+. +. ......
T Consensus 301 La~----~~~~~LLLTATP~q~~~~--------e~falL~lLdP~~f~--~~~~F~~e~~~~~~~a~~v~~l~-~~~~~~ 365 (956)
T PRK04914 301 LAE----VIPGVLLLTATPEQLGQE--------SHFARLRLLDPDRFH--DYEAFVEEQQQYRPVADAVQALL-AGEKLS 365 (956)
T ss_pred Hhh----ccCCEEEEEcCcccCCcH--------HHHHhhhhhCCCcCC--CHHHHHHHHHhhHHHHHHHHHHh-cCCcCC
Confidence 321 357899999999875432 122233445544332 1111111000 00000000 00 000000
Q ss_pred c-hhhhHHHHHHHHHHHHHHHHhhhhcccch--hhhhHHHHHHHHhhhH-----HH--HHHhhhhhHHHHHHHHHhc-Cc
Q 000380 283 S-SYVTCSEQLAEIKREQYISALSRKLHDHQ--SLRNTTKQLNRLHDSM-----KF--CLENLGVCGALHASYILLS-GD 351 (1601)
Q Consensus 283 ~-~~~~~~~~l~~i~~~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~~-----~~--~~~~lg~~~~~~~~~~~l~-~~ 351 (1601)
. ....+.+.+.+- ....+.+.+.... ......+.++.+...- ++ .....+-+..-....+-+. .+
T Consensus 366 ~~~~~~l~~ll~~~----~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~ 441 (956)
T PRK04914 366 DDALNALGELLGEQ----DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPE 441 (956)
T ss_pred HHHHHHHHHHhccc----chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCH
Confidence 0 001111111100 0000000000000 0000001111111000 00 0000000000000000000 00
Q ss_pred hhHHHHHHHhhcCCCchHHHH--HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEE
Q 000380 352 ETMRNELIEAEGNTIDDSLCR--FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIV 429 (1601)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~--~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~II 429 (1601)
.+ ...+... ....... +-......+.. .-.....++|+..|.++|+.. .+.|+||
T Consensus 442 ~y--~~~~~~~---~~~~~~~~l~pe~~~~~~~~---------------~~~~~~~d~Ki~~L~~~L~~~---~~~KvLV 498 (956)
T PRK04914 442 QY--QTAIKVS---LEARARDMLYPEQIYQEFED---------------NATWWNFDPRVEWLIDFLKSH---RSEKVLV 498 (956)
T ss_pred HH--HHHHHHh---HHHHHHhhcCHHHHHHHHhh---------------hhhccccCHHHHHHHHHHHhc---CCCeEEE
Confidence 00 0000000 0000000 00000000000 000112378999999999875 3679999
Q ss_pred EecchhhHHHHHHHHHhc-ccccccccceEEeccCCCCcCCHHHHHHHHHHHhcC--CccEEEEecccccCccCCCccEE
Q 000380 430 FVNRIVTARALSYILQNL-KFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG--ELNLLVATKVGEEGLDIQTCCLV 506 (1601)
Q Consensus 430 Fv~~r~~a~~L~~~L~~~-~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g--~~~vLVaT~vleeGIDip~~~~V 506 (1601)
||+++.++..|.+.|... ++ + .+.+|+ +|+..+|.++++.|+++ .++|||||+++++|+|++.|++|
T Consensus 499 F~~~~~t~~~L~~~L~~~~Gi----~---~~~ihG---~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~V 568 (956)
T PRK04914 499 ICAKAATALQLEQALREREGI----R---AAVFHE---GMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHL 568 (956)
T ss_pred EeCcHHHHHHHHHHHhhccCe----e---EEEEEC---CCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEE
Confidence 999999999999999542 32 2 445676 49999999999999985 59999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhhcC-CCCCCeEEE
Q 000380 507 IRFDLPETVASFIQSRGRA-RMPQSEYAF 534 (1601)
Q Consensus 507 I~fd~p~s~~~yiQr~GRA-R~g~s~~vi 534 (1601)
|+||+|||+..|+||+||+ |.|+++.|.
T Consensus 569 InfDlP~nP~~~eQRIGR~~RiGQ~~~V~ 597 (956)
T PRK04914 569 VLFDLPFNPDLLEQRIGRLDRIGQKHDIQ 597 (956)
T ss_pred EEecCCCCHHHHHHHhcccccCCCCceEE
Confidence 9999999999999999996 999998764
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=321.87 Aligned_cols=325 Identities=21% Similarity=0.295 Sum_probs=215.3
Q ss_pred hhhhHHHHHHHHHH-hc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH--cCCc
Q 000380 57 QIARKYQLELCKKA-ME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES--IGFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~-l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~--~~l~ 132 (1601)
..++++|.++++.. +. +|+++++|||+|||++|.+++.. ++.. .+.++|||+|+++|+.|+++.++.+ .+++
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~--~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVN--KLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHH--HHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 35889999999874 44 89999999999999999998843 3332 2568999999999999999998864 4789
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~ 211 (1601)
+..++|+.... ..|. .+++|+|+||+++..++.+....++++++||+||+|.+.+.+..+ +..++..+
T Consensus 98 v~~~~Gd~~~~---~~~~---~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l----- 166 (720)
T PRK00254 98 VAMTTGDYDST---DEWL---GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM----- 166 (720)
T ss_pred EEEEeCCCCCc---hhhh---ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc-----
Confidence 99999987542 2232 468999999999998887766668899999999999996443333 33444433
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQ 291 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1601)
...++++|||||+.+ ...+...++...+... +-+.|....+.+.....
T Consensus 167 ~~~~qiI~lSATl~n-------------~~~la~wl~~~~~~~~-------~rpv~l~~~~~~~~~~~------------ 214 (720)
T PRK00254 167 LGRAQILGLSATVGN-------------AEELAEWLNAELVVSD-------WRPVKLRKGVFYQGFLF------------ 214 (720)
T ss_pred CcCCcEEEEEccCCC-------------HHHHHHHhCCccccCC-------CCCCcceeeEecCCeee------------
Confidence 134789999999832 2344445544321110 00001000000000000
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHH
Q 000380 292 LAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC 371 (1601)
Q Consensus 292 l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 371 (1601)
.. + + ...
T Consensus 215 --------------------------------------------------------~~-~-----------~-----~~~ 221 (720)
T PRK00254 215 --------------------------------------------------------WE-D-----------G-----KIE 221 (720)
T ss_pred --------------------------------------------------------cc-C-----------c-----chh
Confidence 00 0 0 000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc--
Q 000380 372 RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF-- 449 (1601)
Q Consensus 372 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~-- 449 (1601)
.+. ......+.+.+. .+.++||||++|..++.++..|.....
T Consensus 222 ~~~-------------------------------~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~ 265 (720)
T PRK00254 222 RFP-------------------------------NSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKRF 265 (720)
T ss_pred cch-------------------------------HHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHHh
Confidence 000 000111222222 256899999999999888776643200
Q ss_pred c--c----------c----cc-------cceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEE
Q 000380 450 L--A----------S----WR-------CHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLV 506 (1601)
Q Consensus 450 ~--~----------~----~~-------~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~V 506 (1601)
. . . .. ...-+++|++ +|++++|..+++.|++|.++|||||+++++|+|+|+.++|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa--gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vV 343 (720)
T PRK00254 266 LTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA--GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVI 343 (720)
T ss_pred cCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC--CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEE
Confidence 0 0 0 00 0112555555 6999999999999999999999999999999999999999
Q ss_pred EE-------cCCCC-CHHHHHHHhhcC-CCC--CCeEEEEEeCC
Q 000380 507 IR-------FDLPE-TVASFIQSRGRA-RMP--QSEYAFLVDSG 539 (1601)
Q Consensus 507 I~-------fd~p~-s~~~yiQr~GRA-R~g--~s~~vilv~~~ 539 (1601)
|. ++.|. +..+|+||+||| |.| ..|.++++...
T Consensus 344 I~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 344 IRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred ECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 94 55544 567999999997 865 55777766543
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=317.39 Aligned_cols=308 Identities=22% Similarity=0.279 Sum_probs=207.5
Q ss_pred hhhhHHHHHHHHHHhcc-------CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAMEE-------NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~~-------n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
+.|+++|.++++.+++. |.++++|||||||++|++++.... . .+.+++|++||++|+.|+++.+++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~--~---~g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI--E---AGYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH--H---cCCcEEEECCHHHHHHHHHHHHHHHh
Confidence 46899999999988772 689999999999999998874422 1 35689999999999999999999876
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
++++..++|+.....+...|.... .+++|+|+||..+.+ .+.+.+++++||||+|+.. ......+...
T Consensus 309 ~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg---~~qr~~l~~~ 380 (630)
T TIGR00643 309 APLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG---VEQRKKLREK 380 (630)
T ss_pred cccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc---HHHHHHHHHh
Confidence 589999999987655555555433 247999999987753 3567899999999999973 2222333332
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchh
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (1601)
... ...+++++|||||...... + .+...++... .... .....|....+ ...
T Consensus 381 ~~~---~~~~~~l~~SATp~prtl~---------l-~~~~~l~~~~--i~~~----p~~r~~i~~~~-~~~--------- 431 (630)
T TIGR00643 381 GQG---GFTPHVLVMSATPIPRTLA---------L-TVYGDLDTSI--IDEL----PPGRKPITTVL-IKH--------- 431 (630)
T ss_pred ccc---CCCCCEEEEeCCCCcHHHH---------H-HhcCCcceee--eccC----CCCCCceEEEE-eCc---------
Confidence 210 1247899999999532100 0 0000000000 0000 00000000000 000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCC
Q 000380 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNT 365 (1601)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 365 (1601)
T Consensus 432 -------------------------------------------------------------------------------- 431 (630)
T TIGR00643 432 -------------------------------------------------------------------------------- 431 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecch--------hhH
Q 000380 366 IDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRI--------VTA 437 (1601)
Q Consensus 366 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r--------~~a 437 (1601)
..+ ..+.+.+.+. ...+.+++|||+.+ ..+
T Consensus 432 ----------------------------------------~~~-~~~~~~i~~~-l~~g~q~~v~~~~i~~s~~~~~~~a 469 (630)
T TIGR00643 432 ----------------------------------------DEK-DIVYEFIEEE-IAKGRQAYVVYPLIEESEKLDLKAA 469 (630)
T ss_pred ----------------------------------------chH-HHHHHHHHHH-HHhCCcEEEEEccccccccchHHHH
Confidence 000 0111111110 02356899999875 345
Q ss_pred HHHHHHHHhcccccccccce-EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCC-CH
Q 000380 438 RALSYILQNLKFLASWRCHF-LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE-TV 515 (1601)
Q Consensus 438 ~~L~~~L~~~~~~~~~~~~~-~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~-s~ 515 (1601)
+.+++.|.... .+. +..+|| +|+.++|.+++++|++|+.+|||||+++++|||+|++++||++|.|. +.
T Consensus 470 ~~~~~~L~~~~------~~~~v~~lHG---~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gl 540 (630)
T TIGR00643 470 EALYERLKKAF------PKYNVGLLHG---RMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGL 540 (630)
T ss_pred HHHHHHHHhhC------CCCcEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCH
Confidence 56666666431 122 333455 59999999999999999999999999999999999999999999986 68
Q ss_pred HHHHHHhhcC-CCCCCeEEEEEe
Q 000380 516 ASFIQSRGRA-RMPQSEYAFLVD 537 (1601)
Q Consensus 516 ~~yiQr~GRA-R~g~s~~vilv~ 537 (1601)
.+|.||+||+ |.|..|+++++.
T Consensus 541 s~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 541 SQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHHhhhcccCCCCcEEEEEE
Confidence 8999999995 999999999765
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=286.43 Aligned_cols=324 Identities=19% Similarity=0.342 Sum_probs=236.5
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH----cCCc
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES----IGFK 132 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~----~~l~ 132 (1601)
.|.+.|..+++.++. -|.||.+-.|+|||++|..++ +..+........++||+||++++.|..+.+.+. .|++
T Consensus 47 ~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~a--v~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLA--VESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeee--ehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 466799999999988 799999999999999998776 333433444567899999999999999998875 4799
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~ 212 (1601)
+.+|.||.....+...++ .++|+|+||+++..++..+.++++.++|+|+|||+.+.+. ..+..-+..++...+
T Consensus 125 csvfIGGT~~~~d~~rlk----~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t--~sfq~~In~ii~slP- 197 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLIRLK----QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT--ESFQDDINIIINSLP- 197 (980)
T ss_pred eEEEecCchhhhhhhhhh----hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch--hhHHHHHHHHHHhcc-
Confidence 999999998766554444 5899999999999999999999999999999999999742 334444444433222
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
+..+++..|||- +.++..+ +..|+.+|.+....-+.. .+
T Consensus 198 ~~rQv~a~SATY------------p~nLdn~----------------Lsk~mrdp~lVr~n~~d~--~L----------- 236 (980)
T KOG4284|consen 198 QIRQVAAFSATY------------PRNLDNL----------------LSKFMRDPALVRFNADDV--QL----------- 236 (980)
T ss_pred hhheeeEEeccC------------chhHHHH----------------HHHHhcccceeecccCCc--ee-----------
Confidence 457899999984 2233322 233334443221111100 00
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
+| +.+
T Consensus 237 ------------------------------------------~G---------------------------------ikQ 241 (980)
T KOG4284|consen 237 ------------------------------------------FG---------------------------------IKQ 241 (980)
T ss_pred ------------------------------------------ec---------------------------------hhh
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccc
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~ 452 (1601)
|+. ..|... ..++ .+..|++.|-++++.. +-.++||||+....|+-++..|...|+
T Consensus 242 yv~-------~~~s~n------nsve-----emrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~--- 297 (980)
T KOG4284|consen 242 YVV-------AKCSPN------NSVE-----EMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGL--- 297 (980)
T ss_pred eee-------eccCCc------chHH-----HHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCC---
Confidence 000 000000 0000 0024666777777654 234899999999999999999997554
Q ss_pred cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCe
Q 000380 453 WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531 (1601)
Q Consensus 453 ~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~ 531 (1601)
.+.++ +| .|++++|..+++.+|.-.++|||+||..++|||-+++|+||+.|.|.+-..|.||+||| |.|..|
T Consensus 298 -d~~~I----Sg--aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 298 -DVTFI----SG--AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred -CeEEe----cc--ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 44433 33 79999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred EEEEEe
Q 000380 532 YAFLVD 537 (1601)
Q Consensus 532 ~vilv~ 537 (1601)
.++.+.
T Consensus 371 ~aVT~~ 376 (980)
T KOG4284|consen 371 AAVTLL 376 (980)
T ss_pred eeEEEe
Confidence 988443
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=324.63 Aligned_cols=328 Identities=23% Similarity=0.272 Sum_probs=203.6
Q ss_pred EEecCchhHHHHHHHHHHHHHHHhcC----------CCCcEEEEEeCChhHHHHHHHHHHH---------------HcCC
Q 000380 77 VYLGTGCGKTHIAVLLIYELAHLIRK----------PQKSICIFLAPTVALVQQQAKVIEE---------------SIGF 131 (1601)
Q Consensus 77 v~~~TGsGKTlia~l~i~~l~~~~~~----------~~~~~vl~LvPt~~Lv~Q~~~~l~~---------------~~~l 131 (1601)
|++|||||||++|.+++. .+++.. ..+.++|||+|+++|+.|+.+.++. ..++
T Consensus 1 V~APTGSGKTLAA~LpaL--~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i 78 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYAL--DRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNL 78 (1490)
T ss_pred CcCCCCcHHHHHHHHHHH--HHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCce
Confidence 579999999999999883 344332 1346899999999999999998864 1368
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc-cCccceeEEEEecCccccccCC-ChHHHHHHHHcCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF-IKMELIALLIFDECHHAQVKSN-HPYAKIMKDFYKP 209 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~-~~l~~i~llI~DEaH~~~~~~~-~~~~~i~~~~~~~ 209 (1601)
+|..++|+.+...+....+ ..++|+|+||+.|..++.+.. ..++++++|||||+|.+.+.+. ..+...+.++...
T Consensus 79 ~V~vrtGDt~~~eR~rll~---~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l 155 (1490)
T PRK09751 79 RVGIRTGDTPAQERSKLTR---NPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL 155 (1490)
T ss_pred EEEEEECCCCHHHHHHHhc---CCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh
Confidence 8999999987543322222 358999999999998876542 3589999999999999975322 2244444444322
Q ss_pred CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCe--EEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhh
Q 000380 210 DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAK--VYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~--~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (1601)
. ...++++|||||..+ .+++...+... +..+... ......+.++............
T Consensus 156 ~-~~~~QrIgLSATI~n-------------~eevA~~L~g~~pv~Iv~~~-----~~r~~~l~v~vp~~d~~~~~~~--- 213 (1490)
T PRK09751 156 L-HTSAQRIGLSATVRS-------------ASDVAAFLGGDRPVTVVNPP-----AMRHPQIRIVVPVANMDDVSSV--- 213 (1490)
T ss_pred C-CCCCeEEEEEeeCCC-------------HHHHHHHhcCCCCEEEECCC-----CCcccceEEEEecCchhhcccc---
Confidence 2 234789999999732 22343444321 1111100 0001111111110000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCc
Q 000380 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTID 367 (1601)
Q Consensus 288 ~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 367 (1601)
.. ..+ +.. . .. ..
T Consensus 214 ---------------------~~-----------------------~~~--------------~~~-----~-~~---r~ 226 (1490)
T PRK09751 214 ---------------------AS-----------------------GTG--------------EDS-----H-AG---RE 226 (1490)
T ss_pred ---------------------cc-----------------------ccc--------------ccc-----c-hh---hh
Confidence 00 000 000 0 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc
Q 000380 368 DSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL 447 (1601)
Q Consensus 368 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~ 447 (1601)
..+. +. ....++... ..+.++|||||+|..|+.++..|++.
T Consensus 227 ~~i~-----------------------------------~~--v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 227 GSIW-----------------------------------PY--IETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred hhhh-----------------------------------HH--HHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHh
Confidence 0000 00 000111111 12458999999999999999999864
Q ss_pred cccc------------cc------------c-cceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCC
Q 000380 448 KFLA------------SW------------R-CHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQT 502 (1601)
Q Consensus 448 ~~~~------------~~------------~-~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~ 502 (1601)
.... .+ . ...++..|+| ++++++|..++++|++|++++||||++++.|||+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHG--sLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~ 345 (1490)
T PRK09751 268 YAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHG--SVSKEQRAITEQALKSGELRCVVATSSLELGIDMGA 345 (1490)
T ss_pred hhhhccccccccchhhhhhhccccchhccccccceeeeeccc--cCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCccc
Confidence 2100 00 0 0123445655 699999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhhcC-CC-CCCeEEEEEeCC
Q 000380 503 CCLVIRFDLPETVASFIQSRGRA-RM-PQSEYAFLVDSG 539 (1601)
Q Consensus 503 ~~~VI~fd~p~s~~~yiQr~GRA-R~-g~s~~vilv~~~ 539 (1601)
+++||++|.|.+..+|+||+||| |. |..+..+++..+
T Consensus 346 VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 346 VDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred CCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 99999999999999999999996 54 344455555543
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=317.47 Aligned_cols=323 Identities=19% Similarity=0.247 Sum_probs=215.1
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH--cCCcE
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES--IGFKV 133 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~--~~l~v 133 (1601)
+.++++|.++++.+.. +|+++++|||+|||++|.+++.. .+.. ++++++++|+++|+.|+++.++++ .|.++
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~--~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYE--TFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHH--HHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 4589999999999877 89999999999999999988844 2222 457999999999999999999864 36788
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCCC
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDIM 212 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~~ 212 (1601)
...+|+...... + +..++|+|+||+.+..++.+....+.++++||+||||++.+.+..+ +..++..+... .
T Consensus 96 ~~~~G~~~~~~~---~---~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~--~ 167 (674)
T PRK01172 96 KISIGDYDDPPD---F---IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV--N 167 (674)
T ss_pred EEEeCCCCCChh---h---hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc--C
Confidence 888888653221 2 2358999999999988887766668899999999999996544333 44454443221 1
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
...++++||||+.+ ..++...+++..+... +-+.|....+.+.....
T Consensus 168 ~~~riI~lSATl~n-------------~~~la~wl~~~~~~~~-------~r~vpl~~~i~~~~~~~------------- 214 (674)
T PRK01172 168 PDARILALSATVSN-------------ANELAQWLNASLIKSN-------FRPVPLKLGILYRKRLI------------- 214 (674)
T ss_pred cCCcEEEEeCccCC-------------HHHHHHHhCCCccCCC-------CCCCCeEEEEEecCeee-------------
Confidence 34789999999832 2344455554322110 11112111111100000
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
.++..
T Consensus 215 --------------------------------------------------------------------~~~~~------- 219 (674)
T PRK01172 215 --------------------------------------------------------------------LDGYE------- 219 (674)
T ss_pred --------------------------------------------------------------------ecccc-------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccc-c
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFL-A 451 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~-~ 451 (1601)
..+. .+..++.+. ...+.++||||+++..++.++..|...... .
T Consensus 220 ---------------------------------~~~~-~~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~ 264 (674)
T PRK01172 220 ---------------------------------RSQV-DINSLIKET-VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFN 264 (674)
T ss_pred ---------------------------------cccc-cHHHHHHHH-HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 0000 001111111 123568999999999999999888754210 0
Q ss_pred ccc----------------cceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCC----
Q 000380 452 SWR----------------CHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDL---- 511 (1601)
Q Consensus 452 ~~~----------------~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~---- 511 (1601)
.+. ...-+++|++ ++++++|..+++.|++|.++|||||+++++|+|+|+..+|| .|.
T Consensus 265 ~~~~~~~~~~~~~~~L~~~l~~gv~~~ha--gl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~ 341 (674)
T PRK01172 265 DFKVSSENNNVYDDSLNEMLPHGVAFHHA--GLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYG 341 (674)
T ss_pred cccccccccccccHHHHHHHhcCEEEecC--CCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeC
Confidence 000 0012455555 69999999999999999999999999999999999875555 332
Q ss_pred -----CCCHHHHHHHhhcC-CCCC--CeEEEEEeC
Q 000380 512 -----PETVASFIQSRGRA-RMPQ--SEYAFLVDS 538 (1601)
Q Consensus 512 -----p~s~~~yiQr~GRA-R~g~--s~~vilv~~ 538 (1601)
|.+..+|.||+||| |.|. .|.++++..
T Consensus 342 ~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 342 NGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred CCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 56889999999997 8874 455665443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=291.60 Aligned_cols=317 Identities=19% Similarity=0.252 Sum_probs=227.5
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
..|+-|.++++.++. +|+|+.+|||.||+++|.+|.+-+ ...+|||.|..+|+.+|.+.++.. |+++..+
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------~G~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~l 87 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------EGLTLVVSPLISLMKDQVDQLEAA-GIRAAYL 87 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------CCCEEEECchHHHHHHHHHHHHHc-Cceeehh
Confidence 478899999999999 999999999999999999997321 347999999999999999999886 7899999
Q ss_pred eCCCCcCCchhhHHhhhcc-CeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC---hHHHHHHHHcCCCCC
Q 000380 137 CGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH---PYAKIMKDFYKPDIM 212 (1601)
Q Consensus 137 ~G~~~~~~~~~~~~~~~~~-~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~---~~~~i~~~~~~~~~~ 212 (1601)
.+..+.......|.....+ .+++..+|++|.+......+..-.+.++||||||++++||.. .|..+-......
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~--- 164 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL--- 164 (590)
T ss_pred hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC---
Confidence 8887766666666655443 699999999998654444455667899999999999998733 366655543222
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
+.+.+++||||-... + ...+...|... .+......++.. +
T Consensus 165 ~~~p~~AlTATA~~~--------v---~~DI~~~L~l~---------------~~~~~~~sfdRp-----N--------- 204 (590)
T COG0514 165 PNPPVLALTATATPR--------V---RDDIREQLGLQ---------------DANIFRGSFDRP-----N--------- 204 (590)
T ss_pred CCCCEEEEeCCCChH--------H---HHHHHHHhcCC---------------CcceEEecCCCc-----h---------
Confidence 246799999886221 1 11222222110 010000000000 0
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
+.+. .....
T Consensus 205 -----------------------------------i~~~--------------------------v~~~~---------- 213 (590)
T COG0514 205 -----------------------------------LALK--------------------------VVEKG---------- 213 (590)
T ss_pred -----------------------------------hhhh--------------------------hhhcc----------
Confidence 0000 00000
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccc
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~ 452 (1601)
....++..+.+ .....+..+||||.+|..++.+++.|...+..
T Consensus 214 -------------------------------~~~~q~~fi~~----~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~-- 256 (590)
T COG0514 214 -------------------------------EPSDQLAFLAT----VLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS-- 256 (590)
T ss_pred -------------------------------cHHHHHHHHHh----hccccCCCeEEEEeeHHhHHHHHHHHHHCCCc--
Confidence 00011111111 11234567999999999999999999986442
Q ss_pred cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCe
Q 000380 453 WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531 (1601)
Q Consensus 453 ~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~ 531 (1601)
...+|+| |+.++|+.+.++|..+++.|+|||.++++|||-|++..|||||+|.|+.+|.|-.||| |.|...
T Consensus 257 -----a~~YHaG---l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a 328 (590)
T COG0514 257 -----AGAYHAG---LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPA 328 (590)
T ss_pred -----eEEecCC---CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcc
Confidence 4556775 9999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred EEE-EEeCCCHh
Q 000380 532 YAF-LVDSGNQR 542 (1601)
Q Consensus 532 ~vi-lv~~~~~~ 542 (1601)
.++ ++...|..
T Consensus 329 ~aill~~~~D~~ 340 (590)
T COG0514 329 EAILLYSPEDIR 340 (590)
T ss_pred eEEEeeccccHH
Confidence 888 45555543
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=316.67 Aligned_cols=306 Identities=19% Similarity=0.222 Sum_probs=208.4
Q ss_pred hhhhHHHHHHHHHHhc-------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
+.|.+.|.++++.++. .|++++++||+|||.+|+.++... . ..+++++|||||++|+.|+++.+++.+
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~--~---~~g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA--V---ENHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH--H---HcCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 4688999999999887 589999999999999998776332 2 136789999999999999999998754
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
++++..++|..+...+...|.... .+++|+|+||+.+. ..+.+.++++|||||+|++. .. ....++.
T Consensus 674 ~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG---~~-~~e~lk~ 744 (1147)
T PRK10689 674 ANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG---VR-HKERIKA 744 (1147)
T ss_pred ccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---hh-HHHHHHh
Confidence 478888888877555555555432 25799999997542 34567899999999999983 22 3344443
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHH-HHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSL-ENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~L-e~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
+ ....++++|||||..+ .+... ..+.+..++...... ..+....+.
T Consensus 745 l-----~~~~qvLl~SATpipr-----------tl~l~~~gl~d~~~I~~~p~~------r~~v~~~~~----------- 791 (1147)
T PRK10689 745 M-----RADVDILTLTATPIPR-----------TLNMAMSGMRDLSIIATPPAR------RLAVKTFVR----------- 791 (1147)
T ss_pred c-----CCCCcEEEEcCCCCHH-----------HHHHHHhhCCCcEEEecCCCC------CCCceEEEE-----------
Confidence 3 1346899999999432 11100 011111111100000 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcC
Q 000380 285 YVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364 (1601)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 364 (1601)
. + .
T Consensus 792 ------------------------------------------------------------------~-~--------~-- 794 (1147)
T PRK10689 792 ------------------------------------------------------------------E-Y--------D-- 794 (1147)
T ss_pred ------------------------------------------------------------------e-c--------C--
Confidence 0 0 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHH
Q 000380 365 TIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYIL 444 (1601)
Q Consensus 365 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L 444 (1601)
.. ..|...+.++. .+.+++|||+++..++.+++.|
T Consensus 795 --~~-------------------------------------~~k~~il~el~------r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 795 --SL-------------------------------------VVREAILREIL------RGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred --cH-------------------------------------HHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHH
Confidence 00 00111111111 2468999999999999999999
Q ss_pred HhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCC-CCHHHHHHHhh
Q 000380 445 QNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP-ETVASFIQSRG 523 (1601)
Q Consensus 445 ~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p-~s~~~yiQr~G 523 (1601)
.+... ..+ +..+|| +|++++|.+++.+|++|+++|||||+++++|||+|++++||..+.. .+..+|+||+|
T Consensus 830 ~~~~p--~~~---v~~lHG---~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~G 901 (1147)
T PRK10689 830 AELVP--EAR---IAIGHG---QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 (1147)
T ss_pred HHhCC--CCc---EEEEeC---CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhh
Confidence 87521 112 334566 5999999999999999999999999999999999999999944332 24568999999
Q ss_pred cC-CCCCCeEEEEEeCC
Q 000380 524 RA-RMPQSEYAFLVDSG 539 (1601)
Q Consensus 524 RA-R~g~s~~vilv~~~ 539 (1601)
|+ |.|+.++++++...
T Consensus 902 RvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 902 RVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccCCCCCceEEEEEeCC
Confidence 95 99999999977644
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=307.28 Aligned_cols=413 Identities=17% Similarity=0.192 Sum_probs=244.1
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG- 130 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~- 130 (1601)
..+|+||.+.+..++. .++|+++++|.|||++++.++..+... ....+++|||||. +|+.||.++|.++++
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~--~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~ 244 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY--RGITGPHMVVAPK-STLGNWMNEIRRFCPV 244 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh--cCCCCCEEEEeCh-HHHHHHHHHHHHHCCC
Confidence 4699999999988764 579999999999999998887544321 2234569999996 778999999999986
Q ss_pred CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCC
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~ 210 (1601)
+++..++|..................+|+|+|++++.... ..+.--++++||+||||++.+. ......+++.+
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~-~Sklskalr~L---- 317 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNE-NSLLSKTMRLF---- 317 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCH-HHHHHHHHHHh----
Confidence 7888888875421111000001235789999999987643 2233446899999999999421 12244555555
Q ss_pred CCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe-ecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 211 IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 211 ~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~-~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
...+.++|||||+.++ +.+|..+++-..-. ..+...+..+...+.. .......
T Consensus 318 --~a~~RLLLTGTPlqNn-----------l~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~-------------~~~~e~i 371 (1033)
T PLN03142 318 --STNYRLLITGTPLQNN-----------LHELWALLNFLLPEIFSSAETFDEWFQISGE-------------NDQQEVV 371 (1033)
T ss_pred --hcCcEEEEecCCCCCC-----------HHHHHHHHhcCCCCcCCCHHHHHHHHccccc-------------cchHHHH
Confidence 2466799999997664 44555554421111 1222333333222100 0001112
Q ss_pred HHHHHHHHHHHHHHhhhhcc----cch----h--h-hhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHH
Q 000380 290 EQLAEIKREQYISALSRKLH----DHQ----S--L-RNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNEL 358 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~~~----~~~----~--~-~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l 358 (1601)
+.+..+...++...+..... ... . + ...++.+..+..... ..
T Consensus 372 ~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~---------------------------~~ 424 (1033)
T PLN03142 372 QQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL---------------------------DV 424 (1033)
T ss_pred HHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHH---------------------------HH
Confidence 22222222222111111110 000 0 0 000111111110000 00
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCC------ccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEec
Q 000380 359 IEAEGNTIDDSLCRFASQASEVFAAICRRDGIAS------DLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVN 432 (1601)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~------~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~ 432 (1601)
+.. + .....+...+ ..+...|....... .....+.+ ...+.|+..|..+|.... ..+.++|||++
T Consensus 425 l~~-g-~~~~~Llnil----mqLRk~cnHP~L~~~~ep~~~~~~~e~l--ie~SgKl~lLdkLL~~Lk-~~g~KVLIFSQ 495 (1033)
T PLN03142 425 VNA-G-GERKRLLNIA----MQLRKCCNHPYLFQGAEPGPPYTTGEHL--VENSGKMVLLDKLLPKLK-ERDSRVLIFSQ 495 (1033)
T ss_pred Hhc-c-ccHHHHHHHH----HHHHHHhCCHHhhhcccccCcccchhHH--hhhhhHHHHHHHHHHHHH-hcCCeEEeehh
Confidence 000 0 0001111111 11222221110000 00000001 112789999999998764 46789999999
Q ss_pred chhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC---ccEEEEecccccCccCCCccEEEEc
Q 000380 433 RIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE---LNLLVATKVGEEGLDIQTCCLVIRF 509 (1601)
Q Consensus 433 ~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~---~~vLVaT~vleeGIDip~~~~VI~f 509 (1601)
...+...|.++|...+. . ...++| +++..+|..++++|+... ..+|++|.++++|||++.+++||+|
T Consensus 496 ft~~LdiLed~L~~~g~----~---y~rIdG---sts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 496 MTRLLDILEDYLMYRGY----Q---YCRIDG---NTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred HHHHHHHHHHHHHHcCC----c---EEEECC---CCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 99999999999986543 2 334555 589999999999997632 4679999999999999999999999
Q ss_pred CCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhHHHHHHHHHH
Q 000380 510 DLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRELDLIKNFSK 552 (1601)
Q Consensus 510 d~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~~~~i~~~~~ 552 (1601)
|++||+....|++||+ |.||.+.|. |+..+..+ .+.++....
T Consensus 566 D~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE-EkIlera~~ 611 (1033)
T PLN03142 566 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE-EKVIERAYK 611 (1033)
T ss_pred CCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH-HHHHHHHHH
Confidence 9999999999999999 999997553 56655543 445554433
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=285.56 Aligned_cols=336 Identities=18% Similarity=0.246 Sum_probs=225.7
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCChhHHHHHHHHHHHHc----
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK---PQKSICIFLAPTVALVQQQAKVIEESI---- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~---~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---- 129 (1601)
.|.+.|.+++...+. +|++.++|||+|||+.+.+||......... ..+-+++|+.||++|+.|.+.+++++.
T Consensus 158 ~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~ 237 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEG 237 (593)
T ss_pred CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCC
Confidence 377889999999998 999999999999999999998442222221 235689999999999999999999875
Q ss_pred -CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc--cCccceeEEEEecCccccccCCChHHHHHHHH
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF--IKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~ 206 (1601)
++++..+............... ..++|+|+||-++..++..+. +.++.+.++|+||++.+.+. ..+...+...
T Consensus 238 t~~~a~~~~~~~~~~qk~a~~~~--~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~--~~f~~Qla~I 313 (593)
T KOG0344|consen 238 TSLRAAQFSKPAYPSQKPAFLSD--EKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP--EFFVEQLADI 313 (593)
T ss_pred CchhhhhcccccchhhccchhHH--HHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh--hhHHHHHHHH
Confidence 3555555554332222222221 247899999999999888775 67899999999999999743 2333333333
Q ss_pred cCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhh
Q 000380 207 YKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 286 (1601)
|....++.-++=.+||| ++..++++....... +...++-..+..
T Consensus 314 ~sac~s~~i~~a~FSat------------~~~~VEE~~~~i~~~----------------~~~vivg~~~sa-------- 357 (593)
T KOG0344|consen 314 YSACQSPDIRVALFSAT------------ISVYVEEWAELIKSD----------------LKRVIVGLRNSA-------- 357 (593)
T ss_pred HHHhcCcchhhhhhhcc------------ccHHHHHHHHHhhcc----------------ceeEEEecchhH--------
Confidence 32222222333334444 233333332221111 000111000000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCC
Q 000380 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTI 366 (1601)
Q Consensus 287 ~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 366 (1601)
...+.+...+| +
T Consensus 358 ----------------------------------~~~V~QelvF~--------g-------------------------- 369 (593)
T KOG0344|consen 358 ----------------------------------NETVDQELVFC--------G-------------------------- 369 (593)
T ss_pred ----------------------------------hhhhhhhheee--------e--------------------------
Confidence 00000000000 0
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHh
Q 000380 367 DDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQN 446 (1601)
Q Consensus 367 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~ 446 (1601)
.-..|+..+.+++..- -..+++||+++.+.|..|...|..
T Consensus 370 -------------------------------------se~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~~ 409 (593)
T KOG0344|consen 370 -------------------------------------SEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELEI 409 (593)
T ss_pred -------------------------------------cchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhhh
Confidence 0035666677776643 245899999999999999999862
Q ss_pred cccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-C
Q 000380 447 LKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-A 525 (1601)
Q Consensus 447 ~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-A 525 (1601)
..++..+. +|+ ..++.+|.+++++||.|++.+||||+++++|||+.++|+||+||.|.+..+|+||+|| |
T Consensus 410 ---~~~i~v~v---Ih~---e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtg 480 (593)
T KOG0344|consen 410 ---YDNINVDV---IHG---ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTG 480 (593)
T ss_pred ---ccCcceee---Eec---ccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccC
Confidence 23333333 344 4789999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCeEEE-EEeCCCHhHHHHHHHH
Q 000380 526 RMPQSEYAF-LVDSGNQRELDLIKNF 550 (1601)
Q Consensus 526 R~g~s~~vi-lv~~~~~~~~~~i~~~ 550 (1601)
|.|++|.++ ++++.+....+.+...
T Consensus 481 Rag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 481 RAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred CCCCCcceEEEeccccchhhhhHHHH
Confidence 999999998 6666555554444433
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=264.42 Aligned_cols=325 Identities=21% Similarity=0.336 Sum_probs=223.8
Q ss_pred hhHHHHHHHHHHhc---cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCc
Q 000380 59 ARKYQLELCKKAME---ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFK 132 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~---~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~ 132 (1601)
|...|..+++-++. +|.|..+..|+|||-++++.++. +.--.-..+.++.|+||++||.|..+.+.+. ++++
T Consensus 113 PskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLs--rvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~it 190 (477)
T KOG0332|consen 113 PSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLS--RVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELT 190 (477)
T ss_pred cchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHH--hcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeee
Confidence 66789999998888 89999999999999999988733 3222222456888899999999988888764 3444
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhc-cccCccceeEEEEecCccccccCCC--hHHHHHHHHcCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH-RFIKMELIALLIFDECHHAQVKSNH--PYAKIMKDFYKP 209 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~-~~~~l~~i~llI~DEaH~~~~~~~~--~~~~i~~~~~~~ 209 (1601)
+....-+... .+.... ..+|+++||+.+++++.. ..+.+..+..+|+|||+++.+.... .-..||+..
T Consensus 191 a~yair~sk~-~rG~~i-----~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l--- 261 (477)
T KOG0332|consen 191 ASYAIRGSKA-KRGNKL-----TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL--- 261 (477)
T ss_pred EEEEecCccc-ccCCcc-----hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc---
Confidence 4444333311 111111 258999999999999887 7888999999999999999753311 122344433
Q ss_pred CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 210 DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
.+..+++..|||-. ...... ..+.+++|....+.-.
T Consensus 262 --P~~~QllLFSATf~------------e~V~~F----------------a~kivpn~n~i~Lk~e-------------- 297 (477)
T KOG0332|consen 262 --PRNQQLLLFSATFV------------EKVAAF----------------ALKIVPNANVIILKRE-------------- 297 (477)
T ss_pred --CCcceEEeeechhH------------HHHHHH----------------HHHhcCCCceeeeehh--------------
Confidence 12357888888841 111111 1112233322111000
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchH
Q 000380 290 EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS 369 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 369 (1601)
+. .+ ..
T Consensus 298 ---------el-----------------------------------~L------------------------------~~ 303 (477)
T KOG0332|consen 298 ---------EL-----------------------------------AL------------------------------DN 303 (477)
T ss_pred ---------hc-----------------------------------cc------------------------------cc
Confidence 00 00 00
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc
Q 000380 370 LCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF 449 (1601)
Q Consensus 370 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~ 449 (1601)
+.+|. -.| .....|++.|.++.... .-.+.||||.++.+|..|+..+...|.
T Consensus 304 IkQly--------v~C-----------------~~~~~K~~~l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~~Gh 355 (477)
T KOG0332|consen 304 IKQLY--------VLC-----------------ACRDDKYQALVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRAEGH 355 (477)
T ss_pred hhhhe--------eec-----------------cchhhHHHHHHHHHhhh---hhhheEEEEeehhhHHHHHHHHHhcCc
Confidence 11110 000 01156788888865443 345899999999999999999998765
Q ss_pred ccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCC------CHHHHHHHhh
Q 000380 450 LASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE------TVASFIQSRG 523 (1601)
Q Consensus 450 ~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~------s~~~yiQr~G 523 (1601)
. +..+|| +|.-.+|..++++||.|..+|||+|+|+++|||++.+++||+||+|. ++..|+||+|
T Consensus 356 ~-------V~~l~G---~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiG 425 (477)
T KOG0332|consen 356 Q-------VSLLHG---DLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIG 425 (477)
T ss_pred e-------eEEeec---cchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhc
Confidence 2 445565 69999999999999999999999999999999999999999999995 6799999999
Q ss_pred cC-CCCCCeEEE-EEeCCCH-hHHHHHHHH
Q 000380 524 RA-RMPQSEYAF-LVDSGNQ-RELDLIKNF 550 (1601)
Q Consensus 524 RA-R~g~s~~vi-lv~~~~~-~~~~~i~~~ 550 (1601)
|+ |.|+.|.++ |++.++. .....|+++
T Consensus 426 RtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 426 RTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred ccccccccceEEEeecccCcHHHHHHHHHH
Confidence 95 999999998 7765543 334444443
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=279.90 Aligned_cols=418 Identities=19% Similarity=0.218 Sum_probs=265.6
Q ss_pred hhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 56 KQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
...+|+||.+.+.+... -|+|+++.+|.|||++.+.++..+.+. + +..+..||+||...| ..|.++|+++++
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~-~-~~~GPfLVi~P~StL-~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR-K-GIPGPFLVIAPKSTL-DNWMNEFKRFTP 241 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh-c-CCCCCeEEEeeHhhH-HHHHHHHHHhCC
Confidence 35799999999998877 478999999999999999887554432 2 223458999998777 679999999985
Q ss_pred -CcEEEEeCCCCcCCchhhHHhhh--ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHc
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKEI--DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~~~~~~--~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~ 207 (1601)
+++..|+|+... +....++.+ ...+|+|+|+++.++. ..++.--.|.+|||||||++.+ .+....++++.|
T Consensus 242 ~l~~~~~~Gdk~e--R~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN-~~s~L~~~lr~f- 315 (971)
T KOG0385|consen 242 SLNVVVYHGDKEE--RAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKN-EKSKLSKILREF- 315 (971)
T ss_pred CcceEEEeCCHHH--HHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcc-hhhHHHHHHHHh-
Confidence 999999999742 122222222 2479999999999864 4455566799999999999953 223466888888
Q ss_pred CCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe-ecCHHHHhcccCCCeEEEEEecCCCCCCCchhh
Q 000380 208 KPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~-~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 286 (1601)
.....|.+|+||.+ +++.+|.++|+-..-. .++.+++..|+.... . ....
T Consensus 316 -----~~~nrLLlTGTPLQ-----------NNL~ELWaLLnFllPdiF~~~e~F~swF~~~~------------~-~~~~ 366 (971)
T KOG0385|consen 316 -----KTDNRLLLTGTPLQ-----------NNLHELWALLNFLLPDIFNSAEDFDSWFDFTN------------C-EGDQ 366 (971)
T ss_pred -----cccceeEeeCCccc-----------ccHHHHHHHHHhhchhhccCHHHHHHHHcccc------------c-ccCH
Confidence 34678999999954 5678888888754322 234445555433220 0 0001
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHH----HHHHH--HHhcCchhHHHHHHH
Q 000380 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGA----LHASY--ILLSGDETMRNELIE 360 (1601)
Q Consensus 287 ~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~----~~~~~--~~l~~~~~~~~~l~~ 360 (1601)
.....|..+.+.++...+....... +.. ..++-.++. ...++ ++.. + +-.
T Consensus 367 e~v~~Lh~vL~pFlLRR~K~dVe~s------------Lpp-----KkE~~iyvgms~mQkk~Y~~iL~k-d------l~~ 422 (971)
T KOG0385|consen 367 ELVSRLHKVLRPFLLRRIKSDVEKS------------LPP-----KKELIIYVGMSSMQKKWYKAILMK-D------LDA 422 (971)
T ss_pred HHHHHHHhhhhHHHHHHHHHhHhhc------------CCC-----cceeeEeccchHHHHHHHHHHHHh-c------chh
Confidence 1222222222222211111111000 000 001111111 01110 1100 0 000
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccch------hhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecch
Q 000380 361 AEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSC------IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRI 434 (1601)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~------~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r 434 (1601)
..+.... -..-+..+.-.+...|.+...+..... -+.+-. -|+|+..|..+|.... ..|.|+|||.+..
T Consensus 423 ~n~~~~~--~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~--nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt 497 (971)
T KOG0385|consen 423 LNGEGKG--EKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT--NSGKMLVLDKLLPKLK-EQGHRVLIFSQMT 497 (971)
T ss_pred hcccccc--hhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh--cCcceehHHHHHHHHH-hCCCeEEEeHHHH
Confidence 0111100 122344445556666655433333211 112211 2899999999998874 5789999999998
Q ss_pred hhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC---ccEEEEecccccCccCCCccEEEEcCC
Q 000380 435 VTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE---LNLLVATKVGEEGLDIQTCCLVIRFDL 511 (1601)
Q Consensus 435 ~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~---~~vLVaT~vleeGIDip~~~~VI~fd~ 511 (1601)
.+.+.|.++..-.+ +... .+.| +++.++|...++.|.... .-+|++|.+++.|||+..+++||.||.
T Consensus 498 ~mLDILeDyc~~R~----y~yc---RiDG---St~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDS 567 (971)
T KOG0385|consen 498 RMLDILEDYCMLRG----YEYC---RLDG---STSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDS 567 (971)
T ss_pred HHHHHHHHHHHhcC----ceeE---eecC---CCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecC
Confidence 88888888776432 2333 3333 588899999999998754 558999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhHHHHHHHHH
Q 000380 512 PETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRELDLIKNFS 551 (1601)
Q Consensus 512 p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~~~~i~~~~ 551 (1601)
.|||..-+|...|| |.||.+.|. ++++ +..+.+.+++..
T Consensus 568 DWNPQ~DLQAmDRaHRIGQ~K~V~V~RLite-ntVEe~IveRA~ 610 (971)
T KOG0385|consen 568 DWNPQVDLQAMDRAHRIGQKKPVVVYRLITE-NTVEEKIVERAA 610 (971)
T ss_pred CCCchhhhHHHHHHHhhCCcCceEEEEEecc-chHHHHHHHHHH
Confidence 99999999999999 999998765 4444 444445555443
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=299.22 Aligned_cols=317 Identities=24% Similarity=0.378 Sum_probs=236.1
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCChhHHHHHHHHHHHH---
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-----PQKSICIFLAPTVALVQQQAKVIEES--- 128 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~-----~~~~~vl~LvPt~~Lv~Q~~~~l~~~--- 128 (1601)
.|++.|.++++.++. +++|.++-||||||+.+++|+. .+.... ..|+.++|++||++|+.|..+.++++
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmi--rhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMI--RHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchh--hhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 488999999999999 9999999999999999999984 343332 23789999999999999988877765
Q ss_pred cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccC---ccceeEEEEecCccccccCCCh-HHHHHH
Q 000380 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK---MELIALLIFDECHHAQVKSNHP-YAKIMK 204 (1601)
Q Consensus 129 ~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~---l~~i~llI~DEaH~~~~~~~~~-~~~i~~ 204 (1601)
+++++..++|+.....+....++ ++.|+||||+++++.+....-+ +.++.++|+|||+++.+.+..| ...|++
T Consensus 465 l~ir~v~vygg~~~~~qiaelkR---g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~ 541 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKR---GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQ 541 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhc---CCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHh
Confidence 58999999999887666555554 6999999999999987654434 5556699999999998777766 223555
Q ss_pred HHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 205 DFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 205 ~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
... +-.+.+..||| ++..+..|... ....|.+.++.+......
T Consensus 542 nlr-----pdrQtvlfSat------------fpr~m~~la~~----------------vl~~Pveiiv~~~svV~k---- 584 (997)
T KOG0334|consen 542 NLR-----PDRQTVLFSAT------------FPRSMEALARK----------------VLKKPVEIIVGGRSVVCK---- 584 (997)
T ss_pred hcc-----hhhhhhhhhhh------------hhHHHHHHHHH----------------hhcCCeeEEEccceeEec----
Confidence 541 11233444444 44444444221 112344433322211000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcC
Q 000380 285 YVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364 (1601)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 364 (1601)
+
T Consensus 585 ------------------------------------------------------------------~------------- 585 (997)
T KOG0334|consen 585 ------------------------------------------------------------------E------------- 585 (997)
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHH
Q 000380 365 TIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYIL 444 (1601)
Q Consensus 365 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L 444 (1601)
+.+ . +... +....|+..|.++|..+. .+.++||||.....|..|.+-|
T Consensus 586 -----V~q--------------------~---v~V~--~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 586 -----VTQ--------------------V---VRVC--AIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred -----ceE--------------------E---EEEe--cCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHHH
Confidence 000 0 0000 001578888999998764 4789999999999999999999
Q ss_pred HhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc
Q 000380 445 QNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524 (1601)
Q Consensus 445 ~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR 524 (1601)
...+. .| ..+|+| .++.+|..+++.|++|.+++||||+++++|+|++...+||+||.|..+.+|+||.||
T Consensus 634 ~~ag~----~~---~slHGg---v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gR 703 (997)
T KOG0334|consen 634 QKAGY----NC---DSLHGG---VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGR 703 (997)
T ss_pred HhcCc----ch---hhhcCC---CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcc
Confidence 87543 22 237875 889999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCeEEEEEe
Q 000380 525 A-RMPQSEYAFLVD 537 (1601)
Q Consensus 525 A-R~g~s~~vilv~ 537 (1601)
+ |.|.+|+++++-
T Consensus 704 Tgragrkg~AvtFi 717 (997)
T KOG0334|consen 704 TGRAGRKGAAVTFI 717 (997)
T ss_pred cccCCccceeEEEe
Confidence 5 999999988543
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=300.93 Aligned_cols=333 Identities=23% Similarity=0.320 Sum_probs=226.2
Q ss_pred hhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH--HHcCCcE
Q 000380 58 IARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE--ESIGFKV 133 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~--~~~~l~v 133 (1601)
.+.+.|++++..... +|+||++|||+|||++|.+.|.. .+.+. +.+++++||+++||.|.+++++ +.+|++|
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~--~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILS--TLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHH--HHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 577899999988776 89999999999999999999843 33322 5679999999999999999999 5679999
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCCC
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDIM 212 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~~ 212 (1601)
...+|+...... .+.+++|+|+||+.+-.++++....+..+++||+||+|.+.+....+ ...|+.......
T Consensus 107 ~~~TgD~~~~~~------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-- 178 (766)
T COG1204 107 GISTGDYDLDDE------RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-- 178 (766)
T ss_pred EEecCCcccchh------hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC--
Confidence 999999874331 23469999999999988888877778899999999999997653444 444554443322
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
...||+|||||.. +..++...++++... + .|-+.|-.+.+.+...
T Consensus 179 ~~~rivgLSATlp-------------N~~evA~wL~a~~~~-~------~~rp~~l~~~v~~~~~--------------- 223 (766)
T COG1204 179 ELIRIVGLSATLP-------------NAEEVADWLNAKLVE-S------DWRPVPLRRGVPYVGA--------------- 223 (766)
T ss_pred cceEEEEEeeecC-------------CHHHHHHHhCCcccc-c------CCCCcccccCCccceE---------------
Confidence 2279999999972 345666666664331 0 0111110000000000
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
+ ....+.. ....
T Consensus 224 -------------------------------------------------------~----------~~~~~~~---k~~~ 235 (766)
T COG1204 224 -------------------------------------------------------F----------LGADGKK---KTWP 235 (766)
T ss_pred -------------------------------------------------------E----------EEecCcc---cccc
Confidence 0 0000000 0000
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhc----c
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNL----K 448 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~----~ 448 (1601)
.......+..++.. ...+.++||||++|..+...++.|... .
T Consensus 236 --------------------------------~~~~~~~~~~v~~~--~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~ 281 (766)
T COG1204 236 --------------------------------LLIDNLALELVLES--LAEGGQVLVFVHSRKEAEKTAKKLRIKMSATL 281 (766)
T ss_pred --------------------------------ccchHHHHHHHHHH--HhcCCeEEEEEecCchHHHHHHHHHHHHhhcC
Confidence 00001111111222 235789999999999998888888731 0
Q ss_pred ----c------ccccc---------------cceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCc
Q 000380 449 ----F------LASWR---------------CHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTC 503 (1601)
Q Consensus 449 ----~------~~~~~---------------~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~ 503 (1601)
. ...+. ...-+++|+. ++++++|..+.+.|+.|.++||+||+.++.|+|+|+-
T Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA--GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~ 359 (766)
T COG1204 282 SDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA--GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR 359 (766)
T ss_pred ChhhhhhccccccccccccccccchHHHHHHHHhCcccccc--CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcce
Confidence 0 00000 0123456765 6999999999999999999999999999999999998
Q ss_pred cEEE----EcC-----CCCCHHHHHHHhhcC-CCC--CCeEEEEEeCCCH
Q 000380 504 CLVI----RFD-----LPETVASFIQSRGRA-RMP--QSEYAFLVDSGNQ 541 (1601)
Q Consensus 504 ~~VI----~fd-----~p~s~~~yiQr~GRA-R~g--~s~~vilv~~~~~ 541 (1601)
.+|| .|| .+-+..+++|+.||| |-| ..|..+++..+..
T Consensus 360 ~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 360 TVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred EEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 8888 677 566789999999997 766 4566776654433
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=290.67 Aligned_cols=299 Identities=19% Similarity=0.212 Sum_probs=190.0
Q ss_pred hhhHHHHHHHHHHhc-c-CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc------
Q 000380 58 IARKYQLELCKKAME-E-NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI------ 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~-n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~------ 129 (1601)
.|.+||.++++.++. + ++++.+|||||||.++.+++..+ ........++++++||++|+.|.++.++++.
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 399999999999998 4 57788999999998654333211 1111223466678899999999999887654
Q ss_pred --------------------CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcccc--------------
Q 000380 130 --------------------GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-------------- 175 (1601)
Q Consensus 130 --------------------~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~-------------- 175 (1601)
++++..++|+.+.. ..|...-.+++|||+|++.+ .++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~---~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADN---DEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChH---HHHHhcCCCCcEEEECHHHH----cCCccccccccccccccch
Confidence 26788899997753 34666556789999996544 33333
Q ss_pred --CccceeEEEEecCccccccCCChHHHHHHHHcCCC--CC-C-CCEEEEEeccccCCCCCccccchHHHHHHHHHhccC
Q 000380 176 --KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD--IM-K-VPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA 249 (1601)
Q Consensus 176 --~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~--~~-~-~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~ 249 (1601)
.+.++.+||+|||| + ..+ +...+..+.... .. . ..+++.||||+... +..+...+..
T Consensus 166 ag~L~~v~~LVLDEAD-L-d~g---F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e------------i~~l~~~~~~ 228 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH-L-EPA---FQELLKQIMNEQQRPPDFLPLRVVELTATSRTD------------GPDRTTLLSA 228 (844)
T ss_pred hhhhccceEEEEehhh-h-ccc---cHHHHHHHHHhcccCcccccceEEEEecCCCcc------------HHHHHHHHcc
Confidence 16789999999999 3 233 443333333311 11 1 14799999997321 1112111110
Q ss_pred -eE-EeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhh
Q 000380 250 -KV-YSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDS 327 (1601)
Q Consensus 250 -~~-~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 327 (1601)
.. ..+.. .....+... .+.+.
T Consensus 229 ~p~~i~V~~-----~~l~a~ki~--q~v~v-------------------------------------------------- 251 (844)
T TIGR02621 229 EDYKHPVLK-----KRLAAKKIV--KLVPP-------------------------------------------------- 251 (844)
T ss_pred CCceeeccc-----ccccccceE--EEEec--------------------------------------------------
Confidence 00 00000 000000000 00000
Q ss_pred HHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCH
Q 000380 328 MKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSK 407 (1601)
Q Consensus 328 ~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~ 407 (1601)
+ ...
T Consensus 252 -----------------------~-----------------------------------------------------~e~ 255 (844)
T TIGR02621 252 -----------------------S-----------------------------------------------------DEK 255 (844)
T ss_pred -----------------------C-----------------------------------------------------hHH
Confidence 0 000
Q ss_pred HHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHH-----HHHHHHhc
Q 000380 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMK-----SILEKFRS 482 (1601)
Q Consensus 408 K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~-----~~l~~Fr~ 482 (1601)
|+..+...+.......+.++||||+++..|+.+++.|++.+ +..+|+ +|++.+|. .++++|++
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---------~~lLHG---~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---------FELLTG---TLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---------CeEeeC---CCCHHHHhhHHHHHHHHHHhc
Confidence 11111111111001235689999999999999999998643 145677 59999999 78999987
Q ss_pred ----CC-------ccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCC
Q 000380 483 ----GE-------LNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQS 530 (1601)
Q Consensus 483 ----g~-------~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s 530 (1601)
|+ .+|||||+++++||||+. ++||++..| ..+|+||+||+ |.|+.
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 54 689999999999999986 899988766 68999999995 99875
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=256.30 Aligned_cols=328 Identities=22% Similarity=0.367 Sum_probs=233.4
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCcE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFKV 133 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~v 133 (1601)
.|...|..++..+.+ .|+++.+++|+|||.++..+++. +.--......+++++||++|+.|..++.... .+.++
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq--~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v 125 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQ--QIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSV 125 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHh--hcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceee
Confidence 356789999888888 99999999999999998888743 2211112346899999999999988766654 46788
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCC
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK 213 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~ 213 (1601)
..+.|+.+.......... ..++|+|+||+++.+.+..+.+....+.+.|+||++.++..+ +..-+.......+ +
T Consensus 126 ~~~igg~~~~~~~~~i~~--~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g---fkdqI~~if~~lp-~ 199 (397)
T KOG0327|consen 126 HACIGGTNVRREDQALLK--DKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG---FKDQIYDIFQELP-S 199 (397)
T ss_pred eeecCcccchhhhhhhhc--cCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc---hHHHHHHHHHHcC-c
Confidence 888888765433222222 358999999999999999998889999999999999996433 3433333322222 2
Q ss_pred CCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHH
Q 000380 214 VPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLA 293 (1601)
Q Consensus 214 ~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (1601)
..+++.+|||- +..+..+.+ +|...|....+...... ++
T Consensus 200 ~vQv~l~SAT~------------p~~vl~vt~----------------~f~~~pv~i~vkk~~lt-------------l~ 238 (397)
T KOG0327|consen 200 DVQVVLLSATM------------PSDVLEVTK----------------KFMREPVRILVKKDELT-------------LE 238 (397)
T ss_pred chhheeecccC------------cHHHHHHHH----------------HhccCceEEEecchhhh-------------hh
Confidence 34788899984 222333322 23333322222111000 00
Q ss_pred HHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHH
Q 000380 294 EIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRF 373 (1601)
Q Consensus 294 ~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 373 (1601)
.+.+|
T Consensus 239 ---------------------------------------------------------------------------gikq~ 243 (397)
T KOG0327|consen 239 ---------------------------------------------------------------------------GIKQF 243 (397)
T ss_pred ---------------------------------------------------------------------------heeee
Confidence 00000
Q ss_pred HHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccccc
Q 000380 374 ASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453 (1601)
Q Consensus 374 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~ 453 (1601)
. +...+ ..|+..|.++.+. -...+||||++..+..+...|...+..
T Consensus 244 ~----------------------i~v~k----~~k~~~l~dl~~~-----~~q~~if~nt~r~v~~l~~~L~~~~~~--- 289 (397)
T KOG0327|consen 244 Y----------------------INVEK----EEKLDTLCDLYRR-----VTQAVIFCNTRRKVDNLTDKLRAHGFT--- 289 (397)
T ss_pred e----------------------eeccc----cccccHHHHHHHh-----hhcceEEecchhhHHHHHHHHhhCCce---
Confidence 0 00000 2266667766652 347999999999999999999765432
Q ss_pred ccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeE
Q 000380 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEY 532 (1601)
Q Consensus 454 ~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~ 532 (1601)
+..+|+ +|.+.+|..++..|++|..+|||.|+.+++|||+..|.+||+||+|.+..+|+||+||+ |.|..|.
T Consensus 290 ----~s~~~~---d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~ 362 (397)
T KOG0327|consen 290 ----VSAIHG---DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV 362 (397)
T ss_pred ----EEEeec---ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce
Confidence 445566 59999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred EE-EEeCCCHhHHHHHHHH
Q 000380 533 AF-LVDSGNQRELDLIKNF 550 (1601)
Q Consensus 533 vi-lv~~~~~~~~~~i~~~ 550 (1601)
++ ++++.+....+.++++
T Consensus 363 ~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 363 AINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred eeeeehHhhHHHHHhHHHh
Confidence 98 7776666666655543
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-27 Score=258.88 Aligned_cols=322 Identities=20% Similarity=0.253 Sum_probs=233.9
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCChhHHHHHHHHHHH---HcCC
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEE---SIGF 131 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~-~~~~~vl~LvPt~~Lv~Q~~~~l~~---~~~l 131 (1601)
..|.|.|...++.+++ ++++..+-||+|||.++++|+.+ ++... ..+-+++++.||++|+.|..+.+++ .+++
T Consensus 42 ~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e--~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~l 119 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIE--KLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKL 119 (529)
T ss_pred CCCCchhcccccceeeccccceeeecCCcchhhHHHHHHH--HHhhccccccceeeccCcHHHHHHHHHHHHHhccccch
Confidence 3588999999999999 89999999999999999999954 33222 3466899999999999998887765 4578
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~ 211 (1601)
+...++|+... .+.|.....++|||++||++++.......+.++.+.+|||||++++.++| |..-+.+.....+
T Consensus 120 r~s~~~ggD~~---eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg---fqeql~e~l~rl~ 193 (529)
T KOG0337|consen 120 RQSLLVGGDSI---EEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG---FQEQLHEILSRLP 193 (529)
T ss_pred hhhhhcccchH---HHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh---hHHHHHHHHHhCC
Confidence 88888887664 34577666789999999999988776667889999999999999998665 3333333333233
Q ss_pred CCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcc-cCCCeEEEEEecCCCCCCCchhhhHHH
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESF-VSSPVVRVYQYGPVINDTSSSYVTCSE 290 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (1601)
.. .+.+.+|||..+. +-. ..+- ...|.......... +.
T Consensus 194 ~~-~QTllfSatlp~~------------lv~-----------------fakaGl~~p~lVRldvetk----------is- 232 (529)
T KOG0337|consen 194 ES-RQTLLFSATLPRD------------LVD-----------------FAKAGLVPPVLVRLDVETK----------IS- 232 (529)
T ss_pred Cc-ceEEEEeccCchh------------hHH-----------------HHHccCCCCceEEeehhhh----------cc-
Confidence 33 3788899996321 100 0000 11111110000000 00
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHH
Q 000380 291 QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSL 370 (1601)
Q Consensus 291 ~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 370 (1601)
+..
T Consensus 233 -----------------------------------------------------------------------------e~l 235 (529)
T KOG0337|consen 233 -----------------------------------------------------------------------------ELL 235 (529)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred H-HHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc
Q 000380 371 C-RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF 449 (1601)
Q Consensus 371 ~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~ 449 (1601)
+ .|+ . . ....|...|+.++.... .+.++||||.++.+++.+...|...+.
T Consensus 236 k~~f~-------~-----------------~---~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~g~ 286 (529)
T KOG0337|consen 236 KVRFF-------R-----------------V---RKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDFGG 286 (529)
T ss_pred hhhee-------e-----------------e---ccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhcCC
Confidence 0 000 0 0 00467888888887753 256899999999999999999987653
Q ss_pred ccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc-CCCC
Q 000380 450 LASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMP 528 (1601)
Q Consensus 450 ~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g 528 (1601)
.+..+ .+ ++++..|..-+.+|+.++.++||.|+++.+|+|||-.+.||+||.|....-|+||+|| ||+|
T Consensus 287 ----~~s~i---ys---slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 287 ----EGSDI---YS---SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAG 356 (529)
T ss_pred ----Ccccc---cc---ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcc
Confidence 22222 22 5899999999999999999999999999999999999999999999999999999999 5999
Q ss_pred CCeEEE-EEeCCCHhH
Q 000380 529 QSEYAF-LVDSGNQRE 543 (1601)
Q Consensus 529 ~s~~vi-lv~~~~~~~ 543 (1601)
.+|..+ +|..++.-+
T Consensus 357 rtg~aYs~V~~~~~~y 372 (529)
T KOG0337|consen 357 RTGRAYSLVASTDDPY 372 (529)
T ss_pred ccceEEEEEecccchh
Confidence 999887 666555433
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=271.76 Aligned_cols=304 Identities=19% Similarity=0.202 Sum_probs=190.3
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCc-----CCc---
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKR-----LKS--- 145 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~-----~~~--- 145 (1601)
+++|.+|||+|||.+|.+++... .....+.+++|++|+++|+.|+++.++..++.+++.++|+... ..+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~---~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHS---IKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH---HhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 47999999999999999998542 2234466899999999999999999999887777777665321 000
Q ss_pred -hhhHHhh------hccCeEEEEcHHHHHHHHhccc----cCccc--eeEEEEecCccccccCCChHHHHHHHHcCCCCC
Q 000380 146 -HCDWEKE------IDQYEVLVMIPQILLYCLYHRF----IKMEL--IALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 146 -~~~~~~~------~~~~~VlV~Tp~~l~~~l~~~~----~~l~~--i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~ 212 (1601)
...|... ....+|+|+||+.+++.+.+.. +.+.. .++|||||||.+...+...+..+++.+. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~----~ 153 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK----D 153 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH----H
Confidence 0111110 1236899999999988766521 11222 3799999999996433223444444432 1
Q ss_pred CCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHH
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
...++++||||+. +.+.++......... + ..+... ..
T Consensus 154 ~~~~~i~~SATlp------------~~l~~~~~~~~~~~~--------------~----~~~~~~-----~~-------- 190 (358)
T TIGR01587 154 NDVPILLMSATLP------------KFLKEYAEKIGYVEF--------------N----EPLDLK-----EE-------- 190 (358)
T ss_pred cCCCEEEEecCch------------HHHHHHHhcCCCccc--------------c----cCCCCc-----cc--------
Confidence 2367899999972 112221111000000 0 000000 00
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCR 372 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 372 (1601)
.... .. .
T Consensus 191 ~~~~----------------------------------------------------------~~---------------~ 197 (358)
T TIGR01587 191 RRFE----------------------------------------------------------RH---------------R 197 (358)
T ss_pred cccc----------------------------------------------------------cc---------------c
Confidence 0000 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccc
Q 000380 373 FASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452 (1601)
Q Consensus 373 ~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~ 452 (1601)
+. ........|...+.+++... ..+.++||||+++..++.+++.|++.+.
T Consensus 198 ~~-------------------------~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~--- 247 (358)
T TIGR01587 198 FI-------------------------KIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP--- 247 (358)
T ss_pred ce-------------------------eeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC---
Confidence 00 00000012233334444332 2457999999999999999999987532
Q ss_pred cccceEEeccCCCCcCCHHHHHH----HHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CC
Q 000380 453 WRCHFLVGVNAGLKSMSRNAMKS----ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527 (1601)
Q Consensus 453 ~~~~~~vg~~~g~~~~~~~~r~~----~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~ 527 (1601)
...+..+||+ +++.+|.+ ++++|++|+.++||||+++++|||++ +++||+++.| +.+|+||+||+ |.
T Consensus 248 --~~~~~~~h~~---~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~ 319 (358)
T TIGR01587 248 --EEEIMLLHSR---FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRY 319 (358)
T ss_pred --CCeEEEEECC---CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCC
Confidence 1135566774 78777765 58999999999999999999999995 8999998776 78999999995 88
Q ss_pred CCC----eEEEEEeC
Q 000380 528 PQS----EYAFLVDS 538 (1601)
Q Consensus 528 g~s----~~vilv~~ 538 (1601)
|+. +.++++..
T Consensus 320 g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 320 GRKNGENFEVYIITI 334 (358)
T ss_pred CCCCCCCCeEEEEee
Confidence 754 25555543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=292.10 Aligned_cols=348 Identities=18% Similarity=0.256 Sum_probs=201.8
Q ss_pred hhhhHHHHHHHHHHhc------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 57 QIARKYQLELCKKAME------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
+.+|+||.++++++.+ ++++|+++||||||++++.++.. +++....+++|||||+++|+.|+.+.|..+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~---L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR---LLKAKRFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH---HHhcCccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 5699999999977753 57999999999999998877644 33344457899999999999999999987621
Q ss_pred C---cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-----ccCccceeEEEEecCccccc------cC-
Q 000380 131 F---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-----FIKMELIALLIFDECHHAQV------KS- 195 (1601)
Q Consensus 131 l---~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-----~~~l~~i~llI~DEaH~~~~------~~- 195 (1601)
. .+..+++.... .. .. .-...+|+|+|+|.+.+.+... ...+.++++||+|||||... .+
T Consensus 489 ~~~~~~~~i~~i~~L-~~---~~-~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 489 EGDQTFASIYDIKGL-ED---KF-PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred ccccchhhhhchhhh-hh---hc-ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 1 11111111100 00 00 0124789999999998765321 24567899999999999631 00
Q ss_pred ---------CChHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhc-ccC
Q 000380 196 ---------NHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLES-FVS 265 (1601)
Q Consensus 196 ---------~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~-~~~ 265 (1601)
-..|+.++..| + ..+|||||||.... ..+++..++..+-.+.+.. +..
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF------d-A~~IGLTATP~r~t---------------~~~FG~pv~~Ysl~eAI~DG~Lv 621 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF------D-AVKIGLTATPALHT---------------TEIFGEPVYTYSYREAVIDGYLI 621 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc------C-ccEEEEecCCccch---------------hHHhCCeeEEeeHHHHHhcCCcc
Confidence 12467777754 1 35799999996422 2345554544333333332 222
Q ss_pred C---CeEEEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHH
Q 000380 266 S---PVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALH 342 (1601)
Q Consensus 266 ~---p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~ 342 (1601)
+ |......+... ...... .+.+..+.... ..+. ...+...+.+.
T Consensus 622 ~~~~p~~i~t~~~~~--gi~~~~---~e~~~~~~~~~------~~i~-----------~~~l~d~~~~~----------- 668 (1123)
T PRK11448 622 DHEPPIRIETRLSQE--GIHFEK---GEEVEVINTQT------GEID-----------LATLEDEVDFE----------- 668 (1123)
T ss_pred cCcCCEEEEEEeccc--cccccc---cchhhhcchhh------hhhh-----------hccCcHHHhhh-----------
Confidence 1 11111100000 000000 00000000000 0000 00000000000
Q ss_pred HHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHH----HHHHHHHhh
Q 000380 343 ASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKL----LRLIGILST 418 (1601)
Q Consensus 343 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~----~~L~~lL~~ 418 (1601)
...+-... +. .... ..+.+.+..
T Consensus 669 ---------------------------~~~~~~~v---i~-----------------------~~~~~~i~~~l~~~l~~ 695 (1123)
T PRK11448 669 ---------------------------VEDFNRRV---IT-----------------------ESFNRVVCEELAKYLDP 695 (1123)
T ss_pred ---------------------------HHHHHHHH---hh-----------------------HHHHHHHHHHHHHHHhc
Confidence 00000000 00 0001 112222221
Q ss_pred cccCCCceEEEEecchhhHHHHHHHHHhcccc--cccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc-cEEEEecccc
Q 000380 419 FRLQQHMKCIVFVNRIVTARALSYILQNLKFL--ASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL-NLLVATKVGE 495 (1601)
Q Consensus 419 ~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~--~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~-~vLVaT~vle 495 (1601)
..+.|+||||.++.+|+.+.+.|.+.... .++....+..++++ + .++.+++++|+++.. +|+|+++++.
T Consensus 696 ---~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~---~--~~~~~li~~Fk~~~~p~IlVsvdmL~ 767 (1123)
T PRK11448 696 ---TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGS---I--DKPDQLIRRFKNERLPNIVVTVDLLT 767 (1123)
T ss_pred ---cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCC---c--cchHHHHHHHhCCCCCeEEEEecccc
Confidence 22469999999999999999988764211 12233344445553 3 345789999999886 6999999999
Q ss_pred cCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCC
Q 000380 496 EGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMP 528 (1601)
Q Consensus 496 eGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g 528 (1601)
+|+|+|.|++||.++++.|...|+|++||+ |.-
T Consensus 768 TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 768 TGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 999999999999999999999999999997 864
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=263.85 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcc---CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc-------CC
Q 000380 62 YQLELCKKAMEE---NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI-------GF 131 (1601)
Q Consensus 62 yQ~e~~~~~l~~---n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-------~l 131 (1601)
||.++++.+.+. ++++++|||+|||.+|++++.. .+.+++|++|+++|++||++.+++++ +.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 699999999983 3789999999999999988742 13358999999999999999998876 46
Q ss_pred cEEEEeCCCCcC---Cc---------h---hhHHhh--hccCeEEEEcHHHHHHHHhcccc--------CccceeEEEEe
Q 000380 132 KVRTFCGGSKRL---KS---------H---CDWEKE--IDQYEVLVMIPQILLYCLYHRFI--------KMELIALLIFD 186 (1601)
Q Consensus 132 ~v~~~~G~~~~~---~~---------~---~~~~~~--~~~~~VlV~Tp~~l~~~l~~~~~--------~l~~i~llI~D 186 (1601)
.+..++|+.... .. . ..++.. ...++|+++||++|..++.+.+. .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 677788863211 00 0 011111 23578999999999876654321 14689999999
Q ss_pred cCccccccCCChHH---HHHHHHcCCCCCCCCEEEEEeccc
Q 000380 187 ECHHAQVKSNHPYA---KIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 187 EaH~~~~~~~~~~~---~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
|+|.+..+....+. ..+..+... ...+++++|||||
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~lSAT~ 191 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF--ECRRKFVFLSATP 191 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh--hcCCcEEEEecCC
Confidence 99998532221111 222221111 1136899999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=276.99 Aligned_cols=316 Identities=18% Similarity=0.235 Sum_probs=196.2
Q ss_pred hHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHH-------HHHH--hc-CCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYE-------LAHL--IR-KPQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 60 R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~-------l~~~--~~-~~~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
...|.++++.+++ +++|+.++||+|||.+.-..+.+ +..+ .. ....+++++++||++||.|....+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 4678889999887 99999999999999873222221 1111 11 223568999999999999999998775
Q ss_pred cC------CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHH
Q 000380 129 IG------FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKI 202 (1601)
Q Consensus 129 ~~------l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i 202 (1601)
.+ .++...+|+.... .........+|+|+|++.. ...++++++|||||||.....++ ....+
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~----~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~D-llL~l 313 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDE----LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIGD-IIIAV 313 (675)
T ss_pred hCccccCCceEEEEECCcchH----HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccchh-HHHHH
Confidence 43 4577888887621 1111122468999997631 12477899999999999864332 12223
Q ss_pred HHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCC
Q 000380 203 MKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDT 281 (1601)
Q Consensus 203 ~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 281 (1601)
++.. ....++++.||||+. ..++.+...++ +....+... ...|....+ ........
T Consensus 314 lk~~----~~~~rq~ILmSATl~------------~dv~~l~~~~~~p~~I~I~gr------t~~pV~~~y-i~~~~~~~ 370 (675)
T PHA02653 314 ARKH----IDKIRSLFLMTATLE------------DDRDRIKEFFPNPAFVHIPGG------TLFPISEVY-VKNKYNPK 370 (675)
T ss_pred HHHh----hhhcCEEEEEccCCc------------HhHHHHHHHhcCCcEEEeCCC------cCCCeEEEE-eecCcccc
Confidence 3222 112358999999972 12334444443 222222110 001111111 10000000
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHh
Q 000380 282 SSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEA 361 (1601)
Q Consensus 282 ~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~ 361 (1601)
..
T Consensus 371 -~~----------------------------------------------------------------------------- 372 (675)
T PHA02653 371 -NK----------------------------------------------------------------------------- 372 (675)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHH
Q 000380 362 EGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALS 441 (1601)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~ 441 (1601)
..|+. ..|. .+...+.......+.++|||++++..++.+.
T Consensus 373 ---------~~y~~------------------------------~~k~-~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~ 412 (675)
T PHA02653 373 ---------RAYIE------------------------------EEKK-NIVTALKKYTPPKGSSGIVFVASVSQCEEYK 412 (675)
T ss_pred ---------hhhhH------------------------------HHHH-HHHHHHHHhhcccCCcEEEEECcHHHHHHHH
Confidence 00000 0000 0111111111123458999999999999999
Q ss_pred HHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHH-hcCCccEEEEecccccCccCCCccEEEEcC---CCC----
Q 000380 442 YILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKF-RSGELNLLVATKVGEEGLDIQTCCLVIRFD---LPE---- 513 (1601)
Q Consensus 442 ~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~F-r~g~~~vLVaT~vleeGIDip~~~~VI~fd---~p~---- 513 (1601)
+.|.... .+ -.+..+||+ +++. ++++++| ++|+.+|||||+++|+|||||++++||++| .|.
T Consensus 413 ~~L~~~~--~~---~~v~~LHG~---Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 413 KYLEKRL--PI---YDFYIIHGK---VPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHhhc--CC---ceEEeccCC---cCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 9998652 01 125677874 7764 4677887 789999999999999999999999999998 565
Q ss_pred -----CHHHHHHHhhcC-CCCCCeEEE-EEeCC
Q 000380 514 -----TVASFIQSRGRA-RMPQSEYAF-LVDSG 539 (1601)
Q Consensus 514 -----s~~~yiQr~GRA-R~g~s~~vi-lv~~~ 539 (1601)
|..+|+||+||| |. ++|.++ +++++
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 888999999996 88 678777 66544
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=288.84 Aligned_cols=338 Identities=23% Similarity=0.286 Sum_probs=230.5
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc---C--C
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---G--F 131 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~--l 131 (1601)
.++.||.++++.+.+ +|+||+.+||||||.+|++|| +.++++.+ ..++|+|.||++|+++|.++++++. + +
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPI--ld~~l~~~-~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v 146 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPI--LDHLLRDP-SARALLLYPTNALANDQAERLRELISDLPGKV 146 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHH--HHHHhhCc-CccEEEEechhhhHhhHHHHHHHHHHhCCCcc
Confidence 389999999999999 899999999999999999999 55666655 4479999999999999999999875 3 7
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc----ccCccceeEEEEecCccccccCCChHHHHHHHHc
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR----FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~----~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~ 207 (1601)
.+..|+|+......+.... ..++|+++||++|...+... .+.++++++||+||+|-..+-.....+.+++++.
T Consensus 147 ~~~~y~Gdt~~~~r~~~~~---~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~ 223 (851)
T COG1205 147 TFGRYTGDTPPEERRAIIR---NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLL 223 (851)
T ss_pred eeeeecCCCChHHHHHHHh---CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHH
Confidence 8899999987644432222 46899999999998755443 2346789999999999994332233445555443
Q ss_pred CCC--CCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe-ecCHHHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 208 KPD--IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 208 ~~~--~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~-~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
+.. ....|++++.|||..+.+. ..+.+++..... +... ..+......+.+.|........
T Consensus 224 ~~~~~~~~~~q~i~~SAT~~np~e------------~~~~l~~~~f~~~v~~~-----g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 224 RRLRRYGSPLQIICTSATLANPGE------------FAEELFGRDFEVPVDED-----GSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred HHHhccCCCceEEEEeccccChHH------------HHHHhcCCcceeeccCC-----CCCCCceEEEEeCCcchhhhhh
Confidence 321 1346899999999844321 223333333322 2111 1222333444444421100000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcC
Q 000380 285 YVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364 (1601)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 364 (1601)
+.
T Consensus 287 ----------~r-------------------------------------------------------------------- 288 (851)
T COG1205 287 ----------IR-------------------------------------------------------------------- 288 (851)
T ss_pred ----------cc--------------------------------------------------------------------
Confidence 00
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHH
Q 000380 365 TIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYIL 444 (1601)
Q Consensus 365 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L 444 (1601)
..+...+..+.... ..++.++|+|+.++..++.+....
T Consensus 289 -----------------------------------------~s~~~~~~~~~~~~-~~~~~~tL~F~~sr~~~e~~~~~~ 326 (851)
T COG1205 289 -----------------------------------------RSALAELATLAALL-VRNGIQTLVFFRSRKQVELLYLSP 326 (851)
T ss_pred -----------------------------------------cchHHHHHHHHHHH-HHcCceEEEEEehhhhhhhhhhch
Confidence 00000000111100 135679999999999999997333
Q ss_pred Hhcccccc-cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCC-CHHHHHHHh
Q 000380 445 QNLKFLAS-WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE-TVASFIQSR 522 (1601)
Q Consensus 445 ~~~~~~~~-~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~-s~~~yiQr~ 522 (1601)
...-...+ .-...+..+++ ++..++|.++...|+.|++.++++|++++-||||.+++.||....|. +..+++||.
T Consensus 327 ~~~~~~~~~~l~~~v~~~~~---~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~ 403 (851)
T COG1205 327 RRRLVREGGKLLDAVSTYRA---GLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRA 403 (851)
T ss_pred hHHHhhcchhhhhheeeccc---cCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhh
Confidence 22211000 00012333344 59999999999999999999999999999999999999999999999 999999999
Q ss_pred hcC-CCCCCeEEEEEeCCCH
Q 000380 523 GRA-RMPQSEYAFLVDSGNQ 541 (1601)
Q Consensus 523 GRA-R~g~s~~vilv~~~~~ 541 (1601)
||| |.++...++++...+.
T Consensus 404 GRaGR~~~~~l~~~v~~~~~ 423 (851)
T COG1205 404 GRAGRRGQESLVLVVLRSDP 423 (851)
T ss_pred hhccCCCCCceEEEEeCCCc
Confidence 996 9998888887665443
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=271.11 Aligned_cols=413 Identities=18% Similarity=0.230 Sum_probs=252.7
Q ss_pred hhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 56 KQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
...+|+||.+.+.+.+. +|+|++.++|.|||+..+..+..+.+..+- .+..|++||...+ .-|.++|..+++
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~--~gpflvvvplst~-~~W~~ef~~w~~ 444 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI--HGPFLVVVPLSTI-TAWEREFETWTD 444 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc--cCCeEEEeehhhh-HHHHHHHHHHhh
Confidence 35799999998876655 899999999999999999988665544322 2348999998555 569999999999
Q ss_pred CcEEEEeCCCCcCCchhhHHhhhc------cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHH
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEID------QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMK 204 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~~~~~~~------~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~ 204 (1601)
+++.+|+|+.......+.+.-... ..+++++|+++++.. ..++.--.+.+++|||||++.+...+.|.. +.
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~ 521 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKNDESKLYES-LN 521 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCchHHHHHHH-HH
Confidence 999999999764332222221122 368999999998752 334555578999999999996444444554 55
Q ss_pred HHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe-ecCHHHHhcccCCCeEEEEEecCCCCCCCc
Q 000380 205 DFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRVYQYGPVINDTSS 283 (1601)
Q Consensus 205 ~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~-~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 283 (1601)
.| ...+.|.+|+||. ++++.+|.++++-..-. ....+++..-... ....
T Consensus 522 ~f------~~~~rllitgTPl-----------QNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------~~e~ 571 (1373)
T KOG0384|consen 522 QF------KMNHRLLITGTPL-----------QNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------ETEE 571 (1373)
T ss_pred Hh------cccceeeecCCCc-----------cccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------hhHH
Confidence 55 3356788999994 45688888887642211 1111111110000 0001
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccc----c-hh-----hhh-HHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCch
Q 000380 284 SYVTCSEQLAEIKREQYISALSRKLHD----H-QS-----LRN-TTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDE 352 (1601)
Q Consensus 284 ~~~~~~~~l~~i~~~~~~~~l~~~~~~----~-~~-----~~~-~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~ 352 (1601)
.+..+.+.|+ ..+...+.+.... . .+ +-. .++..+.+..+-...+ .-|.-+
T Consensus 572 ~~~~L~~~L~----P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~L-tKG~~g------------- 633 (1373)
T KOG0384|consen 572 QVRKLQQILK----PFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSAL-TKGAKG------------- 633 (1373)
T ss_pred HHHHHHHHhh----HHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHH-hccCCC-------------
Confidence 1122222222 2221222222111 0 00 111 1122222211100000 000000
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCC--------ccc-------hhhhccCCCCCHHHHHHHHHHh
Q 000380 353 TMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIAS--------DLS-------CIEVLKEPFFSKKLLRLIGILS 417 (1601)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--------~~~-------~~~~l~~~~~s~K~~~L~~lL~ 417 (1601)
...++ + .+.-.|...|.+..... ++. -...+ ..|+|+-.|..+|.
T Consensus 634 -------------~~~~l---L-NimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI---~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 634 -------------STPSL---L-NIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI---QSSGKLVLLDKLLP 693 (1373)
T ss_pred -------------CCchH---H-HHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH---HhcCcEEeHHHHHH
Confidence 00000 0 00000111111100000 000 00000 01788888888888
Q ss_pred hcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcC---CccEEEEeccc
Q 000380 418 TFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG---ELNLLVATKVG 494 (1601)
Q Consensus 418 ~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g---~~~vLVaT~vl 494 (1601)
..+ ..|+|||||.+.+.+.+.|+++|...++ ....+.| .+..+-|+.+|+.|..- ..-+|+||.++
T Consensus 694 rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~y----pfQRLDG------svrgelRq~AIDhFnap~SddFvFLLSTRAG 762 (1373)
T KOG0384|consen 694 RLK-EGGHRVLIFSQMVRMLDILAEYLSLRGY----PFQRLDG------SVRGELRQQAIDHFNAPDSDDFVFLLSTRAG 762 (1373)
T ss_pred HHh-cCCceEEEhHHHHHHHHHHHHHHHHcCC----cceeccC------CcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence 774 5689999999999999999999987543 3344433 47778999999999863 47799999999
Q ss_pred ccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhHHHHHHHHHHhH
Q 000380 495 EEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRELDLIKNFSKEE 554 (1601)
Q Consensus 495 eeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~~~~i~~~~~~e 554 (1601)
+.|||+..++.||.||..|||..-+|...|| |.||+..|- ||+.+ .-+.+++++.....
T Consensus 763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~-TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN-TVEEEILERAKLKM 825 (1373)
T ss_pred cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC-chHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999998774 55544 55666777665443
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=278.53 Aligned_cols=304 Identities=20% Similarity=0.206 Sum_probs=195.0
Q ss_pred HHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCc
Q 000380 64 LELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKR 142 (1601)
Q Consensus 64 ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~ 142 (1601)
.++++.+.. +++|+.++||||||.++.+++.+ .. ..+.+++++.||+.+|.|.++.+.+.++..++...|..-.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~--~~---~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLD--AP---GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH--hh---ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 345555544 78999999999999999998844 22 1345899999999999999999987665443333332111
Q ss_pred CCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcc-ccccCCChHHHHHHHHcCCCCCCCCEEEEEe
Q 000380 143 LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHH-AQVKSNHPYAKIMKDFYKPDIMKVPRIFGMT 221 (1601)
Q Consensus 143 ~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLT 221 (1601)
.... .-.+.+|+|+|+++|++.+.+. ..++++++|||||+|. ..+ .+-- ..+++...... ....+++.||
T Consensus 83 ~~~~-----~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~-~Dl~-L~ll~~i~~~l-r~dlqlIlmS 153 (819)
T TIGR01970 83 GENK-----VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLD-ADLG-LALALDVQSSL-REDLKILAMS 153 (819)
T ss_pred cccc-----cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhc-cchH-HHHHHHHHHhc-CCCceEEEEe
Confidence 0000 0124789999999999988764 5789999999999995 432 1111 11222221111 1236899999
Q ss_pred ccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHHHH
Q 000380 222 ASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300 (1601)
Q Consensus 222 ATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 300 (1601)
||... ..+...++ +.++.+..+ ..|... .|.+...
T Consensus 154 ATl~~--------------~~l~~~l~~~~vI~~~gr-------~~pVe~--~y~~~~~--------------------- 189 (819)
T TIGR01970 154 ATLDG--------------ERLSSLLPDAPVVESEGR-------SFPVEI--RYLPLRG--------------------- 189 (819)
T ss_pred CCCCH--------------HHHHHHcCCCcEEEecCc-------ceeeee--EEeecch---------------------
Confidence 99721 12333332 222222111 001110 0100000
Q ss_pred HHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 000380 301 ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEV 380 (1601)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 380 (1601)
..++.
T Consensus 190 ----------------------------------------------------------------------~~~~~----- 194 (819)
T TIGR01970 190 ----------------------------------------------------------------------DQRLE----- 194 (819)
T ss_pred ----------------------------------------------------------------------hhhHH-----
Confidence 00000
Q ss_pred HHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEe
Q 000380 381 FAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVG 460 (1601)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg 460 (1601)
......+..++.. ...++|||++++..++.+++.|.+... .. -.+..
T Consensus 195 -------------------------~~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~-~~---~~v~p 241 (819)
T TIGR01970 195 -------------------------DAVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD-SD---VLICP 241 (819)
T ss_pred -------------------------HHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC-CC---cEEEE
Confidence 0000112222222 245799999999999999999986311 01 12556
Q ss_pred ccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCC------------------HHHHHHHh
Q 000380 461 VNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPET------------------VASFIQSR 522 (1601)
Q Consensus 461 ~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s------------------~~~yiQr~ 522 (1601)
+|+ +|++++|.++++.|++|+.+|||||+++|+|||||++++||+++.|.. ..+++||+
T Consensus 242 LHg---~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~ 318 (819)
T TIGR01970 242 LYG---ELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRA 318 (819)
T ss_pred ecC---CCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhh
Confidence 777 599999999999999999999999999999999999999999998752 35699999
Q ss_pred hcC-CCCCCeEEE-EEe
Q 000380 523 GRA-RMPQSEYAF-LVD 537 (1601)
Q Consensus 523 GRA-R~g~s~~vi-lv~ 537 (1601)
||| |. +.|.|+ |++
T Consensus 319 GRAGR~-~~G~cyrL~t 334 (819)
T TIGR01970 319 GRAGRL-EPGVCYRLWS 334 (819)
T ss_pred hhcCCC-CCCEEEEeCC
Confidence 997 77 788887 665
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=277.49 Aligned_cols=301 Identities=20% Similarity=0.248 Sum_probs=193.3
Q ss_pred HHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC----cEEEEeC
Q 000380 64 LELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF----KVRTFCG 138 (1601)
Q Consensus 64 ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l----~v~~~~G 138 (1601)
.++++.+.+ +++|+.++||||||.++.+++.+ .. ....++++++||+.+|.|.++.+.+.++. .|+...+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~--~~---~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQ--HG---GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH--cC---CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 345555544 78999999999999999888743 21 12347999999999999999999776554 4444444
Q ss_pred CCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEE
Q 000380 139 GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIF 218 (1601)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~il 218 (1601)
+..... .+.+|+|+|+++|++.+... ..++++++|||||+|...-..+-... ++....... .+..+++
T Consensus 86 ~~~~~~---------~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~-ll~~i~~~l-r~~lqli 153 (812)
T PRK11664 86 AESKVG---------PNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALA-LLLDVQQGL-RDDLKLL 153 (812)
T ss_pred CccccC---------CCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHH-HHHHHHHhC-CccceEE
Confidence 432111 13679999999999988764 57899999999999974211111111 111111111 1236899
Q ss_pred EEeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHH
Q 000380 219 GMTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKR 297 (1601)
Q Consensus 219 gLTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 297 (1601)
.||||+.. ..+...+. +.++.+..+ ..|... .|.+.. .
T Consensus 154 lmSATl~~--------------~~l~~~~~~~~~I~~~gr-------~~pV~~--~y~~~~-----~------------- 192 (812)
T PRK11664 154 IMSATLDN--------------DRLQQLLPDAPVIVSEGR-------SFPVER--RYQPLP-----A------------- 192 (812)
T ss_pred EEecCCCH--------------HHHHHhcCCCCEEEecCc-------cccceE--EeccCc-----h-------------
Confidence 99999721 12333332 222211110 001000 000000 0
Q ss_pred HHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHH
Q 000380 298 EQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQA 377 (1601)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 377 (1601)
. ..+...+
T Consensus 193 -----------------------------------------------------~----------------~~~~~~v--- 200 (812)
T PRK11664 193 -----------------------------------------------------H----------------QRFDEAV--- 200 (812)
T ss_pred -----------------------------------------------------h----------------hhHHHHH---
Confidence 0 0000000
Q ss_pred HHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccce
Q 000380 378 SEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHF 457 (1601)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~ 457 (1601)
...+.+++.. ....+|||++++..++.+++.|..... ..+ .
T Consensus 201 -------------------------------~~~l~~~l~~----~~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~---~ 241 (812)
T PRK11664 201 -------------------------------ARATAELLRQ----ESGSLLLFLPGVGEIQRVQEQLASRVA-SDV---L 241 (812)
T ss_pred -------------------------------HHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHHhcc-CCc---e
Confidence 0011222221 246899999999999999999986211 111 2
Q ss_pred EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCC------------------HHHHH
Q 000380 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPET------------------VASFI 519 (1601)
Q Consensus 458 ~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s------------------~~~yi 519 (1601)
+..+|+ +++.++|.++++.|++|+.+|||||+++|+|||||++++||+++.+.. ..+|+
T Consensus 242 v~~Lhg---~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 318 (812)
T PRK11664 242 LCPLYG---ALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMT 318 (812)
T ss_pred EEEeeC---CCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhh
Confidence 455677 599999999999999999999999999999999999999999887653 35899
Q ss_pred HHhhcC-CCCCCeEEE-EEe
Q 000380 520 QSRGRA-RMPQSEYAF-LVD 537 (1601)
Q Consensus 520 Qr~GRA-R~g~s~~vi-lv~ 537 (1601)
||+||| |. +.|.|+ +++
T Consensus 319 QR~GRaGR~-~~G~cyrL~t 337 (812)
T PRK11664 319 QRAGRAGRL-EPGICLHLYS 337 (812)
T ss_pred hhccccCCC-CCcEEEEecC
Confidence 999997 76 688888 555
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=252.96 Aligned_cols=430 Identities=18% Similarity=0.191 Sum_probs=255.3
Q ss_pred hhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-Cc
Q 000380 59 ARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG-FK 132 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~-l~ 132 (1601)
+-+||.+.++++.+ ...|+.+++|.|||++.+..+..+.+-- .--+++|||||. .++.||.+++..+.+ ++
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--KLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--cccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 67999999998877 4579999999999999888876654421 112579999995 899999999999875 89
Q ss_pred EEEEeCCCCc-----CCchhhHHhh-----hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHH
Q 000380 133 VRTFCGGSKR-----LKSHCDWEKE-----IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKI 202 (1601)
Q Consensus 133 v~~~~G~~~~-----~~~~~~~~~~-----~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i 202 (1601)
|.+++|.... ......|... .....|+++|++.+.- ....+.-..|+++|+||.|++.+ .+......
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrN-pns~isla 359 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRN-PNSKISLA 359 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccC-CccHHHHH
Confidence 9999887552 1111223322 2345799999997742 22234445689999999999953 33445555
Q ss_pred HHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEE-eecCHHHHhcccCCCeEEEEEecCCCCCC
Q 000380 203 MKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVY-SVEDAEDLESFVSSPVVRVYQYGPVINDT 281 (1601)
Q Consensus 203 ~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~-~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 281 (1601)
++.+ ...+.++||+||+ ++++.+|.++++-..- .......+.+....|... -.|....+..
T Consensus 360 ckki------~T~~RiILSGTPi-----------QNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~-GgyaNAs~~q 421 (923)
T KOG0387|consen 360 CKKI------RTVHRIILSGTPI-----------QNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINR-GGYANASPRQ 421 (923)
T ss_pred HHhc------cccceEEeeCccc-----------cchHHHHHHHhhhccCCcccchHHHHhhhhhheec-cccCCCCHHH
Confidence 6655 3467888999995 4568899988875331 122222222222222111 0111000000
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHH----HHHhhhhhHHHHHHHHHhcCchhHHHH
Q 000380 282 SSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKF----CLENLGVCGALHASYILLSGDETMRNE 357 (1601)
Q Consensus 282 ~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~lg~~~~~~~~~~~l~~~~~~~~~ 357 (1601)
....-.....|..+-...+ |+++...... --++.=+||.....+..+.........
T Consensus 422 v~~aykca~~Lr~lI~Pyl--------------------LRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~ 481 (923)
T KOG0387|consen 422 VQTAYKCAVALRDLISPYL--------------------LRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSE 481 (923)
T ss_pred HHHHHHHHHHHHHHhHHHH--------------------HHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHH
Confidence 0000011111111111111 1111111110 001112233322222211111110000
Q ss_pred HHHh-hcCCCchHHHHHHHHHHHHHHHHHhcCCCCC----ccchhhhc-cCCCCCHHHHHHHHHHhhcccCCCceEEEEe
Q 000380 358 LIEA-EGNTIDDSLCRFASQASEVFAAICRRDGIAS----DLSCIEVL-KEPFFSKKLLRLIGILSTFRLQQHMKCIVFV 431 (1601)
Q Consensus 358 l~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~~l-~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv 431 (1601)
+... +|... +.--..++...|.+..... +...-+.. ..+..+.|+..+..+|..+. ..+.++|+|.
T Consensus 482 v~~i~ng~~~-------~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvllFs 553 (923)
T KOG0387|consen 482 VNKILNGKRN-------CLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLLFS 553 (923)
T ss_pred HHHHHcCCcc-------ceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEEeh
Confidence 0000 00000 0001123344443322111 11111111 23334899999999999774 4577999999
Q ss_pred cchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC--ccEEEEecccccCccCCCccEEEEc
Q 000380 432 NRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE--LNLLVATKVGEEGLDIQTCCLVIRF 509 (1601)
Q Consensus 432 ~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~--~~vLVaT~vleeGIDip~~~~VI~f 509 (1601)
+++.+...|..+|... .++.+..+.| ..+...|...+++|.+++ .-+|++|.|++.|+|+..+|-||.|
T Consensus 554 qs~~mLdilE~fL~~~---~~ysylRmDG------tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf 624 (923)
T KOG0387|consen 554 QSRQMLDILESFLRRA---KGYSYLRMDG------TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF 624 (923)
T ss_pred hHHHHHHHHHHHHHhc---CCceEEEecC------CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEE
Confidence 9999999999999852 2233333333 467788999999999887 3478899999999999999999999
Q ss_pred CCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhHHHHHHH
Q 000380 510 DLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRELDLIKN 549 (1601)
Q Consensus 510 d~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~~~~i~~ 549 (1601)
|+.|||..-.|.+-|| |.||.+-|+ +++.+..++...-++
T Consensus 625 DPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 625 DPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred CCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 9999999999999999 999998664 667777666544333
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=283.46 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=193.7
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc---CCc
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~l~ 132 (1601)
..|+++|.++++.+++ +|+++++|||+|||..++.++.. +. ..+.+++||+||++|+.|+++.++++. ++.
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~---l~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLY---LA--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHH---HH--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 4689999999999998 89999999999999644433221 11 236789999999999999999998875 466
Q ss_pred EEEEeCCCCc--CCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC------------
Q 000380 133 VRTFCGGSKR--LKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH------------ 197 (1601)
Q Consensus 133 v~~~~G~~~~--~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~------------ 197 (1601)
+..+.|+.+. ......+.... .+++|+|+||+.|.+.+. .+...++++||+||||+++.++..
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCH
Confidence 7777766442 12222233222 248999999999998776 456677999999999999753211
Q ss_pred -hHHHHHHHHcCC-------------------CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCH
Q 000380 198 -PYAKIMKDFYKP-------------------DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDA 257 (1601)
Q Consensus 198 -~~~~i~~~~~~~-------------------~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~ 257 (1601)
....++...... ......+++.+|||....... ...+...+. +.+...
T Consensus 232 ~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~---------~~l~~~ll~---~~v~~~ 299 (1176)
T PRK09401 232 EDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR---------VKLFRELLG---FEVGSP 299 (1176)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH---------HHHhhccce---EEecCc
Confidence 122233222100 001135677778876321100 000000000 000000
Q ss_pred HHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhh
Q 000380 258 EDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGV 337 (1601)
Q Consensus 258 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~ 337 (1601)
.
T Consensus 300 -------------------~------------------------------------------------------------ 300 (1176)
T PRK09401 300 -------------------V------------------------------------------------------------ 300 (1176)
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHh
Q 000380 338 CGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILS 417 (1601)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~ 417 (1601)
....++.++ .+. ...|...|.+++.
T Consensus 301 ---------------------------~~~rnI~~~-------------------------yi~---~~~k~~~L~~ll~ 325 (1176)
T PRK09401 301 ---------------------------FYLRNIVDS-------------------------YIV---DEDSVEKLVELVK 325 (1176)
T ss_pred ---------------------------cccCCceEE-------------------------EEE---cccHHHHHHHHHH
Confidence 000000000 000 0135556666666
Q ss_pred hcccCCCceEEEEecchhh---HHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEE----
Q 000380 418 TFRLQQHMKCIVFVNRIVT---ARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVA---- 490 (1601)
Q Consensus 418 ~~~~~~~~k~IIFv~~r~~---a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVa---- 490 (1601)
.. +..+||||+++.. ++.+++.|+..+.. +..+|++ | .+.+++|++|+++||||
T Consensus 326 ~l----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-------v~~~hg~---l-----~~~l~~F~~G~~~VLVatas~ 386 (1176)
T PRK09401 326 RL----GDGGLIFVPSDKGKEYAEELAEYLEDLGIN-------AELAISG---F-----ERKFEKFEEGEVDVLVGVASY 386 (1176)
T ss_pred hc----CCCEEEEEecccChHHHHHHHHHHHHCCCc-------EEEEeCc---H-----HHHHHHHHCCCCCEEEEecCC
Confidence 54 2479999999888 99999999986542 4456775 5 23469999999999999
Q ss_pred ecccccCccCCC-ccEEEEcCCCC------CHHHHHHHhhcC
Q 000380 491 TKVGEEGLDIQT-CCLVIRFDLPE------TVASFIQSRGRA 525 (1601)
Q Consensus 491 T~vleeGIDip~-~~~VI~fd~p~------s~~~yiQr~GRA 525 (1601)
|+++++|||+|+ +++||+||.|. ....|.||.||.
T Consensus 387 tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~ 428 (1176)
T PRK09401 387 YGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRL 428 (1176)
T ss_pred CCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHH
Confidence 699999999999 89999999998 668899999994
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=250.58 Aligned_cols=443 Identities=19% Similarity=0.232 Sum_probs=256.9
Q ss_pred CCCchhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 52 DKDPKQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 52 ~~~~~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
...+.+++.+||+-.+.+..- -|.|++.++|.|||.+++..+.. +.+.+....-|||||...| +.|.++|.
T Consensus 393 ~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlay---Lkq~g~~gpHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 393 LLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAY---LKQIGNPGPHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred ccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHH---HHHcCCCCCcEEEecchhH-HHHHHHHH
Confidence 345667799999998876643 47899999999999999887543 3333334568999999776 77999999
Q ss_pred HHcC-CcEEEEeCCCCcCCch-hhHHhhhccCeEEEEcHHHHHHH-HhccccCccceeEEEEecCccccccCCChHHHHH
Q 000380 127 ESIG-FKVRTFCGGSKRLKSH-CDWEKEIDQYEVLVMIPQILLYC-LYHRFIKMELIALLIFDECHHAQVKSNHPYAKIM 203 (1601)
Q Consensus 127 ~~~~-l~v~~~~G~~~~~~~~-~~~~~~~~~~~VlV~Tp~~l~~~-l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~ 203 (1601)
++++ ++|..|+|........ ....+.-...+|+|+||+.+..- -.+.+++-.+++++|+||+|.+.+.....|+.+|
T Consensus 469 kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 469 KWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred HhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 9996 8999999997542221 22233234689999999987632 2344677788999999999999776667788888
Q ss_pred HHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccC---eEEeecCHHHHhc-ccCCCeEEEEEecCCCC
Q 000380 204 KDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA---KVYSVEDAEDLES-FVSSPVVRVYQYGPVIN 279 (1601)
Q Consensus 204 ~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~---~~~~~~~~~~l~~-~~~~p~~~~~~~~~~~~ 279 (1601)
.. +....|.||+||..+ ++.+|.++|.- .++.. ..+++.. |..++.-
T Consensus 549 ~I-------~An~RlLLTGTPLQN-----------NL~ELiSLL~FvlP~vF~~-~~~dl~~if~~k~~~---------- 599 (941)
T KOG0389|consen 549 SI-------NANFRLLLTGTPLQN-----------NLKELISLLAFVLPKVFDS-SMEDLDVIFKAKKTS---------- 599 (941)
T ss_pred cc-------cccceEEeeCCcccc-----------cHHHHHHHHHHHhhHhhhc-cchHHHHHHhccCCc----------
Confidence 75 345678899999554 45566555542 22221 1112221 1111100
Q ss_pred CCCchhhhHHHH-H------------HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhH-------
Q 000380 280 DTSSSYVTCSEQ-L------------AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCG------- 339 (1601)
Q Consensus 280 ~~~~~~~~~~~~-l------------~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~------- 339 (1601)
+.......+.+. + ++++.+.+ ..|..+....+......++...+.+-+......++..+
T Consensus 600 d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL-~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~ 678 (941)
T KOG0389|consen 600 DGDIENALLSQERISRAKTIMKPFILRRLKSQVL-KQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS 678 (941)
T ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc
Confidence 000000011111 1 12222211 22222222211100000111111110000000000000
Q ss_pred -----HHHHH--HHHhcCchhHHH------HHHHhhcCCCchHHHHHHHHHHHHHH-----HHHhcCCCCCccchhhhcc
Q 000380 340 -----ALHAS--YILLSGDETMRN------ELIEAEGNTIDDSLCRFASQASEVFA-----AICRRDGIASDLSCIEVLK 401 (1601)
Q Consensus 340 -----~~~~~--~~~l~~~~~~~~------~l~~~~~~~~~~~~~~~l~~~~~~l~-----~~~~~~~~~~~~~~~~~l~ 401 (1601)
..+.+ +-++....|... ..+..+..-.. .-.+|+-+-...+. ..|..-. .+.....-.
T Consensus 679 ~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~-~n~qyIfEDm~~msDfelHqLc~~f~---~~~~f~L~d 754 (941)
T KOG0389|consen 679 GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKK-ANEQYIFEDMEVMSDFELHQLCCQFR---HLSKFQLKD 754 (941)
T ss_pred chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhh-cCHHHHHHHHHhhhHHHHHHHHHhcC---CCcccccCC
Confidence 00000 000000000000 00000000000 00122222211111 1111100 111111001
Q ss_pred CC-CCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHH
Q 000380 402 EP-FFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKF 480 (1601)
Q Consensus 402 ~~-~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~F 480 (1601)
++ .-|.|+..|..+|.+.. .+|.|++||.+...+.+.|...|..++.. ...+.| ...-..|+.+++.|
T Consensus 755 ~~~mdSgK~r~L~~LLp~~k-~~G~RVLiFSQFTqmLDILE~~L~~l~~~-------ylRLDG---sTqV~~RQ~lId~F 823 (941)
T KOG0389|consen 755 DLWMDSGKCRKLKELLPKIK-KKGDRVLIFSQFTQMLDILEVVLDTLGYK-------YLRLDG---STQVNDRQDLIDEF 823 (941)
T ss_pred chhhhhhhHhHHHHHHHHHh-hcCCEEEEeeHHHHHHHHHHHHHHhcCce-------EEeecC---CccchHHHHHHHhh
Confidence 11 23899999999999874 56799999999999999999999987542 334444 47778999999999
Q ss_pred hcCC--ccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhH
Q 000380 481 RSGE--LNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRE 543 (1601)
Q Consensus 481 r~g~--~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~ 543 (1601)
...+ .-+|++|.+++-|||+..+|+||.||...||-.-.|.-.|| |.||.+-|. +++.+..++
T Consensus 824 n~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 824 NTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 9876 44789999999999999999999999999999999999999 999998664 666665543
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=255.16 Aligned_cols=354 Identities=19% Similarity=0.299 Sum_probs=227.8
Q ss_pred hhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHh-----cCCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000380 59 ARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLI-----RKPQKSICIFLAPTVALVQQQAKVIEESI-- 129 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~-----~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-- 129 (1601)
+-..|.++++.+.+ .|.||++|||+|||.+|.+.|+...+.. -....-++++|+|+++||....+.+.+.+
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 45789999999999 8999999999999999999986543321 01234589999999999999888887654
Q ss_pred -CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcccc----CccceeEEEEecCccccccCCChHHHHHH
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI----KMELIALLIFDECHHAQVKSNHPYAKIMK 204 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~----~l~~i~llI~DEaH~~~~~~~~~~~~i~~ 204 (1601)
|++|..++|++..... ....++|+|+||+.+ +...+... -++.+.|||+||+|.+.++.......|+.
T Consensus 191 ~gi~v~ELTGD~ql~~t------ei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVa 263 (1230)
T KOG0952|consen 191 LGISVRELTGDTQLTKT------EIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVA 263 (1230)
T ss_pred ccceEEEecCcchhhHH------HHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHH
Confidence 7999999999864332 234599999999987 44444322 25779999999999997654444555655
Q ss_pred HHcCC--CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCC-eEEEEEe----cCC
Q 000380 205 DFYKP--DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSP-VVRVYQY----GPV 277 (1601)
Q Consensus 205 ~~~~~--~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p-~~~~~~~----~~~ 277 (1601)
+..+. .....-||+|||||. .+.+++..|..-+ ..-+..| +|.
T Consensus 264 Rtlr~vessqs~IRivgLSATl------------------------------PN~eDvA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATL------------------------------PNYEDVARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccC------------------------------CCHHHHHHHhcCCCccceeeeccccccc
Confidence 54322 123457999999997 1223344443332 2222222 222
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHH
Q 000380 278 INDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNE 357 (1601)
Q Consensus 278 ~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~ 357 (1601)
.-... .+|.-+. ..
T Consensus 314 pL~~~---------------------------------------------------~iG~k~~--------------~~- 327 (1230)
T KOG0952|consen 314 PLTQG---------------------------------------------------FIGIKGK--------------KN- 327 (1230)
T ss_pred ceeee---------------------------------------------------EEeeecc--------------cc-
Confidence 10000 0000000 00
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhH
Q 000380 358 LIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTA 437 (1601)
Q Consensus 358 l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a 437 (1601)
... ...+. ..+...+.+.+ ..+.+++|||.+|..+
T Consensus 328 -----------~~~------~~~~d-----------------------~~~~~kv~e~~-----~~g~qVlvFvhsR~~T 362 (1230)
T KOG0952|consen 328 -----------RQQ------KKNID-----------------------EVCYDKVVEFL-----QEGHQVLVFVHSRNET 362 (1230)
T ss_pred -----------hhh------hhhHH-----------------------HHHHHHHHHHH-----HcCCeEEEEEecChHH
Confidence 000 00000 11222233333 2477999999999988
Q ss_pred HHHHHHHHhcccccc-----ccc---c-------eEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCC
Q 000380 438 RALSYILQNLKFLAS-----WRC---H-------FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQT 502 (1601)
Q Consensus 438 ~~L~~~L~~~~~~~~-----~~~---~-------~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~ 502 (1601)
...++.|.+.....+ +.. . ..+|+|+. +|..++|.-+.+.|..|.++||+||+.++.|+|+|+
T Consensus 363 i~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhA--Gm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA 440 (1230)
T KOG0952|consen 363 IRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHA--GMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA 440 (1230)
T ss_pred HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccc--ccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc
Confidence 888888876532111 111 1 34667765 699999999999999999999999999999999998
Q ss_pred ccEEE----EcCCCC------CHHHHHHHhhcC-CC--CCCeEEEEEeCCCHhH--HHHHHHHHHhHHHHHHHhh
Q 000380 503 CCLVI----RFDLPE------TVASFIQSRGRA-RM--PQSEYAFLVDSGNQRE--LDLIKNFSKEEDRMNREIM 562 (1601)
Q Consensus 503 ~~~VI----~fd~p~------s~~~yiQr~GRA-R~--g~s~~vilv~~~~~~~--~~~i~~~~~~e~~l~~~~~ 562 (1601)
--++| .||.-. ...+-+|..||| |- ..+|.+++++..+..+ ..++....-.|.++...+.
T Consensus 441 ~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~ 515 (1230)
T KOG0952|consen 441 YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLI 515 (1230)
T ss_pred eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHH
Confidence 77776 344432 346778999997 53 4678888887766532 2333333334444444443
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=251.41 Aligned_cols=309 Identities=21% Similarity=0.273 Sum_probs=210.7
Q ss_pred hhhhHHHHHHHHHHhc-------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
+.+...|..++..+.. .|=++.++.|||||++|++.+.... ..|..+.+.+||--||+|.++.+.+++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-----~~G~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-----EAGYQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-----HcCCeeEEeccHHHHHHHHHHHHHHHh
Confidence 5577899999988877 3569999999999999999885432 247789999999999999999999986
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhcc-CeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~~-~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
|++|..++|......++........+ .+|+|+|...+ +..+.+.++.|+|+||=|+.+. + .+..+..
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRFGV---~-QR~~L~~ 406 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRFGV---H-QRLALRE 406 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccccH---H-HHHHHHH
Confidence 68999999998876666666665555 79999996644 4567789999999999999842 2 1222222
Q ss_pred HcCCCCCC-CCEEEEEeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCc
Q 000380 206 FYKPDIMK-VPRIFGMTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSS 283 (1601)
Q Consensus 206 ~~~~~~~~-~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 283 (1601)
+.. .|++|.|||||+.+.-.. ... .-|+ +.+-.. -....|.......
T Consensus 407 -----KG~~~Ph~LvMTATPIPRTLAl---------t~f-gDldvS~IdEl-------P~GRkpI~T~~i~--------- 455 (677)
T COG1200 407 -----KGEQNPHVLVMTATPIPRTLAL---------TAF-GDLDVSIIDEL-------PPGRKPITTVVIP--------- 455 (677)
T ss_pred -----hCCCCCcEEEEeCCCchHHHHH---------HHh-ccccchhhccC-------CCCCCceEEEEec---------
Confidence 123 699999999997653220 000 0000 000000 0001111111000
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhc
Q 000380 284 SYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEG 363 (1601)
Q Consensus 284 ~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~ 363 (1601)
T Consensus 456 -------------------------------------------------------------------------------- 455 (677)
T COG1200 456 -------------------------------------------------------------------------------- 455 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchh--------
Q 000380 364 NTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIV-------- 435 (1601)
Q Consensus 364 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~-------- 435 (1601)
..+...+.+.+.+. ..++.++.+.|+-++
T Consensus 456 ------------------------------------------~~~~~~v~e~i~~e-i~~GrQaY~VcPLIeESE~l~l~ 492 (677)
T COG1200 456 ------------------------------------------HERRPEVYERIREE-IAKGRQAYVVCPLIEESEKLELQ 492 (677)
T ss_pred ------------------------------------------cccHHHHHHHHHHH-HHcCCEEEEEeccccccccchhh
Confidence 00000111111110 124567777777554
Q ss_pred hHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCC-C
Q 000380 436 TARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE-T 514 (1601)
Q Consensus 436 ~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~-s 514 (1601)
.|..++..|+.. -+++.+|+-+| .|+..++++++++|++|+++|||||.|.|.|||+|++++.|..|.-. -
T Consensus 493 ~a~~~~~~L~~~------~~~~~vgL~HG--rm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFG 564 (677)
T COG1200 493 AAEELYEELKSF------LPELKVGLVHG--RMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFG 564 (677)
T ss_pred hHHHHHHHHHHH------cccceeEEEec--CCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhh
Confidence 455556666532 23445666555 79999999999999999999999999999999999999998766532 4
Q ss_pred HHHHHHHhhc-CCCCCCeEEEEEeCCCH
Q 000380 515 VASFIQSRGR-ARMPQSEYAFLVDSGNQ 541 (1601)
Q Consensus 515 ~~~yiQr~GR-AR~g~s~~vilv~~~~~ 541 (1601)
..+.-|-+|| +|.+..+||+++.....
T Consensus 565 LaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 565 LAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 5899999999 59988999997754433
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=266.88 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=118.1
Q ss_pred hhhhhHHHHHHHHHHhc----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000380 56 KQIARKYQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l 131 (1601)
...++++|.++++.+.+ +++++.++||+|||.+++.++.+... .++++|||+|+++|+.|+.+.+++.++.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----~g~~vLvLvPt~~L~~Q~~~~l~~~fg~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----QGKQALVLVPEIALTPQMLARFRARFGA 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34689999999999986 57999999999999999887754321 2678999999999999999999998899
Q ss_pred cEEEEeCCCCcCCchhhHHhhhcc-CeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCC-Ch-H--HHHHHHH
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSN-HP-Y--AKIMKDF 206 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~-~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~-~--~~i~~~~ 206 (1601)
++..++|+.+...+...|.+...+ .+|+|+|+..+ +..+.++++||+||+|....+.. .+ | +.+....
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 999999998876667788776543 79999999765 35678999999999999854322 22 2 2222111
Q ss_pred cCCCCCCCCEEEEEeccc
Q 000380 207 YKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP 224 (1601)
. .. ....++.+||||
T Consensus 290 -a-~~-~~~~~il~SATp 304 (679)
T PRK05580 290 -A-KL-ENIPVVLGSATP 304 (679)
T ss_pred -h-hc-cCCCEEEEcCCC
Confidence 1 11 224577779999
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=252.43 Aligned_cols=434 Identities=16% Similarity=0.189 Sum_probs=256.8
Q ss_pred hhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeCChhHHHHHHHHH
Q 000380 56 KQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-----QKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~-----~~~~vl~LvPt~~Lv~Q~~~~l 125 (1601)
...+|.||+|.+.+.-- -+.|+|+++|.|||++.+..+.. .+..++. .....||+||. .|+.-|..++
T Consensus 973 ~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAs-d~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~ 1050 (1549)
T KOG0392|consen 973 SAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILAS-DHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEV 1050 (1549)
T ss_pred hHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHH-HHHhhcccchhhccCCeEEECCc-hhhhHHHHHH
Confidence 45699999999876522 58999999999999999887642 1222211 12348999996 8999999999
Q ss_pred HHHcC-CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHH
Q 000380 126 EESIG-FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMK 204 (1601)
Q Consensus 126 ~~~~~-l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~ 204 (1601)
.++++ ++|..|.|.... +...+..+.+++|+|++|+.+.+... ++.-.+|+++|+||.|-+.+ +.....+.++
T Consensus 1051 ~kf~pfL~v~~yvg~p~~---r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN-~ktkl~kavk 1124 (1549)
T KOG0392|consen 1051 KKFFPFLKVLQYVGPPAE---RRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKN-SKTKLTKAVK 1124 (1549)
T ss_pred HHhcchhhhhhhcCChHH---HHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecc-hHHHHHHHHH
Confidence 99998 588889888643 23355566779999999999986543 23345789999999999953 2333445555
Q ss_pred HHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe-ecCHHHHhcccCCCeEEEEEecCCCCCCCc
Q 000380 205 DFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRVYQYGPVINDTSS 283 (1601)
Q Consensus 205 ~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~-~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 283 (1601)
.+ ...+.+.||+||++++ +.+|+++++--.-. .....+...-..+|......-.... .
T Consensus 1125 qL------~a~hRLILSGTPIQNn-----------vleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Ss----k 1183 (1549)
T KOG0392|consen 1125 QL------RANHRLILSGTPIQNN-----------VLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSS----K 1183 (1549)
T ss_pred HH------hhcceEEeeCCCcccC-----------HHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccch----h
Confidence 55 2356788999997654 55777777643221 1222233333344432221111111 1
Q ss_pred hhhhHHHHHHHHHHHHH---HHHhhhhcccchhhhhHHHHHHHHhhhHHHHH-HhhhhhHHHHHHHHHhcCchhHHH---
Q 000380 284 SYVTCSEQLAEIKREQY---ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCL-ENLGVCGALHASYILLSGDETMRN--- 356 (1601)
Q Consensus 284 ~~~~~~~~l~~i~~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~lg~~~~~~~~~~~l~~~~~~~~--- 356 (1601)
..++=.-.++.+.++-+ .+.+. ...++.+..+++... =++|+.. ..+..+...+.
T Consensus 1184 e~EaG~lAleaLHKqVLPF~LRRlK------------edVL~DLPpKIIQDyyCeLs~lQ------~kLY~df~~~~k~~ 1245 (1549)
T KOG0392|consen 1184 EQEAGVLALEALHKQVLPFLLRRLK------------EDVLKDLPPKIIQDYYCELSPLQ------KKLYRDFVKKAKQC 1245 (1549)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH------------HHHHhhCChhhhhheeeccCHHH------HHHHHHHHHHhccc
Confidence 11111111111111111 00000 011111111111100 0111111 11111100000
Q ss_pred -HHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCC-----CCccch----hh----hccCCCCCHHHHHHHHHHhhcccC
Q 000380 357 -ELIEAEGNTIDDSLCRFASQASEVFAAICRRDGI-----ASDLSC----IE----VLKEPFFSKKLLRLIGILSTFRLQ 422 (1601)
Q Consensus 357 -~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-----~~~~~~----~~----~l~~~~~s~K~~~L~~lL~~~~~~ 422 (1601)
......+..+.......+-++...+...|.+... ..++.. +. .+.+-..++|+.+|.++|.++...
T Consensus 1246 ~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig 1325 (1549)
T KOG0392|consen 1246 VSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIG 1325 (1549)
T ss_pred cccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCC
Confidence 0000000001110122333444444444433211 111100 00 111112389999999999876533
Q ss_pred -------------CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC-ccEE
Q 000380 423 -------------QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE-LNLL 488 (1601)
Q Consensus 423 -------------~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~-~~vL 488 (1601)
.++|++|||+-+.+++.+.+-|.+... ..-....+.| +.++.+|.+++++|.++. +.||
T Consensus 1326 ~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m----psVtymRLDG---SVpp~~R~kiV~~FN~DptIDvL 1398 (1549)
T KOG0392|consen 1326 NNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM----PSVTYMRLDG---SVPPGDRQKIVERFNEDPTIDVL 1398 (1549)
T ss_pred CCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc----CceeEEEecC---CCCcHHHHHHHHHhcCCCceeEE
Confidence 357999999999999999887765321 1111234455 589999999999999994 7765
Q ss_pred E-EecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhH
Q 000380 489 V-ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRE 543 (1601)
Q Consensus 489 V-aT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~ 543 (1601)
+ +|.|++.|+|+.++|.||.++-.|||..-+|.+.|| |.||.+.|- +++++..+|
T Consensus 1399 lLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1399 LLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred EEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 5 779999999999999999999999999999999999 999998763 677777655
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=252.92 Aligned_cols=135 Identities=21% Similarity=0.305 Sum_probs=100.3
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhhhc-
Q 000380 76 IVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID- 154 (1601)
Q Consensus 76 Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~~~- 154 (1601)
++.++||+|||.+++.++.... . .++++|||+|+++|+.|+++.+++.++.++..++|+.+...+...|.+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l---~--~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL---A--LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH---H--cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 4789999999999987764432 1 367899999999999999999999989999999999887677778887654
Q ss_pred cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC-h-HHH-HHHHHcCCCCCCCCEEEEEeccc
Q 000380 155 QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH-P-YAK-IMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 155 ~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~-~-~~~-i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
..+|+|+|+..+ +..+.++++|||||+|+...++.. + |.. -+..+... . ....++++||||
T Consensus 76 ~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~-~~~~vil~SATP 139 (505)
T TIGR00595 76 EILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-K-FNCPVVLGSATP 139 (505)
T ss_pred CCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-h-cCCCEEEEeCCC
Confidence 368999999865 346789999999999998644322 2 321 11111110 1 124577789999
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=283.60 Aligned_cols=130 Identities=16% Similarity=0.210 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc-----CC
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI-----GF 131 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-----~l 131 (1601)
.|++.|.+++..+++ +|+++.+|||+|||+.++++...+ ...+++++||+||++|+.|+++.++.+. ++
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-----~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-----ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-----HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 589999999999999 999999999999999655544221 1235689999999999999999998854 45
Q ss_pred cEEEEeCCCCcCCchhhHHhhhc-cCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccccc
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVK 194 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~-~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~ 194 (1601)
++..++|+.+...+...|..... .++|+|+||+.|.+.+... . ..+++++|+||||+++.+
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccc
Confidence 67788898876555555655444 3899999999998765532 2 267999999999999753
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=239.44 Aligned_cols=320 Identities=21% Similarity=0.213 Sum_probs=215.6
Q ss_pred hhhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCC
Q 000380 57 QIARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGF 131 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l 131 (1601)
..+.|.|.-++++-+- +|.+|+.+|+||||+++-++= +.+++. .+++.|||||.++|++|.++.|++. +++
T Consensus 215 ~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAG--i~~~l~--~g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAG--IPRLLS--GGKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhC--cHHHHh--CCCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 3477899999988765 899999999999999987764 233332 3678999999999999999999864 467
Q ss_pred cEEEEeCCCCcCCchhh-HHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCC-ChHHHHHHHHcCC
Q 000380 132 KVRTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSN-HPYAKIMKDFYKP 209 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~-~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~~~i~~~~~~~ 209 (1601)
++.+-.|.......... -...-.++||||+|++-+-.+++.+ ..+.+++.+||||+|.+-+... +....++.++...
T Consensus 291 kvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l 369 (830)
T COG1202 291 KVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL 369 (830)
T ss_pred eEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHh
Confidence 88777776543222110 0111135899999999987777776 6789999999999999954322 3344444443221
Q ss_pred CCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 210 DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
. +--++++||||..+. .+|...|+++...-..+ +-|.++.+.+....
T Consensus 370 ~--~~AQ~i~LSATVgNp-------------~elA~~l~a~lV~y~~R-------PVplErHlvf~~~e----------- 416 (830)
T COG1202 370 F--PGAQFIYLSATVGNP-------------EELAKKLGAKLVLYDER-------PVPLERHLVFARNE----------- 416 (830)
T ss_pred C--CCCeEEEEEeecCCh-------------HHHHHHhCCeeEeecCC-------CCChhHeeeeecCc-----------
Confidence 1 135799999998432 35666666654432221 11111111111000
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchH
Q 000380 290 EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS 369 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 369 (1601)
T Consensus 417 -------------------------------------------------------------------------------- 416 (830)
T COG1202 417 -------------------------------------------------------------------------------- 416 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhh-----cccCCCceEEEEecchhhHHHHHHHH
Q 000380 370 LCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILST-----FRLQQHMKCIVFVNRIVTARALSYIL 444 (1601)
Q Consensus 370 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~-----~~~~~~~k~IIFv~~r~~a~~L~~~L 444 (1601)
+.|...+..+.+. ....-..++|||+++|..+..|+..|
T Consensus 417 ------------------------------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L 460 (830)
T COG1202 417 ------------------------------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADAL 460 (830)
T ss_pred ------------------------------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHh
Confidence 1111111111110 00112358999999999999999999
Q ss_pred HhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEE---EcCC-CCCHHHHHH
Q 000380 445 QNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVI---RFDL-PETVASFIQ 520 (1601)
Q Consensus 445 ~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI---~fd~-p~s~~~yiQ 520 (1601)
...+.. ...+|+| ++..+|+.+...|.++++.++|+|.+++-|+|+|+-.+|+ -++. .-|++.|.|
T Consensus 461 ~~kG~~-------a~pYHaG---L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~Q 530 (830)
T COG1202 461 TGKGLK-------AAPYHAG---LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQ 530 (830)
T ss_pred hcCCcc-------cccccCC---CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHH
Confidence 976542 3456876 9999999999999999999999999999999999877654 2333 348999999
Q ss_pred HhhcC-CCC--CCeEEE-EEeCCC
Q 000380 521 SRGRA-RMP--QSEYAF-LVDSGN 540 (1601)
Q Consensus 521 r~GRA-R~g--~s~~vi-lv~~~~ 540 (1601)
+.||| |-+ ..|.|+ |++.+.
T Consensus 531 M~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 531 MLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HhcccCCCCcccCceEEEEecCCh
Confidence 99997 754 445665 666553
|
|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-25 Score=225.77 Aligned_cols=125 Identities=38% Similarity=0.595 Sum_probs=102.0
Q ss_pred CHHHHHHhhcCCCCCCC-CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHh
Q 000380 1225 HRGLLLQAFVHPSFNRL-GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303 (1601)
Q Consensus 1225 ~~~ll~~Alth~s~~~~-~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~ 1303 (1601)
|+.||.+||||+||.+. .++|||||||||+||+++|++|||+++|. ++|.++.+|+.+|++++|+.+|.++||+++++
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 68899999999999754 78999999999999999999999999554 89999999999999999999999999999998
Q ss_pred hcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhh
Q 000380 1304 FDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP 1371 (1601)
Q Consensus 1304 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~ 1371 (1601)
...+.. .......+|+++|+|||+|||||+|+|++ .+.+|+.+++-|
T Consensus 80 ~~~~~~-------------------~~~~~~~~~vlad~feAliGAiyld~G~~--~a~~~i~~~i~~ 126 (128)
T PF14622_consen 80 WGPGEE-------------------KSGGSGSDKVLADVFEALIGAIYLDSGFE--AARKFIQKLILP 126 (128)
T ss_dssp --HHHH-------------------HTTGGG-HHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHH--
T ss_pred hCccHh-------------------hcCCCCCccHHHhHHHHHHHHHHHHcCHH--HHHHHHHHHhcc
Confidence 632110 11223458999999999999999999987 999999887755
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=253.28 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|...+.+.+.+. ...+.++||||+++..++.++..|...+.. ...+|+ ++.++++..+..+|+.|
T Consensus 407 ~~K~~ai~~~i~~~-~~~~~pvLIft~s~~~se~ls~~L~~~gi~-------~~~L~a---~~~~~E~~ii~~ag~~g-- 473 (762)
T TIGR03714 407 PEKLMATLEDVKEY-HETGQPVLLITGSVEMSEIYSELLLREGIP-------HNLLNA---QNAAKEAQIIAEAGQKG-- 473 (762)
T ss_pred HHHHHHHHHHHHHH-hhCCCCEEEEECcHHHHHHHHHHHHHCCCC-------EEEecC---CChHHHHHHHHHcCCCC--
Confidence 56888888888764 245779999999999999999999986542 233565 47777777777777666
Q ss_pred cEEEEecccccCccCC---------CccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEEeC
Q 000380 486 NLLVATKVGEEGLDIQ---------TCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDS 538 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip---------~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~~ 538 (1601)
.|+|||+++++|+||+ ++++||+|+.|..... +||+||+ |.|..|.++++..
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEc
Confidence 7999999999999999 9999999999998766 9999995 9999999885543
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=253.94 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|...|.+.+... ...+.++||||+++..++.|+..|...+.. ...+|+ ++.++++..+..+++.|
T Consensus 411 ~~K~~al~~~i~~~-~~~~~pvLIf~~t~~~se~l~~~L~~~gi~-------~~~L~~---~~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 411 DEKYKAVIEEVKER-HETGRPVLIGTGSIEQSETFSKLLDEAGIP-------HNLLNA---KNAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-------EEEecC---CccHHHHHHHHHcCCCC--
Confidence 56888888888653 235779999999999999999999986542 334566 46777777777777766
Q ss_pred cEEEEecccccCccC---CCcc-----EEEEcCCCCCHHHHHHHhhc-CCCCCCeEEEEEe
Q 000380 486 NLLVATKVGEEGLDI---QTCC-----LVIRFDLPETVASFIQSRGR-ARMPQSEYAFLVD 537 (1601)
Q Consensus 486 ~vLVaT~vleeGIDi---p~~~-----~VI~fd~p~s~~~yiQr~GR-AR~g~s~~vilv~ 537 (1601)
+|+|||+++++|+|| |++. +||+||.|.|.+.|+||+|| ||.|+.|.++++-
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 799999999999999 6998 99999999999999999999 5999999888543
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=220.18 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=123.3
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---c-CCc
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---I-GFK 132 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~-~l~ 132 (1601)
.|.+.|.+.++.++- -+++..+..|.|||-++++.. ++++.-.+..-.+|++|.|++|+-|..++..++ + +++
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~t--lqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vk 141 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT--LQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 141 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhh--hhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCce
Confidence 477899999987766 899999999999998888776 444443344457899999999999988777665 3 589
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~ 212 (1601)
+.+++|+.....+.+.+++ .++|+|+||++++.+.+.+.++++++...|+|||+.+++ .-.+++-+++..+..+
T Consensus 142 vaVFfGG~~Ikkdee~lk~---~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle--~lDMrRDvQEifr~tp- 215 (387)
T KOG0329|consen 142 VSVFFGGLFIKKDEELLKN---CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE--QLDMRRDVQEIFRMTP- 215 (387)
T ss_pred EEEEEcceeccccHHHHhC---CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH--HHHHHHHHHHHhhcCc-
Confidence 9999999998777777665 689999999999999999999999999999999999973 3345555555544222
Q ss_pred CCCEEEEEeccc
Q 000380 213 KVPRIFGMTASP 224 (1601)
Q Consensus 213 ~~p~ilgLTATP 224 (1601)
.-.++..+|||.
T Consensus 216 ~~KQvmmfsatl 227 (387)
T KOG0329|consen 216 HEKQVMMFSATL 227 (387)
T ss_pred ccceeeeeeeec
Confidence 123444555553
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=231.15 Aligned_cols=132 Identities=36% Similarity=0.493 Sum_probs=112.7
Q ss_pred HHHHHhcCCCCCCccCCHHHHHHHhCcccccCC----CCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhc
Q 000380 1004 ELKHLLSASFPEGAEVSAEMLLKALTTEKCQER----FSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVN 1079 (1601)
Q Consensus 1004 ~l~~~l~~~~~~~~~~~~~lll~AlT~~~~~~~----~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1079 (1601)
.+...+++.|. +++++.+||||+|+... .|||||||||||||.++++.+||.+||+.+||.||.+|+.+||
T Consensus 10 ~l~~~lg~~f~-----~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~ 84 (235)
T COG0571 10 ALEKKLGYTFK-----DKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVS 84 (235)
T ss_pred HHHHHhCCCcC-----CHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45667777764 58999999999998754 4899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHH
Q 000380 1080 NSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159 (1601)
Q Consensus 1080 N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~ 1159 (1601)
+..|+.+|..+||..||+ .|.+ +. .++ ..-.++.+||+|
T Consensus 85 ~~~La~ia~~l~l~~~l~-----------lg~g-------e~-------~~g----------------g~~~~silaD~~ 123 (235)
T COG0571 85 EESLAEIARELGLGDYLR-----------LGKG-------EE-------KSG----------------GRRRESILADAF 123 (235)
T ss_pred HHHHHHHHHHhCccchhh-----------ccCC-------hh-------hcC----------------CCCchhHHHHHH
Confidence 999999999999999998 3332 00 001 112589999999
Q ss_pred HHHhhccccccChHHHHHHHHH
Q 000380 1160 EALVGAFIDDSGFKAATAFLKW 1181 (1601)
Q Consensus 1160 EAliGA~~~~~g~~~a~~~~~~ 1181 (1601)
||+|||+|+|+|++.+.+|+..
T Consensus 124 EAligAiylD~g~~~~~~~i~~ 145 (235)
T COG0571 124 EALIGAIYLDSGLEAARKFILK 145 (235)
T ss_pred HHHHHHHHHhCChHHHHHHHHH
Confidence 9999999999999999998753
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=235.26 Aligned_cols=133 Identities=32% Similarity=0.348 Sum_probs=113.0
Q ss_pred HHHHHhcCCCCCCccCCHHHHHHHhCcccccC--CCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccH
Q 000380 1004 ELKHLLSASFPEGAEVSAEMLLKALTTEKCQE--RFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNS 1081 (1601)
Q Consensus 1004 ~l~~~l~~~~~~~~~~~~~lll~AlT~~~~~~--~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~ 1081 (1601)
+|...|++.|. ++.++.+||||+|+.. ..||||||||||+||+++++.+||.+||+.+||+||.+|+.+|||.
T Consensus 14 ~le~~lgy~F~-----~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 14 ILEERTGHRFA-----NKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHCCCCC-----CHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 46777888874 5899999999999865 4599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHH
Q 000380 1082 NLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEA 1161 (1601)
Q Consensus 1082 ~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EA 1161 (1601)
+|+.+|.++||++||+.. ... .. .......|++||+|||
T Consensus 89 ~La~ia~~lgL~~~i~~~-----------~~~---------------~~---------------~~~~~~~~ilad~~EA 127 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTG-----------SDV---------------KK---------------LTGKRLLNVRADVVEA 127 (235)
T ss_pred HHHHHHHHCCcHHHhccC-----------cch---------------hh---------------cCCcccchHHHHHHHH
Confidence 999999999999999822 110 00 0001136899999999
Q ss_pred HhhccccccChHHHHHHHHHh
Q 000380 1162 LVGAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1162 liGA~~~~~g~~~a~~~~~~l 1182 (1601)
||||+|+|+|++.|.+|+..+
T Consensus 128 liGAiylD~G~~~a~~~i~~~ 148 (235)
T PRK12371 128 LIAAIYLDGGLEAARPFIQRY 148 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999998643
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=265.36 Aligned_cols=312 Identities=17% Similarity=0.230 Sum_probs=219.7
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFC 137 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~ 137 (1601)
.|+-|.+++...+. +++.|.+|||.||+++|.+|+.- .++.+|||.|.++|++.|...+ ...+++...+.
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------~~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~ 335 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------LGGVTVVISPLISLMQDQVTHL-SKKGIPACFLS 335 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------cCCceEEeccHHHHHHHHHHhh-hhcCcceeecc
Confidence 78999999998888 99999999999999999999732 1458999999999999999988 44589999999
Q ss_pred CCCCcCCchhhHHhhhcc---CeEEEEcHHHHHHH--HhccccCccc---eeEEEEecCccccccCCC---hHHHHHHHH
Q 000380 138 GGSKRLKSHCDWEKEIDQ---YEVLVMIPQILLYC--LYHRFIKMEL---IALLIFDECHHAQVKSNH---PYAKIMKDF 206 (1601)
Q Consensus 138 G~~~~~~~~~~~~~~~~~---~~VlV~Tp~~l~~~--l~~~~~~l~~---i~llI~DEaH~~~~~~~~---~~~~i~~~~ 206 (1601)
|+.....+...|+....+ .+|+..||+.+... +.+....+.. +.++||||||+...|+.. .|..+-...
T Consensus 336 s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~ 415 (941)
T KOG0351|consen 336 SIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLR 415 (941)
T ss_pred ccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHH
Confidence 998877777777765544 58999999988742 2222333444 899999999999988733 144322221
Q ss_pred cCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhh
Q 000380 207 YKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 286 (1601)
.+. +.-.+|+||||.... +...+-..-.+-++.+... -..+|.....
T Consensus 416 ~~~---~~vP~iALTATAT~~--------v~~DIi~~L~l~~~~~~~~--------sfnR~NL~ye-------------- 462 (941)
T KOG0351|consen 416 IRF---PGVPFIALTATATER--------VREDVIRSLGLRNPELFKS--------SFNRPNLKYE-------------- 462 (941)
T ss_pred hhC---CCCCeEEeehhccHH--------HHHHHHHHhCCCCcceecc--------cCCCCCceEE--------------
Confidence 111 113589999996221 1111111000101110000 0000000000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCC
Q 000380 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTI 366 (1601)
Q Consensus 287 ~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 366 (1601)
T Consensus 463 -------------------------------------------------------------------------------- 462 (941)
T KOG0351|consen 463 -------------------------------------------------------------------------------- 462 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHh
Q 000380 367 DDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQN 446 (1601)
Q Consensus 367 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~ 446 (1601)
...... ......+...++.+ ..+..+||+|.+|.+++.++..|..
T Consensus 463 --------------------------------V~~k~~-~~~~~~~~~~~~~~--~~~~s~IIYC~sr~~ce~vs~~L~~ 507 (941)
T KOG0351|consen 463 --------------------------------VSPKTD-KDALLDILEESKLR--HPDQSGIIYCLSRKECEQVSAVLRS 507 (941)
T ss_pred --------------------------------EEeccC-ccchHHHHHHhhhc--CCCCCeEEEeCCcchHHHHHHHHHH
Confidence 000000 00000111111222 3567899999999999999999998
Q ss_pred cccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-
Q 000380 447 LKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA- 525 (1601)
Q Consensus 447 ~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA- 525 (1601)
.+.. ..++|+| |+.++|..+.++|-.++++|+|||=++++|||.|+|..||||.+|.+.+.|.|-.|||
T Consensus 508 ~~~~-------a~~YHAG---l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAG 577 (941)
T KOG0351|consen 508 LGKS-------AAFYHAG---LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAG 577 (941)
T ss_pred hchh-------hHhhhcC---CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccC
Confidence 7632 4467876 9999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCeEEEEEe
Q 000380 526 RMPQSEYAFLVD 537 (1601)
Q Consensus 526 R~g~s~~vilv~ 537 (1601)
|.|....++|+-
T Consensus 578 RDG~~s~C~l~y 589 (941)
T KOG0351|consen 578 RDGLPSSCVLLY 589 (941)
T ss_pred cCCCcceeEEec
Confidence 999999998664
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=250.86 Aligned_cols=403 Identities=16% Similarity=0.120 Sum_probs=220.4
Q ss_pred hhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCcEEE
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFKVRT 135 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~v~~ 135 (1601)
|++-|......+ .++.|+.++||+|||++|.+++. ...+ .++.+.|++||..||.|.++.+..+ +|++++.
T Consensus 57 p~~vQlig~~~l-~~G~Iaem~TGeGKTLva~lpa~--l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 57 PFDVQLIGGIAL-HKGKIAEMKTGEGKTLTATLPAY--LNAL---TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred ccchHHhhhhhh-cCCceeeecCCCccHHHHHHHHH--HHHH---hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 444454444432 35669999999999999999983 2222 2456999999999999988877764 5799999
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHH-HHHHhccc------cCccceeEEEEecCcccccc-CCChHHHHHHHHc
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQIL-LYCLYHRF------IKMELIALLIFDECHHAQVK-SNHPYAKIMKDFY 207 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l-~~~l~~~~------~~l~~i~llI~DEaH~~~~~-~~~~~~~i~~~~~ 207 (1601)
++|+.+...++. ...++|+++||..| .+.+.... +.+..++++|+||+|.++.+ ...|. +++.
T Consensus 131 i~g~~~~~~r~~-----~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL--iisg-- 201 (745)
T TIGR00963 131 ILSGMSPEERRE-----AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL--IISG-- 201 (745)
T ss_pred EeCCCCHHHHHH-----hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHH--hhcC--
Confidence 999877432221 12489999999999 78777662 45788999999999999641 11110 1110
Q ss_pred CCCCCCCCEEEEEeccccCCCCC---ccc-------c-chHHHHHHHHHhccCe-EEeecCHH-------HHhc---c--
Q 000380 208 KPDIMKVPRIFGMTASPVVGKGA---SAQ-------A-NLPKSINSLENLLDAK-VYSVEDAE-------DLES---F-- 263 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP~~~~~~---~~~-------~-~l~~~i~~Le~~l~~~-~~~~~~~~-------~l~~---~-- 263 (1601)
+...+..+.++|||+...-. .+. . --++.+..+|..++.. .+...+.. .+.. |
T Consensus 202 ---~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 202 ---PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred ---CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 01112234445554432110 000 0 0123455556555321 11111100 0000 1
Q ss_pred -----cCCCeEEEEEecCCCC-CCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhh--HHHHHHHHhhhHHHHHHhh
Q 000380 264 -----VSSPVVRVYQYGPVIN-DTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRN--TTKQLNRLHDSMKFCLENL 335 (1601)
Q Consensus 264 -----~~~p~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~l 335 (1601)
+.+..+.++....... +-....+.+.+.++- +..+. +. ....++.. ...+++.+. +-.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEa-KE~v~---i~---~e~~t~a~It~qn~Fr~Y~-------kl~ 344 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEA-KEGVE---IQ---NENQTLATITYQNFFRLYE-------KLS 344 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHH-hcCCC---cC---CCceeeeeeeHHHHHhhCc-------hhh
Confidence 1122222332211100 000111223333221 11000 00 00000000 000111000 001
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH---hc--CCCCCccchhhhccCCCCCHHHH
Q 000380 336 GVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAIC---RR--DGIASDLSCIEVLKEPFFSKKLL 410 (1601)
Q Consensus 336 g~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~--~~~~~~~~~~~~l~~~~~s~K~~ 410 (1601)
|..+ ... .... +...++.-.. +. .....+.+..- + .....|..
T Consensus 345 GmTG------------------------Ta~--te~~---E~~~iY~l~vv~IPtnkp~~R~d~~d~i-~--~t~~~k~~ 392 (745)
T TIGR00963 345 GMTG------------------------TAK--TEEE---EFEKIYNLEVVVVPTNRPVIRKDLSDLV-Y--KTEEEKWK 392 (745)
T ss_pred ccCC------------------------CcH--HHHH---HHHHHhCCCEEEeCCCCCeeeeeCCCeE-E--cCHHHHHH
Confidence 1111 000 0000 0001110000 00 00000100000 0 01145777
Q ss_pred HHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEE
Q 000380 411 RLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVA 490 (1601)
Q Consensus 411 ~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVa 490 (1601)
.+.+.+.+. ...+.++||||+++..++.+++.|...+.. ...+|+ .+.+|+..+..|+.+...|+||
T Consensus 393 ai~~~i~~~-~~~grpvLV~t~si~~se~ls~~L~~~gi~-------~~~Lna-----~q~~rEa~ii~~ag~~g~VtIA 459 (745)
T TIGR00963 393 AVVDEIKER-HAKGQPVLVGTTSVEKSELLSNLLKERGIP-------HNVLNA-----KNHEREAEIIAQAGRKGAVTIA 459 (745)
T ss_pred HHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-------eEEeeC-----ChHHHHHHHHHhcCCCceEEEE
Confidence 777766544 346889999999999999999999986542 223444 2678899999999999999999
Q ss_pred ecccccCccCCC-------ccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEEeC
Q 000380 491 TKVGEEGLDIQT-------CCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDS 538 (1601)
Q Consensus 491 T~vleeGIDip~-------~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~~ 538 (1601)
|+++++|+||+. ..+||+++.|.|.+.|.|++||+ |.|+.|.+.++-.
T Consensus 460 TnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 460 TNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred eccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 999999999999 55999999999999999999995 9999998875443
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=241.69 Aligned_cols=132 Identities=36% Similarity=0.507 Sum_probs=113.2
Q ss_pred HHHHHhcCCCCCCccCCHHHHHHHhCcccccCCCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHH
Q 000380 1004 ELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNL 1083 (1601)
Q Consensus 1004 ~l~~~l~~~~~~~~~~~~~lll~AlT~~~~~~~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L 1083 (1601)
+|...|++.|. +..+|.+||||+|+... ||||||||||+||+++++.+||.+||+.+||+||.+|+.+|||.+|
T Consensus 5 ~LEkrLGY~Fk-----n~~LL~eALTH~Sys~e-~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 5 QLESRLRYEFR-----NAELLRQALTHRSHSAT-HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHhCCCcC-----CHHHHHHHHhccCcCcc-cHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 46778888874 58999999999998654 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHh
Q 000380 1084 LKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALV 1163 (1601)
Q Consensus 1084 ~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAli 1163 (1601)
+.+|+++||.+||+. |.. + . . .....+++++||+|||||
T Consensus 79 A~IAr~LGL~d~Lrl-----------g~g-------E----~---~----------------sgG~~~~sILADvFEALI 117 (467)
T PRK14718 79 YEIAQALNISDGLRL-----------GEG-------E----L---R----------------SGGFRRPSILADAFEAII 117 (467)
T ss_pred HHHHHHcCchHHHhh-----------CCc-------c----c---c----------------cCCCCChhHHHHHHHHHH
Confidence 999999999999982 111 0 0 0 001136899999999999
Q ss_pred hccccccChHHHHHHHHHh
Q 000380 1164 GAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1164 GA~~~~~g~~~a~~~~~~l 1182 (1601)
||+|+|+|++.+..|+..+
T Consensus 118 GAIYLDsG~e~a~~fI~~l 136 (467)
T PRK14718 118 GAVFLDGGFEAAQGVIKRL 136 (467)
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999988643
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-23 Score=227.18 Aligned_cols=332 Identities=19% Similarity=0.250 Sum_probs=208.6
Q ss_pred HHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeC
Q 000380 61 KYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCG 138 (1601)
Q Consensus 61 ~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G 138 (1601)
+.|..++..+.+ +|+.|+||||+||+++|.+|.+ .+ +..++|+.|..+|+.+|.+.+.++ .+++..+.+
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL--~~------~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL--VH------GGITIVISPLIALIKDQIDHLKRL-KVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH--Hh------CCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcc
Confidence 689999999988 8999999999999999999973 22 448999999999999999988764 555655655
Q ss_pred CCCcCCchhhH---HhhhccCeEEEEcHHHHHHH----HhccccCccceeEEEEecCccccccCCCh---HHHHHHHHcC
Q 000380 139 GSKRLKSHCDW---EKEIDQYEVLVMIPQILLYC----LYHRFIKMELIALLIFDECHHAQVKSNHP---YAKIMKDFYK 208 (1601)
Q Consensus 139 ~~~~~~~~~~~---~~~~~~~~VlV~Tp~~l~~~----l~~~~~~l~~i~llI~DEaH~~~~~~~~~---~~~i~~~~~~ 208 (1601)
..+..++.+.. .+.-.+..++..||+..... +.++..+-.-+.++|+||||+...||... |..+-..- .
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR-S 172 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR-S 172 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH-h
Confidence 55544443332 22223457999999876431 12233344568999999999999887431 33222211 1
Q ss_pred CCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhH
Q 000380 209 PDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 288 (1601)
. .... .-++||||.... +.+.+-. -| ...+|.-
T Consensus 173 ~-~~~v-pwvALTATA~~~--------VqEDi~~---qL---------------~L~~PVA------------------- 205 (641)
T KOG0352|consen 173 V-CPGV-PWVALTATANAK--------VQEDIAF---QL---------------KLRNPVA------------------- 205 (641)
T ss_pred h-CCCC-ceEEeecccChh--------HHHHHHH---HH---------------hhcCcHH-------------------
Confidence 1 1122 357788886221 1111100 00 0011100
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCch
Q 000380 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDD 368 (1601)
Q Consensus 289 ~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 368 (1601)
.++..++ + .++.| | .
T Consensus 206 -----iFkTP~F--------------R----------~NLFY--------------------D----------------~ 220 (641)
T KOG0352|consen 206 -----IFKTPTF--------------R----------DNLFY--------------------D----------------N 220 (641)
T ss_pred -----hccCcch--------------h----------hhhhH--------------------H----------------H
Confidence 0000000 0 00000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcc
Q 000380 369 SLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK 448 (1601)
Q Consensus 369 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~ 448 (1601)
.+..++..-...+...+.. .+. |-.. .++-...-.+++||||.+|+.++.++-.|...|
T Consensus 221 ~~K~~I~D~~~~LaDF~~~-----------~LG------~~~~----~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G 279 (641)
T KOG0352|consen 221 HMKSFITDCLTVLADFSSS-----------NLG------KHEK----ASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG 279 (641)
T ss_pred HHHHHhhhHhHhHHHHHHH-----------hcC------Chhh----hhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC
Confidence 0001110000011110000 000 0000 000001224689999999999999999998876
Q ss_pred cccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CC
Q 000380 449 FLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527 (1601)
Q Consensus 449 ~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~ 527 (1601)
+. .+.+|.| +...+|.++.+++-+|++.|++||...++|+|-|++..|||+|+|.|+..|.|-.||| |.
T Consensus 280 i~-------A~AYHAG---LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRD 349 (641)
T KOG0352|consen 280 IP-------AMAYHAG---LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRD 349 (641)
T ss_pred cc-------hHHHhcc---cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccC
Confidence 53 4567876 8889999999999999999999999999999999999999999999999999999997 99
Q ss_pred CCCeEEEEE-eCCCHhHHH
Q 000380 528 PQSEYAFLV-DSGNQRELD 545 (1601)
Q Consensus 528 g~s~~vilv-~~~~~~~~~ 545 (1601)
|...++-++ .+.+.....
T Consensus 350 Gk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 350 GKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred CCccceeeeecccchHHHH
Confidence 999999754 555554443
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=240.33 Aligned_cols=132 Identities=35% Similarity=0.491 Sum_probs=113.2
Q ss_pred HHHHHhcCCCCCCccCCHHHHHHHhCcccccCCCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHH
Q 000380 1004 ELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNL 1083 (1601)
Q Consensus 1004 ~l~~~l~~~~~~~~~~~~~lll~AlT~~~~~~~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L 1083 (1601)
+|...|++.|. +..+|.+||||+|+... ||||||||||+||+++++.+||.+||+++||+||.+|+.+|||.+|
T Consensus 5 ~LEk~LGY~Fk-----n~~LL~eALTH~Sy~~~-~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 5 QLESRLRYEFR-----NAELLRQALTHRSHSAT-HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHhCCCcC-----CHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 46778888874 58999999999998654 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHh
Q 000380 1084 LKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALV 1163 (1601)
Q Consensus 1084 ~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAli 1163 (1601)
+.+|.++||.+||+.. .. + . . ......+|++||+|||||
T Consensus 79 A~IA~~LgL~~~Lrlg-----------~g-------e----~---~----------------sgg~~~~kILADvfEALI 117 (413)
T PRK12372 79 YEIAQALNISEGLRLG-----------EG-------E----L---R----------------SGGFRRPSILADAFEAII 117 (413)
T ss_pred HHHHHHcCchHhhhcC-----------cc-------h----h---h----------------cCCCCCccHHHHHHHHHH
Confidence 9999999999999821 11 0 0 0 001126899999999999
Q ss_pred hccccccChHHHHHHHHHh
Q 000380 1164 GAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1164 GA~~~~~g~~~a~~~~~~l 1182 (1601)
||+|+|+|++.+..|+..+
T Consensus 118 GAIYLDsG~e~a~~fV~~l 136 (413)
T PRK12372 118 GAVFLDGGFEAAQGVIKRL 136 (413)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 9999999999999998754
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=265.82 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=98.6
Q ss_pred hhhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GF 131 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~l 131 (1601)
...|+++|..++..++. +|+++.+|||+|||..+ +++.. .+.. .+++++||+||++|+.|+++.++.+. ++
T Consensus 76 g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~--~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i 150 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSL--FLAK--KGKRCYIILPTTLLVIQVAEKISSLAEKAGV 150 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHH--HHHh--cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCC
Confidence 34699999999999999 89999999999999744 44422 1211 35789999999999999999998865 44
Q ss_pred cE---EEEeCCCCcCCchhhHHhhhc-cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccc
Q 000380 132 KV---RTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193 (1601)
Q Consensus 132 ~v---~~~~G~~~~~~~~~~~~~~~~-~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~ 193 (1601)
.+ ..++|+.+...+...|..... +++|+|+||+.|.+.+..- .. +++++|+||||++++
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhh
Confidence 43 357788765444444544333 4899999999998776542 22 899999999999975
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=195.32 Aligned_cols=87 Identities=46% Similarity=0.757 Sum_probs=66.1
Q ss_pred hHHHHHHHhccCCCCCCCCCcceEEEEeCCCcEEEEEEcCCCCccceeecCCCCCHHHHHHHHHHHHHHHHHHcCcCCcC
Q 000380 592 GVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDY 671 (1601)
Q Consensus 592 ai~~l~~yc~~lp~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~pl~~~~g~~~~s~~~Ak~~aa~~a~~~L~~~g~l~~~ 671 (1601)
|+++|++||++||+|.|+.+.|+|.+....++|+|+|+||.++|++.+.|.+|+||+.|||+|||+||++||++|+||||
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~ 80 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDH 80 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTT
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 78999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 000380 672 LLPQEDN 678 (1601)
Q Consensus 672 l~p~~~~ 678 (1601)
|+|..++
T Consensus 81 L~P~~~~ 87 (90)
T PF03368_consen 81 LLPISKE 87 (90)
T ss_dssp S--HHHH
T ss_pred cCCCCCC
Confidence 9998654
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-23 Score=210.07 Aligned_cols=127 Identities=39% Similarity=0.652 Sum_probs=111.9
Q ss_pred HHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHhhcC
Q 000380 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDS 1306 (1601)
Q Consensus 1227 ~ll~~Alth~s~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~~~ 1306 (1601)
.||.+|||||||.....+|||||||||+||+++++.|+|.++|+.+++.|+.+|+.+|||+.|+.+|.++|++++++.+.
T Consensus 1 ~ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~ 80 (129)
T smart00535 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGR 80 (129)
T ss_pred CHHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCc
Confidence 37999999999987445999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhhhhh
Q 000380 1307 NVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK 1374 (1601)
Q Consensus 1307 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~~~~ 1374 (1601)
.... ......+|+++|+|||+|||||+|+|.+ .+++|+..++.|.++
T Consensus 81 ~~~~-------------------~~~~~~~k~~a~~~eAliGAi~ld~g~~--~~~~~i~~~~~~~~~ 127 (129)
T smart00535 81 GEAI-------------------SGGRDKPSILADVFEALIGAIYLDSGLE--AAREFIRDLLGPRLE 127 (129)
T ss_pred hHhh-------------------cCCcccchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhc
Confidence 3310 1123569999999999999999999965 999999999988654
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=244.45 Aligned_cols=304 Identities=19% Similarity=0.271 Sum_probs=212.3
Q ss_pred hhhhHHHHHHHHHHhc-------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 57 QIARKYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
+...+-|..+++.+++ -|=+||++.|-|||-+|+-++ +... ..+|.|.|||||.-|++|+++.|++.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAA--FkAV---~~GKQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAA--FKAV---MDGKQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHH--HHHh---cCCCeEEEEcccHHhHHHHHHHHHHHh
Confidence 3456889999999887 367999999999999998776 2221 357899999999999999999998754
Q ss_pred ---CCcEEEEeCCCCcCCchhhHHhhhc-cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 130 ---GFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 130 ---~l~v~~~~G~~~~~~~~~~~~~~~~-~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
+++|..++.=.+....+......-. ..||||+|...| +..+.+.+++||||||-||.+.+ ....++.
T Consensus 668 ~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGVk----~KEkLK~ 738 (1139)
T COG1197 668 AGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGVK----HKEKLKE 738 (1139)
T ss_pred cCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCcc----HHHHHHH
Confidence 5777777665554444444444333 369999997644 45678999999999999999642 3455555
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCe--EEEEEecCCCCCCCc
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPV--VRVYQYGPVINDTSS 283 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~--~~~~~~~~~~~~~~~ 283 (1601)
+.. .-.+|.|||||+.+. +...+..+.. +.-....|. ..+-.|-...
T Consensus 739 Lr~-----~VDvLTLSATPIPRT-------L~Msm~GiRd--------------lSvI~TPP~~R~pV~T~V~~~----- 787 (1139)
T COG1197 739 LRA-----NVDVLTLSATPIPRT-------LNMSLSGIRD--------------LSVIATPPEDRLPVKTFVSEY----- 787 (1139)
T ss_pred Hhc-----cCcEEEeeCCCCcch-------HHHHHhcchh--------------hhhccCCCCCCcceEEEEecC-----
Confidence 532 356999999997653 2222221111 100001110 0000000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhc
Q 000380 284 SYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEG 363 (1601)
Q Consensus 284 ~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~ 363 (1601)
T Consensus 788 -------------------------------------------------------------------------------- 787 (1139)
T COG1197 788 -------------------------------------------------------------------------------- 787 (1139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHH-HHhhcccCCCceEEEEecchhhHHHHHH
Q 000380 364 NTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIG-ILSTFRLQQHMKCIVFVNRIVTARALSY 442 (1601)
Q Consensus 364 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~-lL~~~~~~~~~k~IIFv~~r~~a~~L~~ 442 (1601)
++. .+.+ ++++. ..++++-.-+|++...+.++.
T Consensus 788 ------------------------------------------d~~--~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~ 821 (1139)
T COG1197 788 ------------------------------------------DDL--LIREAILREL--LRGGQVFYVHNRVESIEKKAE 821 (1139)
T ss_pred ------------------------------------------ChH--HHHHHHHHHH--hcCCEEEEEecchhhHHHHHH
Confidence 000 0000 11111 246788888899999999999
Q ss_pred HHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCC-CCHHHHHHH
Q 000380 443 ILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP-ETVASFIQS 521 (1601)
Q Consensus 443 ~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p-~s~~~yiQr 521 (1601)
.|+++ -|..-+++.|| +|+..+-++++..|-+|+.+|||||.+.|.|||||++|.+|.-+.. .-..+..|-
T Consensus 822 ~L~~L------VPEarI~vaHG--QM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQL 893 (1139)
T COG1197 822 RLREL------VPEARIAVAHG--QMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQL 893 (1139)
T ss_pred HHHHh------CCceEEEEeec--CCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHh
Confidence 99886 23334555455 7999999999999999999999999999999999999999855443 246899999
Q ss_pred hhc-CCCCCCeEEEEEeCC
Q 000380 522 RGR-ARMPQSEYAFLVDSG 539 (1601)
Q Consensus 522 ~GR-AR~g~s~~vilv~~~ 539 (1601)
+|| +|....+|++|+.+.
T Consensus 894 RGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 894 RGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred ccccCCccceEEEEEeecC
Confidence 999 699999999976554
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=242.74 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|...|.+.+.... ..+.++||||+++..++.++..|...+.. ...+|+. + .+|+..+..|+.+..
T Consensus 456 ~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~se~L~~~L~~~gi~-------~~~Lhg~---~--~~rE~~ii~~ag~~g 522 (656)
T PRK12898 456 AAKWAAVAARVRELH-AQGRPVLVGTRSVAASERLSALLREAGLP-------HQVLNAK---Q--DAEEAAIVARAGQRG 522 (656)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-------EEEeeCC---c--HHHHHHHHHHcCCCC
Confidence 568888988887642 23567999999999999999999986542 3345653 3 355566666777777
Q ss_pred cEEEEecccccCccCC---Ccc-----EEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEEe
Q 000380 486 NLLVATKVGEEGLDIQ---TCC-----LVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVD 537 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip---~~~-----~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~ 537 (1601)
.|+|||+++++|+||+ ++. +||+||.|.|.+.|+||+||+ |.|+.|.++++-
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~i 583 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAIL 583 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEe
Confidence 8999999999999999 666 999999999999999999995 999999998554
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=250.61 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCC
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQT 502 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~ 502 (1601)
....+|||++++..++.+++.|...+. +...+..+|+ +++.++|..+++. .|..+|||||+++|+|||||+
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~----~~~~VlpLhg---~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpg 355 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNL----RHTEILPLYA---RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPG 355 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCC----CcceEeeccc---CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCc
Confidence 346899999999999999999987532 2233667787 4999999999886 478899999999999999999
Q ss_pred ccEEEEcCC---------------C---CCHHHHHHHhhcC-CCCCCeEEE-EEe
Q 000380 503 CCLVIRFDL---------------P---ETVASFIQSRGRA-RMPQSEYAF-LVD 537 (1601)
Q Consensus 503 ~~~VI~fd~---------------p---~s~~~yiQr~GRA-R~g~s~~vi-lv~ 537 (1601)
+++||+++. | .|..+|.||+||| |. +.|.|+ +++
T Consensus 356 I~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyt 409 (1294)
T PRK11131 356 IKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYS 409 (1294)
T ss_pred ceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCC
Confidence 999999863 3 4558999999996 77 678887 665
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=207.45 Aligned_cols=128 Identities=41% Similarity=0.684 Sum_probs=113.9
Q ss_pred HHHHHhhcCCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHhh
Q 000380 1227 GLLLQAFVHPSFNRL--GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIF 1304 (1601)
Q Consensus 1227 ~ll~~Alth~s~~~~--~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~ 1304 (1601)
.||.+||||+|+... ..+|||||||||+||+++++.|++.++|+.++|.++.+|+.+|||++|+.+|.++|++++++.
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 379999999999975 379999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhhhhhhhc
Q 000380 1305 DSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF 1375 (1601)
Q Consensus 1305 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~~~~~~~ 1375 (1601)
.+.... ......+|+++|+|||+|||||+|+|.+ .+++|+..++.|.+..
T Consensus 81 ~~~~~~-------------------~~~~~~~k~~ad~~eAliGAiyld~g~~--~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEEK-------------------SGGRLRPKILADVFEALIGAIYLDGGFE--AARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHhh-------------------cCCcccccHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHhh
Confidence 654321 0234569999999999999999999984 9999999998887653
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=229.81 Aligned_cols=429 Identities=20% Similarity=0.165 Sum_probs=239.6
Q ss_pred hhhhhHHHHHHHHHHhc-----------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCC-----cEEEEEeCChhHHH
Q 000380 56 KQIARKYQLELCKKAME-----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQK-----SICIFLAPTVALVQ 119 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~-----~~vl~LvPt~~Lv~ 119 (1601)
..++||||.|.++.+.+ ..+|++..+|+|||+..+.+|+.+.+ ..+. .+.|||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLr---q~P~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLR---QFPQAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHH---hCcCccccccccEEEccH-HHHH
Confidence 34699999999987765 24799999999999999999876543 3344 679999995 8999
Q ss_pred HHHHHHHHHcC---CcEEEEeCCCCc-CCchhhHHhhh---ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 120 QQAKVIEESIG---FKVRTFCGGSKR-LKSHCDWEKEI---DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 120 Q~~~~l~~~~~---l~v~~~~G~~~~-~~~~~~~~~~~---~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
.|.++|.++.+ +....++|..+. ++....|.... -...|++.+++.+.+... .+....+++||+||.|+..
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCcc
Confidence 99999999976 455666666654 22223332211 124688999998875444 3456789999999999995
Q ss_pred ccCCChHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeE-EeecCHHHHhcccCCCeEEE
Q 000380 193 VKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKV-YSVEDAEDLESFVSSPVVRV 271 (1601)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~-~~~~~~~~l~~~~~~p~~~~ 271 (1601)
+.....+..+++ . +.+|.+.||+||.++ ++.+.-++++-.. .-.....+.......|..+.
T Consensus 390 N~~s~~~kaL~~-l------~t~rRVLLSGTp~QN-----------dl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~ 451 (776)
T KOG0390|consen 390 NSDSLTLKALSS-L------KTPRRVLLTGTPIQN-----------DLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRG 451 (776)
T ss_pred chhhHHHHHHHh-c------CCCceEEeeCCcccc-----------cHHHHHHHHhhcChhhccchHHHHHHhhcccccc
Confidence 322222333332 2 568999999999655 4556666665321 11111222222222222221
Q ss_pred EEecCCCCCCCchhhhHHHHHHHHHHHHHHH----Hhhhhcccchh-------hhhHHHHHHHHhhhHHHHHHhhhhhHH
Q 000380 272 YQYGPVINDTSSSYVTCSEQLAEIKREQYIS----ALSRKLHDHQS-------LRNTTKQLNRLHDSMKFCLENLGVCGA 340 (1601)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~----~l~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~lg~~~~ 340 (1601)
..-.....+... +.=.+.|.++...++.. .+.+.+..... .....+.++.+.... ......|. +
T Consensus 452 ~~~~~s~e~~~~--~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~~--~ 526 (776)
T KOG0390|consen 452 RDADASEEDRER--EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKGY--A 526 (776)
T ss_pred cCCCcchhhhhh--HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhcc--h
Confidence 111111111000 11133344444443311 11111111100 001111222222110 00000000 0
Q ss_pred HHHHHHHhcCchhHH-HHHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCC---Cccchhh----hccCCCCCHHHHHH
Q 000380 341 LHASYILLSGDETMR-NELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIA---SDLSCIE----VLKEPFFSKKLLRL 412 (1601)
Q Consensus 341 ~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~----~l~~~~~s~K~~~L 412 (1601)
..... .+. ..-. ..++... ..+.++... ..+.... ...+...+.|+..|
T Consensus 527 l~~~~-~L~--k~cnhP~L~~~~--------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L 583 (776)
T KOG0390|consen 527 LELIT-KLK--KLCNHPSLLLLC--------------------EKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVL 583 (776)
T ss_pred hhHHH-HHH--HHhcCHHhhccc--------------------ccccccccccChHhhhcccccccccccchhhhHHHHH
Confidence 00000 000 0000 0000000 000000000 0000000 01122347899999
Q ss_pred HHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC---ccEEE
Q 000380 413 IGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE---LNLLV 489 (1601)
Q Consensus 413 ~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~---~~vLV 489 (1601)
..+|...+.....++.+..+.+.+.+.+..+.+-.+. .++.++| +|+.++|+.+++.|.+-. .-+|.
T Consensus 584 ~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~-------~~~rLdG---~~~~~qRq~~vd~FN~p~~~~~vfLl 653 (776)
T KOG0390|consen 584 VFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGY-------EVLRLDG---KTSIKQRQKLVDTFNDPESPSFVFLL 653 (776)
T ss_pred HHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCc-------eEEEEcC---CCchHHHHHHHHhccCCCCCceEEEE
Confidence 9998554333334555555666666666666554322 2556666 699999999999998744 33677
Q ss_pred EecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhHHHH
Q 000380 490 ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRELDL 546 (1601)
Q Consensus 490 aT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~~~~ 546 (1601)
+|.++++||++-+++.||.||++|||..-.|.++|| |.||.+.|+ |+..+..++...
T Consensus 654 SsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~ 714 (776)
T KOG0390|consen 654 SSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIY 714 (776)
T ss_pred ecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHH
Confidence 889999999999999999999999999999999999 999998665 667777665443
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=230.49 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=107.0
Q ss_pred hhhhhHHHHHHHHHHhc-----------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHH
Q 000380 56 KQIARKYQLELCKKAME-----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV 124 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 124 (1601)
...+|.||.+++.++.. ++.+|+++||||||++++.++..+. +.....++|||||+..|+.|+.+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~---~~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL---ELLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH---hhcCCCeEEEEECcHHHHHHHHHH
Confidence 35599999999988754 2589999999999999988875543 233457899999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCcCCchhhHHhhhc--cCeEEEEcHHHHHHHHhcc--ccCccce-eEEEEecCccccccCCChH
Q 000380 125 IEESIGFKVRTFCGGSKRLKSHCDWEKEID--QYEVLVMIPQILLYCLYHR--FIKMELI-ALLIFDECHHAQVKSNHPY 199 (1601)
Q Consensus 125 l~~~~~l~v~~~~G~~~~~~~~~~~~~~~~--~~~VlV~Tp~~l~~~l~~~--~~~l~~i-~llI~DEaH~~~~~~~~~~ 199 (1601)
|..+..-.+. + ......+...+. ..+|+|+|.|.|.+.+... .+....- .+||+|||||.. ...|
T Consensus 313 f~~~~~~~~~---~----~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~---~~~~ 382 (667)
T TIGR00348 313 FQSLQKDCAE---R----IESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ---YGEL 382 (667)
T ss_pred HHhhCCCCCc---c----cCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc---chHH
Confidence 9987431110 0 011222333232 3689999999998644321 1111112 389999999983 3457
Q ss_pred HHHHHHHcCCCCCCCCEEEEEeccccCC
Q 000380 200 AKIMKDFYKPDIMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 200 ~~i~~~~~~~~~~~~p~ilgLTATP~~~ 227 (1601)
..+|+.++. ...+|||||||...
T Consensus 383 ~~~l~~~~p-----~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 383 AKNLKKALK-----NASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHhhCC-----CCcEEEEeCCCccc
Confidence 777765532 35799999999864
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=228.65 Aligned_cols=344 Identities=20% Similarity=0.255 Sum_probs=203.4
Q ss_pred CchhhhhHHHHHHHHHHhc------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 54 DPKQIARKYQLELCKKAME------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 54 ~~~~~~R~yQ~e~~~~~l~------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
.+...+|.||..++.+..+ +.++++|.||+|||.+|+.+|. ++++....|+||||+.+++|+.|.+..+.+
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~---rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID---RLIKSGWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH---HHHhcchhheeeEEechHHHHHHHHHHHHH
Confidence 3456799999999977765 4589999999999999998874 456667789999999999999999999999
Q ss_pred HcCC--cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc-----ccCccceeEEEEecCccccccCCChHH
Q 000380 128 SIGF--KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR-----FIKMELIALLIFDECHHAQVKSNHPYA 200 (1601)
Q Consensus 128 ~~~l--~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~-----~~~l~~i~llI~DEaH~~~~~~~~~~~ 200 (1601)
+.+. .+..+.+..... .++|.|+|+|.+...+.+. .+....++|||+||||+-. -..|.
T Consensus 238 ~~P~~~~~n~i~~~~~~~-----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---~~~~~ 303 (875)
T COG4096 238 FLPFGTKMNKIEDKKGDT-----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---YSEWS 303 (875)
T ss_pred hCCCccceeeeecccCCc-----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---HhhhH
Confidence 8753 333333333221 3789999999999877665 3445669999999999974 23466
Q ss_pred HHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhc-cCeEEeecCHHHHhc-ccCCCeE-EEEEecCC
Q 000380 201 KIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLL-DAKVYSVEDAEDLES-FVSSPVV-RVYQYGPV 277 (1601)
Q Consensus 201 ~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l-~~~~~~~~~~~~l~~-~~~~p~~-~~~~~~~~ 277 (1601)
.|+..|- -..+||||||........ -..+ +..++.-+..+.+.. |...+.. .+....+.
T Consensus 304 ~I~dYFd-------A~~~gLTATP~~~~d~~T-----------~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~ 365 (875)
T COG4096 304 SILDYFD-------AATQGLTATPKETIDRST-----------YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDL 365 (875)
T ss_pred HHHHHHH-------HHHHhhccCccccccccc-----------ccccCCCcceeecHHHHhhccccCCCCceEEeeeccc
Confidence 7888772 235677999965322210 0122 333333333333333 2222211 11111110
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHH
Q 000380 278 INDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNE 357 (1601)
Q Consensus 278 ~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~ 357 (1601)
..... ....+.. +.. .+.+ |- ....+
T Consensus 366 -~G~~~--~~~sere---k~~------g~~i-----------------------------~~---------dd~~~---- 391 (875)
T COG4096 366 -DGWKP--DAGSERE---KLQ------GEAI-----------------------------DE---------DDQNF---- 391 (875)
T ss_pred -cCcCc--Cccchhh---hhh------cccc-----------------------------Cc---------ccccc----
Confidence 00000 0000000 000 0000 00 00000
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHH-HHHHHHHhhc-ccCCCceEEEEecchh
Q 000380 358 LIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKL-LRLIGILSTF-RLQQHMKCIVFVNRIV 435 (1601)
Q Consensus 358 l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~-~~L~~lL~~~-~~~~~~k~IIFv~~r~ 435 (1601)
+....+..+. -+....-+ ..+-+.+..- ....-.|+||||.+..
T Consensus 392 ----~~~d~dr~~v------------------------------~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~d 437 (875)
T COG4096 392 ----EARDFDRTLV------------------------------IPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHD 437 (875)
T ss_pred ----cccccchhcc------------------------------ccchHHHHHHHHHHHhccccCCCccCceEEEeeCcH
Confidence 0000000000 00000011 1112222221 0112469999999999
Q ss_pred hHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC--ccEEEEecccccCccCCCccEEEEcCCCC
Q 000380 436 TARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE--LNLLVATKVGEEGLDIQTCCLVIRFDLPE 513 (1601)
Q Consensus 436 ~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~--~~vLVaT~vleeGIDip~~~~VI~fd~p~ 513 (1601)
+|+.+...|.+... .+...++.-+.+. .++-+..++.|...+ .+|.|+.+++..|||+|.|-++|.+-.-.
T Consensus 438 HAe~i~~~~~~~yp--e~~~~~a~~IT~d-----~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr 510 (875)
T COG4096 438 HAERIREALVNEYP--EYNGRYAMKITGD-----AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR 510 (875)
T ss_pred HHHHHHHHHHHhCc--cccCceEEEEecc-----chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh
Confidence 99999999987632 2333344443332 223344566675533 67899999999999999999999999999
Q ss_pred CHHHHHHHhhcC-CC
Q 000380 514 TVASFIQSRGRA-RM 527 (1601)
Q Consensus 514 s~~~yiQr~GRA-R~ 527 (1601)
|..-|.|++||| |.
T Consensus 511 SktkF~QMvGRGTRl 525 (875)
T COG4096 511 SKTKFKQMVGRGTRL 525 (875)
T ss_pred hHHHHHHHhcCcccc
Confidence 999999999997 75
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=236.77 Aligned_cols=97 Identities=26% Similarity=0.288 Sum_probs=77.5
Q ss_pred CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHH----HHHHHHH-hcCC---ccEEEEeccc
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAM----KSILEKF-RSGE---LNLLVATKVG 494 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r----~~~l~~F-r~g~---~~vLVaT~vl 494 (1601)
.+.++|||||++..|..+++.|++... ....+..+|+ .+...+| +++++.| ++|+ ..|||||+++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~----~~~~v~llHs---rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQVi 631 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN----TQVDIDLFHA---RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVV 631 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC----CCceEEEEeC---CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcch
Confidence 467999999999999999999986421 0112455676 4777777 4678899 6666 4799999999
Q ss_pred ccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCC
Q 000380 495 EEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQ 529 (1601)
Q Consensus 495 eeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~ 529 (1601)
|.|||| +++++|....| ..+++||+||+ |.+.
T Consensus 632 E~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 632 EQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred hheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 68999998777 68999999995 8765
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=230.74 Aligned_cols=165 Identities=25% Similarity=0.354 Sum_probs=118.3
Q ss_pred CCchhhhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHH-HhcCC-----CCcEEEEEeCChhHHHHHHHH
Q 000380 53 KDPKQIARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAH-LIRKP-----QKSICIFLAPTVALVQQQAKV 124 (1601)
Q Consensus 53 ~~~~~~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~-~~~~~-----~~~~vl~LvPt~~Lv~Q~~~~ 124 (1601)
..+...+-+.|-.+...++. .|+++|+|||+|||.+|++-|++-.. -.+.. ...++++++|.++||+.|...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 33444477889999999998 89999999999999999998843111 11100 123799999999999999998
Q ss_pred HHHHc---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc--cC-ccceeEEEEecCccccccCCCh
Q 000380 125 IEESI---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF--IK-MELIALLIFDECHHAQVKSNHP 198 (1601)
Q Consensus 125 l~~~~---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~--~~-l~~i~llI~DEaH~~~~~~~~~ 198 (1601)
|.+.+ |++|...+|+..... .++.+.+|+|+||+.. +.+.+.. .. .+-++++|+||.|.+.++....
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~------~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpv 456 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGK------EQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPV 456 (1674)
T ss_pred HHhhccccCcEEEEecccccchh------hhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccccchH
Confidence 87754 789999999976422 2355789999999987 3444331 11 3357999999999997544444
Q ss_pred HHHHHHHHcCCC--CCCCCEEEEEeccc
Q 000380 199 YAKIMKDFYKPD--IMKVPRIFGMTASP 224 (1601)
Q Consensus 199 ~~~i~~~~~~~~--~~~~p~ilgLTATP 224 (1601)
...|..+..+.. ...-.|++|||||.
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATL 484 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATL 484 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccC
Confidence 555555443322 13468999999997
|
|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-22 Score=201.11 Aligned_cols=120 Identities=44% Similarity=0.563 Sum_probs=97.1
Q ss_pred CHHHHHHHhCcccccC--CCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCccccc
Q 000380 1020 SAEMLLKALTTEKCQE--RFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097 (1601)
Q Consensus 1020 ~~~lll~AlT~~~~~~--~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~ 1097 (1601)
|++++++||||+|+.. ..||||||||||+||+++++.++|.++|. ++|.++..|+.+|+|.+|+.+|.++||+++|+
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 4689999999999752 46999999999999999999999999544 89999999999999999999999999999998
Q ss_pred ccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHhhccccccChHHHHH
Q 000380 1098 DQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATA 1177 (1601)
Q Consensus 1098 ~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAliGA~~~~~g~~~a~~ 1177 (1601)
| +.+ . .. .......|.+||+|||+|||+|+|+|++.|.+
T Consensus 80 --------~---~~~-------~----~~-------------------~~~~~~~~vlad~feAliGAiyld~G~~~a~~ 118 (128)
T PF14622_consen 80 --------W---GPG-------E----EK-------------------SGGSGSDKVLADVFEALIGAIYLDSGFEAARK 118 (128)
T ss_dssp -------------HH-------H----HH-------------------TTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred --------h---Ccc-------H----hh-------------------cCCCCCccHHHhHHHHHHHHHHHHcCHHHHHH
Confidence 2 110 0 00 01123688999999999999999999999999
Q ss_pred HHHH
Q 000380 1178 FLKW 1181 (1601)
Q Consensus 1178 ~~~~ 1181 (1601)
|+..
T Consensus 119 ~i~~ 122 (128)
T PF14622_consen 119 FIQK 122 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=241.40 Aligned_cols=310 Identities=18% Similarity=0.207 Sum_probs=193.0
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCC
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGG 139 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~ 139 (1601)
.+..++++.+.. +.+||+++||||||... |...+ . .......++++.-|.+.-+...+..+.+.++.+++...|.
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTql--Pq~ll-e-~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQL--PKICL-E-LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHHH--HHHHH-H-cCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 344556665555 56789999999999753 43111 1 1112234677788999888888999988888888887776
Q ss_pred CCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcc-ccccCCChHHHHHHHHcCCCCCCCCEEE
Q 000380 140 SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHH-AQVKSNHPYAKIMKDFYKPDIMKVPRIF 218 (1601)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~~~i~~~~~~~~~~~~p~il 218 (1601)
.....+.. -.+..|.|+|+++|++.+.+.. .+.++++|||||||. .++. .....+++...... +..+++
T Consensus 146 ~vR~~~~~-----s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~--D~LL~lLk~il~~r--pdLKlI 215 (1283)
T TIGR01967 146 KVRFHDQV-----SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNI--DFLLGYLKQLLPRR--PDLKII 215 (1283)
T ss_pred EEcCCccc-----CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccc--hhHHHHHHHHHhhC--CCCeEE
Confidence 33222111 1247899999999999887653 478999999999994 5421 11222333332211 235899
Q ss_pred EEeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHH
Q 000380 219 GMTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKR 297 (1601)
Q Consensus 219 gLTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 297 (1601)
.||||.. ...+.+.+. +.++.+... .-|.. +.|.+..... .
T Consensus 216 lmSATld--------------~~~fa~~F~~apvI~V~Gr-------~~PVe--v~Y~~~~~~~--~------------- 257 (1283)
T TIGR01967 216 ITSATID--------------PERFSRHFNNAPIIEVSGR-------TYPVE--VRYRPLVEEQ--E------------- 257 (1283)
T ss_pred EEeCCcC--------------HHHHHHHhcCCCEEEECCC-------cccce--eEEecccccc--c-------------
Confidence 9999971 123444443 223222211 00111 1111100000 0
Q ss_pred HHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHH
Q 000380 298 EQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQA 377 (1601)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 377 (1601)
+ ..
T Consensus 258 -----------------------------------------------------~-----------------~~------- 260 (1283)
T TIGR01967 258 -----------------------------------------------------D-----------------DD------- 260 (1283)
T ss_pred -----------------------------------------------------c-----------------hh-------
Confidence 0 00
Q ss_pred HHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccce
Q 000380 378 SEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHF 457 (1601)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~ 457 (1601)
..+...+.+.+........+.+|||++++..++.+++.|...+. +...
T Consensus 261 ----------------------------~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~----~~~~ 308 (1283)
T TIGR01967 261 ----------------------------LDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNL----RHTE 308 (1283)
T ss_pred ----------------------------hhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCC----CCcE
Confidence 00111111111111011346899999999999999999987532 2223
Q ss_pred EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCC------------------CCHHHHH
Q 000380 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP------------------ETVASFI 519 (1601)
Q Consensus 458 ~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p------------------~s~~~yi 519 (1601)
+..+|+ +++.++|..+++.+ +..+|||||+++|.|||||++++||+++.+ -|..+|.
T Consensus 309 VlpLhg---~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~ 383 (1283)
T TIGR01967 309 ILPLYA---RLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASAN 383 (1283)
T ss_pred EEeccC---CCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHH
Confidence 567777 59999999886654 236899999999999999999999999854 3568999
Q ss_pred HHhhcC-CCCCCeEEE-EEe
Q 000380 520 QSRGRA-RMPQSEYAF-LVD 537 (1601)
Q Consensus 520 Qr~GRA-R~g~s~~vi-lv~ 537 (1601)
||+||| |.+ .|.|+ +++
T Consensus 384 QRaGRAGR~~-~G~cyRLyt 402 (1283)
T TIGR01967 384 QRKGRCGRVA-PGICIRLYS 402 (1283)
T ss_pred HHhhhhCCCC-CceEEEecC
Confidence 999996 876 77777 665
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=204.88 Aligned_cols=166 Identities=25% Similarity=0.248 Sum_probs=126.5
Q ss_pred CChhHHHHHHHhhcCCCccccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhcCCCC
Q 000380 1380 LNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVP 1454 (1601)
Q Consensus 1380 ~~p~~~L~e~~~~~~~~~~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 1454 (1601)
+.|++.|||++.+++..+.|+. +.|++.|++.|.|+.. .+.|.|+|||.||++||..+|+.|+......
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg~~------~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~ 111 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVGEI------TATGEGKSKKLAKHRAAEALLKELKKLPPLA 111 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEeee------EEecCCCchhHHHHHHHHHHHHHHhcCCCcc
Confidence 8999999999999998887665 7899999999999844 4999999999999999999999998755331
Q ss_pred CCccHHHHhhcCccccccccccCCCCccccCCchhhhhhccccCCCCCCCCCCCCCc--cccCCcccCchhHHHHHHHHh
Q 000380 1455 KTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSSCDIGSPS--LTTGGLQNRSARSRLYELCAA 1532 (1601)
Q Consensus 1455 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~e~~~~ 1532 (1601)
.-.+ ......++. .+.+ .++.+. .+. ...|++++|+|+||+
T Consensus 112 ~v~k---~~~~~~~~~--------~~~~-----------------------~~~q~~d~~~~---~~~NPI~~L~e~~q~ 154 (339)
T KOG3732|consen 112 NVRK---DSLKFAKMK--------SSGV-----------------------KKDQPGDPEYG---QVLNPIGRLQELAQA 154 (339)
T ss_pred cccc---Ccccccccc--------cCCc-----------------------cccCCCCcccc---cccChHHHHHHHHHH
Confidence 1100 000000000 0000 000000 011 124999999999999
Q ss_pred CCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHH
Q 000380 1533 NCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1533 ~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~ 1595 (1601)
++|+.|.|+++++.|++|.+.|++.|+|+ + +.-.|.|.| ||.||++||.+||..|.
T Consensus 155 k~~k~P~yelv~E~G~~~~rEFv~q~sv~----~--~~~~GkG~s-KKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 155 KKWKLPEYELVQESGVPHRREFVIQCSVE----N--FTEEGKGPS-KKIAKRNAAEAMLESLG 210 (339)
T ss_pred hCCCCCceEEEeccCCCccceEEEEEEec----c--eeeecCCch-HHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999995 2 333699999 99999999999999886
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=196.26 Aligned_cols=291 Identities=18% Similarity=0.275 Sum_probs=195.3
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFC 137 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~ 137 (1601)
.||.|.+++...+. +++++.+|||.||+++|.+|.+- ....+|++||..+|+++|.-.++.. |+....+.
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--------adg~alvi~plislmedqil~lkql-gi~as~ln 165 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--------ADGFALVICPLISLMEDQILQLKQL-GIDASMLN 165 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--------cCCceEeechhHHHHHHHHHHHHHh-Ccchhhcc
Confidence 79999999999998 89999999999999999999732 2456999999999999999888764 77776665
Q ss_pred CCCCcCCchhhHHh-hh----ccCeEEEEcHHHHHHH---Hhc--cccCccceeEEEEecCccccccCCCh---H--HHH
Q 000380 138 GGSKRLKSHCDWEK-EI----DQYEVLVMIPQILLYC---LYH--RFIKMELIALLIFDECHHAQVKSNHP---Y--AKI 202 (1601)
Q Consensus 138 G~~~~~~~~~~~~~-~~----~~~~VlV~Tp~~l~~~---l~~--~~~~l~~i~llI~DEaH~~~~~~~~~---~--~~i 202 (1601)
...+.. ...|-. .+ ....++..||+.+... +++ ..+....+.+|-+||+|++..||... | ..|
T Consensus 166 ansske--~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 166 ANSSKE--EAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred CcccHH--HHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 554422 222321 11 2357899999987631 111 13445678999999999998887431 3 245
Q ss_pred HHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEE-ecCCCCCC
Q 000380 203 MKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQ-YGPVINDT 281 (1601)
Q Consensus 203 ~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~-~~~~~~~~ 281 (1601)
+++-+. -..++|||||..+.... -.+.+..++..+. ++ .-..+|.+.... -.|.
T Consensus 244 lkrqf~-----~~~iigltatatn~vl~-----d~k~il~ie~~~t---f~--------a~fnr~nl~yev~qkp~---- 298 (695)
T KOG0353|consen 244 LKRQFK-----GAPIIGLTATATNHVLD-----DAKDILCIEAAFT---FR--------AGFNRPNLKYEVRQKPG---- 298 (695)
T ss_pred HHHhCC-----CCceeeeehhhhcchhh-----HHHHHHhHHhhhe---ee--------cccCCCCceeEeeeCCC----
Confidence 555332 24599999997443211 0011111111110 00 011122111000 0000
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHh
Q 000380 282 SSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEA 361 (1601)
Q Consensus 282 ~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~ 361 (1601)
T Consensus 299 -------------------------------------------------------------------------------- 298 (695)
T KOG0353|consen 299 -------------------------------------------------------------------------------- 298 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHh-hcccCCCceEEEEecchhhHHHH
Q 000380 362 EGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILS-TFRLQQHMKCIVFVNRIVTARAL 440 (1601)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~-~~~~~~~~k~IIFv~~r~~a~~L 440 (1601)
+. .+-.+.+..+++ .| .+..+||||-++..++.+
T Consensus 299 -------n~-----------------------------------dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~ekv 333 (695)
T KOG0353|consen 299 -------NE-----------------------------------DDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCEKV 333 (695)
T ss_pred -------Ch-----------------------------------HHHHHHHHHHhcccc---CCCcceEEEeccccHHHH
Confidence 00 011112222232 22 466899999999999999
Q ss_pred HHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHH
Q 000380 441 SYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQ 520 (1601)
Q Consensus 441 ~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQ 520 (1601)
+..|+.+++. .-.+|. .|.++++.-+-+.+-.|++.|+|||-+.+.|||-|+++.|||..+|.+...|.|
T Consensus 334 a~alkn~gi~-------a~~yha---~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 334 AKALKNHGIH-------AGAYHA---NLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred HHHHHhcCcc-------cccccc---ccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 9999987652 112344 588888888889999999999999999999999999999999999999999999
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=211.89 Aligned_cols=322 Identities=21% Similarity=0.294 Sum_probs=211.4
Q ss_pred CCCchhhhhHHHHHHHHHHhc----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 52 DKDPKQIARKYQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 52 ~~~~~~~~R~yQ~e~~~~~l~----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
..+|..++||||...+.++.. +..||++|.|+|||++.+.++.. -+|++|+||.+..-|+||...|..
T Consensus 296 dLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t--------ikK~clvLcts~VSVeQWkqQfk~ 367 (776)
T KOG1123|consen 296 DLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT--------IKKSCLVLCTSAVSVEQWKQQFKQ 367 (776)
T ss_pred CcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee--------ecccEEEEecCccCHHHHHHHHHh
Confidence 566788899999999999987 67899999999999998776532 267899999999999999999999
Q ss_pred HcCC---cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc--------ccCccceeEEEEecCccccccCC
Q 000380 128 SIGF---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR--------FIKMELIALLIFDECHHAQVKSN 196 (1601)
Q Consensus 128 ~~~l---~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~--------~~~l~~i~llI~DEaH~~~~~~~ 196 (1601)
+..+ .+..++.+..++.. .++.|+|+|+.++..--.+. ++.-..|+++|+||+|.+. .
T Consensus 368 wsti~d~~i~rFTsd~Ke~~~--------~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP---A 436 (776)
T KOG1123|consen 368 WSTIQDDQICRFTSDAKERFP--------SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP---A 436 (776)
T ss_pred hcccCccceEEeeccccccCC--------CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch---H
Confidence 8754 57777777654222 36889999999886433222 4556779999999999983 4
Q ss_pred ChHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecC
Q 000380 197 HPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGP 276 (1601)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 276 (1601)
+.|++++...... -.||||||.++.+.. |..|.-+++.++|...-. ++ .....+..+.+..
T Consensus 437 ~MFRRVlsiv~aH------cKLGLTATLvREDdK---------I~DLNFLIGPKlYEAnWm-dL---~~kGhIA~VqCaE 497 (776)
T KOG1123|consen 437 KMFRRVLSIVQAH------CKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWM-DL---QKKGHIAKVQCAE 497 (776)
T ss_pred HHHHHHHHHHHHH------hhccceeEEeecccc---------ccccceeecchhhhccHH-HH---HhCCceeEEeeee
Confidence 5677777665332 249999999987765 344444555555544222 11 1111111111111
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHH
Q 000380 277 VINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRN 356 (1601)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~ 356 (1601)
.||+....
T Consensus 498 ------------------------------------------------------------VWCpMt~e------------ 505 (776)
T KOG1123|consen 498 ------------------------------------------------------------VWCPMTPE------------ 505 (776)
T ss_pred ------------------------------------------------------------eecCCCHH------------
Confidence 23321100
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhh
Q 000380 357 ELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 357 ~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~ 436 (1601)
-...|+.+..+. .. -+..++ ..|++. .+.|-.|....+.++|||......
T Consensus 506 ------------Fy~eYL~~~t~k----r~---------lLyvMN----P~KFra-CqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123|consen 506 ------------FYREYLRENTRK----RM---------LLYVMN----PNKFRA-CQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred ------------HHHHHHhhhhhh----hh---------eeeecC----cchhHH-HHHHHHHHHhcCCeEEEEeccHHH
Confidence 000111000000 00 000000 234433 333333334568899999998766
Q ss_pred HHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC-ccEEEEecccccCccCCCccEEEEcCCC-CC
Q 000380 437 ARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE-LNLLVATKVGEEGLDIQTCCLVIRFDLP-ET 514 (1601)
Q Consensus 437 a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~-~~vLVaT~vleeGIDip~~~~VI~fd~p-~s 514 (1601)
....+-.|.+ -++.| ..++.+|..+++.|+-.. +|-++-+.|+...||+|.++++|....- .|
T Consensus 556 Lk~YAikl~K---------pfIYG------~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GS 620 (776)
T KOG1123|consen 556 LKEYAIKLGK---------PFIYG------PTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGS 620 (776)
T ss_pred HHHHHHHcCC---------ceEEC------CCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccc
Confidence 5555544433 12333 478999999999998765 9999999999999999999999987654 56
Q ss_pred HHHHHHHhhcC-CCC
Q 000380 515 VASFIQSRGRA-RMP 528 (1601)
Q Consensus 515 ~~~yiQr~GRA-R~g 528 (1601)
-++-.||.||. |+.
T Consensus 621 RRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 621 RRQEAQRLGRILRAK 635 (776)
T ss_pred hHHHHHHHHHHHHHh
Confidence 78999999994 543
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=188.13 Aligned_cols=312 Identities=19% Similarity=0.209 Sum_probs=197.8
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG- 130 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~- 130 (1601)
+.+.++|..+-+.+++ +++||.+-||+|||-.-.-.|.. .+ ..|.++.+..|.+..|...+.++++-+.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~---al--~~G~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQ---AL--NQGGRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHH---HH--hcCCeEEEecCcccchHHHHHHHHHhhcc
Confidence 4577899877655544 78999999999999876555532 12 2477899999999999999999988664
Q ss_pred CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCC
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~ 210 (1601)
..+..++|+..+..+ ..++|+|...|++.. +.++++||||++..--..+.......+.-..
T Consensus 171 ~~I~~Lyg~S~~~fr----------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark-- 231 (441)
T COG4098 171 CDIDLLYGDSDSYFR----------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK-- 231 (441)
T ss_pred CCeeeEecCCchhcc----------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhc--
Confidence 899999999865322 668888877666533 3579999999999843223322223333222
Q ss_pred CCCCCEEEEEeccccCCCCCccccchHHHHHHHHH-hccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHH
Q 000380 211 IMKVPRIFGMTASPVVGKGASAQANLPKSINSLEN-LLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS 289 (1601)
Q Consensus 211 ~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~-~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (1601)
..--.+.|||||.. +|++ ........+.-. .+|-.+|-.. + .
T Consensus 232 --~~g~~IylTATp~k---------------~l~r~~~~g~~~~~klp---~RfH~~pLpv---------P--k------ 274 (441)
T COG4098 232 --KEGATIYLTATPTK---------------KLERKILKGNLRILKLP---ARFHGKPLPV---------P--K------ 274 (441)
T ss_pred --ccCceEEEecCChH---------------HHHHHhhhCCeeEeecc---hhhcCCCCCC---------C--c------
Confidence 22346789999932 2211 111111111000 0111111000 0 0
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchH
Q 000380 290 EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS 369 (1601)
Q Consensus 290 ~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 369 (1601)
-.|+...
T Consensus 275 ----------------------------------------------f~w~~~~--------------------------- 281 (441)
T COG4098 275 ----------------------------------------------FVWIGNW--------------------------- 281 (441)
T ss_pred ----------------------------------------------eEEeccH---------------------------
Confidence 0011000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc
Q 000380 370 LCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF 449 (1601)
Q Consensus 370 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~ 449 (1601)
.+.+. ..-+.+| |...|+.. ...+..++||++++.+.+.++..|+..-
T Consensus 282 -~k~l~--------------------------r~kl~~k---l~~~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~~- 329 (441)
T COG4098 282 -NKKLQ--------------------------RNKLPLK---LKRWLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKKL- 329 (441)
T ss_pred -HHHhh--------------------------hccCCHH---HHHHHHHH-HhcCCcEEEEecchHHHHHHHHHHHhhC-
Confidence 00000 0000222 33334333 2457799999999999999999996531
Q ss_pred ccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCC--CCCHHHHHHHhhcC-C
Q 000380 450 LASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDL--PETVASFIQSRGRA-R 526 (1601)
Q Consensus 450 ~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~--p~s~~~yiQr~GRA-R 526 (1601)
....+..+|+ ....|.+.+++||+|++.+||+|.++|+|+.+|+++++|.=.- -.+-.+.+|..||+ |
T Consensus 330 ----~~~~i~~Vhs-----~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGR 400 (441)
T COG4098 330 ----PKETIASVHS-----EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGR 400 (441)
T ss_pred ----Cccceeeeec-----cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccC
Confidence 2233455665 3456788999999999999999999999999999998775332 25778999999994 7
Q ss_pred CC--CCeEEEEEeCCCHhH
Q 000380 527 MP--QSEYAFLVDSGNQRE 543 (1601)
Q Consensus 527 ~g--~s~~vilv~~~~~~~ 543 (1601)
.- ..|.++++..+....
T Consensus 401 s~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 401 SLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred CCcCCCCcEEEEeccchHH
Confidence 54 457888887775543
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-21 Score=194.76 Aligned_cols=117 Identities=38% Similarity=0.497 Sum_probs=103.3
Q ss_pred HHHHHhCcccccCCC-CCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCcccccccCC
Q 000380 1023 MLLKALTTEKCQERF-SLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPF 1101 (1601)
Q Consensus 1023 lll~AlT~~~~~~~~-~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f 1101 (1601)
++++||||+|+.... ||||||||||+||+++++.++|.++|+.++|.|+.+|+.+|||++|+++|.++||++|++..+.
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 689999999998876 9999999999999999999999999999999999999999999999999999999999983321
Q ss_pred CCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHhhccccccChHHHHHHHH
Q 000380 1102 DPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLK 1180 (1601)
Q Consensus 1102 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAliGA~~~~~g~~~a~~~~~ 1180 (1601)
... .....+.|.+||+|||+|||+|+++|++.+.+|+.
T Consensus 82 ~~~-----------------------------------------~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~ 119 (129)
T smart00535 82 EAI-----------------------------------------SGGRDKPSILADVFEALIGAIYLDSGLEAAREFIR 119 (129)
T ss_pred Hhh-----------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 100 00113689999999999999999999999999884
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-21 Score=196.24 Aligned_cols=119 Identities=42% Similarity=0.543 Sum_probs=106.2
Q ss_pred HHHHHhCcccccCC---CCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCccccccc
Q 000380 1023 MLLKALTTEKCQER---FSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099 (1601)
Q Consensus 1023 lll~AlT~~~~~~~---~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~ 1099 (1601)
++++||||+|+... .||||||||||++|+++++.++|..+|+.++|.++.+|+.+|||++|+++|.++||++||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 68899999999775 899999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHhhccccccChHHHHHHH
Q 000380 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFL 1179 (1601)
Q Consensus 1100 ~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAliGA~~~~~g~~~a~~~~ 1179 (1601)
+.... .....++|.+||+|||||||+|+++|.+.+.+||
T Consensus 82 ~~~~~-----------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i 120 (133)
T cd00593 82 KGEEK-----------------------------------------SGGRLRPKILADVFEALIGAIYLDGGFEAARKFL 120 (133)
T ss_pred chHhh-----------------------------------------cCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22110 0123479999999999999999999999999999
Q ss_pred HHh
Q 000380 1180 KWI 1182 (1601)
Q Consensus 1180 ~~l 1182 (1601)
.++
T Consensus 121 ~~~ 123 (133)
T cd00593 121 LRL 123 (133)
T ss_pred HHH
Confidence 885
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=211.84 Aligned_cols=134 Identities=33% Similarity=0.438 Sum_probs=114.2
Q ss_pred HHHHHHhcCCCCCCccCCHHHHHHHhCccccc----CCCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhh
Q 000380 1003 IELKHLLSASFPEGAEVSAEMLLKALTTEKCQ----ERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAV 1078 (1601)
Q Consensus 1003 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~~~~----~~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1078 (1601)
..+.+.|++.|. ++.++++||||+|+. ...||||||||||++|+++++.+||.+||+.++|.|+.+|+.+|
T Consensus 6 ~~l~~~lg~~f~-----~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lv 80 (229)
T PRK00102 6 EELQKKLGYTFK-----DPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALV 80 (229)
T ss_pred HHHHHHhCCCCC-----CHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHh
Confidence 357788888874 489999999999985 35699999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHH
Q 000380 1079 NNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADV 1158 (1601)
Q Consensus 1079 ~N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~ 1158 (1601)
||++|+.+|.++||++||+..+ +.. . . ....++|.+||+
T Consensus 81 sn~~la~~a~~lgl~~~i~~~~---------~~~------------~---~-----------------~~~~~~k~~ad~ 119 (229)
T PRK00102 81 REESLAEIARELGLGEYLLLGK---------GEE------------K---S-----------------GGRRRPSILADA 119 (229)
T ss_pred CHHHHHHHHHHCCcHHHHccCc---------HHH------------H---c-----------------CCCCCccHHHHH
Confidence 9999999999999999998221 000 0 0 001247899999
Q ss_pred HHHHhhccccccChHHHHHHHHHh
Q 000380 1159 VEALVGAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1159 ~EAliGA~~~~~g~~~a~~~~~~l 1182 (1601)
|||+|||+|+|+|++.+.+|+..+
T Consensus 120 ~EA~iGAiyld~g~~~~~~~i~~~ 143 (229)
T PRK00102 120 FEALIGAIYLDQGLEAARKFILRL 143 (229)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999998765
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-21 Score=191.05 Aligned_cols=110 Identities=43% Similarity=0.638 Sum_probs=88.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCC
Q 000380 1246 QRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSS 1325 (1601)
Q Consensus 1246 erLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~ 1325 (1601)
|||||||||||+++|+.|||.+||+.+|+.||.+|+.+|||++|+.+|+++||++|++..+.....++..+.+.+.....
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999999999999999999999999999999999998776665555553322221111
Q ss_pred c----ccccCCCCCCchhhhHHHHhhhhhhhcCC
Q 000380 1326 T----REVKEGPRCPKVLGDLVESSLGAILLDSG 1355 (1601)
Q Consensus 1326 ~----~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g 1355 (1601)
. .........||++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0 00112334689999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=222.76 Aligned_cols=415 Identities=18% Similarity=0.218 Sum_probs=246.3
Q ss_pred hhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 56 KQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
.+.+|+||...+++... -|.|++.+||.|||.+.+.+|..+.... ......||+||+..|+. |..+|..+.+
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K--~~~GP~LvivPlstL~N-W~~Ef~kWaP 468 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK--QMQGPFLIIVPLSTLVN-WSSEFPKWAP 468 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc--ccCCCeEEeccccccCC-chhhcccccc
Confidence 45699999999999887 3689999999999999999986544322 22334799999988876 8888988864
Q ss_pred -CcEEEEeCCCCcCCchhhHHhh--hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh--HHHHHHH
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKE--IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP--YAKIMKD 205 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~~~~~--~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~--~~~i~~~ 205 (1601)
+....|.|...... .+..+ ..+.+|+++|++-+.. ....+.--+|.++||||.|++ ++|. ....+..
T Consensus 469 Sv~~i~YkGtp~~R~---~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRm---KNa~~KLt~~L~t 540 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRS---GLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRM---KNAICKLTDTLNT 540 (1157)
T ss_pred ceeeeeeeCCHHHHh---hHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccc---cchhhHHHHHhhc
Confidence 67777777654211 11111 2468999999997764 333444556889999999999 3442 3344443
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEee-cCHHHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSV-EDAEDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~-~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
+|+ .++.|.||+||.. +++.+|+.+|+-..-.+ .....+..|...|--..- ...+++..
T Consensus 541 ~y~-----~q~RLLLTGTPLQ-----------N~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantG----ek~eLteE 600 (1157)
T KOG0386|consen 541 HYR-----AQRRLLLTGTPLQ-----------NNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTG----EKVELTEE 600 (1157)
T ss_pred ccc-----chhhhhhcCChhh-----------hccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcC----Ccccccch
Confidence 443 4788999999954 45667777776443332 233455666655521111 00111111
Q ss_pred -hhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHH-H-h
Q 000380 285 -YVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELI-E-A 361 (1601)
Q Consensus 285 -~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~-~-~ 361 (1601)
...+...+..+.+.+....+.+.... .+..+..+.. -|...+++..+.........+. + .
T Consensus 601 EtlLIIrRLHkVLRPFlLRRlKkeVE~------------~LPdKve~vi-----KC~mSalQq~lY~~m~~~g~l~~d~~ 663 (1157)
T KOG0386|consen 601 ETLLIIRRLHKVLRPFLLRRLKKEVEQ------------ELPDKVEDVI-----KCDMSALQQSLYKQMQNKGQLLKDTA 663 (1157)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhHHHhh------------hCchhhhHhh-----heehhhhhHhhhHHHHhCCCCCcCch
Confidence 11123333333333332222222111 1111111100 0111111111000000000000 0 0
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhcCCCCCc----cchhhhc-cCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhh
Q 000380 362 EGNTIDDSLCRFASQASEVFAAICRRDGIASD----LSCIEVL-KEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----~~~~~~l-~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~ 436 (1601)
.+......+.. ..-.+...|.....+.+ +...-.. .--..++|+..|..+|..+. ..+++++.|++....
T Consensus 664 ~g~~g~k~L~N----~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrl 738 (1157)
T KOG0386|consen 664 KGKKGYKPLFN----TIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRL 738 (1157)
T ss_pred hccccchhhhh----HhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHH
Confidence 01111111111 12223334433222211 1000000 00123889999999999875 568999999999988
Q ss_pred HHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC---ccEEEEecccccCccCCCccEEEEcCCCC
Q 000380 437 ARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE---LNLLVATKVGEEGLDIQTCCLVIRFDLPE 513 (1601)
Q Consensus 437 a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~---~~vLVaT~vleeGIDip~~~~VI~fd~p~ 513 (1601)
...+..+|.-... + ...+.| ....++|-..++.|..-. ..+|.+|.+++.|+|++.++.||.||..|
T Consensus 739 mdimEdyL~~~~~----k---YlRLDG---~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw 808 (1157)
T KOG0386|consen 739 MDILEDYLQIREY----K---YLRLDG---QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW 808 (1157)
T ss_pred HHHHHHHHhhhhh----h---eeeecC---CcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC
Confidence 8888888875432 2 223333 467788999999998754 55789999999999999999999999999
Q ss_pred CHHHHHHHhhcC-CCCCCeEE
Q 000380 514 TVASFIQSRGRA-RMPQSEYA 533 (1601)
Q Consensus 514 s~~~yiQr~GRA-R~g~s~~v 533 (1601)
|+..+.|+..|| |.|+..-|
T Consensus 809 np~~d~qaqdrahrigq~~ev 829 (1157)
T KOG0386|consen 809 NPHQDLQAQDRAHRIGQKKEV 829 (1157)
T ss_pred CchhHHHHHHHHHHhhchhhe
Confidence 999999999999 99998755
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-21 Score=190.60 Aligned_cols=113 Identities=38% Similarity=0.558 Sum_probs=90.9
Q ss_pred ccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCcccccccCCCCCccccC-CCCcccccc
Q 000380 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFAL-GRRCPRICS 1118 (1601)
Q Consensus 1040 ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~-~~~~~~~~~ 1118 (1601)
||||||||+||+++++.+||.+||+.++|.||.+|+.+|||++|+.+|.++||+.||+..+|++..|+.+ +..
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~------ 74 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNED------ 74 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHH------
Confidence 8999999999999999999999999999999999999999999999999999999999999988888754 000
Q ss_pred chhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHhhccccccC
Q 000380 1119 KETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSG 1171 (1601)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAliGA~~~~~g 1171 (1601)
... .++.. ........+...+|.+||+|||||||+|+|+|
T Consensus 75 ------~~~-~~~~~------~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 75 ------LNN-GDSES------SISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp --------------C-------SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHh-ccccc------ccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 000 00000 00001124667899999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=213.70 Aligned_cols=383 Identities=16% Similarity=0.174 Sum_probs=220.6
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
.+-.+|.+++....+ ..+.|+++|.+|||++|-.+|.- .+ ..+.|+++-.|-++|-+|-++.|+..+| .|+.+
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq----~h~TR~iYTSPIKALSNQKfRDFk~tF~-DvgLl 370 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQ----KHMTRTIYTSPIKALSNQKFRDFKETFG-DVGLL 370 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HH----hhccceEecchhhhhccchHHHHHHhcc-cccee
Confidence 355789999999888 77999999999999999887732 21 2367899999999999999999998775 45699
Q ss_pred eCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCC-ChHHHHHHHHcCCCCCCCC
Q 000380 137 CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSN-HPYAKIMKDFYKPDIMKVP 215 (1601)
Q Consensus 137 ~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~~~i~~~~~~~~~~~~p 215 (1601)
+|+..... .+..+|||.++|.++|-++.--++++.+|||||+|-+.+... +.|..++--+ .+.-
T Consensus 371 TGDvqinP----------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl-----P~HV 435 (1248)
T KOG0947|consen 371 TGDVQINP----------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML-----PRHV 435 (1248)
T ss_pred ecceeeCC----------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec-----cccc
Confidence 99976433 378999999999999999877788999999999999954322 2344333221 2346
Q ss_pred EEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHH
Q 000380 216 RIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEI 295 (1601)
Q Consensus 216 ~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i 295 (1601)
.++.||||.-+.. +...-+.++-+..++.++.. . -+-|-+..+.+... +..++.+-
T Consensus 436 ~~IlLSATVPN~~---------EFA~WIGRtK~K~IyViST~---k--RPVPLEh~l~t~~~----------l~kiidq~ 491 (1248)
T KOG0947|consen 436 NFILLSATVPNTL---------EFADWIGRTKQKTIYVISTS---K--RPVPLEHYLYTKKS----------LFKIIDQN 491 (1248)
T ss_pred eEEEEeccCCChH---------HHHHHhhhccCceEEEEecC---C--CccceEEEEEeccc----------eehhhccc
Confidence 7899999973322 12223333333444443321 0 01122333322211 01000000
Q ss_pred HHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHH
Q 000380 296 KREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFAS 375 (1601)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~ 375 (1601)
... +.+. ++..... ++ +...+...+ ...+..........
T Consensus 492 g~f-----l~~~------~~~a~~~--------------~~------------~~ak~~~~~--~~~~~~~rgs~~~g-- 530 (1248)
T KOG0947|consen 492 GIF-----LLKG------IKDAKDS--------------LK------------KEAKFVDVE--KSDARGGRGSQKRG-- 530 (1248)
T ss_pred chh-----hhhc------chhhhhh--------------hc------------ccccccccc--cccccccccccccC--
Confidence 000 0000 0000000 00 000000000 00000000000000
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccc---
Q 000380 376 QASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS--- 452 (1601)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~--- 452 (1601)
.+.......+.-...... ..|-....+++......+-..+||||-++..|+.-+++|........
T Consensus 531 ----------gk~~~~~g~~r~~~~~~n--rr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 531 ----------GKTNYHNGGSRGSGIGKN--RRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred ----------CcCCCCCCCccccccccc--ccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 000000000000000000 01101344444444444567899999999999999999876521100
Q ss_pred -------------ccc---------------ceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCcc
Q 000380 453 -------------WRC---------------HFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCC 504 (1601)
Q Consensus 453 -------------~~~---------------~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~ 504 (1601)
++. ..-+++|++ ++-+=-++-+..-|..|-++||+||-.++.|+|.|+-.
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~--GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHG--GLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcc--cchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 000 022455555 46666667777889999999999999999999999888
Q ss_pred EEEE----cCC----CCCHHHHHHHhhcC-CCC--CCeEEEEEeCCC
Q 000380 505 LVIR----FDL----PETVASFIQSRGRA-RMP--QSEYAFLVDSGN 540 (1601)
Q Consensus 505 ~VI~----fd~----p~s~~~yiQr~GRA-R~g--~s~~vilv~~~~ 540 (1601)
+|+. .|- --++-.|.|+.||| |+| ..|+|+++..+.
T Consensus 677 vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 677 VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 7772 111 23678999999997 888 458888877665
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-20 Score=205.12 Aligned_cols=131 Identities=32% Similarity=0.410 Sum_probs=111.1
Q ss_pred HHHhcCCCCCCccCCHHHHHHHhCcccccC-----CCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhcc
Q 000380 1006 KHLLSASFPEGAEVSAEMLLKALTTEKCQE-----RFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNN 1080 (1601)
Q Consensus 1006 ~~~l~~~~~~~~~~~~~lll~AlT~~~~~~-----~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N 1080 (1601)
...|++.|. +++++.+||||+|+.. ..||||||||||++|+++++.++|..||+.++|.|+.+|+.+|||
T Consensus 2 e~~lgy~F~-----~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn 76 (220)
T TIGR02191 2 EKRLGYKFK-----NKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSE 76 (220)
T ss_pred hHHhCCCcC-----CHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCH
Confidence 456778774 4899999999999753 349999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHH
Q 000380 1081 SNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVE 1160 (1601)
Q Consensus 1081 ~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~E 1160 (1601)
.+|+.+|.++||++||+..+ +.. . ....-.+|.+||+||
T Consensus 77 ~~la~~a~~~gl~~~i~~~~---------~~~------------~--------------------~~~~~~~k~~ad~~e 115 (220)
T TIGR02191 77 ESLAEVARELGLGKFLLLGK---------GEE------------K--------------------SGGRRRESILADAFE 115 (220)
T ss_pred HHHHHHHHHCCcHHHhccCc---------hHh------------h--------------------cCCcccchHHHHHHH
Confidence 99999999999999998221 000 0 001124789999999
Q ss_pred HHhhccccccChHHHHHHHHHh
Q 000380 1161 ALVGAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1161 AliGA~~~~~g~~~a~~~~~~l 1182 (1601)
|+|||+|+|+|++.|.+|+..+
T Consensus 116 AliGAiyld~g~~~~~~~i~~~ 137 (220)
T TIGR02191 116 ALIGAIYLDSGLEAARKFILKL 137 (220)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999998754
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=199.34 Aligned_cols=139 Identities=31% Similarity=0.454 Sum_probs=114.0
Q ss_pred hcHHHHHHHhCCccCCHHHHHHhhcCCCCCCC------------------------------------------------
Q 000380 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSFNRL------------------------------------------------ 1241 (1601)
Q Consensus 1210 ~~~~~le~~lgy~F~~~~ll~~Alth~s~~~~------------------------------------------------ 1241 (1601)
..+.-||+.|||+|+|+.||.-||||||+..+
T Consensus 41 ~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~ 120 (533)
T KOG1817|consen 41 QSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLG 120 (533)
T ss_pred HhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 45778999999999999999999999998631
Q ss_pred --------CCCCchhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHhhcCcchhhhh
Q 000380 1242 --------GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETI 1313 (1601)
Q Consensus 1242 --------~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~~~~~~~~~i 1313 (1601)
...+||||||||++.+++.+.++|..+|..+.|.|...|++.|.|..++.++.++.++.++....+.-
T Consensus 121 ~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~yahg~d---- 196 (533)
T KOG1817|consen 121 VIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYD---- 196 (533)
T ss_pred CCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcc----
Confidence 11279999999999999999999999999999999999999999999999999999999987643210
Q ss_pred hhhhhhccCCCCcccccCCCCCCchhhhHHHHhhhhhhhcCCCChHHHHHHHHHhh
Q 000380 1314 NNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFL 1369 (1601)
Q Consensus 1314 ~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~ 1369 (1601)
.....+.-..+++.|||++||+|+|.|.. .....+.+.+
T Consensus 197 ---------------l~~~~E~Kha~an~feavi~a~~l~g~~~--~~e~lfs~~~ 235 (533)
T KOG1817|consen 197 ---------------LCFETELKHAMANCFEAVIGAKYLDGGLV--VAEKLFSRAL 235 (533)
T ss_pred ---------------hhhHHHHHHHHHHHHHHHhHHHHHhcchH--HHHHHHHHHh
Confidence 00011223568999999999999999875 5555555444
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=199.86 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=141.6
Q ss_pred hhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000380 56 KQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI- 129 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~- 129 (1601)
.+.+|+||...++++.. -|.|+++++|.|||+..+.++.+++- ..+.-+.-||+|||..+ -.|.-+|++++
T Consensus 613 rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLAC--eegnWGPHLIVVpTsvi-LnWEMElKRwcP 689 (1958)
T KOG0391|consen 613 RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLAC--EEGNWGPHLIVVPTSVI-LNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHh--cccCCCCceEEeechhh-hhhhHHHhhhCC
Confidence 34699999998887655 47899999999999999888654432 12223457999999666 55999999998
Q ss_pred CCcEEEEeCCCCc-CCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcC
Q 000380 130 GFKVRTFCGGSKR-LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 130 ~l~v~~~~G~~~~-~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~ 208 (1601)
++++..|+|.... ...+..|.+ ....+|.|++|..+...+. .++-.+|.++|+||||++.++...-|..++. |
T Consensus 690 glKILTYyGs~kErkeKRqgW~k-PnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfksqrWQAlln-f-- 763 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAK-PNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFKSQRWQALLN-F-- 763 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccC-CCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchhHHHHHHHhc-c--
Confidence 5999999999654 334456765 3446899999998876544 3455789999999999997655444544443 2
Q ss_pred CCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEE-eecCHHHHhcccCCCeEEEE
Q 000380 209 PDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVY-SVEDAEDLESFVSSPVVRVY 272 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~-~~~~~~~l~~~~~~p~~~~~ 272 (1601)
+..|.|.||+|| +.+.+-+|+++++--+- ++.+......|..+|....+
T Consensus 764 ----nsqrRLLLtgTP-----------LqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmi 813 (1958)
T KOG0391|consen 764 ----NSQRRLLLTGTP-----------LQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMI 813 (1958)
T ss_pred ----chhheeeecCCc-----------hhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhc
Confidence 346789999999 55677888888886543 24566678888888854443
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=212.12 Aligned_cols=149 Identities=22% Similarity=0.222 Sum_probs=119.9
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC---c
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF---K 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l---~ 132 (1601)
+.+-++|.+++..+-+ ++++|++|||+|||+++-.+|.. .++ .+.++++..|.++|.+|.++.|...++- .
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~---al~--~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~ 192 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIAL---ALR--DGQRVIYTSPIKALSNQKYRDLLAKFGDVADM 192 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHH---HHH--cCCceEeccchhhhhhhHHHHHHHHhhhhhhh
Confidence 4577899999998888 89999999999999999988732 122 2456999999999999999999887662 3
Q ss_pred EEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~ 211 (1601)
+++++|+..... ++.++|+|.++|.+++.++...+..+..|||||+|.+.+..... |..++...
T Consensus 193 vGL~TGDv~IN~----------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l----- 257 (1041)
T COG4581 193 VGLMTGDVSINP----------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL----- 257 (1041)
T ss_pred ccceecceeeCC----------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc-----
Confidence 688999976543 37899999999999999998889999999999999997655444 55555543
Q ss_pred CCCCEEEEEecccc
Q 000380 212 MKVPRIFGMTASPV 225 (1601)
Q Consensus 212 ~~~p~ilgLTATP~ 225 (1601)
.+.-++++||||..
T Consensus 258 P~~v~~v~LSATv~ 271 (1041)
T COG4581 258 PDHVRFVFLSATVP 271 (1041)
T ss_pred CCCCcEEEEeCCCC
Confidence 12347999999974
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=193.18 Aligned_cols=454 Identities=18% Similarity=0.263 Sum_probs=249.4
Q ss_pred hhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-C
Q 000380 58 IARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG-F 131 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~-l 131 (1601)
.+.+||...+.+... =|.|+++++|.|||.+++..+..++.-. .--+..||++|...| ..|+++|.++++ +
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~--nIwGPFLVVtpaStL-~NWaqEisrFlP~~ 643 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETH--NIWGPFLVVTPASTL-HNWAQEISRFLPSF 643 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhc--cCCCceEEeehHHHH-hHHHHHHHHhCccc
Confidence 488999999988776 4889999999999999998875554322 122458999998777 779999999986 8
Q ss_pred cEEEEeCCCCcC------CchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 132 KVRTFCGGSKRL------KSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 132 ~v~~~~G~~~~~------~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
++.-|.|+..+. |.....-+...+.+|+|+|+|.+.. ...++.--.|.++|+|||+.+.......|..++.
T Consensus 644 k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--Deky~qkvKWQYMILDEAQAIKSSsS~RWKtLLs- 720 (1185)
T KOG0388|consen 644 KVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--DEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLS- 720 (1185)
T ss_pred eeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec--hHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhh-
Confidence 999999997642 2222222234567999999998763 2223444568899999999995322223433333
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEee-cCHHHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSV-EDAEDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~-~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
| ++.-.|.||+||+. +.+.+|+.+|+-..-+. ....++..|..+..+..-.......+ ..
T Consensus 721 F------~cRNRLLLTGTPIQ-----------NsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlne--qq 781 (1185)
T KOG0388|consen 721 F------KCRNRLLLTGTPIQ-----------NSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNE--QQ 781 (1185)
T ss_pred h------hccceeeecCCccc-----------hHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCH--HH
Confidence 3 34557889999954 56778888887654332 22334445444332211111000000 00
Q ss_pred hhhHHHHHHH-----HHHHHHHHHhhhhccc--------chh--hhhHHH------------HHHHHhh-----------
Q 000380 285 YVTCSEQLAE-----IKREQYISALSRKLHD--------HQS--LRNTTK------------QLNRLHD----------- 326 (1601)
Q Consensus 285 ~~~~~~~l~~-----i~~~~~~~~l~~~~~~--------~~~--~~~~~~------------~l~~~~~----------- 326 (1601)
...+..+|.. ++.+.. ..|..+..- ++. ++..+. ++++..+
T Consensus 782 L~RLH~ILKPFMLRRvKkdV~-sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~ 860 (1185)
T KOG0388|consen 782 LQRLHAILKPFMLRRVKKDVI-SELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPR 860 (1185)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-HHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCc
Confidence 1111111110 111100 111111100 000 000000 0000000
Q ss_pred --------------------------------hH---------HHHHHhhhhhHH-----HHHHHH--Hhc---Cch---
Q 000380 327 --------------------------------SM---------KFCLENLGVCGA-----LHASYI--LLS---GDE--- 352 (1601)
Q Consensus 327 --------------------------------~~---------~~~~~~lg~~~~-----~~~~~~--~l~---~~~--- 352 (1601)
.. .+..+.-|.... ...|.. .+. +..
T Consensus 861 s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~ 940 (1185)
T KOG0388|consen 861 SGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFR 940 (1185)
T ss_pred ceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccc
Confidence 00 000000000000 000000 000 000
Q ss_pred -hH------HHHHHHhhcCCCchHHHHHHHHHHHHHHHH--HhcC---------CCCCccchhhh------ccCC-----
Q 000380 353 -TM------RNELIEAEGNTIDDSLCRFASQASEVFAAI--CRRD---------GIASDLSCIEV------LKEP----- 403 (1601)
Q Consensus 353 -~~------~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~---------~~~~~~~~~~~------l~~~----- 403 (1601)
.+ ...+.+.. ......+.+.+......+... |-.. ....+++.+.. +...
T Consensus 941 n~e~~~Kavtr~ll~p~-~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Pp 1019 (1185)
T KOG0388|consen 941 NVEEAGKAVTRNLLNPE-SSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPP 1019 (1185)
T ss_pred cHHHHHHHHHHHhcCcc-cchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCc
Confidence 00 00000000 000001111111111111110 0000 01112221110 1111
Q ss_pred -----CCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHH
Q 000380 404 -----FFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILE 478 (1601)
Q Consensus 404 -----~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~ 478 (1601)
.-|.|+..|.++|...+ ..+.++|+|.+...+...+.++|.-.+.. ...+.| +....+|.+++.
T Consensus 1020 m~~FitdSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~-------ylRLDG---Ssk~~dRrd~vr 1088 (1185)
T KOG0388|consen 1020 MNTFITDSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYT-------YLRLDG---SSKASDRRDVVR 1088 (1185)
T ss_pred HHhhhccccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccc-------eEEecC---cchhhHHHHHHh
Confidence 02789999999998875 46899999999999999999998765431 334444 356778999999
Q ss_pred HHhcCC-ccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCHhHHHHHHHH
Q 000380 479 KFRSGE-LNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQRELDLIKNF 550 (1601)
Q Consensus 479 ~Fr~g~-~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~~~~~~i~~~ 550 (1601)
.|...+ .-+|++|.+++.|||+.+++.||.||..||+..-.|.+.|| |-||..-|. ++..+..++ +.+++.
T Consensus 1089 DwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE-k~l~rA 1164 (1185)
T KOG0388|consen 1089 DWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE-KVLERA 1164 (1185)
T ss_pred hccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHH-HHHHHh
Confidence 999866 56789999999999999999999999999999999999999 999998653 556665543 334443
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-17 Score=201.03 Aligned_cols=154 Identities=21% Similarity=0.297 Sum_probs=119.9
Q ss_pred hhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000380 58 IARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~ 132 (1601)
.+-+-|..+++.+.. ...++.+.||||||-+|+-+|..... .|+.+|||||-.+|..|..+.|+..+|.+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-----~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~ 272 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-----QGKQVLVLVPEIALTPQLLARFKARFGAK 272 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-----cCCEEEEEeccccchHHHHHHHHHHhCCC
Confidence 355778888887765 45799999999999999999865432 46889999999999999999999999999
Q ss_pred EEEEeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCC--hHHHHHHHHcCC
Q 000380 133 VRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH--PYAKIMKDFYKP 209 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~--~~~~i~~~~~~~ 209 (1601)
+.+++++.++..+...|.+.. ...+|+|+|-.-+ |..+.++++||+||-|.-..+... .|+..--..++.
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 999999999988899999887 4579999995422 677999999999999998654333 133211111122
Q ss_pred CCCCCCEEEEEeccc
Q 000380 210 DIMKVPRIFGMTASP 224 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP 224 (1601)
...+.|-||| ||||
T Consensus 346 ~~~~~pvvLg-SATP 359 (730)
T COG1198 346 KKENAPVVLG-SATP 359 (730)
T ss_pred HHhCCCEEEe-cCCC
Confidence 2235677777 9999
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-18 Score=187.24 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=94.6
Q ss_pred CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCC
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQT 502 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~ 502 (1601)
...++||||.++..++.|.+++.+.+. +++. .+.+|+ +..+.+|.+.++.|+.+++++||||+|+++||||..
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg-~~~s---cvclhg---DrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGG-KHYS---CVCLHG---DRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCC-ccce---eEEEec---CCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 345899999999999999999998764 2333 445666 477889999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhhc-CCCCCCeEEE-EEe
Q 000380 503 CCLVIRFDLPETVASFIQSRGR-ARMPQSEYAF-LVD 537 (1601)
Q Consensus 503 ~~~VI~fd~p~s~~~yiQr~GR-AR~g~s~~vi-lv~ 537 (1601)
+-.+|+..+|.....|+||+|| +|+.+.|.+| ++.
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhcceeEEEee
Confidence 9999999999999999999999 5998889888 554
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=178.87 Aligned_cols=391 Identities=16% Similarity=0.200 Sum_probs=219.3
Q ss_pred hhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC--CcEE
Q 000380 59 ARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~--l~v~ 134 (1601)
+-|||.+.+..+++ ..+++++++|.|||++|+.....+ +. .-..||+||. .|-..|++.+.++++ ..+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yy----ra--EwplliVcPA-svrftWa~al~r~lps~~pi~ 271 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYY----RA--EWPLLIVCPA-SVRFTWAKALNRFLPSIHPIF 271 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHH----hh--cCcEEEEecH-HHhHHHHHHHHHhcccccceE
Confidence 56999999999999 679999999999999998776332 11 2348999997 666889999999987 3556
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCC
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKV 214 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (1601)
++.++.+.....-.| ..|.|.+++.+..+ +..+.-..+.+||+||+|++.+.+...-..++... ...
T Consensus 272 vv~~~~D~~~~~~t~------~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dll-----k~a 338 (689)
T KOG1000|consen 272 VVDKSSDPLPDVCTS------NTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLL-----KVA 338 (689)
T ss_pred EEecccCCccccccC------CeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchhhhhhhhhHH-----HHh
Confidence 666665543333334 45999999988642 22334456899999999999532222222233222 235
Q ss_pred CEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCHHHHhcccCCCeE--EEEEecCCCCCCCchhhhHHHHH
Q 000380 215 PRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVV--RVYQYGPVINDTSSSYVTCSEQL 292 (1601)
Q Consensus 215 p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~l 292 (1601)
.++|.||+||...... .+...|..+..++.... .+...-.++... ..+.|.--. ....+.-.+
T Consensus 339 khvILLSGTPavSRP~----elytqi~avd~tlfp~f------~efa~rYCd~k~vr~~~Dykg~t-----nl~EL~~lL 403 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPS----ELYTQIRAVDHTLFPNF------HEFAIRYCDGKQVRFCFDYKGCT-----NLEELAALL 403 (689)
T ss_pred hheEEecCCcccCCch----hhhhhhhhhcccccccH------HHHHHHhcCccccceeeecCCCC-----CHHHHHHHH
Confidence 7899999999654422 23333333332222211 111111111111 112222110 001111111
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHh-cC-chhHHHHHHHhhcC-CCchH
Q 000380 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILL-SG-DETMRNELIEAEGN-TIDDS 369 (1601)
Q Consensus 293 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l-~~-~~~~~~~l~~~~~~-~~~~~ 369 (1601)
. .. -+++++..+++ .+|-+- +...+.+ .+ .......++..... +....
T Consensus 404 ~----k~-------------------lMIRRlK~dvL---~qLPpK---rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~ 454 (689)
T KOG1000|consen 404 F----KR-------------------LMIRRLKADVL---KQLPPK---RREVVYVSGGRIDARMDDLVKAAADYTKVNS 454 (689)
T ss_pred H----HH-------------------HHHHHHHHHHH---hhCCcc---ceEEEEEcCCccchHHHHHHHHhhhcchhhh
Confidence 1 10 01111111111 000000 0000000 00 00000000100000 00000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhh---cccCCCceEEEEecchhhHHHHHHHHHh
Q 000380 370 LCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILST---FRLQQHMKCIVFVNRIVTARALSYILQN 446 (1601)
Q Consensus 370 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~---~~~~~~~k~IIFv~~r~~a~~L~~~L~~ 446 (1601)
.++--......+.. ..-.|+....+.|.. +...++.|.+||+......+.|...+.+
T Consensus 455 ~e~~~~~l~l~y~~--------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~ 514 (689)
T KOG1000|consen 455 MERKHESLLLFYSL--------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK 514 (689)
T ss_pred hhhhhHHHHHHHHH--------------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH
Confidence 00000000000000 002355555655544 2245678999999999999999999987
Q ss_pred cccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC-ccE-EEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhc
Q 000380 447 LKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE-LNL-LVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524 (1601)
Q Consensus 447 ~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~-~~v-LVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GR 524 (1601)
.+.. .+.+.| ..+..+|....+.|...+ +.| +++-.+++.|+++.+.++||...++||+.-.+|.-.|
T Consensus 515 r~vg-------~IRIDG---st~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 515 RKVG-------SIRIDG---STPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDR 584 (689)
T ss_pred cCCC-------eEEecC---CCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhh
Confidence 6431 344555 477788999999998755 554 5567889999999999999999999999999999999
Q ss_pred C-CCCCCeEE---EEEeCCCHhH
Q 000380 525 A-RMPQSEYA---FLVDSGNQRE 543 (1601)
Q Consensus 525 A-R~g~s~~v---ilv~~~~~~~ 543 (1601)
| |.||..-| +++..+..++
T Consensus 585 aHRiGQkssV~v~ylvAKgT~Dd 607 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAKGTADD 607 (689)
T ss_pred hhhccccceeeEEEEEecCchHH
Confidence 9 99987533 4777766554
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=185.83 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=123.3
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK--PQKSICIFLAPTVALVQQQAKVIEESI---GF 131 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~--~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~l 131 (1601)
.|++||.++++.+.+ +|+++++|||+|||+++++++.. .+... ..+.+++|++|+++|+.|+.+.++.+. ++
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~--~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~ 98 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILE--KLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNL 98 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHH--HHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCc
Confidence 489999999999998 99999999999999999888844 33333 356789999999999999999888764 57
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCC
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~ 211 (1601)
++..++|+.........+. .+++|+|+||+.+.+.+.+....+.+++++|+||||++.+ ..+...+..+....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~---~~~~~~~~~~~~~l- 171 (203)
T cd00268 99 KVVVIYGGTSIDKQIRKLK---RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD---MGFEDQIREILKLL- 171 (203)
T ss_pred eEEEEECCCCHHHHHHHhc---CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc---cChHHHHHHHHHhC-
Confidence 8888988876433222222 3689999999999999988888889999999999999853 22333333322211
Q ss_pred CCCCEEEEEecccc
Q 000380 212 MKVPRIFGMTASPV 225 (1601)
Q Consensus 212 ~~~p~ilgLTATP~ 225 (1601)
....+++++|||+.
T Consensus 172 ~~~~~~~~~SAT~~ 185 (203)
T cd00268 172 PKDRQTLLFSATMP 185 (203)
T ss_pred CcccEEEEEeccCC
Confidence 13578999999984
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-18 Score=180.78 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC---CcEEEE
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG---FKVRTF 136 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~---l~v~~~ 136 (1601)
++|.++++.+.+ +|+++.+|||+|||+++..++.. .+.+. ...++++++|+++|+.|+.+.+..++. +++..+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~--~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALN--RLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHH--HHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHh--hhccC-CCceEEEEeecccccccccccccccccccccccccc
Confidence 799999999997 89999999999999999998843 33333 445899999999999999999998864 589999
Q ss_pred eCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccC-CChHHHHHHHHcCCCCCCCC
Q 000380 137 CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKS-NHPYAKIMKDFYKPDIMKVP 215 (1601)
Q Consensus 137 ~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~~~i~~~~~~~~~~~~p 215 (1601)
+|+.........|. ..+++|+|+||+.|.+.+......+.++++|||||+|++..+. ...+..++..+... ...
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~---~~~ 153 (169)
T PF00270_consen 79 HGGQSISEDQREVL--SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF---KNI 153 (169)
T ss_dssp STTSCHHHHHHHHH--HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT---TTS
T ss_pred cccccccccccccc--cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC---CCC
Confidence 88876332222222 2359999999999999998866677889999999999996431 11244455553221 247
Q ss_pred EEEEEecccc
Q 000380 216 RIFGMTASPV 225 (1601)
Q Consensus 216 ~ilgLTATP~ 225 (1601)
++++|||||.
T Consensus 154 ~~i~~SAT~~ 163 (169)
T PF00270_consen 154 QIILLSATLP 163 (169)
T ss_dssp EEEEEESSST
T ss_pred cEEEEeeCCC
Confidence 8999999993
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=177.48 Aligned_cols=142 Identities=24% Similarity=0.229 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHhhcc-cCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhc
Q 000380 404 FFSKKLLRLIGILSTFR-LQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRS 482 (1601)
Q Consensus 404 ~~s~K~~~L~~lL~~~~-~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~ 482 (1601)
..|.|+++|.+-|...+ .....+.|||.+...+.+.+...|.+.|. .| +-+.| +|++..|..+++.|.+
T Consensus 617 qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGf----sc---VkL~G---sMs~~ardatik~F~n 686 (791)
T KOG1002|consen 617 QSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGF----SC---VKLVG---SMSPAARDATIKYFKN 686 (791)
T ss_pred cchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCc----eE---EEecc---CCChHHHHHHHHHhcc
Confidence 35889999988776443 23456899999999999999999987654 33 33344 5999999999999998
Q ss_pred CC-cc-EEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEE--EEEeCCCHhHHHHHHHHHHhHH
Q 000380 483 GE-LN-LLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYA--FLVDSGNQRELDLIKNFSKEED 555 (1601)
Q Consensus 483 g~-~~-vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~v--ilv~~~~~~~~~~i~~~~~~e~ 555 (1601)
.- +. +||+-.+++..+|+..+..|+.+|+.||+..-.|...|. |.||-+-+ +-+.-++..+.+.++-..+.+.
T Consensus 687 d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~ 764 (791)
T KOG1002|consen 687 DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKAN 764 (791)
T ss_pred CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhh
Confidence 64 55 577889999999999999999999999999999999997 99987643 3233334444444444434443
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=193.44 Aligned_cols=147 Identities=25% Similarity=0.253 Sum_probs=115.2
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRT 135 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~ 135 (1601)
+.+-++|.+++..+-+ +.++|.+.|.+|||.+|-.+|..- ++ .+.||++-.|-++|-+|-++++..-++ .|+.
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s---Lr--~kQRVIYTSPIKALSNQKYREl~~EF~-DVGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS---LR--EKQRVIYTSPIKALSNQKYRELLEEFK-DVGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH---HH--hcCeEEeeChhhhhcchhHHHHHHHhc-ccce
Confidence 3567899999988877 899999999999999998887431 22 356899999999999999999987654 6899
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCCh-HHHHHHHHcCCCCCCC
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDIMKV 214 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~~~i~~~~~~~~~~~~ 214 (1601)
.+|+.....+ +.-+|||.++|.+++-++.--+..+.+|||||.|-+.++.... |..-+- . ..+.
T Consensus 202 MTGDVTInP~----------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETII----l-lP~~ 266 (1041)
T KOG0948|consen 202 MTGDVTINPD----------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETII----L-LPDN 266 (1041)
T ss_pred eecceeeCCC----------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEE----e-cccc
Confidence 9999775443 6789999999999999998789999999999999996543221 111110 0 1245
Q ss_pred CEEEEEeccc
Q 000380 215 PRIFGMTASP 224 (1601)
Q Consensus 215 p~ilgLTATP 224 (1601)
-|.+.||||.
T Consensus 267 vr~VFLSATi 276 (1041)
T KOG0948|consen 267 VRFVFLSATI 276 (1041)
T ss_pred ceEEEEeccC
Confidence 6788899996
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=199.27 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=93.2
Q ss_pred hhHHHHHHHHH-HhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCcEE
Q 000380 59 ARKYQLELCKK-AMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFKVR 134 (1601)
Q Consensus 59 ~R~yQ~e~~~~-~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~v~ 134 (1601)
.|+|=.+++-. ++.+.-|+.++||+|||++|.+|+. ...+ .++.++|++||..||.|.++.+..+ +|++++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~--~~al---~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~ 155 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAY--LNAI---SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVG 155 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHH--HHHh---cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 34444444432 3446779999999999999999984 2333 2456999999999999988777664 589999
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHH-HHHHhcc-ccCc-----cceeEEEEecCcccc
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQIL-LYCLYHR-FIKM-----ELIALLIFDECHHAQ 192 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l-~~~l~~~-~~~l-----~~i~llI~DEaH~~~ 192 (1601)
.++|+.+...+... ..++|+++||+.| .+.|... .+.+ ..+.++|+||||.++
T Consensus 156 ~i~gg~~~~~r~~~-----y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 156 VIYPDMSHKEKQEA-----YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEeCCCCHHHHHHH-----hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 99999765433222 2589999999999 8888776 2334 589999999999995
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=198.58 Aligned_cols=119 Identities=19% Similarity=0.155 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|...+.+.+.... ..+.++||||+++..++.|+..|.+.+.. ...+|+ ++..+++..+.++++.|.
T Consensus 423 ~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~~gi~-------~~~Lna---~~~~~Ea~ii~~ag~~g~- 490 (796)
T PRK12906 423 DSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDEAGIP-------HAVLNA---KNHAKEAEIIMNAGQRGA- 490 (796)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHCCCC-------eeEecC---CcHHHHHHHHHhcCCCce-
Confidence 458888888886542 46789999999999999999999987542 223455 356666666666666665
Q ss_pred cEEEEecccccCccCC---Ccc-----EEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEEe
Q 000380 486 NLLVATKVGEEGLDIQ---TCC-----LVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVD 537 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip---~~~-----~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~ 537 (1601)
|+|||+++++|+||+ ++. +||+++.|.|.+.|.|++||+ |.|..|.+.++-
T Consensus 491 -VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~ 550 (796)
T PRK12906 491 -VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 550 (796)
T ss_pred -EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEE
Confidence 999999999999994 888 999999999999999999995 999999887543
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=192.84 Aligned_cols=176 Identities=21% Similarity=0.258 Sum_probs=123.3
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc----CC
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI----GF 131 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~----~l 131 (1601)
+.|-.||.+.+...-+ +..+|++||.+|||++....| ...++....+.+++++||.+|+.|....+...+ -.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i---EKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI---EKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH---HHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 5588999999997766 789999999999999887775 334555667899999999999999777665543 23
Q ss_pred cEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc---ccCccceeEEEEecCcccccc-CCChHHHHHHHHc
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR---FIKMELIALLIFDECHHAQVK-SNHPYAKIMKDFY 207 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~---~~~l~~i~llI~DEaH~~~~~-~~~~~~~i~~~~~ 207 (1601)
+...+.|......+...|+ |+|+|+-|+.+-.+|... ....++++++||||+|.++.. ..+.+.+++...
T Consensus 587 rg~sl~g~ltqEYsinp~n-----CQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWN-----CQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred cchhhHhhhhHHhcCCchh-----ceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 4455667766555555564 999999999999888763 334678999999999999533 223344444332
Q ss_pred CCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe
Q 000380 208 KPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS 253 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~ 253 (1601)
+ -.+|+||||..+-. .+.+-+.++++-.+..+.-
T Consensus 661 -----~-CP~L~LSATigN~~------l~qkWlnq~~R~~sr~~el 694 (1330)
T KOG0949|consen 661 -----P-CPFLVLSATIGNPN------LFQKWLNQRGRAMSRNAEL 694 (1330)
T ss_pred -----C-CCeeEEecccCCHH------HHHHHHHHHHhhcCCCeee
Confidence 2 23789999985432 2333444455555544433
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=193.23 Aligned_cols=341 Identities=20% Similarity=0.273 Sum_probs=212.0
Q ss_pred chhhhhHHHHHHH--HHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---
Q 000380 55 PKQIARKYQLELC--KKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES--- 128 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~--~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~--- 128 (1601)
+.....+||.+.+ .+.+. +|.|..+||+.|||++|-++++. +.+. .++.++++.|.++.+..-...+..+
T Consensus 220 gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~--~~l~--~rr~~llilp~vsiv~Ek~~~l~~~~~~ 295 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLR--EVLC--RRRNVLLILPYVSIVQEKISALSPFSID 295 (1008)
T ss_pred hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHH--HHHH--HhhceeEecceeehhHHHHhhhhhhccc
Confidence 3344778999987 44445 89999999999999999998843 2222 2467999999999988877777665
Q ss_pred cCCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc--ccCccceeEEEEecCccccccCCChH-HHHHHH
Q 000380 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR--FIKMELIALLIFDECHHAQVKSNHPY-AKIMKD 205 (1601)
Q Consensus 129 ~~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~-~~i~~~ 205 (1601)
+|++|..|.|....... ++.-.|.|||-++-..+++.- .-+++.+++||+||-|.+++++...- ..++..
T Consensus 296 ~G~~ve~y~g~~~p~~~-------~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k 368 (1008)
T KOG0950|consen 296 LGFPVEEYAGRFPPEKR-------RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAK 368 (1008)
T ss_pred cCCcchhhcccCCCCCc-------ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHH
Confidence 37899999987664332 123679999999877555432 12467789999999999986655432 233333
Q ss_pred HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEeecCH-HHHhcccCCCeEEEEEecCCCCCCCch
Q 000380 206 FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDA-EDLESFVSSPVVRVYQYGPVINDTSSS 284 (1601)
Q Consensus 206 ~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~~~~~-~~l~~~~~~p~~~~~~~~~~~~~~~~~ 284 (1601)
+.-......-+|+|||||.. ++..|+..+++.+|+...+ ..+.+++ ...+...+..
T Consensus 369 ~~y~~~~~~~~iIGMSATi~-------------N~~lL~~~L~A~~y~t~fRPv~L~E~i--------k~G~~i~~~~-- 425 (1008)
T KOG0950|consen 369 ILYENLETSVQIIGMSATIP-------------NNSLLQDWLDAFVYTTRFRPVPLKEYI--------KPGSLIYESS-- 425 (1008)
T ss_pred HHHhccccceeEeeeecccC-------------ChHHHHHHhhhhheecccCcccchhcc--------CCCcccccch--
Confidence 32222223378999999973 4567888888877764321 1111111 0000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcC
Q 000380 285 YVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGN 364 (1601)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 364 (1601)
..+.++.+..- .....+.
T Consensus 426 --------------------------------r~~~lr~ia~l------------------------------~~~~~g~ 443 (1008)
T KOG0950|consen 426 --------------------------------RNKVLREIANL------------------------------YSSNLGD 443 (1008)
T ss_pred --------------------------------hhHHHHHhhhh------------------------------hhhhccc
Confidence 00000000000 0000000
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHH
Q 000380 365 TIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYIL 444 (1601)
Q Consensus 365 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L 444 (1601)
..+ +.+..+..+. ..++.++||||++|..++.++..+
T Consensus 444 ~dp------------------------------------------D~~v~L~tet-~~e~~~~lvfc~sk~~ce~~a~~~ 480 (1008)
T KOG0950|consen 444 EDP------------------------------------------DHLVGLCTET-APEGSSVLVFCPSKKNCENVASLI 480 (1008)
T ss_pred CCC------------------------------------------cceeeehhhh-hhcCCeEEEEcCcccchHHHHHHH
Confidence 000 0011111111 124568999999999888777554
Q ss_pred Hhccc--------cc----------------c------cccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEeccc
Q 000380 445 QNLKF--------LA----------------S------WRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVG 494 (1601)
Q Consensus 445 ~~~~~--------~~----------------~------~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vl 494 (1601)
...-. .. . ....+.+.+|+. +++.++|+.+...||.|.+.|++||+.+
T Consensus 481 ~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHha--GLT~eER~~iE~afr~g~i~vl~aTSTl 558 (1008)
T KOG0950|consen 481 AKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHA--GLTSEEREIIEAAFREGNIFVLVATSTL 558 (1008)
T ss_pred HHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceeccc--ccccchHHHHHHHHHhcCeEEEEecchh
Confidence 32200 00 0 011122344543 5899999999999999999999999999
Q ss_pred ccCccCCCccEEEEcCCC----CCHHHHHHHhhcC-CCCCC--eEEEEE
Q 000380 495 EEGLDIQTCCLVIRFDLP----ETVASFIQSRGRA-RMPQS--EYAFLV 536 (1601)
Q Consensus 495 eeGIDip~~~~VI~fd~p----~s~~~yiQr~GRA-R~g~s--~~vilv 536 (1601)
..|+++|+-.++|++-.- .+...|.|++||| |+|-. |-.+++
T Consensus 559 aaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI 607 (1008)
T KOG0950|consen 559 AAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILI 607 (1008)
T ss_pred hccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEE
Confidence 999999999999976442 4668999999997 88754 555544
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-16 Score=195.11 Aligned_cols=118 Identities=18% Similarity=0.109 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|...+.+.+.+.. ..+.++||||+++..++.|++.|...+.. ...+|+ .+.+|+..+.+|+.+..
T Consensus 413 ~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~-------~~vLna-----kq~eREa~Iia~Ag~~g 479 (830)
T PRK12904 413 KEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIP-------HNVLNA-----KNHEREAEIIAQAGRPG 479 (830)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCc-------eEeccC-----chHHHHHHHHHhcCCCc
Confidence 468888888886532 45779999999999999999999986542 223444 36788999999999999
Q ss_pred cEEEEecccccCccCCCc--------------------------------------cEEEEcCCCCCHHHHHHHhhcC-C
Q 000380 486 NLLVATKVGEEGLDIQTC--------------------------------------CLVIRFDLPETVASFIQSRGRA-R 526 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip~~--------------------------------------~~VI~fd~p~s~~~yiQr~GRA-R 526 (1601)
.|+|||+++++|+||+-- =+||--..+.|.+---|-+||| |
T Consensus 480 ~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR 559 (830)
T PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc
Confidence 999999999999999753 1688888999999999999995 9
Q ss_pred CCCCeEEEEE
Q 000380 527 MPQSEYAFLV 536 (1601)
Q Consensus 527 ~g~s~~vilv 536 (1601)
.|+.|..-|+
T Consensus 560 QGdpGss~f~ 569 (830)
T PRK12904 560 QGDPGSSRFY 569 (830)
T ss_pred CCCCCceeEE
Confidence 9999987643
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=198.90 Aligned_cols=161 Identities=21% Similarity=0.267 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI-- 129 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-- 129 (1601)
..||+||+++++++++ ...=+.|.+|+|||+.++-..-.+. ..++|||||+.+|..|..++.....
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-------~~~iL~LvPSIsLLsQTlrew~~~~~l 232 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-------AARILFLVPSISLLSQTLREWTAQKEL 232 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-------hhheEeecchHHHHHHHHHHHhhccCc
Confidence 4599999999999988 3467778899999999987764433 3679999999999999888876643
Q ss_pred CCcEEEEeCCCCcCCc----------------h----hhHHhh--hccCeEEEEcHHHHHHHHhccccCccceeEEEEec
Q 000380 130 GFKVRTFCGGSKRLKS----------------H----CDWEKE--IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187 (1601)
Q Consensus 130 ~l~v~~~~G~~~~~~~----------------~----~~~~~~--~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DE 187 (1601)
+++...+|++...... . ..|... ..+--|+++|+|.+...-.....-+..++|||.||
T Consensus 233 ~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDE 312 (1518)
T COG4889 233 DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDE 312 (1518)
T ss_pred cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecc
Confidence 5677777777542211 0 122211 12346999999999876655556678999999999
Q ss_pred CccccccCCChHHHHHHHHcCCCC---CCCCEEEEEeccccC
Q 000380 188 CHHAQVKSNHPYAKIMKDFYKPDI---MKVPRIFGMTASPVV 226 (1601)
Q Consensus 188 aH~~~~~~~~~~~~i~~~~~~~~~---~~~p~ilgLTATP~~ 226 (1601)
||+.. |.+.-..--..|.+... -+..+.|-|||||..
T Consensus 313 AHRTt--Ga~~a~dd~saFt~vHs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 313 AHRTT--GATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred hhccc--cceecccCcccceeecCcchhHHHHhhhcccCchh
Confidence 99985 32211111112222111 123567889999953
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=177.68 Aligned_cols=448 Identities=18% Similarity=0.183 Sum_probs=236.1
Q ss_pred hhhhhHHHHHHHHHHhc------cCEEEEecCchhHHHHHHHHHHHH--HHHhcC---CCCcEEEEEeCChhHHHHHHHH
Q 000380 56 KQIARKYQLELCKKAME------ENIIVYLGTGCGKTHIAVLLIYEL--AHLIRK---PQKSICIFLAPTVALVQQQAKV 124 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~------~n~Iv~~~TGsGKTlia~l~i~~l--~~~~~~---~~~~~vl~LvPt~~Lv~Q~~~~ 124 (1601)
...+-++|..++.+... ...|+++++|.|||++-+.+|..- .+..+. +....+|||||. .|+.||..+
T Consensus 323 ~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~E 401 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAE 401 (901)
T ss_pred eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHH
Confidence 34577999999987766 457999999999999777776431 111111 112359999995 899999999
Q ss_pred HHHHcC---CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHH----HHhcc----ccCccceeEEEEecCccccc
Q 000380 125 IEESIG---FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLY----CLYHR----FIKMELIALLIFDECHHAQV 193 (1601)
Q Consensus 125 l~~~~~---l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~----~l~~~----~~~l~~i~llI~DEaH~~~~ 193 (1601)
+.+.+. ++|..|+|........ +.+..+||||+||..+.+ -+..+ .+.--.|.-||+||||.+.+
T Consensus 402 v~~rl~~n~LsV~~~HG~n~r~i~~----~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNKREISA----KELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHHHhhcceEEEEecCCccccCCH----HHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 988763 7899999987533333 334569999999998765 11111 11122367899999999953
Q ss_pred cCCChHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccCeEEe---------------ecCH-
Q 000380 194 KSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS---------------VEDA- 257 (1601)
Q Consensus 194 ~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~~~~~---------------~~~~- 257 (1601)
.. ..-...+..+ ......+|||||+.++.. .+..|-..+.+..+. ..++
T Consensus 478 ~~-tq~S~AVC~L------~a~~RWclTGTPiqNn~~--------DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rl 542 (901)
T KOG4439|consen 478 SN-TQCSKAVCKL------SAKSRWCLTGTPIQNNLW--------DVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRL 542 (901)
T ss_pred cc-hhHHHHHHHH------hhcceeecccCccccchh--------HHHHHHHHhcCCCcchHHHHHHhccCccccchhhh
Confidence 22 2222222222 123468999999988754 233333333322211 0000
Q ss_pred -------------HHHhc---ccCCCe--EEEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcc-----cchh-
Q 000380 258 -------------EDLES---FVSSPV--VRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLH-----DHQS- 313 (1601)
Q Consensus 258 -------------~~l~~---~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~-----~~~~- 313 (1601)
..+.. .+..|. +++.... +.......++++.+..+.....-|.+.-. ..+.
T Consensus 543 nll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~le-----Ls~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~ 617 (901)
T KOG4439|consen 543 NLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELE-----LSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSR 617 (901)
T ss_pred hhhhhhHHhhhhHHhhccccccccCcccceEEEEEe-----ecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcccc
Confidence 00000 111221 1111111 11222334444444433322111111000 0000
Q ss_pred ---------hhhHH----HH-----HHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchH-HH-HH
Q 000380 314 ---------LRNTT----KQ-----LNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDS-LC-RF 373 (1601)
Q Consensus 314 ---------~~~~~----~~-----l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~-~~ 373 (1601)
..+.. ++ -......++..+-.|...|. +..+......-.......+...+.. .. .-
T Consensus 618 ~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~cc----H~~~~k~~ld~~~~~~~g~~~sde~~~e~~~ 693 (901)
T KOG4439|consen 618 NRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACC----HFGLLKAALDPEEFQMNGGDDSDEEQLEEDN 693 (901)
T ss_pred chhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhc----CcchhccccCHHHhhhcCcchhhhhhhhhhH
Confidence 00000 00 00001111111111111111 0000000000000000111111111 00 11
Q ss_pred HHHHHHHHHHHHhcCCCC--CccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccccc
Q 000380 374 ASQASEVFAAICRRDGIA--SDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLA 451 (1601)
Q Consensus 374 l~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~ 451 (1601)
+.+........+..++.. .....-+.+.....|-|+...+++++........+++|..+-......+...|+..+..
T Consensus 694 l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~- 772 (901)
T KOG4439|consen 694 LAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHI- 772 (901)
T ss_pred HHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCee-
Confidence 111111111111111110 00111122333445889999999988764456678888877766667777777765431
Q ss_pred ccccceEEeccCCCCcCCHHHHHHHHHHHhc--CCcc-EEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CC
Q 000380 452 SWRCHFLVGVNAGLKSMSRNAMKSILEKFRS--GELN-LLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527 (1601)
Q Consensus 452 ~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~--g~~~-vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~ 527 (1601)
...+++ +...++|+++++.|.. |..+ .|++-.+++.|+|+-..|++|..|+-||+.--.|...|. |+
T Consensus 773 ------y~si~G---qv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 773 ------YTSITG---QVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred ------eeeecC---ccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 333444 5889999999999964 4344 566779999999999999999999999999999999996 99
Q ss_pred CCCeEEE---EEeCCCHh
Q 000380 528 PQSEYAF---LVDSGNQR 542 (1601)
Q Consensus 528 g~s~~vi---lv~~~~~~ 542 (1601)
||.+.|+ ++..+..+
T Consensus 844 GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred cccCceEEEEEEecCcHH
Confidence 9998665 55555543
|
|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-17 Score=163.69 Aligned_cols=115 Identities=37% Similarity=0.652 Sum_probs=100.6
Q ss_pred CCCCCccccCCCCCcccccCcEEEeccCCeEEEEEeecCCCCCCCCCCCC---CCCChhhhhhhhcCccccCCCCCeEEe
Q 000380 860 PSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDS---DSSSHVDHLISSYGIHLKHPKQPLLRA 936 (1601)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~vV~~~~~~~~y~v~~i~~d~~p~s~~~~~---~~~t~~~y~~~~y~~~l~~~~QPll~~ 936 (1601)
+..+.++++++.+..+++.|.+|+++|++++|.|++|. +++|.|+|+.. .+.||.+||+++||+.+.+++||||++
T Consensus 14 ~~~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~ 92 (135)
T cd02844 14 EASDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKG 92 (135)
T ss_pred CccceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEE
Confidence 34567899999999999999999999999999999999 99999999754 347999999999999999999999999
Q ss_pred eecccccccccCCccCCcc--cccccccccccccccccccc
Q 000380 937 KPLFRLRNLLHNRKLEDSE--SHELEEYFDDLPPELCQLKI 975 (1601)
Q Consensus 937 ~~~~~~~nlL~~~~~~~~~--~~~~~~~~~~L~PElc~~~~ 975 (1601)
+.+++++|||+++...... .....+.+++||||||.+++
T Consensus 93 ~~~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 93 KQIFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ecccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 9999999999998764322 23566778999999999754
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=187.89 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|..++++-+... ...+.++||||+++..++.|+.+|...+.. ...+|+ .++..++..+.+.|+.|.
T Consensus 432 ~~K~~Aii~ei~~~-~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-------~~vLna---k~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 432 DEKYQAIIKDIKDC-RERGQPVLVGTVSIEQSELLARLMVKEKIP-------HEVLNA---KFHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-------eEeccC---cccHHHHHHHHhCCCCCc-
Confidence 56777777766654 356889999999999999999999986542 223455 478899999999999998
Q ss_pred cEEEEecccccCccCCCc-------------------------------------cEEEEcCCCCCHHHHHHHhhcC-CC
Q 000380 486 NLLVATKVGEEGLDIQTC-------------------------------------CLVIRFDLPETVASFIQSRGRA-RM 527 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip~~-------------------------------------~~VI~fd~p~s~~~yiQr~GRA-R~ 527 (1601)
|+|||+++++|+||.=- =+||--..+.|.+---|-+||| |.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 99999999999999621 2688888999999999999995 99
Q ss_pred CCCeEEEE
Q 000380 528 PQSEYAFL 535 (1601)
Q Consensus 528 g~s~~vil 535 (1601)
|..|..-|
T Consensus 579 GDPGss~f 586 (908)
T PRK13107 579 GDAGSSRF 586 (908)
T ss_pred CCCCceeE
Confidence 99987753
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-14 Score=176.27 Aligned_cols=132 Identities=21% Similarity=0.256 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC
Q 000380 405 FSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE 484 (1601)
Q Consensus 405 ~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~ 484 (1601)
+..++..|.+.+..+. ..+.++||||+++..++.|++.|...+.. +..+|+ +++..+|.++++.|+.|+
T Consensus 424 ~~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-------~~~lh~---~~~~~eR~~~l~~fr~G~ 492 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKELGIK-------VRYLHS---EIDTLERVEIIRDLRLGE 492 (655)
T ss_pred ccchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhhccc-------eeeeeC---CCCHHHHHHHHHHHhcCC
Confidence 3556677777776653 45789999999999999999999986531 344566 489999999999999999
Q ss_pred ccEEEEecccccCccCCCccEEEEcC-----CCCCHHHHHHHhhcC-CCCCCeEEEEE-eCCCHhHHHHHH
Q 000380 485 LNLLVATKVGEEGLDIQTCCLVIRFD-----LPETVASFIQSRGRA-RMPQSEYAFLV-DSGNQRELDLIK 548 (1601)
Q Consensus 485 ~~vLVaT~vleeGIDip~~~~VI~fd-----~p~s~~~yiQr~GRA-R~g~s~~vilv-~~~~~~~~~~i~ 548 (1601)
+.|||||+++++|+|+|++++||++| .|.+..+|+||+||| |. ..|.++++ +..+......+.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 99999999999999999999999998 799999999999996 87 56777755 444444444333
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-14 Score=192.73 Aligned_cols=436 Identities=18% Similarity=0.189 Sum_probs=241.1
Q ss_pred hhhhhHHHHHHHHHHh---c---cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 56 KQIARKYQLELCKKAM---E---ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l---~---~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
...+|+||.+.+.+.. . .+.|+++++|.|||+.++..+......... ..+.++++||+ +++.+|.+++.++.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~-~~~~~liv~p~-s~~~nw~~e~~k~~ 413 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV-YLGPALIVVPA-SLLSNWKREFEKFA 413 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC-CCCCeEEEecH-HHHHHHHHHHhhhC
Confidence 3568999999998866 2 678999999999999999887542221111 13579999997 78899999998887
Q ss_pred C-Cc-EEEEeCCCCc-CCchhhHHhhhcc-----CeEEEEcHHHHHHHH-hccccCccceeEEEEecCccccccCCChHH
Q 000380 130 G-FK-VRTFCGGSKR-LKSHCDWEKEIDQ-----YEVLVMIPQILLYCL-YHRFIKMELIALLIFDECHHAQVKSNHPYA 200 (1601)
Q Consensus 130 ~-l~-v~~~~G~~~~-~~~~~~~~~~~~~-----~~VlV~Tp~~l~~~l-~~~~~~l~~i~llI~DEaH~~~~~~~~~~~ 200 (1601)
+ ++ +..++|.... ..........+.. .+|+++|++.+...+ .+..+.-..++.+|+||+|.+.+.....+.
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~ 493 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGK 493 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHH
Confidence 4 66 7888887652 1112222222222 799999999988632 334556677899999999998533222233
Q ss_pred HHHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccC-eEEeec--CHHHHhcccCCCeEEEEEecCC
Q 000380 201 KIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA-KVYSVE--DAEDLESFVSSPVVRVYQYGPV 277 (1601)
Q Consensus 201 ~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~-~~~~~~--~~~~l~~~~~~p~~~~~~~~~~ 277 (1601)
.+. .+ .....+.||+|| +++.+.+|.++++. ..-..- ....+..+...|........+.
T Consensus 494 ~l~-~~------~~~~~~~LtgTP-----------len~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~ 555 (866)
T COG0553 494 ALQ-FL------KALNRLDLTGTP-----------LENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPL 555 (866)
T ss_pred HHH-HH------hhcceeeCCCCh-----------HhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccch
Confidence 333 33 234559999999 45677788777772 221111 2244555555553332222110
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHH-HHhhhh-hHHHHHHHHHhcCchhHH
Q 000380 278 INDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFC-LENLGV-CGALHASYILLSGDETMR 355 (1601)
Q Consensus 278 ~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~lg~-~~~~~~~~~~l~~~~~~~ 355 (1601)
........ .+..+............ . ..++.+....... ...+.. -............. .
T Consensus 556 ----~~~~~~~~-~l~~~i~~f~lrr~k~~---~-------~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~---~ 617 (866)
T COG0553 556 ----EARELGIE-LLRKLLSPFILRRTKED---V-------EVLKELPPKIEKVLECELSEEQRELYEALLEGAEK---N 617 (866)
T ss_pred ----hhHHHHHH-HHHHHHHHHhhcccccc---h-------hHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHH---H
Confidence 00000000 01111111110000000 0 0000110000000 000000 00000000000000 0
Q ss_pred HHHHHhh-cCCCc---h--HHHHHHHHHHHHHHHHHhcCCCCCcc-chhh--------------hc--cCCCCC-HHHHH
Q 000380 356 NELIEAE-GNTID---D--SLCRFASQASEVFAAICRRDGIASDL-SCIE--------------VL--KEPFFS-KKLLR 411 (1601)
Q Consensus 356 ~~l~~~~-~~~~~---~--~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~--------------~l--~~~~~s-~K~~~ 411 (1601)
...+... ..... . .....+ .....+...|.......+- .... .. .....+ .|...
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~ 696 (866)
T COG0553 618 QQLLEDLEKADSDENRIGDSELNIL-ALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQA 696 (866)
T ss_pred HHHHHHHHhhccccccccchhhHHH-HHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHH
Confidence 0000000 00000 0 000000 0111111222211111000 0000 00 001124 79999
Q ss_pred HHHHH-hhcccCCCc--eEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcC--Ccc
Q 000380 412 LIGIL-STFRLQQHM--KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG--ELN 486 (1601)
Q Consensus 412 L~~lL-~~~~~~~~~--k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g--~~~ 486 (1601)
+.++| .... ..+. ++|||++...+...+...+...+. ..+.++| +++.+.|...+++|.++ ..-
T Consensus 697 l~~ll~~~~~-~~~~~~kvlifsq~t~~l~il~~~l~~~~~-------~~~~ldG---~~~~~~r~~~i~~f~~~~~~~v 765 (866)
T COG0553 697 LDELLLDKLL-EEGHYHKVLIFSQFTPVLDLLEDYLKALGI-------KYVRLDG---STPAKRRQELIDRFNADEEEKV 765 (866)
T ss_pred HHHHHHHHHH-hhcccccEEEEeCcHHHHHHHHHHHHhcCC-------cEEEEeC---CCChhhHHHHHHHhhcCCCCce
Confidence 99998 4432 3455 999999999999999999998641 1344555 47789999999999996 355
Q ss_pred EEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCCH
Q 000380 487 LLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGNQ 541 (1601)
Q Consensus 487 vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~~ 541 (1601)
++++|.+++.|+|+..++.||+||..||+....|...|| |.||...|. ++..+..
T Consensus 766 ~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 766 FLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred EEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 777889999999999999999999999999999999998 999988664 4555543
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=165.36 Aligned_cols=152 Identities=27% Similarity=0.386 Sum_probs=105.2
Q ss_pred hhhhHHHHHHHHHHhc--------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME--------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~--------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
+.+|+||.+++..+.+ +++++.+|||+|||++++.++.++.. +++|++|+..|+.|+.+.+..+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 4689999999999984 67899999999999999987755331 7999999999999999999776
Q ss_pred cCCcEEEEeCCCC---------cCCchhhHHh--hhccCeEEEEcHHHHHHHHhcc-----------ccCccceeEEEEe
Q 000380 129 IGFKVRTFCGGSK---------RLKSHCDWEK--EIDQYEVLVMIPQILLYCLYHR-----------FIKMELIALLIFD 186 (1601)
Q Consensus 129 ~~l~v~~~~G~~~---------~~~~~~~~~~--~~~~~~VlV~Tp~~l~~~l~~~-----------~~~l~~i~llI~D 186 (1601)
..-.......... .......+.. .....+++++|.+.+....... .......++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 5433333221110 0011111221 2345789999999998765431 1234568999999
Q ss_pred cCccccccCCChHHHHHHHHcCCCCCCCCEEEEEecccc
Q 000380 187 ECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPV 225 (1601)
Q Consensus 187 EaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~ 225 (1601)
||||+. +...|..++. + ....+|+|||||.
T Consensus 154 EaH~~~--~~~~~~~i~~-~------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYP--SDSSYREIIE-F------KAAFILGLTATPF 183 (184)
T ss_dssp TGGCTH--HHHHHHHHHH-S------SCCEEEEEESS-S
T ss_pred hhhhcC--CHHHHHHHHc-C------CCCeEEEEEeCcc
Confidence 999994 2233788887 2 4588999999994
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-16 Score=148.06 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=76.8
Q ss_pred CCCcccccCcEEEeccCC----eEEEEEeecCCCCCCCCCCCCCCCChhhhhhhhcCccccCCCCCeEEeeecccccccc
Q 000380 871 WSSESDVENSLVYATHKK----WFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL 946 (1601)
Q Consensus 871 ~~~~~~~~~~vV~~~~~~----~~y~v~~i~~d~~p~s~~~~~~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL 946 (1601)
.+.++++.|++|+++|+| ++|+|++|++|++|.|+|+...+.||.+||+++||+.|.+.+||||+++.++.++|||
T Consensus 35 ~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s~~lNll 114 (122)
T cd02843 35 KFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGPEYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLL 114 (122)
T ss_pred CCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCCCCccHHHHHHHhcCeEeccCCCCcEeecCcccccccc
Confidence 467899999999999998 8999999999999999999878999999999999999999999999999999999999
Q ss_pred cCCcc
Q 000380 947 HNRKL 951 (1601)
Q Consensus 947 ~~~~~ 951 (1601)
++|..
T Consensus 115 ~pr~~ 119 (122)
T cd02843 115 TPRYV 119 (122)
T ss_pred Ccccc
Confidence 98864
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-15 Score=190.46 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=83.1
Q ss_pred CCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHH----hcCCccEEEEecccccC
Q 000380 422 QQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKF----RSGELNLLVATKVGEEG 497 (1601)
Q Consensus 422 ~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~F----r~g~~~vLVaT~vleeG 497 (1601)
+++.+++|-|||+..|..+++.|+..+. .+.-+|| .+....|.+.++++ ..+...|+|||+|.|.|
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-------~v~LlHS---Rf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP-------KVLLLHS---RFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC-------CEEEEec---ccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 4578999999999999999999998642 3556777 47777777666654 45678999999999999
Q ss_pred ccCCCccEEEEcCCCCCHHHHHHHhhc-CCCC--CCeEEEEEeCC
Q 000380 498 LDIQTCCLVIRFDLPETVASFIQSRGR-ARMP--QSEYAFLVDSG 539 (1601)
Q Consensus 498 IDip~~~~VI~fd~p~s~~~yiQr~GR-AR~g--~s~~vilv~~~ 539 (1601)
+|+ +.+++|-= +....+.+||.|| +|.| ..+.++++...
T Consensus 508 vDi-dfd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 508 VDI-DFDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred ecc-ccCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 999 58887754 4558999999999 5999 67777766543
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=182.19 Aligned_cols=313 Identities=19% Similarity=0.218 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCC
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGG 139 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~ 139 (1601)
.+..+++..+.+ +-+||.++||||||-.--..+.+ .-. ..+..+.+.-|.+--|...++.+.+.++-+++..+|-
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle--~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLE--EGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHh--hhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 445566665555 56899999999999765444422 111 3345788999999888889999999888877777776
Q ss_pred CCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEE
Q 000380 140 SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFG 219 (1601)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilg 219 (1601)
.....+.. -....|-++|.++|++.+..... ++.+++|||||+|+=.-.. .-.-..++....... +--++|.
T Consensus 129 ~iRfe~~~-----s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~t-DilLgllk~~~~~rr-~DLKiIi 200 (845)
T COG1643 129 SIRFESKV-----SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNT-DILLGLLKDLLARRR-DDLKLII 200 (845)
T ss_pred EEEeeccC-----CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHH-HHHHHHHHHHHhhcC-CCceEEE
Confidence 54322211 12468999999999998876543 8899999999999853111 111122222211111 1258999
Q ss_pred EeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHH
Q 000380 220 MTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKRE 298 (1601)
Q Consensus 220 LTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 298 (1601)
||||. +.+++...|+ +.++.+..+ .-|.. +.|.+.... . +
T Consensus 201 mSATl--------------d~~rfs~~f~~apvi~i~GR-------~fPVe--i~Y~~~~~~---d---~---------- 241 (845)
T COG1643 201 MSATL--------------DAERFSAYFGNAPVIEIEGR-------TYPVE--IRYLPEAEA---D---Y---------- 241 (845)
T ss_pred Eeccc--------------CHHHHHHHcCCCCEEEecCC-------ccceE--EEecCCCCc---c---h----------
Confidence 99997 3445666666 555554432 11211 122111000 0 0
Q ss_pred HHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHH
Q 000380 299 QYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS 378 (1601)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 378 (1601)
. +
T Consensus 242 ----------------------------------------------------------------------~----l---- 243 (845)
T COG1643 242 ----------------------------------------------------------------------I----L---- 243 (845)
T ss_pred ----------------------------------------------------------------------h----H----
Confidence 0 0
Q ss_pred HHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceE
Q 000380 379 EVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFL 458 (1601)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~ 458 (1601)
...+...+........+.+|||.+-....+...+.|.+.... ..-.+
T Consensus 244 ------------------------------~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~---~~~~i 290 (845)
T COG1643 244 ------------------------------LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG---DDLEI 290 (845)
T ss_pred ------------------------------HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc---CCcEE
Confidence 000111111111234568999999999999999999872110 22346
Q ss_pred EeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEE--------cCC----------CCCHHHHHH
Q 000380 459 VGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIR--------FDL----------PETVASFIQ 520 (1601)
Q Consensus 459 vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~--------fd~----------p~s~~~yiQ 520 (1601)
..+|+ .++.++|..+++.-..|.-+|++||+++|.+|.||++.+||. ||. |-|-.+..|
T Consensus 291 ~PLy~---~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 291 LPLYG---ALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred eeccc---cCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 67787 599999999888877787779999999999999999999994 332 346688999
Q ss_pred HhhcCCCCCCeEEE-EEeC
Q 000380 521 SRGRARMPQSEYAF-LVDS 538 (1601)
Q Consensus 521 r~GRAR~g~s~~vi-lv~~ 538 (1601)
|.|||.+-..|.|+ ++.+
T Consensus 368 RaGRAGR~~pGicyRLyse 386 (845)
T COG1643 368 RAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred hccccccCCCceEEEecCH
Confidence 99998445567777 7764
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=171.46 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH---HcCCcEE
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE---SIGFKVR 134 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~---~~~l~v~ 134 (1601)
.||||.+++..+.. +++|+.++||+|||++|++|+. ...+. ++.++||+||+.||.|.++.+.. ++|++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l--~~aL~---g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~ 167 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLY--LNALT---GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTG 167 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHH--HHHhh---cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 48999999998888 8999999999999999999984 33332 23489999999999997777665 5689999
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHH-HHHHhccccCcc-------ceeEEEEecCcccc
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQIL-LYCLYHRFIKME-------LIALLIFDECHHAQ 192 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l-~~~l~~~~~~l~-------~i~llI~DEaH~~~ 192 (1601)
.++|+.+...+... + +++|+|+||+.| .++++.+.+.++ .+.++|+|||+.++
T Consensus 168 ~i~GG~~~~eq~~~----y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 168 VLVSGSPLEKRKEI----Y-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred EEeCCCCHHHHHHH----c-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 99999875443222 2 589999999999 999988766655 45899999999995
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-14 Score=176.47 Aligned_cols=347 Identities=16% Similarity=0.176 Sum_probs=204.4
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCC
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGG 139 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~ 139 (1601)
.++.+++..+.+ +.++|.++||+|||.+.-..|++ .........++++--|++--|.-.++++..--+-..+.-.|.
T Consensus 176 ~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd--~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 176 KMRDTILDAIEENQVVVISGETGCGKTTQVPQFILD--EAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHH--HHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 455666676666 77899999999999998888844 443344566788888998888777777765433222222222
Q ss_pred CCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEE
Q 000380 140 SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFG 219 (1601)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilg 219 (1601)
.-..... ......+++||.++|++.+.. .-.+..+..||+||+|.-.. ...-.--+++.+.... +.-+++.
T Consensus 254 qvrl~~~-----~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i-~~DflLi~lk~lL~~~--p~LkvIL 324 (924)
T KOG0920|consen 254 QVRLESK-----RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSI-NTDFLLILLKDLLPRN--PDLKVIL 324 (924)
T ss_pred EEeeecc-----cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccC-CcccHHHHHHHHhhhC--CCceEEE
Confidence 2111110 112377999999999998876 44578899999999998642 1222334555554433 4468999
Q ss_pred EeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHH
Q 000380 220 MTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKRE 298 (1601)
Q Consensus 220 LTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 298 (1601)
||||.. .+.+...++ +.++++... .. ....-|. +++.
T Consensus 325 MSAT~d--------------ae~fs~YF~~~pvi~i~gr-----------------tf------pV~~~fL---EDil-- 362 (924)
T KOG0920|consen 325 MSATLD--------------AELFSDYFGGCPVITIPGR-----------------TF------PVKEYFL---EDIL-- 362 (924)
T ss_pred eeeecc--------------hHHHHHHhCCCceEeecCC-----------------Cc------chHHHHH---HHHH--
Confidence 999972 222333332 222222111 00 0000010 0000
Q ss_pred HHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHH
Q 000380 299 QYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS 378 (1601)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 378 (1601)
....+........ .+... . .+...
T Consensus 363 ---------------------------~~~~~~~~~~~~~-----------------------~~~~~--~---~~~~~- 386 (924)
T KOG0920|consen 363 ---------------------------SKTGYVSEDDSAR-----------------------SGPER--S---QLRLA- 386 (924)
T ss_pred ---------------------------HHhcccccccccc-----------------------ccccc--C---ccccc-
Confidence 0000000000000 00000 0 00000
Q ss_pred HHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcc-cCCCceEEEEecchhhHHHHHHHHHhcccccccccce
Q 000380 379 EVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFR-LQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHF 457 (1601)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~-~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~ 457 (1601)
.+.... ..-....+.+++.... ....+.+|||-+.......+.+.|..........-..
T Consensus 387 -----------------~~~~~~---~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ 446 (924)
T KOG0920|consen 387 -----------------RLKLWE---PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFA 446 (924)
T ss_pred -----------------cchhcc---ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceE
Confidence 000000 0123334444444322 2346789999999999999999887654332221233
Q ss_pred EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEE--------EcCCCCC----------HHHHH
Q 000380 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVI--------RFDLPET----------VASFI 519 (1601)
Q Consensus 458 ~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI--------~fd~p~s----------~~~yi 519 (1601)
+..+|+ .|+..+|+.+..+--.|.-+|++||+++|..|.|++|-+|| +||+-.+ ...-.
T Consensus 447 ilplHs---~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~ 523 (924)
T KOG0920|consen 447 ILPLHS---SIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAK 523 (924)
T ss_pred EEeccc---cCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchH
Confidence 556677 59999999999999999999999999999999999999999 4565433 34557
Q ss_pred HHhhcCCCCCCeEEE-EEeCC
Q 000380 520 QSRGRARMPQSEYAF-LVDSG 539 (1601)
Q Consensus 520 Qr~GRAR~g~s~~vi-lv~~~ 539 (1601)
||+|||.+-++|.++ +++..
T Consensus 524 QR~GRAGRv~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 524 QRRGRAGRVRPGICYHLYTRS 544 (924)
T ss_pred HhcccccCccCCeeEEeechh
Confidence 999998556677777 66543
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=166.62 Aligned_cols=121 Identities=23% Similarity=0.269 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..++..|.+.|..+. ..+.++||||+++..++.|++.|...+.. +..+|+ +++..+|..+++.|+.|++
T Consensus 429 ~~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~gi~-------~~~~h~---~~~~~~R~~~l~~f~~g~i 497 (652)
T PRK05298 429 KGQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKELGIK-------VRYLHS---DIDTLERVEIIRDLRLGEF 497 (652)
T ss_pred cccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhccee-------EEEEEC---CCCHHHHHHHHHHHHcCCc
Confidence 445667777776653 45789999999999999999999886531 334555 4899999999999999999
Q ss_pred cEEEEecccccCccCCCccEEEEcCC-----CCCHHHHHHHhhcC-CCCCCeEEEEEeC
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDL-----PETVASFIQSRGRA-RMPQSEYAFLVDS 538 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip~~~~VI~fd~-----p~s~~~yiQr~GRA-R~g~s~~vilv~~ 538 (1601)
.|||||+++++|+|+|++++||++|. |.+..+|+||+||+ |. ..|.++++..
T Consensus 498 ~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~ 555 (652)
T PRK05298 498 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYAD 555 (652)
T ss_pred eEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEec
Confidence 99999999999999999999999885 78999999999995 85 5777775543
|
|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=150.37 Aligned_cols=217 Identities=18% Similarity=0.182 Sum_probs=173.8
Q ss_pred cchhhcHHHHHHHhC-CccCCHHHHHHhhcCCCCCCC------------------CCCCchhhhhhHHHHHHHHHHHHHH
Q 000380 1206 LSASLDMATLEILLG-HQFLHRGLLLQAFVHPSFNRL------------------GGCYQRLEFLGDAVLDYLITSYLYS 1266 (1601)
Q Consensus 1206 ~~~~~~~~~le~~lg-y~F~~~~ll~~Alth~s~~~~------------------~~~yerLefLGDavL~~~v~~~l~~ 1266 (1601)
+..+..+..|+++|| -.| ...+|..|||.+||... ..+|+-|--.|-.++++.|++||-.
T Consensus 59 W~~~sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~ 137 (333)
T KOG3769|consen 59 WDYNSELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKC 137 (333)
T ss_pred cchhHHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334456889999999 666 68889999999998631 4579999999999999999999999
Q ss_pred hCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCcccccCCCCCCchhhhHHHHh
Q 000380 1267 VYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESS 1346 (1601)
Q Consensus 1267 ~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~ 1346 (1601)
+||.++...++.+-+.+++.+.||.+|..+|+.++++...-....+ ....+...+++-|+
T Consensus 138 kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~~e--------------------isq~ess~~aI~Al 197 (333)
T KOG3769|consen 138 KYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKVGE--------------------ISQDESSRRAIGAL 197 (333)
T ss_pred hccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCchh--------------------hhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887433221000 01125677888999
Q ss_pred hhhhhhcCCCChHHHHHHHHHhh-hhhhhcccC--CCChhHHHHHHHhhcCCCccccc-------ccCCCeEEEEEEEec
Q 000380 1347 LGAILLDSGFNLNTVWKIMLSFL-DPILKFSNL--QLNPIRELLELCNSYDLDLQFPS-------LKKGGKFLAEAKVTG 1416 (1601)
Q Consensus 1347 iGAi~~D~g~~~~~v~~~~~~~~-~~~~~~~~~--~~~p~~~L~e~~~~~~~~~~~~~-------~~~~~~f~v~v~V~~ 1416 (1601)
+|+++...|++ .|++|+.+.| ..-+...++ ..+|.+.|-++|++.+..-+.+. ....+.|.|.++-+.
T Consensus 198 ~~~~~~ek~~~--~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~k 275 (333)
T KOG3769|consen 198 LGSVGLEKGFN--FVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGK 275 (333)
T ss_pred HhcccHHHHHH--HHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCc
Confidence 99999888877 6777765443 333443344 37999999999999998776554 234578999999887
Q ss_pred ccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhc
Q 000380 1417 KDKDVFISACATNLSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1417 ~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
+. ++.|.|.|-+.|+..||..||.++=..
T Consensus 276 kl-----lGqG~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 276 KL-----LGQGQGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred hh-----hccCcchHHHHHHHHHHHHHHHHHHcC
Confidence 77 899999999999999999999998553
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-13 Score=177.15 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=74.4
Q ss_pred CceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCc
Q 000380 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTC 503 (1601)
Q Consensus 424 ~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~ 503 (1601)
+.++|||+++....+.++..|.......++. +.. .+ .. ..|.+++++|++|+..||++|+.+.||||+|+.
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~---~l~--q~---~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~ 744 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEFEGYE---VLA--QG---IN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGN 744 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccccCce---EEe--cC---CC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCC
Confidence 4689999999999999999987532111111 111 11 22 467889999999999999999999999999996
Q ss_pred c--EEEEcCCCC----C--------------------------HHHHHHHhhcC-CCC-CCeEEEEEe
Q 000380 504 C--LVIRFDLPE----T--------------------------VASFIQSRGRA-RMP-QSEYAFLVD 537 (1601)
Q Consensus 504 ~--~VI~fd~p~----s--------------------------~~~yiQr~GRA-R~g-~s~~vilv~ 537 (1601)
. +||...+|. + ...+.|.+||. |.. +.|.+++++
T Consensus 745 ~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 745 GLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred ceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 5 566555552 1 24467999996 766 445666664
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-13 Score=159.59 Aligned_cols=315 Identities=17% Similarity=0.235 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCC
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGG 139 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~ 139 (1601)
.|-.+++..+.+ +-+||.++||||||-+---.+.+ . .-...+++.+.-|+|.-|.-.+++...-.+-+.+.-+|-
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~e---a-G~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAE---A-GFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHh---c-ccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 444567776666 67899999999999764433322 1 111233488888999888888888877766555554444
Q ss_pred CCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEE
Q 000380 140 SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFG 219 (1601)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilg 219 (1601)
.-...+.. -....|.++|.++|++-+... -.+++.++||+||||.-.-. ..-.-.+++...... +.-+++.
T Consensus 130 ~IRFed~t-----s~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~-TDiLlGlLKki~~~R--~~LklIi 200 (674)
T KOG0922|consen 130 TIRFEDST-----SKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLH-TDILLGLLKKILKKR--PDLKLII 200 (674)
T ss_pred EEEecccC-----CCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhH-HHHHHHHHHHHHhcC--CCceEEE
Confidence 32111100 013689999999999765543 24789999999999985210 111222333332221 2248999
Q ss_pred EeccccCCCCCccccchHHHHHHHHHhccC-eEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHH
Q 000380 220 MTASPVVGKGASAQANLPKSINSLENLLDA-KVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKRE 298 (1601)
Q Consensus 220 LTATP~~~~~~~~~~~l~~~i~~Le~~l~~-~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 298 (1601)
||||. +.+.+...|.. .+..+..+ .-|.+..+...|.
T Consensus 201 mSATl--------------da~kfS~yF~~a~i~~i~GR-------~fPVei~y~~~p~--------------------- 238 (674)
T KOG0922|consen 201 MSATL--------------DAEKFSEYFNNAPILTIPGR-------TFPVEILYLKEPT--------------------- 238 (674)
T ss_pred Eeeee--------------cHHHHHHHhcCCceEeecCC-------CCceeEEeccCCc---------------------
Confidence 99997 34455555543 55554433 1132222211111
Q ss_pred HHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHH
Q 000380 299 QYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS 378 (1601)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 378 (1601)
..|+..+.
T Consensus 239 ------------------------------------------------------------------------~dYv~a~~ 246 (674)
T KOG0922|consen 239 ------------------------------------------------------------------------ADYVDAAL 246 (674)
T ss_pred ------------------------------------------------------------------------hhhHHHHH
Confidence 01111110
Q ss_pred HHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc-ccccccce
Q 000380 379 EVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF-LASWRCHF 457 (1601)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~-~~~~~~~~ 457 (1601)
....++ +..++.+-+|||-...+..+.+.+.|.+... .....+..
T Consensus 247 -------------------------------~tv~~I---h~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~ 292 (674)
T KOG0922|consen 247 -------------------------------ITVIQI---HLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPEL 292 (674)
T ss_pred -------------------------------HHHHHH---HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcce
Confidence 011111 1113445799999999999999998887632 11111224
Q ss_pred EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEE--------cCC----------CCCHHHHH
Q 000380 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIR--------FDL----------PETVASFI 519 (1601)
Q Consensus 458 ~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~--------fd~----------p~s~~~yi 519 (1601)
+..+++ .++.++|.++++.--.|.-+|++||+++|..|.|+++.+||. |++ |-|..+-.
T Consensus 293 ~lply~---aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~ 369 (674)
T KOG0922|consen 293 ILPLYG---ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASAN 369 (674)
T ss_pred eeeecc---cCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHh
Confidence 556777 499999999998888899999999999999999999999994 333 45778899
Q ss_pred HHhhcCCCCCCeEEE-EEeCC
Q 000380 520 QSRGRARMPQSEYAF-LVDSG 539 (1601)
Q Consensus 520 Qr~GRAR~g~s~~vi-lv~~~ 539 (1601)
||.|||.+-+.|.++ ++++.
T Consensus 370 QRaGRAGRt~pGkcyRLYte~ 390 (674)
T KOG0922|consen 370 QRAGRAGRTGPGKCYRLYTES 390 (674)
T ss_pred hhcccCCCCCCceEEEeeeHH
Confidence 999998444456666 77643
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=162.55 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccc-cccccc--------------eEEeccCCCCcC
Q 000380 404 FFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFL-ASWRCH--------------FLVGVNAGLKSM 468 (1601)
Q Consensus 404 ~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~-~~~~~~--------------~~vg~~~g~~~~ 468 (1601)
.+|+|+..|+++|.... .-|.+.|||.++..+...|..+|...... ..+... -...+.| ..
T Consensus 1123 ~~SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDG---st 1198 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDG---ST 1198 (1567)
T ss_pred hcCcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecC---cc
Confidence 45999999999998763 45789999999999999999999854211 000000 1112222 47
Q ss_pred CHHHHHHHHHHHhcCC----ccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEE---EEeCCC
Q 000380 469 SRNAMKSILEKFRSGE----LNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF---LVDSGN 540 (1601)
Q Consensus 469 ~~~~r~~~l~~Fr~g~----~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi---lv~~~~ 540 (1601)
+..+|+...++|.+-. --.||+|.+++.|||+-++|.||.||..|||.--+|++=|+ |.||.+-|+ |+..+.
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc
Confidence 7889999999998743 22799999999999999999999999999999999999998 999998665 566676
Q ss_pred HhHH
Q 000380 541 QREL 544 (1601)
Q Consensus 541 ~~~~ 544 (1601)
.++.
T Consensus 1279 mEeK 1282 (1567)
T KOG1015|consen 1279 MEEK 1282 (1567)
T ss_pred HHHH
Confidence 6543
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=152.51 Aligned_cols=159 Identities=25% Similarity=0.301 Sum_probs=116.8
Q ss_pred hhhhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC---
Q 000380 56 KQIARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG--- 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~--- 130 (1601)
...++++|.+++..+.. +++++.++||+|||.+++.++.+. ......++++|++|+..++.||...+.....
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEA---LKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHH---hcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 35689999999999988 699999999999999888887442 2222246799999999999999999998763
Q ss_pred -CcEEEEeCCCCcCCchhhHHhhhccC-eEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcC
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKEIDQY-EVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~~~~~~~~~-~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~ 208 (1601)
.....+.+... ...|.....+. +|+++|++.+.+.+........+++++|+||||++... .+...+..+..
T Consensus 83 ~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~---~~~~~~~~~~~ 155 (201)
T smart00487 83 LKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG---GFGDQLEKLLK 155 (201)
T ss_pred eEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC---CcHHHHHHHHH
Confidence 23333333321 23444444455 99999999999988887777888999999999999531 23333333322
Q ss_pred CCCCCCCEEEEEecccc
Q 000380 209 PDIMKVPRIFGMTASPV 225 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP~ 225 (1601)
.. ...++++++||||.
T Consensus 156 ~~-~~~~~~v~~saT~~ 171 (201)
T smart00487 156 LL-PKNVQLLLLSATPP 171 (201)
T ss_pred hC-CccceEEEEecCCc
Confidence 22 23588999999994
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=169.58 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~ 485 (1601)
..|...+.+.+.... ..+.++||||+++..++.|++.|...++. . ..+|+ .+.+|+..+..|+.+..
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~----h---~vLna-----kq~~REa~Iia~AG~~g 647 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIA----H---NVLNA-----KQHDREAEIVAEAGQKG 647 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCC----c---eeecC-----CHHHhHHHHHHhcCCCC
Confidence 468888988887642 45789999999999999999999986542 1 22332 57788999999999999
Q ss_pred cEEEEecccccCccCC---Ccc-----EEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEEeC
Q 000380 486 NLLVATKVGEEGLDIQ---TCC-----LVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDS 538 (1601)
Q Consensus 486 ~vLVaT~vleeGIDip---~~~-----~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~~ 538 (1601)
.|+|||+++++|+||+ .+. +||.++.|.|.+.|.|++||+ |.|..|.++++-.
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvS 709 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVS 709 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEec
Confidence 9999999999999999 453 459999999999999999995 9999999885443
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=160.49 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=94.7
Q ss_pred hhhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc---C-
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---G- 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~- 130 (1601)
.+.|+..|.-...++.+ +..-+.+|||.|||.--++....++ ..++++++|+||..||.|.++.++++. +
T Consensus 80 G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-----hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 34688999999999888 8899999999999964333322222 246899999999999999999998875 2
Q ss_pred CcEEE-EeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 131 FKVRT-FCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 131 l~v~~-~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
..+.. |+|..+....+....+.- .+.||+|+|.+-|...+.. +.--++++|++|.++.++
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHH
Confidence 33333 778776555444444432 2589999999987654432 112468999999999986
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-13 Score=138.09 Aligned_cols=142 Identities=27% Similarity=0.315 Sum_probs=102.4
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC--CcEEEEeCCCCcCCchhhHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWE 150 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~--l~v~~~~G~~~~~~~~~~~~ 150 (1601)
+++++.++||+|||.+++.++..+.. ....+++++++|++.|+.|+.+.+..... ..+..+.+....... +.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~---~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD---SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQ---EK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh---cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHH---HH
Confidence 47899999999999999998855322 23456899999999999999999988874 788888776543222 22
Q ss_pred hhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 151 KEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 151 ~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
....+.+|+++|++.+...+.........++++||||+|.+.. .......+..... .....+++++||||
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~--~~~~~~~~~~~~~--~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN--QGFGLLGLKILLK--LPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh--cchHHHHHHHHhh--CCccceEEEEeccC
Confidence 2345689999999999887766555567789999999999952 2222211111111 12457899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-13 Score=135.63 Aligned_cols=118 Identities=30% Similarity=0.452 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCcc
Q 000380 407 KKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELN 486 (1601)
Q Consensus 407 ~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~ 486 (1601)
.|...+.+++.... ..+.++||||+++..++.+.+.|..... .+..+|+ +++..+|..++++|++|...
T Consensus 12 ~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~-------~~~~~~~---~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 12 EKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRKPGI-------KVAALHG---DGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred HHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHhcCC-------cEEEEEC---CCCHHHHHHHHHHHHcCCCc
Confidence 68888888888753 2567999999999999999999986321 1334455 48889999999999999999
Q ss_pred EEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEE
Q 000380 487 LLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFL 535 (1601)
Q Consensus 487 vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vil 535 (1601)
+||+|+++++|+|+|.+++||.++.|++...|+|++||+ |.|+.+.+++
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 999999999999999999999999999999999999997 9998887764
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-13 Score=121.46 Aligned_cols=68 Identities=37% Similarity=0.595 Sum_probs=63.2
Q ss_pred EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCC
Q 000380 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMP 528 (1601)
Q Consensus 458 ~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g 528 (1601)
+..+|+ +++.++|.++++.|++|+.++||||+++++|||+|.+++||++++|+|+..|+|++||+ |.|
T Consensus 10 ~~~i~~---~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 10 VAIIHG---DMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEEEST---TSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred EEEEEC---CCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 444566 59999999999999999999999999999999999999999999999999999999996 976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=140.45 Aligned_cols=119 Identities=23% Similarity=0.297 Sum_probs=96.3
Q ss_pred HHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccE
Q 000380 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNL 487 (1601)
Q Consensus 408 K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~v 487 (1601)
.++-|+.-+... ...+.|++|-+=|+.+|+.|.++|.+.+.. +--+|+ +...-+|.++++..|.|++.|
T Consensus 431 QvdDL~~EI~~r-~~~~eRvLVTtLTKkmAEdLT~Yl~e~gik-------v~YlHS---didTlER~eIirdLR~G~~Dv 499 (663)
T COG0556 431 QVDDLLSEIRKR-VAKNERVLVTTLTKKMAEDLTEYLKELGIK-------VRYLHS---DIDTLERVEIIRDLRLGEFDV 499 (663)
T ss_pred cHHHHHHHHHHH-HhcCCeEEEEeehHHHHHHHHHHHHhcCce-------EEeeec---cchHHHHHHHHHHHhcCCccE
Confidence 344444444332 245789999999999999999999998652 334577 488889999999999999999
Q ss_pred EEEecccccCccCCCccEEEEcCCC-----CCHHHHHHHhhcC-CCCCCeEEEEEeC
Q 000380 488 LVATKVGEEGLDIQTCCLVIRFDLP-----ETVASFIQSRGRA-RMPQSEYAFLVDS 538 (1601)
Q Consensus 488 LVaT~vleeGIDip~~~~VI~fd~p-----~s~~~yiQr~GRA-R~g~s~~vilv~~ 538 (1601)
||.-+.+-||+|+|.|.+|..+|.. .|-.+.||-+||| |. -.|.|+|+..
T Consensus 500 LVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD 555 (663)
T COG0556 500 LVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYAD 555 (663)
T ss_pred EEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEch
Confidence 9999999999999999999988864 5889999999997 65 4566777653
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=146.47 Aligned_cols=329 Identities=14% Similarity=0.082 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc-------C
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI-------G 130 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~-------~ 130 (1601)
...+|.+++..+-+ +|+++.-.|.+||.+++.+....+.. ..+....+++.|++++++.+.+.+.-+. +
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQT---LCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhh---cCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 34689999998888 89999999999999999887654322 2234568999999999988766543222 2
Q ss_pred CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccC----ccceeEEEEecCccccccCCChHHHHHHH-
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK----MELIALLIFDECHHAQVKSNHPYAKIMKD- 205 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~----l~~i~llI~DEaH~~~~~~~~~~~~i~~~- 205 (1601)
.-|..+.|..... +..+.+ .+.+++++.|............. +-...++++||||.....-..-....|+.
T Consensus 364 A~V~~~D~~sE~~--~~A~~R--~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L 439 (1034)
T KOG4150|consen 364 AYVEMSDKLSETT--KSALKR--IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRAL 439 (1034)
T ss_pred ceeecccCCCchh--HHHHHh--cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHH
Confidence 2233444443322 222332 36899999999887654333222 34457899999999842211112223333
Q ss_pred ------HcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccC---eEEeecCHHHHhcccCCCeEEEEEecC
Q 000380 206 ------FYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA---KVYSVEDAEDLESFVSSPVVRVYQYGP 276 (1601)
Q Consensus 206 ------~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~---~~~~~~~~~~l~~~~~~p~~~~~~~~~ 276 (1601)
|+... .-.++--+||.... .+....+++- ..++... .+......+.+.|
T Consensus 440 ~~L~~~F~~~~---~~~~~~~~~~~K~~------------~~~~~~~~~~~E~~Li~~DG-------SPs~~K~~V~WNP 497 (1034)
T KOG4150|consen 440 SDLIKGFEASI---NMGVYDGDTPYKDR------------TRLRSELANLSELELVTIDG-------SPSSEKLFVLWNP 497 (1034)
T ss_pred HHHHHHHHhhc---CcceEeCCCCcCCH------------HHHHHHhcCCcceEEEEecC-------CCCccceEEEeCC
Confidence 33321 12344444443111 1112222221 1111110 1112233444444
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHH
Q 000380 277 VINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRN 356 (1601)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~ 356 (1601)
...+.... +
T Consensus 498 ~~~P~~~~---------------------------------------------------------------------~-- 506 (1034)
T KOG4150|consen 498 SAPPTSKS---------------------------------------------------------------------E-- 506 (1034)
T ss_pred CCCCcchh---------------------------------------------------------------------h--
Confidence 43221100 0
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhh
Q 000380 357 ELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVT 436 (1601)
Q Consensus 357 ~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~ 436 (1601)
.+.|+.....++.+. ...+.|||-||..|..
T Consensus 507 ------------------------------------------------~~~~i~E~s~~~~~~-i~~~~R~IAFC~~R~~ 537 (1034)
T KOG4150|consen 507 ------------------------------------------------KSSKVVEVSHLFAEM-VQHGLRCIAFCPSRKL 537 (1034)
T ss_pred ------------------------------------------------hhhHHHHHHHHHHHH-HHcCCcEEEeccHHHH
Confidence 011111111122111 1246799999999999
Q ss_pred HHHHHHHHHhccccccc-ccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCH
Q 000380 437 ARALSYILQNLKFLASW-RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515 (1601)
Q Consensus 437 a~~L~~~L~~~~~~~~~-~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~ 515 (1601)
++.+....++.....+- -...+..+.| +.+.++|+.+....-.|++.-+|||+++|.||||...+.|++.+.|.|.
T Consensus 538 CEL~~~~~R~I~~ET~~~LV~~i~SYRG---GY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~ 614 (1034)
T KOG4150|consen 538 CELVLCLTREILAETAPHLVEAITSYRG---GYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSI 614 (1034)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcC---ccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhH
Confidence 98887776654321110 0111223334 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC-CCCCCeEEEEEeCC
Q 000380 516 ASFIQSRGRA-RMPQSEYAFLVDSG 539 (1601)
Q Consensus 516 ~~yiQr~GRA-R~g~s~~vilv~~~ 539 (1601)
..+.|..||| |+.++..++.+...
T Consensus 615 aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 615 ANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred HHHHHHhccccccCCCceEEEEEec
Confidence 9999999997 88888777654433
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-10 Score=145.69 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=76.3
Q ss_pred cCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccccCCCCCcccc
Q 000380 155 QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234 (1601)
Q Consensus 155 ~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~ 234 (1601)
...|+++||+++.+.+..+.+.++++..|||||||++. +++.|.-|++.|...+ +.+.|.|+||+|..-...
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~--~~~~eaFI~rlyr~~n--~~gfIkafSdsP~~~~~g---- 78 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRII--ESSQEAFILRLYRQKN--KTGFIKAFSDNPEAFTMG---- 78 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccc--ccccHHHHHHHHHHhC--CCcceEEecCCCcccccc----
Confidence 37899999999999999999999999999999999996 7888999998885543 468999999999653211
Q ss_pred chHHHHHHHHHhcc-CeEEe-ecCHHHHhcccCC
Q 000380 235 NLPKSINSLENLLD-AKVYS-VEDAEDLESFVSS 266 (1601)
Q Consensus 235 ~l~~~i~~Le~~l~-~~~~~-~~~~~~l~~~~~~ 266 (1601)
+ ..+..+.+.|. ..+.- .....++..++..
T Consensus 79 -~-~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~ 110 (814)
T TIGR00596 79 -F-SPLETKMRNLFLRHVYLWPRFHVEVASSLEK 110 (814)
T ss_pred -h-HHHHHHHHHhCcCeEEEeCCCchHHHHHhcc
Confidence 1 23444444444 33333 3455577777765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-11 Score=153.84 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=92.1
Q ss_pred chhhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHH-HH---H
Q 000380 55 PKQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQA-KV---I 125 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~-~~---l 125 (1601)
+.+..|+-|.++...+.+ +.+++.++||+|||++|++|+.. .. .+++++|++||++|++|.. +. +
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~--~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA--QS----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH--hc----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 346799999997665554 66889999999999999999743 21 3568999999999999983 43 4
Q ss_pred HHHcCCcEEEEeCCCCcC--------------------------------------------CchhhHHh----------
Q 000380 126 EESIGFKVRTFCGGSKRL--------------------------------------------KSHCDWEK---------- 151 (1601)
Q Consensus 126 ~~~~~l~v~~~~G~~~~~--------------------------------------------~~~~~~~~---------- 151 (1601)
.+.+++++..+.|+.+.. .....|..
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 455677777665543310 00112332
Q ss_pred --------------hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 152 --------------EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 152 --------------~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
....++|+|+....|...+.... .+...+.+||||||++-
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 12346899999998887654432 24678999999999994
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-12 Score=115.74 Aligned_cols=75 Identities=43% Similarity=0.665 Sum_probs=67.2
Q ss_pred chhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecC--CceEEEcC--CCCcchhHHHHHHHHHHHHHHH
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAP--EKIIECIG--EPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1521 ~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~--~~~~~~~g--~g~~~Kk~Ak~~AA~~al~~l~ 1595 (1601)
++++.|+|+|+|++|..|.|++..+.||+|.+.|+++|+|.+.+. .+.+.+.+ +++++||+||..||+.||+.|.
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999999999999999986664 24566666 9999999999999999999873
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-11 Score=138.02 Aligned_cols=313 Identities=20% Similarity=0.224 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCC
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGG 139 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~ 139 (1601)
+|-.+++.++.. +-+||.++||||||.+--..+.+ .--...++++-+--|.+.-+...+.++.+-.|.+.+.=+|-
T Consensus 268 ~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~E---aGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGY 344 (902)
T KOG0923|consen 268 PYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYE---AGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGY 344 (902)
T ss_pred hhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHh---cccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccce
Confidence 455567776666 56799999999999653332221 11122355688888999999999998888877766544444
Q ss_pred CCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEE
Q 000380 140 SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFG 219 (1601)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilg 219 (1601)
.-...+... +..-+-+||.++|++-+... ..+...++|||||||.-.-.-+- .-.+++...+.. +--++|.
T Consensus 345 sIRFEdcTS-----ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDI-LfgLvKDIar~R--pdLKllI 415 (902)
T KOG0923|consen 345 SIRFEDCTS-----EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDI-LFGLVKDIARFR--PDLKLLI 415 (902)
T ss_pred EEEeccccC-----cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhH-HHHHHHHHHhhC--CcceEEe
Confidence 321111000 12457799999999765543 46788999999999985211111 223333332222 2357888
Q ss_pred EeccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHH
Q 000380 220 MTASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKRE 298 (1601)
Q Consensus 220 LTATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 298 (1601)
.|||. ..++....|+ +.++.+..+ .-|.. +.|.+..
T Consensus 416 sSAT~--------------DAekFS~fFDdapIF~iPGR-------RyPVd--i~Yt~~P-------------------- 452 (902)
T KOG0923|consen 416 SSATM--------------DAEKFSAFFDDAPIFRIPGR-------RYPVD--IFYTKAP-------------------- 452 (902)
T ss_pred ecccc--------------CHHHHHHhccCCcEEeccCc-------cccee--eecccCC--------------------
Confidence 99996 2445555554 333333222 00111 1111100
Q ss_pred HHHHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHH
Q 000380 299 QYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS 378 (1601)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 378 (1601)
...|+..+.
T Consensus 453 -----------------------------------------------------------------------EAdYldAai 461 (902)
T KOG0923|consen 453 -----------------------------------------------------------------------EADYLDAAI 461 (902)
T ss_pred -----------------------------------------------------------------------chhHHHHHH
Confidence 001221111
Q ss_pred HHHHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhccc--ccccccc
Q 000380 379 EVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF--LASWRCH 456 (1601)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~--~~~~~~~ 456 (1601)
..++.-+..++.+-+|||-.-.+..+...+.|.+... -..++--
T Consensus 462 ----------------------------------~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~el 507 (902)
T KOG0923|consen 462 ----------------------------------VTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIREL 507 (902)
T ss_pred ----------------------------------hhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceE
Confidence 1111111223445688888766665555555544310 0112333
Q ss_pred eEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCC------------------CCCHHHH
Q 000380 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDL------------------PETVASF 518 (1601)
Q Consensus 457 ~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~------------------p~s~~~y 518 (1601)
.+..+++ +++.+.|..|++.--.|--+|++||+++|..|.|++++.||.-+. |-|-.+-
T Consensus 508 iv~PiYa---NLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA 584 (902)
T KOG0923|consen 508 IVLPIYA---NLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASA 584 (902)
T ss_pred EEeeccc---cCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhh
Confidence 4556676 599999999999888999999999999999999999999995333 4466788
Q ss_pred HHHhhcC-CCCCCeEEE-EEe
Q 000380 519 IQSRGRA-RMPQSEYAF-LVD 537 (1601)
Q Consensus 519 iQr~GRA-R~g~s~~vi-lv~ 537 (1601)
.||.||| |-| .|.|+ +++
T Consensus 585 ~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 585 NQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred hhhccccCCCC-CCceEEeec
Confidence 9999998 665 45555 665
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-12 Score=148.70 Aligned_cols=156 Identities=20% Similarity=0.257 Sum_probs=96.7
Q ss_pred HHHHHHHHHhc--------------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 62 YQLELCKKAME--------------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 62 yQ~e~~~~~l~--------------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
||.+++..+++ +++|++.++|+|||++++..+..+.........+.+|||||. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 78888876633 468999999999999999887543221111222369999999 888999999999
Q ss_pred Hc---CCcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHH---hccccCccceeEEEEecCccccccCCChHHH
Q 000380 128 SI---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCL---YHRFIKMELIALLIFDECHHAQVKSNHPYAK 201 (1601)
Q Consensus 128 ~~---~l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l---~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~ 201 (1601)
++ .+++..+.|.... ...........+|+|+|++.+.... ....+..-++++||+||+|.+.+.. .....
T Consensus 80 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~ 155 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSER---RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYK 155 (299)
T ss_dssp HSGT-TS-EEEESSSCHH---HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHH
T ss_pred cccccccccccccccccc---ccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-ccccc
Confidence 98 4688888777611 1111112345899999999998110 0111222459999999999995322 22233
Q ss_pred HHHHHcCCCCCCCCEEEEEeccccCCC
Q 000380 202 IMKDFYKPDIMKVPRIFGMTASPVVGK 228 (1601)
Q Consensus 202 i~~~~~~~~~~~~p~ilgLTATP~~~~ 228 (1601)
.+..+ ..+++++|||||..+.
T Consensus 156 ~l~~l------~~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 156 ALRKL------RARYRWLLSGTPIQNS 176 (299)
T ss_dssp HHHCC------CECEEEEE-SS-SSSG
T ss_pred ccccc------ccceEEeecccccccc
Confidence 33333 2578899999998764
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=146.48 Aligned_cols=134 Identities=11% Similarity=0.067 Sum_probs=100.9
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-CcEEEEeCCCCcCCchhhHHhhhc
Q 000380 76 IVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG-FKVRTFCGGSKRLKSHCDWEKEID 154 (1601)
Q Consensus 76 Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~-l~v~~~~G~~~~~~~~~~~~~~~~ 154 (1601)
|..+-+|||||.+|+-++..... .++.+|||+|...|+.|..+.|+..++ ..+..++++.+...+...|.+...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-----~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-----AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC
Confidence 44444699999999998855332 367899999999999999999999997 889999999998888889998776
Q ss_pred c-CeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCC-ChH---HHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 155 Q-YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSN-HPY---AKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 155 ~-~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~---~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
+ .+|+|+|-. .-|..+.+++|||+||-|.-..+.. .|| +.+.... ......+-||| ||||
T Consensus 239 G~~~IViGtRS-------AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~R--a~~~~~~lvLg-SaTP 303 (665)
T PRK14873 239 GQARVVVGTRS-------AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLR--AHQHGCALLIG-GHAR 303 (665)
T ss_pred CCCcEEEEcce-------eEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHH--HHHcCCcEEEE-CCCC
Confidence 6 689999953 2377899999999999998754322 243 2222211 11124455555 9999
|
|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=126.20 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=66.4
Q ss_pred cCchhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHHhcC
Q 000380 1519 NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1519 ~~~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~~~~ 1598 (1601)
..|||+.||||||+++... .|.++.+.||+|.+.|++.|.|+ | ...+.|.|+| ||+|||+||+.||..|...-
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~----g-~~~g~G~G~S-KKeAEQ~AAk~AL~~L~~~~ 179 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVS----G-KVVATASGCS-KKLARHAACADALTILINNC 179 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEEC----C-EEEEEEEeCC-HHHHHHHHHHHHHHHHHhhc
Confidence 3599999999999999877 89998899999999999999995 3 4454899999 99999999999999998765
Q ss_pred CC
Q 000380 1599 YL 1600 (1601)
Q Consensus 1599 ~~ 1600 (1601)
.|
T Consensus 180 ~i 181 (183)
T PHA02701 180 GI 181 (183)
T ss_pred cc
Confidence 44
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=135.60 Aligned_cols=310 Identities=17% Similarity=0.218 Sum_probs=184.5
Q ss_pred HHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Q 000380 63 QLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSK 141 (1601)
Q Consensus 63 Q~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~ 141 (1601)
+.+++..+.. +-+||+++||||||.+-...+.+ -.-...+.+-+--|.+.-+.-.++.+...++...+.-.|-.-
T Consensus 361 R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~e----dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 361 RDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYE----DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHh----cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 4556665555 44689999999999765443321 111224466677799999999999888877655444444322
Q ss_pred cCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEe
Q 000380 142 RLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMT 221 (1601)
Q Consensus 142 ~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLT 221 (1601)
..++... .+..|-++|.++|++-... .-.+.+.+.||+||||.-.-..+ -.-.+++...... ..-+++.+|
T Consensus 437 RFEdvT~-----~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtD-ilfGllk~~larR--rdlKliVtS 507 (1042)
T KOG0924|consen 437 RFEDVTS-----EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTD-ILFGLLKKVLARR--RDLKLIVTS 507 (1042)
T ss_pred EeeecCC-----CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchH-HHHHHHHHHHHhh--ccceEEEee
Confidence 1111000 1356889999999863322 12467899999999998642111 1222333322211 235788899
Q ss_pred ccccCCCCCccccchHHHHHHHHHhcc-CeEEeecCHHHHhcccCCCeEEEEEecCCCCCCCchhhhHHHHHHHHHHHHH
Q 000380 222 ASPVVGKGASAQANLPKSINSLENLLD-AKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300 (1601)
Q Consensus 222 ATP~~~~~~~~~~~l~~~i~~Le~~l~-~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 300 (1601)
||. +.+++.+.|+ +..+++..+ .-|....+.-.
T Consensus 508 ATm--------------~a~kf~nfFgn~p~f~IpGR-------TyPV~~~~~k~------------------------- 541 (1042)
T KOG0924|consen 508 ATM--------------DAQKFSNFFGNCPQFTIPGR-------TYPVEIMYTKT------------------------- 541 (1042)
T ss_pred ccc--------------cHHHHHHHhCCCceeeecCC-------ccceEEEeccC-------------------------
Confidence 996 4567777777 555554433 01111111000
Q ss_pred HHHhhhhcccchhhhhHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHhcCchhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 000380 301 ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEV 380 (1601)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 380 (1601)
....|++.++.
T Consensus 542 --------------------------------------------------------------------p~eDYVeaavk- 552 (1042)
T KOG0924|consen 542 --------------------------------------------------------------------PVEDYVEAAVK- 552 (1042)
T ss_pred --------------------------------------------------------------------chHHHHHHHHh-
Confidence 01122211111
Q ss_pred HHHHHhcCCCCCccchhhhccCCCCCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHH----hcccccccccc
Q 000380 381 FAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ----NLKFLASWRCH 456 (1601)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~l~~~~~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~----~~~~~~~~~~~ 456 (1601)
+.+.-+.....+-+|||..-.+..+.....++ ++.... ...-
T Consensus 553 ---------------------------------q~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~-~~~L 598 (1042)
T KOG0924|consen 553 ---------------------------------QAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP-TTDL 598 (1042)
T ss_pred ---------------------------------hheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC-CCce
Confidence 01111112234568999987665555554444 332211 1122
Q ss_pred eEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCC------------------CCCHHHH
Q 000380 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDL------------------PETVASF 518 (1601)
Q Consensus 457 ~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~------------------p~s~~~y 518 (1601)
.+..+.+ +++..-|.++++.-..|.-+|+|||+++|..+.||++.+||.-+. |-|-.+-
T Consensus 599 ~vlpiYS---QLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA 675 (1042)
T KOG0924|consen 599 AVLPIYS---QLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANA 675 (1042)
T ss_pred EEEeehh---hCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccc
Confidence 3445555 589999999999888899999999999999999999999996443 4466777
Q ss_pred HHHhhcC-CCCCCeEEE-EEeC
Q 000380 519 IQSRGRA-RMPQSEYAF-LVDS 538 (1601)
Q Consensus 519 iQr~GRA-R~g~s~~vi-lv~~ 538 (1601)
-||.||| |.| .|.++ ++++
T Consensus 676 ~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 676 DQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred hhhccccCCCC-Ccceeeehhh
Confidence 8999998 554 56666 6654
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=110.38 Aligned_cols=68 Identities=35% Similarity=0.385 Sum_probs=61.7
Q ss_pred chhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHH
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCL 1594 (1601)
Q Consensus 1521 ~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l 1594 (1601)
|||+.|+|+||+++|..|.|++....|+.|.+.|+|+|.|+ +...+.|.|.| ||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~-----~~~~~~g~g~s-Kk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVG-----GKITGEGEGSS-KKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEEC-----CEEEEEeecCC-HHHHHHHHHHHHHHhC
Confidence 68999999999999999999998889999999999999994 24666899998 9999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-09 Score=139.84 Aligned_cols=120 Identities=21% Similarity=0.296 Sum_probs=79.9
Q ss_pred HHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEE
Q 000380 410 LRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLV 489 (1601)
Q Consensus 410 ~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLV 489 (1601)
..+.+.+.......+++++||+.+....+.+++.|........+ .+.. . | ++...|.+++++|++++-.||+
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~---~ll~-Q-g---~~~~~r~~l~~~F~~~~~~iLl 809 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGY---VLLA-Q-G---VSSGSRARLTKQFQQFDKAILL 809 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCc---eEEe-c-C---CCCCCHHHHHHHHHhcCCeEEE
Confidence 34444444433334568999999999999999998754221100 0111 1 1 2223467899999998888999
Q ss_pred EecccccCccCCC--ccEEEEcCCCC----C--------------------------HHHHHHHhhcC-CCCC-CeEEEE
Q 000380 490 ATKVGEEGLDIQT--CCLVIRFDLPE----T--------------------------VASFIQSRGRA-RMPQ-SEYAFL 535 (1601)
Q Consensus 490 aT~vleeGIDip~--~~~VI~fd~p~----s--------------------------~~~yiQr~GRA-R~g~-s~~vil 535 (1601)
+|..+.||||+|+ +.+||...+|. + ...+.|.+||. |..+ .|.+++
T Consensus 810 G~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~i 889 (928)
T PRK08074 810 GTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFV 889 (928)
T ss_pred ecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEE
Confidence 9999999999998 57888766553 2 23456888886 7764 455555
Q ss_pred Ee
Q 000380 536 VD 537 (1601)
Q Consensus 536 v~ 537 (1601)
++
T Consensus 890 lD 891 (928)
T PRK08074 890 LD 891 (928)
T ss_pred ec
Confidence 54
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-09 Score=130.50 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH---HcCCcEE
Q 000380 58 IARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE---SIGFKVR 134 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~---~~~l~v~ 134 (1601)
.|++-|.-..-..+ +.-|+-+.||.|||++|.+++.. ..+ .++.|-+++|+--||.|-++.+.. ++|++|+
T Consensus 78 r~ydvQlig~l~Ll-~G~VaEM~TGEGKTLvA~l~a~l--~AL---~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg 151 (764)
T PRK12326 78 RPFDVQLLGALRLL-AGDVIEMATGEGKTLAGAIAAAG--YAL---QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVG 151 (764)
T ss_pred CcchHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHHH--HHH---cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 45666766665544 45578999999999999999842 222 366799999999999997777765 4589999
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHH-HHHhcc------ccCccceeEEEEecCcccc
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHR------FIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~-~~l~~~------~~~l~~i~llI~DEaH~~~ 192 (1601)
.+.++.+...++..+ .+||+.+|..-|- +.|+.. ..-...+.+.||||++.++
T Consensus 152 ~i~~~~~~~err~aY-----~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 152 WITEESTPEERRAAY-----ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EECCCCCHHHHHHHH-----cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999887644333222 4899999976553 233322 1124568899999999884
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=124.24 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=64.4
Q ss_pred CcccCchhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHH
Q 000380 1516 GLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1516 ~~~~~~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~ 1595 (1601)
+|...|||+.|||+||+++... |..+.+.||+|.|.|++.|.|+ |..+. +|.|+| ||+|||.||+.||..|.
T Consensus 105 d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~----g~~~g-~G~G~S-KKeAEQ~AAk~AL~~L~ 176 (183)
T PHA03103 105 SWKDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIIS----GIKFK-PAIGST-KKEAKNNAAKLAMDKIL 176 (183)
T ss_pred ccccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEEC----CEEEE-EeeeCC-HHHHHHHHHHHHHHHHH
Confidence 4556799999999999998764 5556789999999999999995 43444 899999 99999999999999997
Q ss_pred hcCC
Q 000380 1596 REGY 1599 (1601)
Q Consensus 1596 ~~~~ 1599 (1601)
..-.
T Consensus 177 ~~~~ 180 (183)
T PHA03103 177 NYVI 180 (183)
T ss_pred hccc
Confidence 6543
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=138.52 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH---cCCcEEE
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGFKVRT 135 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~---~~l~v~~ 135 (1601)
|.+.|.-.- .++.+.-|+-+.||.|||++|.+++.. ..+ .++.|-+++|+--||.|.++.+..+ +|++|+.
T Consensus 83 ~ydVQliGg-~~Lh~G~iaEM~TGEGKTLvA~l~a~l--~al---~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 83 HFDVQLIGG-MTLHEGKIAEMRTGEGKTLVGTLAVYL--NAL---SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred cchhHHHhh-hHhccCccccccCCCCChHHHHHHHHH--HHH---cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 344454332 234478899999999999999998832 222 3677999999999999988888765 4899999
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHHH-HHHhccc------cCccceeEEEEecCcccc
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRF------IKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~-~~l~~~~------~~l~~i~llI~DEaH~~~ 192 (1601)
++|+.+...++..+ .++|+++|...|- +.|.... .-...+.++||||+|.++
T Consensus 157 i~~~~~~~err~~Y-----~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 157 VTPFQPPEEKRAAY-----AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ECCCCCHHHHHHHh-----cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99887654443333 3899999988762 3333221 113778999999999995
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-11 Score=106.35 Aligned_cols=67 Identities=37% Similarity=0.442 Sum_probs=59.8
Q ss_pred hhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHH
Q 000380 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1522 ~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~ 1595 (1601)
||+.|+|+||+++| .|.|++....|+.|.+.|+|+|.|+ +...+.|.|.| ||+||+.||+.||..|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~-----~~~~~~g~g~s-Kk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVG-----GEYTGEGEGSS-KKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEEC-----CEEEEEeccCC-HHHHHHHHHHHHHHhcC
Confidence 57899999999999 7999998778999999999999994 24555899999 99999999999999873
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=133.94 Aligned_cols=143 Identities=21% Similarity=0.298 Sum_probs=88.0
Q ss_pred HHHHHHhcc-CEEEEecCchhHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCChhHHHHHHHHHHHHcCC---cEEE---E
Q 000380 65 ELCKKAMEE-NIIVYLGTGCGKTHIAVLLIYELAHLI-RKPQKSICIFLAPTVALVQQQAKVIEESIGF---KVRT---F 136 (1601)
Q Consensus 65 e~~~~~l~~-n~Iv~~~TGsGKTlia~l~i~~l~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l---~v~~---~ 136 (1601)
++.+++.++ -+|||+.||||||.+.-..+.+...-. ..+.+..+=|--|.+.-|.-.+++...-++. .|+. |
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 344554443 379999999999976555443311100 1122456778889988777777766654432 2322 2
Q ss_pred eCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH-----------
Q 000380 137 CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD----------- 205 (1601)
Q Consensus 137 ~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~----------- 205 (1601)
.|..+ ....|.+||.++|++-+.+.| .+...+.||+||||.-. .|..|+-.
T Consensus 343 d~ti~------------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERS-----vnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 343 DGTIG------------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERS-----VNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred ccccC------------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhcc-----chHHHHHHHHHHHHHHHHH
Confidence 22211 236799999999999888765 47889999999999853 23333221
Q ss_pred HcCCCC-CCCCEEEEEecccc
Q 000380 206 FYKPDI-MKVPRIFGMTASPV 225 (1601)
Q Consensus 206 ~~~~~~-~~~p~ilgLTATP~ 225 (1601)
++.... .+.-+.+.||||..
T Consensus 405 ~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEE
Confidence 222111 22346888999984
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-11 Score=130.84 Aligned_cols=70 Identities=36% Similarity=0.419 Sum_probs=65.3
Q ss_pred chhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHHhcC
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1521 ~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~~~~ 1598 (1601)
.++|.|||+|.|++.+ |.|++.+++||+|.+.|+|.|+|+ .+.+.|+|++ ||.||++||..+|..|+..-
T Consensus 39 S~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg------~~~a~GeG~s-KK~AKh~AA~~~L~~lk~l~ 108 (339)
T KOG3732|consen 39 SPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVG------EITATGEGKS-KKLAKHRAAEALLKELKKLP 108 (339)
T ss_pred ChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEe------eeEEecCCCc-hhHHHHHHHHHHHHHHhcCC
Confidence 6789999999999985 799999999999999999999995 6888999999 99999999999999998753
|
|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-11 Score=115.21 Aligned_cols=87 Identities=30% Similarity=0.387 Sum_probs=70.9
Q ss_pred cccccCcEEEeccCCeEEEEEeecCCCCCCCCCCCC--CCCChhhhhhhhcCccccCCCCCeEEeeecccccccccCCcc
Q 000380 874 ESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDS--DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKL 951 (1601)
Q Consensus 874 ~~~~~~~vV~~~~~~~~y~v~~i~~d~~p~s~~~~~--~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL~~~~~ 951 (1601)
.+++.+.+|+++|+++.|.|++|+++++|.|.|+.. ...||.+||+++||+.+.+++||||.+....+-.
T Consensus 25 ~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~~~-------- 96 (117)
T cd02845 25 EKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRRDP-------- 96 (117)
T ss_pred HHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCccccCCCCcEEeecccccc--------
Confidence 355778999999999999999999999999999754 3569999999999999999999999987443210
Q ss_pred CCcccccccccccccccccccc
Q 000380 952 EDSESHELEEYFDDLPPELCQL 973 (1601)
Q Consensus 952 ~~~~~~~~~~~~~~L~PElc~~ 973 (1601)
.......++||||||.+
T Consensus 97 -----~~~~~~~iyL~pElC~l 113 (117)
T cd02845 97 -----RGGEKEPIYLIPELCFL 113 (117)
T ss_pred -----CCCCCcEEEEchHHhhh
Confidence 11133458899999986
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=107.17 Aligned_cols=68 Identities=44% Similarity=0.677 Sum_probs=62.4
Q ss_pred EEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCC
Q 000380 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMP 528 (1601)
Q Consensus 458 ~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g 528 (1601)
+..+|+ +++.++|.++++.|++|...+||+|+++++|+|+|.++.||.+++|++...|.|++||+ |.|
T Consensus 14 ~~~~~~---~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 14 VARLHG---GLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred EEEEEC---CCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 344555 58999999999999999999999999999999999999999999999999999999997 765
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-10 Score=102.27 Aligned_cols=66 Identities=36% Similarity=0.453 Sum_probs=54.2
Q ss_pred hhHHHHHHHHhCCCCCCceeEeeccCCCC-CcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHH
Q 000380 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSH-LKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCL 1594 (1601)
Q Consensus 1522 ~~~~L~e~~~~~~~~~p~y~~~~~~g~~h-~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l 1594 (1601)
||+.|+|+|+++++.+|.|.. ...|++| .+.|.|+|.|+ | ...+.|.|+| ||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~i~----~-~~~~~g~g~s-Kk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYI-EEEGPSHHRPRFICTVYID----G-KEYGEGEGSS-KKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-EEESSSSSSEEEEEEEEET----T-EEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEE-EEeCCCCCCceEEEEEEEC----C-EEEeEeccCC-HHHHHHHHHHHHHHhC
Confidence 689999999999988766655 5555554 48999999993 3 4555899998 9999999999999987
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=134.34 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC
Q 000380 405 FSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE 484 (1601)
Q Consensus 405 ~s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~ 484 (1601)
.+.|+..+..+|.........++|||++-...+..+...|...+. ..+.+.| .|+...|.+.+..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~--------~~~~~~g--~~~~~~r~~s~~~~~~~~ 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGF--------VFLRYDG--EMLMKIRTKSFTDFPCDP 589 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhccc--------ccchhhh--hhHHHHHHhhhcccccCc
Confidence 377888888888743222224999999999999888887774322 2222333 689999999999999654
Q ss_pred -c-cEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEE
Q 000380 485 -L-NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFL 535 (1601)
Q Consensus 485 -~-~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vil 535 (1601)
. -.|+|..++..|+++..+++|+..|+-||+...-|.+-|| |.||.+-|.+
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 3 3567889999999999999999999999999999999999 9999987653
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-08 Score=124.93 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHH-HHHHHHhcCC
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMK-SILEKFRSGE 484 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~-~~l~~Fr~g~ 484 (1601)
..|..++++-+... ...+.++||.|.++...+.|+++|...+.. ...+.. . ..+++ +++. +.|.
T Consensus 409 ~~K~~Aii~ei~~~-~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~----h~vLNA-------k-~~e~EA~IIa--~AG~ 473 (925)
T PRK12903 409 HAKWKAVVKEVKRV-HKKGQPILIGTAQVEDSETLHELLLEANIP----HTVLNA-------K-QNAREAEIIA--KAGQ 473 (925)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHHCCCC----ceeecc-------c-chhhHHHHHH--hCCC
Confidence 46777777766654 246889999999999999999999986543 122211 1 11222 3443 5564
Q ss_pred -ccEEEEecccccCccCCCcc--------EEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEE
Q 000380 485 -LNLLVATKVGEEGLDIQTCC--------LVIRFDLPETVASFIQSRGRA-RMPQSEYAFLV 536 (1601)
Q Consensus 485 -~~vLVaT~vleeGIDip~~~--------~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv 536 (1601)
-.|.|||+++++|.||.--. +||....+.|.+---|-+||| |.|..|..-|+
T Consensus 474 ~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 474 KGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred CCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 57999999999999996433 899999999999999999995 99999977543
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-08 Score=119.71 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=90.7
Q ss_pred CCceEEEEecchhhHHHHHHHHHhccccc----------cccc-ceEEeccCCCCcCCHHHHHHHHHHHhcCC-c--cEE
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLA----------SWRC-HFLVGVNAGLKSMSRNAMKSILEKFRSGE-L--NLL 488 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~----------~~~~-~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~-~--~vL 488 (1601)
-+.++|||.+...+...|.++|.+..... .|.. .....+.| ..+..+|++.+++|.+.. + -+|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG---~t~a~~rekLinqfN~e~~lsWlfl 794 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDG---TTSAADREKLINQFNSEPGLSWLFL 794 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccC---CcccchHHHHHHhccCCCCceeeee
Confidence 46899999999999999999998763210 0111 11112222 356788999999998754 2 478
Q ss_pred EEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEE--eCCCHhHHHHHHH
Q 000380 489 VATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLV--DSGNQRELDLIKN 549 (1601)
Q Consensus 489 VaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv--~~~~~~~~~~i~~ 549 (1601)
++|.++.-|||+-..+-+|.||..|++.--.|.+-|. |.||.+-++++ ..+...+.+.+.+
T Consensus 795 lstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydR 858 (1387)
T KOG1016|consen 795 LSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDR 858 (1387)
T ss_pred ehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHH
Confidence 8999999999999999999999999999999999997 99998755432 3344444444443
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=133.09 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHH----HHHHHHcCCcEE
Q 000380 61 KYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQA----KVIEESIGFKVR 134 (1601)
Q Consensus 61 ~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~----~~l~~~~~l~v~ 134 (1601)
+.|.+++....+ .|++|++|+|||||.+|-+++.. .....++++++|.-+.+.-++ ..|...+|+.+.
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 467777777766 78999999999999999887632 334568999999988776544 455555688999
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChH------HHHHHHHcC
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPY------AKIMKDFYK 208 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~------~~i~~~~~~ 208 (1601)
.++|+....- +.++..+|+|+||+.+-.+ . ...++++.|.||.|.+++.....| +.|...+
T Consensus 1220 ~l~ge~s~~l------kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~-- 1286 (1674)
T KOG0951|consen 1220 KLTGETSLDL------KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQL-- 1286 (1674)
T ss_pred ecCCccccch------HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHH--
Confidence 9988876422 1234589999999998544 3 567899999999999963222222 2222222
Q ss_pred CCCCCCCEEEEEeccc
Q 000380 209 PDIMKVPRIFGMTASP 224 (1601)
Q Consensus 209 ~~~~~~p~ilgLTATP 224 (1601)
.+.-|+++||.+.
T Consensus 1287 ---~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1287 ---EKKIRVVALSSSL 1299 (1674)
T ss_pred ---HhheeEEEeehhh
Confidence 2346788887665
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.4e-08 Score=123.05 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhc---c----C--EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000380 61 KYQLELCKKAME---E----N--IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131 (1601)
Q Consensus 61 ~yQ~e~~~~~l~---~----n--~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l 131 (1601)
.+|-.+++.+.. + . ++-.+.||+|||++=.-.+. .+.....+.|..|-.-.|.|.-|.-.++++-+++
T Consensus 411 ~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy---aLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 411 RWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY---ALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred chHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH---HhCCCCCCceEEEEccccceeccchHHHHHhcCC
Confidence 689999888766 1 1 46778999999997665543 2333344568888889999999999999887654
Q ss_pred ---cEEEEeCCCCc------------------C--------Cc----hhhHHhh------------------hccCeEEE
Q 000380 132 ---KVRTFCGGSKR------------------L--------KS----HCDWEKE------------------IDQYEVLV 160 (1601)
Q Consensus 132 ---~v~~~~G~~~~------------------~--------~~----~~~~~~~------------------~~~~~VlV 160 (1601)
...++.|+... . +. .-.|... +-...|+|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 34445443210 0 00 0011110 11257999
Q ss_pred EcHHHHHHHHh--c-ccc--Cccc--eeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 161 MIPQILLYCLY--H-RFI--KMEL--IALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 161 ~Tp~~l~~~l~--~-~~~--~l~~--i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
||++.++.... + +.. .+-. =+.|||||+|.+- ...+.. +..+.+....--.+++.||||.
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD---~~~~~~-L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE---PEDLPA-LLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC---HHHHHH-HHHHHHHHHHcCCCEEEEeCCC
Confidence 99998886552 2 111 1112 2689999999972 222222 2222221111125689999997
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=133.57 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=79.9
Q ss_pred HHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCc-cEE
Q 000380 410 LRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL-NLL 488 (1601)
Q Consensus 410 ~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~-~vL 488 (1601)
..+...+.......+.+++||+.+....+.+.+.+...... ..+..++ ...+.+.+++|+.+.- -++
T Consensus 465 ~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~------~~v~~q~------~~~~~~~l~~f~~~~~~~~l 532 (654)
T COG1199 465 AKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERST------LPVLTQG------EDEREELLEKFKASGEGLIL 532 (654)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCcc------ceeeecC------CCcHHHHHHHHHHhcCCeEE
Confidence 33444443332334458999999999999999988864321 1222222 2334578899987655 899
Q ss_pred EEecccccCccCCC--ccEEEEcCCCC------------------------------CHHHHHHHhhcC-CCC-CCeEEE
Q 000380 489 VATKVGEEGLDIQT--CCLVIRFDLPE------------------------------TVASFIQSRGRA-RMP-QSEYAF 534 (1601)
Q Consensus 489 VaT~vleeGIDip~--~~~VI~fd~p~------------------------------s~~~yiQr~GRA-R~g-~s~~vi 534 (1601)
|+|..+.||||+|+ +.+||...+|. ......|.+||. |.. ..|.++
T Consensus 533 v~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 533 VGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 99999999999998 67788766652 346678999997 654 456777
Q ss_pred EEeC
Q 000380 535 LVDS 538 (1601)
Q Consensus 535 lv~~ 538 (1601)
+++.
T Consensus 613 llD~ 616 (654)
T COG1199 613 LLDK 616 (654)
T ss_pred Eecc
Confidence 7653
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-09 Score=104.02 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=78.8
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhhh
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI 153 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 153 (1601)
-.+|-+.+|+|||.-.+--+ +.+.++ .+.++|+|.||+.++....+.++. ..+..-+.-... ...
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~--~~~~i~--~~~rvLvL~PTRvva~em~~aL~~---~~~~~~t~~~~~--------~~~ 70 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEI--VREAIK--RRLRVLVLAPTRVVAEEMYEALKG---LPVRFHTNARMR--------THF 70 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHH--HHHHHH--TT--EEEEESSHHHHHHHHHHTTT---SSEEEESTTSS------------
T ss_pred eeEEecCCCCCCcccccHHH--HHHHHH--ccCeEEEecccHHHHHHHHHHHhc---CCcccCceeeec--------ccc
Confidence 36889999999998544333 222222 367899999999999988887764 333222111110 112
Q ss_pred ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccccCC
Q 000380 154 DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 154 ~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~ 227 (1601)
.+.-|-|+|+..+...+.. .....++++||+||||-.- ...-..+..+..+-. ...-+++.|||||--.
T Consensus 71 g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~D-p~sIA~rg~l~~~~~---~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTD-PTSIAARGYLRELAE---SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--S-HHHHHHHHHHHHHHH---TTS-EEEEEESS-TT-
T ss_pred CCCcccccccHHHHHHhcC-cccccCccEEEEeccccCC-HHHHhhheeHHHhhh---ccCeeEEEEeCCCCCC
Confidence 3467899999999887665 5567899999999999962 112234455555522 1234789999999543
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-07 Score=120.85 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=80.7
Q ss_pred HHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhc----CCc
Q 000380 410 LRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRS----GEL 485 (1601)
Q Consensus 410 ~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~----g~~ 485 (1601)
..+.+.|.++.......+|||.++-...+.+...+...+....+.....+-.-+. ++ .++.+++++|+. |.-
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~--~~--~~~~~~l~~f~~~~~~~~g 583 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK--DA--QETSDALERYKQAVSEGRG 583 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC--Cc--chHHHHHHHHHHHHhcCCc
Confidence 4455555444333456899999999998888888776433211110011111111 11 466889999965 455
Q ss_pred cEEEEe--cccccCccCCC--ccEEEEcCCCC-CH------------------------------HHHHHHhhcC-CCCC
Q 000380 486 NLLVAT--KVGEEGLDIQT--CCLVIRFDLPE-TV------------------------------ASFIQSRGRA-RMPQ 529 (1601)
Q Consensus 486 ~vLVaT--~vleeGIDip~--~~~VI~fd~p~-s~------------------------------~~yiQr~GRA-R~g~ 529 (1601)
.||+|+ ..+.||||+++ +..||..++|. ++ ....|.+||+ |..+
T Consensus 584 avL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 584 AVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred eEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 699999 88999999999 88999998885 11 2346999997 8765
Q ss_pred C-eEEEEEe
Q 000380 530 S-EYAFLVD 537 (1601)
Q Consensus 530 s-~~vilv~ 537 (1601)
. |.+++++
T Consensus 664 D~G~iillD 672 (705)
T TIGR00604 664 DYGSIVLLD 672 (705)
T ss_pred ceEEEEEEe
Confidence 4 5666665
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=107.79 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=87.4
Q ss_pred HHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCC
Q 000380 62 YQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGS 140 (1601)
Q Consensus 62 yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~ 140 (1601)
|+.+.++...+ +-++++++||||||.+.--...+.. . +...-+..--|.+.-+.+.+.+....+++..+.=.|..
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~--~--~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGys 126 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE--L--SHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYS 126 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH--H--hhccceeecCchHHHHHHHHHHHHHHhccccchhcccc
Confidence 34444444444 5578999999999965433332211 1 11234666779999999999888888777666655553
Q ss_pred CcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEE
Q 000380 141 KRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGM 220 (1601)
Q Consensus 141 ~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgL 220 (1601)
-..++-..-+ .-.-.||.++|++-..... -+..++.||+||||.-.- .....-.+++...... +--+++.|
T Consensus 127 IrfEdC~~~~-----T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahERtl-ATDiLmGllk~v~~~r--pdLk~vvm 197 (699)
T KOG0925|consen 127 IRFEDCTSPN-----TLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHERTL-ATDILMGLLKEVVRNR--PDLKLVVM 197 (699)
T ss_pred ccccccCChh-----HHHHHhcchHHHHHHhhCc-ccccccEEEechhhhhhH-HHHHHHHHHHHHHhhC--CCceEEEe
Confidence 3221100000 0122467777665433322 367899999999998531 1122334455544333 23578999
Q ss_pred eccc
Q 000380 221 TASP 224 (1601)
Q Consensus 221 TATP 224 (1601)
|||.
T Consensus 198 Satl 201 (699)
T KOG0925|consen 198 SATL 201 (699)
T ss_pred eccc
Confidence 9997
|
|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.6e-10 Score=113.07 Aligned_cols=104 Identities=27% Similarity=0.350 Sum_probs=84.9
Q ss_pred cccccCcEEEeccCC--eEEEEEeecCCCCCCCCCCCC--CCCChhhhhhhhcCccccCCCCCeEEeeecccccccccCC
Q 000380 874 ESDVENSLVYATHKK--WFYLVTNIVFEKNGYSPYKDS--DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNR 949 (1601)
Q Consensus 874 ~~~~~~~vV~~~~~~--~~y~v~~i~~d~~p~s~~~~~--~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL~~~ 949 (1601)
.+.+.|..|++.|++ +.|.|.+|.++.++.+.|+.. ...|+.+||+.+||+++.+|+||+|.++...+.
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~~------- 98 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKKK------- 98 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT---SSTTSEEEEECSTTTT-------
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhcccccCCCCeEEeccCCCC-------
Confidence 467889999999998 899999999999999999665 567999999999999999999999998855421
Q ss_pred ccCCccccccccccccccccccccccccccHhHhhhcccCchHHHHHHH
Q 000380 950 KLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLEN 998 (1601)
Q Consensus 950 ~~~~~~~~~~~~~~~~L~PElc~~~~~~~~~~~~~~~~~lPsi~~r~~~ 998 (1601)
..+++|||||.+ .|++...++.....|++|+|.++
T Consensus 99 ------------~~~~lP~Elc~i--~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 99 ------------QPIYLPPELCFI--VPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp ------------TCEEEECCGEEE--ETTTBB-SS--HHHHHHHHHHHS
T ss_pred ------------ceEEEChhHhcc--cCCcHHHHhccHHHHHHHHHHHh
Confidence 346799999987 57899999999999999999875
|
It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A .... |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=113.59 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhc--CCccEEEEecccccCcc
Q 000380 422 QQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRS--GELNLLVATKVGEEGLD 499 (1601)
Q Consensus 422 ~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~--g~~~vLVaT~vleeGID 499 (1601)
.+|.+++-|.. .....+...+.+.+.. ++..+.| +++++.|..--..|.+ ++++||||||+.++|+|
T Consensus 356 k~GDCvV~FSk--k~I~~~k~kIE~~g~~---k~aVIYG------sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 356 KPGDCVVAFSK--KDIFTVKKKIEKAGNH---KCAVIYG------SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred CCCCeEEEeeh--hhHHHHHHHHHHhcCc---ceEEEec------CCCCchhHHHHHHhCCCCCccceEEeecccccccc
Confidence 35667777754 4455666666665432 3444433 5888888888889987 88999999999999999
Q ss_pred CCCccEEEEcCCC---------CCHHHHHHHhhcC-CCCCC---eEEEEEe
Q 000380 500 IQTCCLVIRFDLP---------ETVASFIQSRGRA-RMPQS---EYAFLVD 537 (1601)
Q Consensus 500 ip~~~~VI~fd~p---------~s~~~yiQr~GRA-R~g~s---~~vilv~ 537 (1601)
+ +++.||.+++. -+..+..|-.||| |.|.. |++..+.
T Consensus 425 L-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 425 L-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred c-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 9 88999988874 4678899999997 77532 4554443
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-06 Score=116.83 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHHhc-----------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 58 IARKYQLELCKKAME-----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
.+|-+|..++..+++ +..+|+--||||||+..+.....+... +..+.++|||.++.|-.|..++|.
T Consensus 248 ~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~ 324 (962)
T COG0610 248 YQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ 324 (962)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH
Confidence 355566655553322 248999999999999887776544333 556789999999999999999998
Q ss_pred HHcCCcEEEEeCCCCcCCchhhHHhhhc--cCeEEEEcHHHHHHHHhcc--ccCccceeEEEEecCccccccCCChHHHH
Q 000380 127 ESIGFKVRTFCGGSKRLKSHCDWEKEID--QYEVLVMIPQILLYCLYHR--FIKMELIALLIFDECHHAQVKSNHPYAKI 202 (1601)
Q Consensus 127 ~~~~l~v~~~~G~~~~~~~~~~~~~~~~--~~~VlV~Tp~~l~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~~~i 202 (1601)
.+-......- ...+.+.+.+.+. ...|+|+|-|.|-...... ...-.+=-++|+||||+. ........
T Consensus 325 ~~~~~~~~~~-----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~ 396 (962)
T COG0610 325 SFGKVAFNDP-----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKL 396 (962)
T ss_pred HHHHhhhhcc-----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHH
Confidence 8643211111 1122334444443 2489999999998877654 111223357999999997 33345555
Q ss_pred HHHHcCCCCCCCCEEEEEeccccCCCCC
Q 000380 203 MKDFYKPDIMKVPRIFGMTASPVVGKGA 230 (1601)
Q Consensus 203 ~~~~~~~~~~~~p~ilgLTATP~~~~~~ 230 (1601)
|+..+. .-..+|+|+||+.....
T Consensus 397 ~~~~~~-----~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 397 LKKALK-----KAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHHhc-----cceEEEeeCCccccccc
Confidence 555433 25689999999876554
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=123.66 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=85.9
Q ss_pred HHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc------CC
Q 000380 63 QLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI------GF 131 (1601)
Q Consensus 63 Q~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~------~l 131 (1601)
|.++++.+.+ +.+++.++||+|||++|++++.... . ...++++||++||++|..|+.+.+.... ++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~--~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i 78 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTML--K-ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPV 78 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHH--H-hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCe
Confidence 5565555444 5689999999999999999985432 2 2235789999999999999998776543 34
Q ss_pred cEEEEeCCCCcC--------------------------------------------------------------Cchh--
Q 000380 132 KVRTFCGGSKRL--------------------------------------------------------------KSHC-- 147 (1601)
Q Consensus 132 ~v~~~~G~~~~~--------------------------------------------------------------~~~~-- 147 (1601)
++..+.|..+.. ....
T Consensus 79 ~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~ 158 (636)
T TIGR03117 79 QAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVT 158 (636)
T ss_pred eEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhh
Confidence 455544432200 0000
Q ss_pred -------------hHHhh---hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 148 -------------DWEKE---IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 148 -------------~~~~~---~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
..++. ...++|+|+++..|...+..+.-.+...+.+||||||++.
T Consensus 159 ~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~ 219 (636)
T TIGR03117 159 LAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFE 219 (636)
T ss_pred ccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchH
Confidence 01111 3567999999999987665443245668999999999994
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.2e-07 Score=114.21 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHH---HHHHcCCcEEE
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV---IEESIGFKVRT 135 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~---l~~~~~l~v~~ 135 (1601)
|++-|.-..- ++.++-|+-+.||-|||++|.+|+. ...+ .++.|-|++++..||.+-++. +-+++|+.|+.
T Consensus 77 ~ydvQlig~l-~L~~G~IaEm~TGEGKTL~a~l~ay--l~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 77 HFDVQLIGGL-VLNDGKIAEMKTGEGKTLVATLPAY--LNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred CCchHhhhhH-hhcCCccccccCCCCchHHHHHHHH--HHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 5555655432 3447889999999999999999973 2222 366789999999999985554 44568999999
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHHH-HHHhccc------cCccceeEEEEecCcccc
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRF------IKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~-~~l~~~~------~~l~~i~llI~DEaH~~~ 192 (1601)
+.++.+...++..+ .+||+.+|..-|- +.|+... .-...+.+.|+||++.++
T Consensus 151 i~~~~~~~err~aY-----~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 151 IQEGMSSEERKKNY-----LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eCCCCChHHHHHhc-----CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 98887654433333 4899999986443 3333221 124568899999999984
|
|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-08 Score=100.45 Aligned_cols=66 Identities=27% Similarity=0.304 Sum_probs=58.0
Q ss_pred CCChhHHHHHHHhhcCCCccccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1379 ~~~p~~~L~e~~~~~~~~~~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
..|||+.||||||+.+....|.. +.|.+.|++.|.|+|.. +++|.|+|||+|+++||+.||+.|..
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~-----~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKV-----VATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEE-----EEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 46999999999999877665433 77889999999999877 79999999999999999999999864
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-06 Score=106.83 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=86.2
Q ss_pred hHHHHHHHHH-HhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHH---HHHHHHHHcCCcEEE
Q 000380 60 RKYQLELCKK-AMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ---QAKVIEESIGFKVRT 135 (1601)
Q Consensus 60 R~yQ~e~~~~-~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q---~~~~l~~~~~l~v~~ 135 (1601)
|+|=.+++-. ++.+.-|.-+.||-|||++|.+|+. ...+ .|+.|-|+++.--||.. |...+-+++|+.|+.
T Consensus 85 r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpay--lnAL---~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSY--LNAL---TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHH--HHhh---cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 4443334332 3447789999999999999999973 2222 35668888999999987 555556678999999
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHH-----HHHHhcc--ccCccceeEEEEecCcccc
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQIL-----LYCLYHR--FIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l-----~~~l~~~--~~~l~~i~llI~DEaH~~~ 192 (1601)
+.++.....++.. -++||+.+|..-| .+.+... ..-...+.+.||||++.++
T Consensus 160 i~~~~~~~err~a-----Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 160 IQQDMSPEERKKN-----YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred ECCCCChHHHHHh-----cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9887765433322 2589999998877 3333221 1235678999999999984
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-08 Score=99.52 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhhhhhccc----CCCChhHHHHHHHhhcCCCccccc-----ccCCCeEEEEEEEecccCCeeEeEEEEe
Q 000380 1359 NTVWKIMLSFLDPILKFSN----LQLNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATN 1429 (1601)
Q Consensus 1359 ~~v~~~~~~~~~~~~~~~~----~~~~p~~~L~e~~~~~~~~~~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g 1429 (1601)
+.--.++.+++.+.+.... -.+||++.||||||+.+... ++. +.|.+.|++.|.|++.. +++|.|
T Consensus 84 ~~~~~~~~~l~~~~i~~~k~~d~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~-----~g~G~G 157 (183)
T PHA03103 84 EKSMREDNKSFSDTIPYKKIISWKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIK-----FKPAIG 157 (183)
T ss_pred chhHHHHHHHhhhhcchhhhhccccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEE-----EEEeee
Confidence 3444566666666543311 13799999999999987654 222 78899999999999987 799999
Q ss_pred CCHHHHHHHHHHHHHHHhhhc
Q 000380 1430 LSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1430 ~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
+|||+|++.||+.||+.|...
T Consensus 158 ~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 158 STKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998653
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=109.17 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCChhHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ---KSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~---~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
+.||+.|.++.+.+.+ +++|+.+|||+|||+++++++... +...+. +.+++|+++|.++..|....+++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~--~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTW--LRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHH--HHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3479999997776655 689999999999999999998432 222221 237999999999988876666553
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=109.17 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCChhHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ---KSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~---~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
+.||+.|.++.+.+.+ +++|+.+|||+|||+++++++... +...+. +.+++|+++|.++..|....+++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~--~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTW--LRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHH--HHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3479999997776655 689999999999999999998432 222221 237999999999988876666553
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.8e-08 Score=84.85 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=53.1
Q ss_pred hhHHHHHHHhhcCCCccccc-----ccCC-CeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHh
Q 000380 1382 PIRELLELCNSYDLDLQFPS-----LKKG-GKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKL 1447 (1601)
Q Consensus 1382 p~~~L~e~~~~~~~~~~~~~-----~~~~-~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1447 (1601)
|++.|+|+|++.++.++++. +.+. +.|.|+|.|++.. ++.|.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~-----~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKE-----YGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEE-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEE-----EeEeccCCHHHHHHHHHHHHHHhC
Confidence 78999999999999888764 2333 6899999998877 679999999999999999999876
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.1e-08 Score=85.44 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=52.6
Q ss_pred hhHHHHHHHhhcCCCccccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHh
Q 000380 1382 PIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKL 1447 (1601)
Q Consensus 1382 p~~~L~e~~~~~~~~~~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1447 (1601)
|++.|+|+|+++++.+.|.. +.+.+.|+|.|.|++.. +++|.|.|||+||+.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~-----~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEY-----TGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEE-----EEEeccCCHHHHHHHHHHHHHHhc
Confidence 78999999999998666554 34557999999998866 689999999999999999999887
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=83.64 Aligned_cols=62 Identities=27% Similarity=0.295 Sum_probs=51.3
Q ss_pred ChhHHHHHHHhhcCCC-ccccc-----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHh
Q 000380 1381 NPIRELLELCNSYDLD-LQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKL 1447 (1601)
Q Consensus 1381 ~p~~~L~e~~~~~~~~-~~~~~-----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1447 (1601)
||++.|+|+|+++++. +.|.. +.|.+.|+|.|.|++.. .++|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~-----~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKI-----TGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEE-----EEEeecCCHHHHHHHHHHHHHHhC
Confidence 6999999999998554 44433 34457899999998855 689999999999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-08 Score=114.20 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=74.2
Q ss_pred ccccCcEEEeccCCeEEEEEeecCCCCCCCCCCC-CCCCChhhhhhhhcCccccCCCCCeEEeeecccccccccCCccCC
Q 000380 875 SDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKD-SDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLED 953 (1601)
Q Consensus 875 ~~~~~~vV~~~~~~~~y~v~~i~~d~~p~s~~~~-~~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL~~~~~~~ 953 (1601)
..+.+.+|.|.|||+.|.+++|+++.+|.|.|.. +...||.|||+++|++++++.+||+|--++-.++.
T Consensus 282 ~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dgeIs~veYyk~qYni~I~dl~QPlliS~~k~K~~---------- 351 (845)
T KOG1042|consen 282 KNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDGEISFVEYYKKQYNIEITDLNQPLLISEPKDKRP---------- 351 (845)
T ss_pred HHhcceEEEEecCCceeeeeccccCcCccceeeecCceeeHhHHHHHhcCeEEeeCCcceEeccCcccCC----------
Confidence 4567889999999999999999999999999954 45679999999999999999999998755444321
Q ss_pred ccccccccccccccccccccccccccHhH
Q 000380 954 SESHELEEYFDDLPPELCQLKIIGFSKDI 982 (1601)
Q Consensus 954 ~~~~~~~~~~~~L~PElc~~~~~~~~~~~ 982 (1601)
....+....|+||||.+ .++-..+
T Consensus 352 ---~g~~~q~~~lIPELc~~--TGLtd~m 375 (845)
T KOG1042|consen 352 ---KGEPPQLAMLIPELCFL--TGLTDEM 375 (845)
T ss_pred ---CCCCccceeeehhhhhc--cCCcHHH
Confidence 12235567899999986 4555444
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6e-07 Score=107.33 Aligned_cols=136 Identities=23% Similarity=0.241 Sum_probs=94.3
Q ss_pred ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhcCCCCCCccHHHHhhcCccccccccccCCCCc
Q 000380 1402 LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPI 1481 (1601)
Q Consensus 1402 ~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 1481 (1601)
+.|.+.|.+.|.|++.. +. +|.|+..||+.|++.+....--. .. ++..+...
T Consensus 20 p~~~p~~~~~~~v~~~~------~~-----~k~~~~~~a~~~~~~~~~~~~~~-------~~----------~~~~~~~~ 71 (542)
T KOG2777|consen 20 PVHAPLFPFSVEVNGQE------FP-----KKKAKQRAAEKALRVFLQFPEAH-------LS----------MGGTEGVN 71 (542)
T ss_pred CCCCCcccceEEecccc------cc-----cccccchhhhHHHHHHhhcCCcc-------cc----------cCCCCccc
Confidence 77889999999999887 12 99999999999999987532110 00 00000000
Q ss_pred cccCCchhhhhhccccCCCCCCCCCCCCCccccCCcccCchhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEE
Q 000380 1482 NVVAADDNVFEKLKISEPQGGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVE 1561 (1601)
Q Consensus 1482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~ 1561 (1601)
........+ .+...+....|+++.|+|+.+ -+.|+++.+.||.|.+.|.|.|.|+
T Consensus 72 ~~~~~~~~~--------------------~~~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vd 126 (542)
T KOG2777|consen 72 EDLTSDQAD--------------------AFLSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVD 126 (542)
T ss_pred cccchhhhH--------------------HHHhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEEC
Confidence 000000000 001111124599999999998 4789999999999999999999996
Q ss_pred eecCCceEEEcCCCCcchhHHHHHHHHHHHHHHHhc
Q 000380 1562 IEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLERE 1597 (1601)
Q Consensus 1562 ~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~~~ 1597 (1601)
|..+. |.|.| ||+||++||+.||+.|...
T Consensus 127 ----g~~~~--~~~~s-Kk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 127 ----GRWFE--GGGRS-KKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred ----CEEcc--CCCcc-hHHHHHHHHHHHHHHHHhc
Confidence 44555 44888 9999999999999999764
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=111.63 Aligned_cols=63 Identities=27% Similarity=0.281 Sum_probs=50.4
Q ss_pred hhhhhHHHHHHHHHHhc---c-------CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHH
Q 000380 56 KQIARKYQLELCKKAME---E-------NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQA 122 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~---~-------n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 122 (1601)
.+..|+-|.++...+.+ . ..+|-||||+|||+.|++|+...+. ..+++++|-+.|++|-+|..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~----~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR----AEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH----HcCCeEEEEcCCHHHHHHHH
Confidence 57899999998776654 2 3789999999999999999843322 23678999999999998864
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=101.22 Aligned_cols=133 Identities=15% Similarity=0.196 Sum_probs=80.7
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCC-cEEEEeCCCCcCCchhhHHhh
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF-KVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l-~v~~~~G~~~~~~~~~~~~~~ 152 (1601)
=.+|.+|+|+|||..-+-.+ ...+. .+..++|++..+++|+.+.+..++.. ++ ....|.......-..
T Consensus 51 V~vVRSpMGTGKTtaLi~wL---k~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~-~l~gFv~Y~d~~~~~i~~------ 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWL---KDALK-NPDKSVLVVSHRRSLTKSLAERFKKA-GLSGFVNYLDSDDYIIDG------ 119 (824)
T ss_pred eEEEECCCCCCcHHHHHHHH---HHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhc-CCCcceeeeccccccccc------
Confidence 36899999999997655443 22222 34678999999999999999999764 22 222222221110100
Q ss_pred hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHc------CCCCCCCCEEEEEeccc
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFY------KPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~------~~~~~~~p~ilgLTATP 224 (1601)
...+-+++..+.|.+.... .+.++++||+||+-.+. +|-|..-|+... .......++++.|-|+.
T Consensus 120 -~~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL---~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 120 -RPYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVL---NQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred -cccCeEEEEehhhhhcccc---cccccCEEEEehHHHHH---HHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 1245666677777654321 35678999999998775 233433333210 00113468999999886
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=100.67 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCC-
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE- 484 (1601)
Q Consensus 406 s~K~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~- 484 (1601)
..|..++++-+... ...+.++||-+.++...+.|+++|...+..+ ..+..- ...++ .+++. +.|.
T Consensus 611 ~eK~~Aii~ei~~~-~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H----~VLNAK------~h~~E-AeIVA--~AG~~ 676 (1112)
T PRK12901 611 REKYNAVIEEITEL-SEAGRPVLVGTTSVEISELLSRMLKMRKIPH----NVLNAK------LHQKE-AEIVA--EAGQP 676 (1112)
T ss_pred HHHHHHHHHHHHHH-HHCCCCEEEEeCcHHHHHHHHHHHHHcCCcH----HHhhcc------chhhH-HHHHH--hcCCC
Confidence 46777777766654 3578899999999999999999999865421 112111 11111 23333 3444
Q ss_pred ccEEEEecccccCccCC--------CccEEEEcCCCCCHHHHHHHhhcC-CCCCCeEEEEE
Q 000380 485 LNLLVATKVGEEGLDIQ--------TCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLV 536 (1601)
Q Consensus 485 ~~vLVaT~vleeGIDip--------~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv 536 (1601)
-.|-|||+++++|-||. +==+||--..+.|.+---|-+||| |.|..|..-|+
T Consensus 677 GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 677 GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 46899999999999996 223788889999999999999995 99999877543
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.5e-06 Score=91.54 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=84.6
Q ss_pred hhhhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH---HHcCCcE
Q 000380 57 QIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE---ESIGFKV 133 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~---~~~~l~v 133 (1601)
..|++-|.-+.-.. .++-|+.+.||=|||+++.++.. ...+ .|+.|=|++...-|+..-++.++ +++|+++
T Consensus 76 ~~p~~vQll~~l~L-~~G~laEm~TGEGKTli~~l~a~--~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv 149 (266)
T PF07517_consen 76 LRPYDVQLLGALAL-HKGRLAEMKTGEGKTLIAALPAA--LNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSV 149 (266)
T ss_dssp ----HHHHHHHHHH-HTTSEEEESTTSHHHHHHHHHHH--HHHT---TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--E
T ss_pred CcccHHHHhhhhhc-ccceeEEecCCCCcHHHHHHHHH--HHHH---hcCCcEEEeccHHHhhccHHHHHHHHHHhhhcc
Confidence 44677777766544 45669999999999999998873 2222 36678888998999987665555 4579999
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHH-HHHhcccc------CccceeEEEEecCcccc
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFI------KMELIALLIFDECHHAQ 192 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~-~~l~~~~~------~l~~i~llI~DEaH~~~ 192 (1601)
+.++++.....++..+ .++|+.+|...|. +.|+.... ....++++|||||+.++
T Consensus 150 ~~~~~~~~~~~r~~~Y-----~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 150 GIITSDMSSEERREAY-----AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEETTTEHHHHHHHH-----HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccCccccCHHHHHHHH-----hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999987643333333 3789999998876 34443211 14678999999999884
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=102.51 Aligned_cols=143 Identities=22% Similarity=0.290 Sum_probs=86.0
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH-----HHc-----C--CcEEEEeCCC
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE-----ESI-----G--FKVRTFCGGS 140 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~-----~~~-----~--l~v~~~~G~~ 140 (1601)
.|+.+.|+||+|||++|+-.|.++.... .-.++||+||+.+..+...+.+. .++ + +...++.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 4789999999999999999987654433 34679999999999888776654 222 1 3444555433
Q ss_pred CcCCc----hhhHHhhhc-------cCeEEEEcHHHHHHHHh----------ccc-cCccce----eEEEEecCcccccc
Q 000380 141 KRLKS----HCDWEKEID-------QYEVLVMIPQILLYCLY----------HRF-IKMELI----ALLIFDECHHAQVK 194 (1601)
Q Consensus 141 ~~~~~----~~~~~~~~~-------~~~VlV~Tp~~l~~~l~----------~~~-~~l~~i----~llI~DEaH~~~~~ 194 (1601)
+.... ......... +.+|+|+|.|.|..... .+. ..++.+ -.||+||.|++-.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~- 215 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR- 215 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-
Confidence 11110 111111111 35899999998875321 111 122222 4799999999942
Q ss_pred CCChHHHHHHHHcCCCCCCCCEEEEEeccccC
Q 000380 195 SNHPYAKIMKDFYKPDIMKVPRIFGMTASPVV 226 (1601)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~ 226 (1601)
+...+..| ..+ +.-.+|..|||-..
T Consensus 216 ~~k~~~~i-~~l------npl~~lrysAT~~~ 240 (986)
T PRK15483 216 DNKFYQAI-EAL------KPQMIIRFGATFPD 240 (986)
T ss_pred chHHHHHH-Hhc------CcccEEEEeeecCC
Confidence 12245444 333 11246778999754
|
|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-06 Score=82.72 Aligned_cols=81 Identities=27% Similarity=0.340 Sum_probs=62.7
Q ss_pred cccccCcEEEeccC--CeEEEEEeecCCCCCCCCCC--CCCCCChhhhhhhhcCccccCCCCCeEEeeecccccccccCC
Q 000380 874 ESDVENSLVYATHK--KWFYLVTNIVFEKNGYSPYK--DSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNR 949 (1601)
Q Consensus 874 ~~~~~~~vV~~~~~--~~~y~v~~i~~d~~p~s~~~--~~~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL~~~ 949 (1601)
.+.+.+..|.+.|+ ++.|.|.++.+..++.+ |. ++...|+.+||+.+|++.+.+|+||+|.+...++
T Consensus 30 ~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~~~~-------- 100 (115)
T cd02825 30 TKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKERYNLTLTDLNQPLLIVKFSSK-------- 100 (115)
T ss_pred HHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHHcCCcccCCCCCEEEecCccc--------
Confidence 34567788899997 67899999988766655 64 3345699999999999999999999999875432
Q ss_pred ccCCcccccccccccccccccccc
Q 000380 950 KLEDSESHELEEYFDDLPPELCQL 973 (1601)
Q Consensus 950 ~~~~~~~~~~~~~~~~L~PElc~~ 973 (1601)
.....+||||+|.+
T Consensus 101 ----------~~~~~~lp~Elc~i 114 (115)
T cd02825 101 ----------KSYSILLPPELCVI 114 (115)
T ss_pred ----------CCCceEEchheEEe
Confidence 01245799999974
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. |
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-05 Score=82.90 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=123.9
Q ss_pred CCHHHHHHHhCcccc-------------------cCCCCCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhc
Q 000380 1019 VSAEMLLKALTTEKC-------------------QERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVN 1079 (1601)
Q Consensus 1019 ~~~~lll~AlT~~~~-------------------~~~~~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1079 (1601)
++.+.++.|||.+++ +...+|+-|--.|-.|+.+.++.||-++||..++..++.+-+.+++
T Consensus 77 is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ 156 (333)
T KOG3769|consen 77 ISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLG 156 (333)
T ss_pred ccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhh
Confidence 455666666666553 2346899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCcccccccCCCCCccccCCCCccccccchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHH
Q 000380 1080 NSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159 (1601)
Q Consensus 1080 N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~ 1159 (1601)
.+.|+.+|..+|+.+++++++|.+. + + ...+++.++++
T Consensus 157 ee~LahiAt~lGie~l~~seeFp~~-------~----------------------e-------------isq~ess~~aI 194 (333)
T KOG3769|consen 157 EEVLAHIATHLGIEELGLSEEFPKV-------G----------------------E-------------ISQDESSRRAI 194 (333)
T ss_pred HHHHHHHHHHhhHHHHhhcccCCCc-------h----------------------h-------------hhHHHHHHHHH
Confidence 9999999999999999999888521 0 0 01358899999
Q ss_pred HHHhhccccccChHHHHHHHHHhCccccccchhhhhhccccCCCCCcchhhcHHHHHHHhCCccCCHHHHHHh
Q 000380 1160 EALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQA 1232 (1601)
Q Consensus 1160 EAliGA~~~~~g~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~ll~~A 1232 (1601)
=||+|+++...|+..+.+|+..-=...++....++... .+...+..+.++.|.+=--..|+.++
T Consensus 195 ~Al~~~~~~ek~~~~v~dFI~~qi~~k~L~~~~m~ql~---------~P~~~L~~lckr~~l~epe~Rll~es 258 (333)
T KOG3769|consen 195 GALLGSVGLEKGFNFVRDFINDQILSKDLDPREMWQLQ---------WPRRLLSRLCKRRGLKEPESRLLAES 258 (333)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchHhhcccc---------chHHHHHHHHHHcCCCCchhHHHHHh
Confidence 99999999999999999998543233333322233211 11234667777778777777777776
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.2e-06 Score=104.35 Aligned_cols=159 Identities=20% Similarity=0.212 Sum_probs=93.0
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG- 130 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~- 130 (1601)
..+-+||.|.+..+.. -++|+++++|.|||..++..+..+..- .......|+++|.-..+. |-.++..+.+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~--~~~~~P~Lv~ap~sT~~n-we~e~~~wap~ 370 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKE--IHSPGPPLVVAPLSTIVN-WEREFELWAPS 370 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccc--cCCCCCceeeccCccccC-CCCchhccCCC
Confidence 4466899999887766 578999999999998776554322111 112235788888766554 5566655543
Q ss_pred CcEEEEeCCCCcCC----------ch--------hhHHh-hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccc
Q 000380 131 FKVRTFCGGSKRLK----------SH--------CDWEK-EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHA 191 (1601)
Q Consensus 131 l~v~~~~G~~~~~~----------~~--------~~~~~-~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~ 191 (1601)
..+..+.|...... +. ..|.. .-...+|.+.+|+.... ....+..-+++++|+||+|++
T Consensus 371 ~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~livde~~rl 448 (696)
T KOG0383|consen 371 FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLLIVDEAHRL 448 (696)
T ss_pred cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--CHHHHhhhhcceeEeechhhc
Confidence 55666666543110 00 11211 11125677777775542 222334457899999999999
Q ss_pred cccCCChHHHHHHHHcCCCCCCCCEEEEEeccccCC
Q 000380 192 QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~ 227 (1601)
..+. -+.|+........+.+.||+||..+
T Consensus 449 kn~~-------s~~f~~l~~~~~~~~~lltgtPlqn 477 (696)
T KOG0383|consen 449 KNKQ-------SKRFRVLTAYPIDSKLLLTGTPLQN 477 (696)
T ss_pred ccch-------hhhhhhccccccchhhhccCCcchh
Confidence 5321 1122222223445678899999544
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.2e-05 Score=70.34 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=53.2
Q ss_pred CChhHHHHHHHhhcCCCccccc------ccCCCeEEEEEEEecccCC---eeEeE--EEEeCCHHHHHHHHHHHHHHHhh
Q 000380 1380 LNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKD---VFISA--CATNLSRKEAIRIASQQLFSKLK 1448 (1601)
Q Consensus 1380 ~~p~~~L~e~~~~~~~~~~~~~------~~~~~~f~v~v~V~~~~~~---~~~~~--~g~g~skk~Ak~~AA~~AL~~L~ 1448 (1601)
+||++.|+|+|++++|..|.+. +.|...|.+.|.|.+.... ..-.. .-...++|+||..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5899999999999999988555 5566789999999988821 00001 12346799999999999999874
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.2e-05 Score=85.12 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhcc-C-EEEEecCchhHHHHHHHHHHHHHHH---hcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 59 ARKYQLELCKKAMEE-N-IIVYLGTGCGKTHIAVLLIYELAHL---IRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~-n-~Iv~~~TGsGKTlia~l~i~~l~~~---~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
+-+.|.+++..++.. . ++|.+|.|+|||.+....+..+... .....++++|+++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 457899999999994 4 8999999999997666655433110 1234577899999999999999988877
|
|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.9e-05 Score=85.22 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=52.8
Q ss_pred CChhHHHHHHHhhcCCCccccc----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000380 1380 LNPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1380 ~~p~~~L~e~~~~~~~~~~~~~----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
+.-+..|+||+|......+.+. ......|..+|.+++.. +++|.|.|||.||..||+.+|..|-.
T Consensus 375 ks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~-----yGsG~g~sKK~Ak~~AAR~tLeiLIP 443 (650)
T KOG4334|consen 375 KSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFP-----YGSGVGASKKTAKLVAARDTLEILIP 443 (650)
T ss_pred ceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccc-----cccccccchHHHHHHHHHHHHHHhcc
Confidence 4557889999988755555444 34456799999999877 79999999999999999999999864
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.4e-05 Score=97.37 Aligned_cols=142 Identities=21% Similarity=0.243 Sum_probs=98.3
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhc-----------CC----CCcEEEEEeCChhHHHHHHHHHHHHcC--CcEEE
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIR-----------KP----QKSICIFLAPTVALVQQQAKVIEESIG--FKVRT 135 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-----------~~----~~~~vl~LvPt~~Lv~Q~~~~l~~~~~--l~v~~ 135 (1601)
+.++.+..+|.|||..-+.... ..+-. .+ ..+.+|||+|. ++..||..+|.++++ ++|..
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l--~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILEL--SDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cceeehhhhhccchHHHHHHHH--hcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEE
Confidence 4578999999999987665542 22110 00 13568999996 888999999999984 68999
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc--------------cC------ccceeEEEEecCccccccC
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF--------------IK------MELIALLIFDECHHAQVKS 195 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~--------------~~------l~~i~llI~DEaH~~~~~~ 195 (1601)
|.|-.+..+... .++.++||||+||.+|.+-+.+.. .. +-.|=-|++|||+.+- .
T Consensus 452 Y~Girk~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve--s 526 (1394)
T KOG0298|consen 452 YFGIRKTFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE--S 526 (1394)
T ss_pred EechhhhcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc--c
Confidence 988766544433 456689999999999998776541 11 1113348999999983 4
Q ss_pred CChHHHHHHHHcCCCCCCCCEEEEEeccccCC
Q 000380 196 NHPYAKIMKDFYKPDIMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~ 227 (1601)
+..+..-|-...+ +-...+.|+||+.+
T Consensus 527 ssS~~a~M~~rL~-----~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH-----AINRWCVTGTPIQK 553 (1394)
T ss_pred hHHHHHHHHHHhh-----hhceeeecCCchhh
Confidence 4555555544333 34579999999765
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.65 E-value=9.5e-05 Score=91.29 Aligned_cols=212 Identities=15% Similarity=0.114 Sum_probs=136.3
Q ss_pred ChhHHHHHHHhhcCCCccccc----ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 000380 1381 NPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKT 1456 (1601)
Q Consensus 1381 ~p~~~L~e~~~~~~~~~~~~~----~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~ 1456 (1601)
+-+.-|..||.+..+...|.. .+....|.|.|.+.+.. ..+.|...+||.|+..||+.-++.|...+.....
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~----~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~ 77 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFG----YTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQS 77 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCc----ceeeecccccchhhHHHHHHHHHHhhhhcccccc
Confidence 346778999999888765544 34456799999998887 4677888889999999999999999866655443
Q ss_pred ccHHHHhhcCc-------cccccccccCCCCccccCCchhhhhh--cccc---CCCCCCC--------------CCCCCC
Q 000380 1457 KSLESILKSSP-------KSEARLIGYDETPINVVAADDNVFEK--LKIS---EPQGGSS--------------CDIGSP 1510 (1601)
Q Consensus 1457 ~~~~~~~~~~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~--------------~~~~~~ 1510 (1601)
+.......... -.++......+...+..+...++-++ .... +...... ..-+..
T Consensus 78 d~p~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~ 157 (1282)
T KOG0921|consen 78 DIPTLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLN 157 (1282)
T ss_pred CCcccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccC
Confidence 32211111100 00111111111111100000000000 0000 0000000 000122
Q ss_pred ccccCCcccCchhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHH
Q 000380 1511 SLTTGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGM 1590 (1601)
Q Consensus 1511 ~~~~~~~~~~~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~a 1590 (1601)
..++++|...|.|..|+++-|+.... -.|+. ...||.|.+.|+.+..+.+...+......+.|.+ ||.|...+|+..
T Consensus 158 ~~ihg~wt~eN~K~~ln~~~q~~~~~-~~y~~-~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsn-kk~~~~~ca~s~ 234 (1282)
T KOG0921|consen 158 AEIHGNWTMENAKKALNEYLQKMRIQ-DNYKY-TIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSN-KKVAEASCALSL 234 (1282)
T ss_pred ccccCCCCcchhHHHHhHHHhhhhhc-cccce-eecCCccccchhhhHHHhhhhhchhhhhhhcccc-ceecCcchHHHH
Confidence 33578899999999999999999984 47887 6899999999999998887877777776788888 999999999999
Q ss_pred HHHHHhcCC
Q 000380 1591 LWCLEREGY 1599 (1601)
Q Consensus 1591 l~~l~~~~~ 1599 (1601)
+.+|.+.+.
T Consensus 235 vrqm~hl~~ 243 (1282)
T KOG0921|consen 235 VRQLFHLNV 243 (1282)
T ss_pred HHHHHHHhh
Confidence 999988664
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.018 Score=69.67 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEeccc--ccCccC
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVG--EEGLDI 500 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vl--eeGIDi 500 (1601)
...++|||+++=-.=-.|..+|++... . .+.++- -.+..+...+-..|.+|+.++|+-|-=+ =+=..|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~----s---F~~i~E---Yts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENI----S---FVQISE---YTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCC----e---EEEecc---cCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 456899999997777778888875432 1 333333 2566777788899999999999999532 244678
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhc
Q 000380 501 QTCCLVIRFDLPETVASFIQSRGR 524 (1601)
Q Consensus 501 p~~~~VI~fd~p~s~~~yiQr~GR 524 (1601)
.++..||.|.+|.++.=|-..++-
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~ 392 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNM 392 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhh
Confidence 889999999999999877766654
|
; GO: 0005634 nucleus |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00076 Score=76.31 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHhc-----------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 58 IARKYQLELCKKAME-----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
.+-.-|.|++-.+-+ ...++.+.||.||..+..-.|. ..+++. .+++|++..+..|..+-.+.++
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~--~n~l~G--r~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIIL--ENWLRG--RKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHH--HHHHcC--CCceEEEECChhhhhHHHHHHH
Confidence 467889998866643 4579999999999888777773 344442 3568889999999998888887
Q ss_pred HHcC--CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhcc---ccCcc--------ce-eEEEEecCcccc
Q 000380 127 ESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR---FIKME--------LI-ALLIFDECHHAQ 192 (1601)
Q Consensus 127 ~~~~--l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~---~~~l~--------~i-~llI~DEaH~~~ 192 (1601)
..-. +.+..+..- ..... . --...|+++|+..|...-..+ .-+++ ++ .+|||||||++.
T Consensus 113 DIG~~~i~v~~l~~~-~~~~~----~--~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 113 DIGADNIPVHPLNKF-KYGDI----I--RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HhCCCcccceechhh-ccCcC----C--CCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 6532 222222110 00000 0 013569999999988654321 11121 22 599999999995
Q ss_pred ccCCC-----hHHHHHHHHcCCCCCCCCEEEEEeccccC
Q 000380 193 VKSNH-----PYAKIMKDFYKPDIMKVPRIFGMTASPVV 226 (1601)
Q Consensus 193 ~~~~~-----~~~~i~~~~~~~~~~~~p~ilgLTATP~~ 226 (1601)
+.... .-......+.... +.-|++-+|||...
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~L--P~ARvvY~SATgas 222 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRL--PNARVVYASATGAS 222 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhC--CCCcEEEecccccC
Confidence 32211 1111222221111 23579999999854
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0049 Score=78.75 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHH---HHHHHHHHcCCcEE
Q 000380 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ---QAKVIEESIGFKVR 134 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q---~~~~l~~~~~l~v~ 134 (1601)
.|+|=.+++-.+.- .+.|.-+-||=|||++|.++.. ...+ . ++.+.++.-.--|+.- |...+-.++|+.|+
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~y--lnaL--~-gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG 153 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAY--LNAL--A-GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVG 153 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHH--HHhc--C-CCCcEEeeehHHhhhhCHHHHHHHHHHcCCcee
Confidence 45565555554433 7889999999999999999972 2222 2 4445555555567654 55556667899999
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHH-HHHhcc------ccCccceeEEEEecCcccc
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHR------FIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~-~~l~~~------~~~l~~i~llI~DEaH~~~ 192 (1601)
+...++....++..+ .+||..+|-.-|- +.++-. ..-....++.|+||++-++
T Consensus 154 ~~~~~m~~~ek~~aY-----~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 154 VILAGMSPEEKRAAY-----ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eccCCCChHHHHHHH-----hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 999888765555444 3899999976553 122111 1113467899999999884
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00097 Score=71.16 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=69.6
Q ss_pred CceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEec--ccccCccCC
Q 000380 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATK--VGEEGLDIQ 501 (1601)
Q Consensus 424 ~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~--vleeGIDip 501 (1601)
+..+|||+++....+.+...++.......+ .+.. . ...++.++++.|+.++-.||+++. .+.||||+|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~---~v~~-q------~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGI---PVFV-Q------GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETS---CEEE-S------TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccc---eeee-c------CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 478999999999999998888764321111 1111 1 234568899999999999999998 999999999
Q ss_pred C--ccEEEEcCCCC----CH--------------------------HHHHHHhhcC-CCCCC-eEEEEEe
Q 000380 502 T--CCLVIRFDLPE----TV--------------------------ASFIQSRGRA-RMPQS-EYAFLVD 537 (1601)
Q Consensus 502 ~--~~~VI~fd~p~----s~--------------------------~~yiQr~GRA-R~g~s-~~vilv~ 537 (1601)
+ |..||...+|. ++ ....|.+||+ |..+. |.+++++
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 7 88999888873 11 3346999997 87665 4445554
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00022 Score=90.17 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=83.9
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCCcCCchhhH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFKVRTFCGGSKRLKSHCDW 149 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~ 149 (1601)
.|.++.+|||+|||++|-+.+.. .....++.++++++|.++|+..-.+...+.. |+++...+|+....-.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~---~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---- 1016 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFR---ALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK---- 1016 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHH---HhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh----
Confidence 57899999999999999988732 3344567889999999999887555544432 7889999998764311
Q ss_pred HhhhccCeEEEEcHHHHHHHHh--ccccCccceeEEEEecCccccc
Q 000380 150 EKEIDQYEVLVMIPQILLYCLY--HRFIKMELIALLIFDECHHAQV 193 (1601)
Q Consensus 150 ~~~~~~~~VlV~Tp~~l~~~l~--~~~~~l~~i~llI~DEaH~~~~ 193 (1601)
....++++|+||+..-...+ ...-.+.+++++|+||.|.+.+
T Consensus 1017 --~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1017 --AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred --heecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 23468999999998866554 2233467899999999999963
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=80.55 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=77.9
Q ss_pred CceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEecccccCccCCCc
Q 000380 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTC 503 (1601)
Q Consensus 424 ~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vleeGIDip~~ 503 (1601)
..-+++|-.--.....|...|.......+..-..+.+.|+. ....++.++.+.-..|..+++++|.+++.-|.+-++
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq---~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~ 719 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQ---LTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDV 719 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhh---cccHhhhhccCcccccccccccccceeeEeeeecce
Confidence 34688888888777778777776644333333446677774 666777778888888999999999999999988887
Q ss_pred cEEEEcCC------------------CCCHHHHHHHhhcCCCCCCeEEEEE
Q 000380 504 CLVIRFDL------------------PETVASFIQSRGRARMPQSEYAFLV 536 (1601)
Q Consensus 504 ~~VI~fd~------------------p~s~~~yiQr~GRAR~g~s~~vilv 536 (1601)
..||.-+. ..+..+.+||.||+-.-+.|++...
T Consensus 720 v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~l 770 (1282)
T KOG0921|consen 720 VYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHL 770 (1282)
T ss_pred eEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccc
Confidence 77764332 1245677999999733445666543
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00079 Score=81.37 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=64.2
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhhh
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI 153 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 153 (1601)
-++|.+..|||||++++.++..+ .....+..++++++..+|+....+.+.... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l---~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~~-------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL---QNSEEGKKVLYLCGNHPLRNKLREQLAKKY-------NPK-------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh---hccccCCceEEEEecchHHHHHHHHHhhhc-------ccc--------------
Confidence 46899999999999999887554 223346678999999999887777776542 000
Q ss_pred ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccc
Q 000380 154 DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193 (1601)
Q Consensus 154 ~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~ 193 (1601)
.....+..+..+.+.+..........++|||||||++..
T Consensus 59 -~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 -LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 012334444444443332234467889999999999963
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=83.29 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000380 58 IARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRT 135 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~ 135 (1601)
.+-+.|.+++..++. ..++|.+|+|+|||.+...++..+. . .++++|+++||..-|.+..+.+... ++++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~---~--~g~~VLv~a~sn~Avd~l~e~l~~~-~~~vvR 230 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV---K--RGLRVLVTAPSNIAVDNLLERLALC-DQKIVR 230 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH---H--cCCCEEEEcCcHHHHHHHHHHHHhC-CCcEEE
Confidence 356899999999987 5789999999999988877764432 2 2458999999999999988888763 444443
Q ss_pred E
Q 000380 136 F 136 (1601)
Q Consensus 136 ~ 136 (1601)
+
T Consensus 231 l 231 (637)
T TIGR00376 231 L 231 (637)
T ss_pred e
Confidence 3
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=58.95 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=42.6
Q ss_pred HHHHHhc-cC-EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHH
Q 000380 66 LCKKAME-EN-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 66 ~~~~~l~-~n-~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l 125 (1601)
++..++. .+ ++|.+|.|+|||.+++-.+.++......+ ++++++++|++..+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4554444 44 55699999999988877775544322334 778999999999988777766
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=80.18 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhc-cC-EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHH
Q 000380 59 ARKYQLELCKKAME-EN-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n-~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l 125 (1601)
+-+-|..++..+.. ++ .+|.+|.|+|||.+-+.+|..+.. .++++|+++||..-++...+.+
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-----~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-----QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-----cCCeEEEEcCchHHHHHHHHHh
Confidence 45679999988888 34 689999999999998888754332 3688999999999988887754
|
|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=61.54 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=66.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhChHHHHHHHHHcCchhHHhhcCcchhhhhhhhhhhccCCCCc
Q 000380 1247 RLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSST 1326 (1601)
Q Consensus 1247 rLefLGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~ 1326 (1601)
-|.|+||||+++.|-.|+...+.. .|..||..-.+.||.+.=|.+-..+ ..++. + ...+...++...
T Consensus 17 aLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lt-------e---~E~~I~KRgRNa 83 (132)
T COG1939 17 ALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLT-------E---EEEEIVKRGRNA 83 (132)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHhh-------H---HHHHHHHHhccc
Confidence 589999999999999998876443 7999999999999999877755432 11111 0 011111111111
Q ss_pred ccccCCCCCCc-------hhhhHHHHhhhhhhhcCCCChHHHHHHHHHhh
Q 000380 1327 REVKEGPRCPK-------VLGDLVESSLGAILLDSGFNLNTVWKIMLSFL 1369 (1601)
Q Consensus 1327 ~~~~~~~~~pk-------~l~D~~Ea~iGAi~~D~g~~~~~v~~~~~~~~ 1369 (1601)
. ....|| -.|--|||++|.+|+-...+ +..+++...+
T Consensus 84 k----s~T~~kn~dv~tYr~sTgfEAliGyLyL~~~~e--RL~ell~~~i 127 (132)
T COG1939 84 K----SGTKPKNTDVETYRMSTGFEALIGYLYLTKQEE--RLEELLNKVI 127 (132)
T ss_pred c----cCCCCCCCChHHHHHhhhHHHHHHHHHHcccHH--HHHHHHHHHH
Confidence 0 011222 46778999999999977654 5555555444
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0022 Score=77.49 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
.+-.-|..+++.++. .=.||.+|.|+|||.+....+.++.+ . ....+|+++|+..-|+|.++.|.+ +|++|..+
T Consensus 410 kLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~---~-~~~~VLvcApSNiAVDqLaeKIh~-tgLKVvRl 484 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLAR---Q-HAGPVLVCAPSNIAVDQLAEKIHK-TGLKVVRL 484 (935)
T ss_pred hhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHH---h-cCCceEEEcccchhHHHHHHHHHh-cCceEeee
Confidence 356789999999999 55799999999999998887755443 3 345699999999999999999976 47887777
Q ss_pred eCC
Q 000380 137 CGG 139 (1601)
Q Consensus 137 ~G~ 139 (1601)
+..
T Consensus 485 ~ak 487 (935)
T KOG1802|consen 485 CAK 487 (935)
T ss_pred ehh
Confidence 543
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0023 Score=70.00 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=86.3
Q ss_pred CCCchhhhhHHHHHHHHHHhc----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 52 DKDPKQIARKYQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 52 ~~~~~~~~R~yQ~e~~~~~l~----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
....++..|+-|.++....++ +|.+..+-+|.|||-+. +|+.. ..+. ...+.+.++||. +|..|..+.++.
T Consensus 17 E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla--~~LA-dg~~LvrviVpk-~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 17 EIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLA--LALA-DGSRLVRVIVPK-ALLEQMRQMLRS 91 (229)
T ss_pred HHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHH--HHHc-CCCcEEEEEcCH-HHHHHHHHHHHH
Confidence 334567799999999999987 68999999999999864 45532 2222 335678888894 899999988887
Q ss_pred HcC----CcEEEE--eCCCCcCC-chhhHH----hhhccCeEEEEcHHHHHHHHhcc-------cc-----------Ccc
Q 000380 128 SIG----FKVRTF--CGGSKRLK-SHCDWE----KEIDQYEVLVMIPQILLYCLYHR-------FI-----------KME 178 (1601)
Q Consensus 128 ~~~----l~v~~~--~G~~~~~~-~~~~~~----~~~~~~~VlV~Tp~~l~~~l~~~-------~~-----------~l~ 178 (1601)
.++ -++..+ .-+..... ...... .......|+++||+.++...-.+ .. -++
T Consensus 92 ~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~ 171 (229)
T PF12340_consen 92 RLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD 171 (229)
T ss_pred HHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 653 223222 22222111 111122 22345679999999887543211 10 023
Q ss_pred ceeEEEEecCcccc
Q 000380 179 LIALLIFDECHHAQ 192 (1601)
Q Consensus 179 ~i~llI~DEaH~~~ 192 (1601)
.-.-=|+||+|.++
T Consensus 172 ~~~rdilDEsDe~L 185 (229)
T PF12340_consen 172 EHSRDILDESDEIL 185 (229)
T ss_pred hcCCeEeECchhcc
Confidence 34557999999885
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0016 Score=61.02 Aligned_cols=71 Identities=30% Similarity=0.230 Sum_probs=45.6
Q ss_pred hHHHHHHHHhCCC-----CCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHHhc
Q 000380 1523 RSRLYELCAANCW-----KPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLERE 1597 (1601)
Q Consensus 1523 ~~~L~e~~~~~~~-----~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~~~ 1597 (1601)
++.|+.||++..- ..|.|.+....+ .|+|+|.+-+.- ......|....+||.||++||-.|..+|.+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~~--pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPINS--PIRSIEGPPMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT---SS--EEEE--SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCCC--CCCeEEccccccHHHHHHHHHHHHHHHHHHc
Confidence 5789999998654 358888844333 899999985321 1222346666779999999999999999999
Q ss_pred CCC
Q 000380 1598 GYL 1600 (1601)
Q Consensus 1598 ~~~ 1600 (1601)
|.+
T Consensus 75 g~l 77 (90)
T PF03368_consen 75 GEL 77 (90)
T ss_dssp -S-
T ss_pred CCC
Confidence 875
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0046 Score=67.83 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHhc-c-C-EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000380 59 ARKYQLELCKKAME-E-N-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRT 135 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~-n-~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~ 135 (1601)
+.+-|.+++..++. . + ++|.++.|+|||.+...+...+ .. .+.++++++||...+. ++++.+++.+..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~----~~-~g~~v~~~apT~~Aa~----~L~~~~~~~a~T 72 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL----EA-AGKRVIGLAPTNKAAK----ELREKTGIEAQT 72 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH----HH-TT--EEEEESSHHHHH----HHHHHHTS-EEE
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH----Hh-CCCeEEEECCcHHHHH----HHHHhhCcchhh
Confidence 45789999999976 2 3 6788999999998654433222 11 2578999999966555 455554544433
Q ss_pred EeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccc----cCccceeEEEEecCccccccCCChHHHHHHHH
Q 000380 136 FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF----IKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 136 ~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~----~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~ 206 (1601)
+..-.. ...... ..+...++||||||-.+. ...+..++...
T Consensus 73 i~~~l~---------------------------~~~~~~~~~~~~~~~~~vliVDEasmv~---~~~~~~ll~~~ 117 (196)
T PF13604_consen 73 IHSFLY---------------------------RIPNGDDEGRPELPKKDVLIVDEASMVD---SRQLARLLRLA 117 (196)
T ss_dssp HHHHTT---------------------------EECCEECCSSCC-TSTSEEEESSGGG-B---HHHHHHHHHHS
T ss_pred HHHHHh---------------------------cCCcccccccccCCcccEEEEecccccC---HHHHHHHHHHH
Confidence 322111 111100 014455799999999983 34455555544
|
|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0014 Score=65.09 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=57.8
Q ss_pred ccCcEEEeccC---CeEEEEEeecCCCCCCCCCCCC---CCCChhhhhhhhcCccccCCCCCeEEeeecccccccccCCc
Q 000380 877 VENSLVYATHK---KWFYLVTNIVFEKNGYSPYKDS---DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRK 950 (1601)
Q Consensus 877 ~~~~vV~~~~~---~~~y~v~~i~~d~~p~s~~~~~---~~~t~~~y~~~~y~~~l~~~~QPll~~~~~~~~~nlL~~~~ 950 (1601)
+.+.-|.+.|. ++.|.+.++.++..+...|+.. ...|..+||+.+|++.+.+|++|++.+..-
T Consensus 32 lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g~~----------- 100 (114)
T cd02846 32 LKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVGRK----------- 100 (114)
T ss_pred hCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeCCC-----------
Confidence 44666677776 5779999998877767777543 257999999999999999999999886421
Q ss_pred cCCcccccccccccccccccccc
Q 000380 951 LEDSESHELEEYFDDLPPELCQL 973 (1601)
Q Consensus 951 ~~~~~~~~~~~~~~~L~PElc~~ 973 (1601)
....++|+|+|.+
T Consensus 101 ----------~~~~~~P~Elc~i 113 (114)
T cd02846 101 ----------GKPNYLPMELCNI 113 (114)
T ss_pred ----------CCCcEecceeEEe
Confidence 1125789999975
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0052 Score=66.86 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhH
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~L 117 (1601)
..|..+++.+++ ..+++.+|.|+|||+.|+....++ .....-.++++.-|.++.
T Consensus 7 ~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~---v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 7 EEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALEL---VKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp HHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHH---HHTTS-SEEEEEE-S--T
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHH---HHhCCCcEEEEEecCCCC
Confidence 689999999888 668999999999999998887443 233445678888888654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.005 Score=77.02 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=41.4
Q ss_pred CccEEEEecccccCccCCCccEEEEcCCCCCHHHHHHHhhcC-CC
Q 000380 484 ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527 (1601)
Q Consensus 484 ~~~vLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~ 527 (1601)
..+.|++-.++-||.|=|+|=.++-.....|..+=+|-+||+ |.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 488999999999999999999999999999999999999998 75
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.022 Score=71.94 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~ 94 (1601)
+.|++-|.....+++. .|.++-.|||+|||+.-+-..+
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 5688899988877776 7899999999999987655543
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.024 Score=58.30 Aligned_cols=44 Identities=30% Similarity=0.301 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhcCC-ccEEEEecccccCccCCC--ccEEEEcCCC
Q 000380 469 SRNAMKSILEKFRSGE-LNLLVATKVGEEGLDIQT--CCLVIRFDLP 512 (1601)
Q Consensus 469 ~~~~r~~~l~~Fr~g~-~~vLVaT~vleeGIDip~--~~~VI~fd~p 512 (1601)
+..+..+++++|+... ..||++|.-+.||||+|+ |..||...+|
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3345678999998754 369999977999999998 6788877766
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.045 Score=66.02 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=66.2
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHh
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEK 151 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~ 151 (1601)
..+++++|||+|||.++.-++..+.........+..++-+.+ +.-+..|...+.+.+++++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~--------------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI--------------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee---------------
Confidence 357899999999999887766433211111223334444443 4444445555555555544221
Q ss_pred hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 152 EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 152 ~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
.+++.+...+.. +.+.++||||++.+.. .+...-.-+..+......+...+|.|+||-
T Consensus 240 ---------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~--~~~~~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 240 ---------ESFKDLKEEITQ----SKDFDLVLVDTIGKSP--KDFMKLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ---------CcHHHHHHHHHH----hCCCCEEEEcCCCCCc--cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 133334333332 3578999999999873 222122233333332222335688899986
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.041 Score=70.34 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE 127 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~ 127 (1601)
++|.+++..++. +-++|.++.|+|||.+...++..+........+.++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 789999999998 5679999999999998776654443322211124799999996666555554443
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.081 Score=59.32 Aligned_cols=57 Identities=28% Similarity=0.309 Sum_probs=38.7
Q ss_pred hhh-HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhH
Q 000380 58 IAR-KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 58 ~~R-~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~L 117 (1601)
.|| ..|..++..+.+ ..+++.+|+|+|||+.+.....+ .+.. ..-.++++.=|+++.
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~--~l~~-~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAE--ALIH-KDVDRIIVTRPVLQA 116 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH--HHhc-CCeeEEEEeCCCCCc
Confidence 344 578888877766 77899999999999999887643 2222 223456666666543
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.018 Score=58.72 Aligned_cols=120 Identities=19% Similarity=0.293 Sum_probs=59.1
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHh
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIR-KPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEK 151 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~ 151 (1601)
+.++|.+++|+|||..+-..+..+..... ......+.+-+|...-.......+...++..... .......+
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l~-- 76 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDELR-- 76 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHHHH--
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHHHH--
Confidence 46899999999999988877755432211 1123344555554443344555555544321100 00000001
Q ss_pred hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 152 EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 152 ~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
+.+.+.+.+. ...+|||||+|++. +...-..++.+.. ...--+.+.++|
T Consensus 77 ------------~~~~~~l~~~-----~~~~lviDe~~~l~---~~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 ------------SLLIDALDRR-----RVVLLVIDEADHLF---SDEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp ------------HHHHHHHHHC-----TEEEEEEETTHHHH---THHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred ------------HHHHHHHHhc-----CCeEEEEeChHhcC---CHHHHHHHHHHHh----CCCCeEEEEECh
Confidence 2233333332 22799999999973 2223333344433 223456667887
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.027 Score=72.04 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 61 KYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
++|.+++..++. +-++|.++.|+|||.+...++..+.... .....++++++||---+....+.+.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~-~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA-DGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCCcEEEEECCcHHHHHHHHHHHH
Confidence 789999999988 5689999999999988766654433221 1223578899999666555544443
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.032 Score=63.92 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=83.3
Q ss_pred hhh-HHHHHHHHHHhccC---EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000380 58 IAR-KYQLELCKKAMEEN---IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKV 133 (1601)
Q Consensus 58 ~~R-~yQ~e~~~~~l~~n---~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v 133 (1601)
.|| .+|.-+++..+..+ +.+.+.-|+|||+.|+.... .+-+....-+++++-=|++++-+ .+
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl--eqv~e~~~y~KiiVtRp~vpvG~------------dI 292 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL--EQVLERKRYRKIIVTRPTVPVGE------------DI 292 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH--HHHHHHhhhceEEEecCCcCccc------------cc
Confidence 466 47888888888844 67889999999999887763 33333333456788778877642 23
Q ss_pred EEEeCCCCcCCchhhHHhh-hccCeEEE----EcHHHHHHHHhccccCccce----------eEEEEecCccccccCCCh
Q 000380 134 RTFCGGSKRLKSHCDWEKE-IDQYEVLV----MIPQILLYCLYHRFIKMELI----------ALLIFDECHHAQVKSNHP 198 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~-~~~~~VlV----~Tp~~l~~~l~~~~~~l~~i----------~llI~DEaH~~~~~~~~~ 198 (1601)
+.+-|... +....|... +++-.+++ ++.+.+...+.++.+.+..+ .+||+|||+.+. .|.
T Consensus 293 GfLPG~eE--eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---phe 367 (436)
T COG1875 293 GFLPGTEE--EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHE 367 (436)
T ss_pred CcCCCchh--hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHH
Confidence 33444432 122234322 12222222 23456666666654443332 689999999993 565
Q ss_pred HHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 199 YAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 199 ~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
...|+.+. ..-.+|+ ||+-|
T Consensus 368 ikTiltR~-----G~GsKIV-l~gd~ 387 (436)
T COG1875 368 LKTILTRA-----GEGSKIV-LTGDP 387 (436)
T ss_pred HHHHHHhc-----cCCCEEE-EcCCH
Confidence 66666654 2224455 45655
|
|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.042 Score=65.06 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCChhHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~-~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
.++++-+|+|+|||..-+.++ +......| ...+.++..-|++=++....+++
T Consensus 36 Gh~llEMPSGTGKTvsLLSli--~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 36 GHCLLEMPSGTGKTVSLLSLI--IAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CcEEEECCCCCCcchHHHHHH--HHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 789999999999998777776 33444444 23456666666665555555544
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.067 Score=70.41 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHh----cCC
Q 000380 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFR----SGE 484 (1601)
Q Consensus 409 ~~~L~~lL~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr----~g~ 484 (1601)
...+.+.+..... .+.+++||+.+....+.++..|.... . .-+-..+. ..+..++++|+ .|+
T Consensus 520 ~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~-----~--~~ll~Q~~------~~~~~ll~~f~~~~~~~~ 585 (697)
T PRK11747 520 TAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDL-----R--LMLLVQGD------QPRQRLLEKHKKRVDEGE 585 (697)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhc-----C--CcEEEeCC------chHHHHHHHHHHHhccCC
Confidence 3345555544333 34458999999999999998886421 1 11112221 23566777776 467
Q ss_pred ccEEEEecccccCccCCC--ccEEEEcCCCC----CH--------------------------HHHHHHhhcC-CCC-CC
Q 000380 485 LNLLVATKVGEEGLDIQT--CCLVIRFDLPE----TV--------------------------ASFIQSRGRA-RMP-QS 530 (1601)
Q Consensus 485 ~~vLVaT~vleeGIDip~--~~~VI~fd~p~----s~--------------------------~~yiQr~GRA-R~g-~s 530 (1601)
-.||++|..+.||||+|+ |.+||...+|. ++ ..+.|.+||. |.. ..
T Consensus 586 ~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 586 GSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred CeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 779999999999999998 88898777652 22 3456999996 876 44
Q ss_pred eEEEEEe
Q 000380 531 EYAFLVD 537 (1601)
Q Consensus 531 ~~vilv~ 537 (1601)
|.+++++
T Consensus 666 G~i~ilD 672 (697)
T PRK11747 666 GRVTILD 672 (697)
T ss_pred EEEEEEc
Confidence 6666655
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.031 Score=71.27 Aligned_cols=124 Identities=21% Similarity=0.160 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHhc-cC-EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000380 59 ARKYQLELCKKAME-EN-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~-~n-~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
+-.-|++|+.+++. +| .+|.+-.|+|||.+-..+|+.+.. .+++||..+=|-.-|+...-.++.+ ++.+..+
T Consensus 670 LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----~gkkVLLtsyThsAVDNILiKL~~~-~i~~lRL 743 (1100)
T KOG1805|consen 670 LNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----LGKKVLLTSYTHSAVDNILIKLKGF-GIYILRL 743 (1100)
T ss_pred cCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----cCCeEEEEehhhHHHHHHHHHHhcc-Ccceeec
Confidence 55789999999998 44 688888899999888887765433 3778999999877777666655542 2222211
Q ss_pred eCCCCc--------------CCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 137 CGGSKR--------------LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 137 ~G~~~~--------------~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
-.+... ...-+.+.+.++...||.+|.=-+ .+..+..+++|++|+|||-.+.
T Consensus 744 G~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi----~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 744 GSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI----NHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----CchhhhccccCEEEEccccccc
Confidence 111111 122334556677888999985322 2334456779999999998873
|
|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0095 Score=79.92 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred ccccCcEEEeccCCeEEEEEeecCCCCCCCCCCCC-----------CCCChhhhhhhhcCccccCC-CCCeEEeeecccc
Q 000380 875 SDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDS-----------DSSSHVDHLISSYGIHLKHP-KQPLLRAKPLFRL 942 (1601)
Q Consensus 875 ~~~~~~vV~~~~~~~~y~v~~i~~d~~p~s~~~~~-----------~~~t~~~y~~~~y~~~l~~~-~QPll~~~~~~~~ 942 (1601)
+.+.+..|.+.|+++.|.|.+|.++.++...|... ...|+.+||+++|++.+.++ ++|++.+..
T Consensus 293 ~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~---- 368 (900)
T PLN03202 293 RMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK---- 368 (900)
T ss_pred HHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC----
Confidence 34567788999999999999999999998888421 25699999999999999986 789875321
Q ss_pred cccccCCccCCccccccccccccccccccccc
Q 000380 943 RNLLHNRKLEDSESHELEEYFDDLPPELCQLK 974 (1601)
Q Consensus 943 ~nlL~~~~~~~~~~~~~~~~~~~L~PElc~~~ 974 (1601)
....++||||||.+.
T Consensus 369 -----------------~~~~~ylP~ElC~i~ 383 (900)
T PLN03202 369 -----------------PKRPTYFPIELCSLV 383 (900)
T ss_pred -----------------CCCCeEEcceeeEcc
Confidence 011357999999873
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.47 Score=56.85 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=71.2
Q ss_pred CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcCCccEEEEeccc--ccCccC
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVG--EEGLDI 500 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g~~~vLVaT~vl--eeGIDi 500 (1601)
...-+||+.++--.--.+-..+++.... .+.++-. .++.+-.++-+-|-.|..++|+-|.-+ =+-.+|
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e~i~-------F~~i~EY---ssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~i 620 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKEEIS-------FVMINEY---SSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHI 620 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhhhcc-------hHHHhhh---hhHhhhhHHHHHHHhcCceEEEEehhhhhhhhhee
Confidence 3456899999877666677777764321 2222221 233444455677999999999999543 356789
Q ss_pred CCccEEEEcCCCCCHH---HHHHHhhcC-CCC--CC---eEEEEEeCCCH
Q 000380 501 QTCCLVIRFDLPETVA---SFIQSRGRA-RMP--QS---EYAFLVDSGNQ 541 (1601)
Q Consensus 501 p~~~~VI~fd~p~s~~---~yiQr~GRA-R~g--~s---~~vilv~~~~~ 541 (1601)
.++..||.|.+|.+|. .++-+.+|+ -.| .. ...+|++.-+.
T Consensus 621 kGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 621 KGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred cceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9999999999999984 557888884 222 22 23346665544
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.021 Score=69.36 Aligned_cols=67 Identities=27% Similarity=0.233 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHhhcCCCccccc---ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhcCCC
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS---LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYV 1453 (1601)
Q Consensus 1379 ~~~p~~~L~e~~~~~~~~~~~~~---~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 1453 (1601)
.++|++.|+|+.. +..+.+.. +.+...|.+.|.|+|.. ..|.|+|||+||+.||..||+.|......
T Consensus 89 ~~npv~ll~e~~~--~~~~~~~~~~~~~~~~~F~~~~~vdg~~------~~~~~~sKk~ak~~aa~~al~~l~~~~~~ 158 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--GLFFDFVNESGPQHAPKFVMSVVVDGRW------FEGGGRSKKEAKQEAAMAALQVLFKIDEN 158 (542)
T ss_pred cCCchHHHHHHhc--ccceeeeccCCCCCCceEEEEEEECCEE------ccCCCcchHHHHHHHHHHHHHHHHhccCC
Confidence 6799999999998 44333332 67788999999999998 44449999999999999999999765443
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.082 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=18.4
Q ss_pred cCEEEEecCchhHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.+++.+|+|+|||..+...+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999877665533
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.096 Score=69.07 Aligned_cols=67 Identities=22% Similarity=0.159 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
..+.+-|.+++..+.. +-++|.++.|+|||.+.-.++..+.. ......+++++||-.-+. .+.+.+|
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~AA~----~L~e~~g 389 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRAAK----RLGEVTG 389 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHHHH----HHHHhcC
Confidence 4577899999999987 67899999999999876555432211 111257888999965554 4544444
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.033 Score=57.41 Aligned_cols=64 Identities=30% Similarity=0.398 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCc---cEEEEecc--cccCccCCC--ccEEEEcCCCC----CH---------------------------
Q 000380 474 KSILEKFRSGEL---NLLVATKV--GEEGLDIQT--CCLVIRFDLPE----TV--------------------------- 515 (1601)
Q Consensus 474 ~~~l~~Fr~g~~---~vLVaT~v--leeGIDip~--~~~VI~fd~p~----s~--------------------------- 515 (1601)
.+++++|++..- .||+++.- +.||||+|+ |+.||...+|. ++
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 578888887543 58888876 999999999 78898877762 11
Q ss_pred HHHHHHhhcC-CCCCC-eEEEEEe
Q 000380 516 ASFIQSRGRA-RMPQS-EYAFLVD 537 (1601)
Q Consensus 516 ~~yiQr~GRA-R~g~s-~~vilv~ 537 (1601)
....|.+||+ |..+. |.+++++
T Consensus 114 ~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 114 RALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHhCccccCccceEEEEEEe
Confidence 3346999996 77654 5555554
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.021 Score=68.76 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=61.5
Q ss_pred EecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC----CcEEEEeCCCCc-CCchhhHHhh
Q 000380 78 YLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG----FKVRTFCGGSKR-LKSHCDWEKE 152 (1601)
Q Consensus 78 ~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~----l~v~~~~G~~~~-~~~~~~~~~~ 152 (1601)
.|.||||||++-..+|+++. .++. +..||.|+....++....-+..-.. +.-.+..++... ......+...
T Consensus 3 ~matgsgkt~~ma~lil~~y---~kgy-r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECY---KKGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHH---Hhch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 57899999999888875543 2332 3478888876666654443321100 111111222211 1111112111
Q ss_pred hccCeEEEEcHHHHHHHHhcc---ccC---ccceeE-EEEecCcccc
Q 000380 153 IDQYEVLVMIPQILLYCLYHR---FIK---MELIAL-LIFDECHHAQ 192 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~---~~~---l~~i~l-lI~DEaH~~~ 192 (1601)
-++-.|+++|.|.|...+.+. .+. +.+..+ .+-|||||+-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 134679999999999877654 222 344444 5679999993
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.19 Score=66.59 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000380 57 QIARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVR 134 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~ 134 (1601)
+.+.+-|.+++..++. +-++|.++.|+|||.+.-.++.. ... .+.++++++||--- +..+++.+|+...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~----~~~-~g~~V~~~ApTg~A----a~~L~~~~g~~a~ 421 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREA----WEA-AGYRVIGAALSGKA----AEGLQAESGIESR 421 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHH----HHh-CCCeEEEEeCcHHH----HHHHHhccCCcee
Confidence 4467899999999887 45799999999999775554322 111 36789999999443 3344444443322
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
.+ ..++.....+...+...++||||||-.+. ...+..+++.
T Consensus 422 Ti---------------------------~~~~~~~~~~~~~~~~~~llIvDEasMv~---~~~~~~Ll~~ 462 (744)
T TIGR02768 422 TL---------------------------ASLEYAWANGRDLLSDKDVLVIDEAGMVG---SRQMARVLKE 462 (744)
T ss_pred eH---------------------------HHHHhhhccCcccCCCCcEEEEECcccCC---HHHHHHHHHH
Confidence 11 11111112222335577999999999983 3345555554
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.038 Score=60.36 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=24.1
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP 113 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvP 113 (1601)
+++.+|+|+|||..++..+..+.. .+++++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~-----~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE-----RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH-----cCCeEEEEec
Confidence 578899999999877776543221 2567887766
|
|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.022 Score=66.22 Aligned_cols=67 Identities=19% Similarity=0.111 Sum_probs=55.0
Q ss_pred chhHHHHHHHHhCCCCCCceeEeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHHH
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1521 ~~~~~L~e~~~~~~~~~p~y~~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l~ 1595 (1601)
..+-.|+||+|+-.-..|.|++.+... .+--|..+|.++ + .-++.|.|.| ||.||..||+.+|..|-
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~n--~stpysa~v~~d----~-~~yGsG~g~s-KK~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAENDN--NSTPYSAGVLPD----L-FPYGSGVGAS-KKTAKLVAARDTLEILI 442 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhccC--CCCccccccccc----c-cccccccccc-hHHHHHHHHHHHHHHhc
Confidence 445799999999988999999855443 346799999995 2 5566899999 99999999999999874
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.043 Score=62.63 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.3
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL 111 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~L 111 (1601)
+|+++++|+|+|||..+..+..++.. .+.+++|.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~-----~g~~v~f~ 132 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ-----AGHRVLFA 132 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH-----CCCchhhh
Confidence 79999999999999998877644332 24556554
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.33 Score=62.55 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhc--------cCEE-EEecCchhHHHHHHHHHHHHHH
Q 000380 59 ARKYQLELCKKAME--------ENII-VYLGTGCGKTHIAVLLIYELAH 98 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~--------~n~I-v~~~TGsGKTlia~l~i~~l~~ 98 (1601)
-|+-|.+.+..++. .++| |.++||+|||.++-..+.++..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57777776655544 2454 9999999999998888766543
|
|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.17 Score=49.13 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCccccchhhhHHHHHHHHHHHhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCcccccccCCCCCccccCCCCccccc
Q 000380 1038 SLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRIC 1117 (1601)
Q Consensus 1038 ~~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~ 1117 (1601)
|-=-|+|+||||+.+.|-.|+....-. ..+.||..-.+.||-+.=+.+-..+ ..++. +.+ ..|...|+.
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lt-e~E--~~I~KRgRN----- 82 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLT-EEE--EEIVKRGRN----- 82 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHhh-HHH--HHHHHHhcc-----
Confidence 334578999999999999988776333 6889999999999877655554331 11111 000 001111110
Q ss_pred cchhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHhhccccccChHHHHHHHHHh
Q 000380 1118 SKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAliGA~~~~~g~~~a~~~~~~l 1182 (1601)
...+..+.+ -.+..--.|..+|||||..|+..-.+.-..++.|.
T Consensus 83 ----------aks~T~~kn-----------~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 83 ----------AKSGTKPKN-----------TDVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred ----------cccCCCCCC-----------CChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 011111110 11233456889999999999999888887777663
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.1 Score=62.17 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCC
Q 000380 61 KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGS 140 (1601)
Q Consensus 61 ~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~ 140 (1601)
+-|.+++.. ..++++|.|+.|||||.+.+..+..+..... -+..++|+|+.|+..+....+.+...++-.. .
T Consensus 3 ~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~------~ 74 (315)
T PF00580_consen 3 DEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQ------Q 74 (315)
T ss_dssp HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCC------H
T ss_pred HHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccc------c
Confidence 568888887 6799999999999999988777644322111 2345799999999999998888887532100 0
Q ss_pred CcCCchhhHHhh-hccCeEEEEcHHHHHHHHhccccCcc--ceeEEEEecCc
Q 000380 141 KRLKSHCDWEKE-IDQYEVLVMIPQILLYCLYHRFIKME--LIALLIFDECH 189 (1601)
Q Consensus 141 ~~~~~~~~~~~~-~~~~~VlV~Tp~~l~~~l~~~~~~l~--~i~llI~DEaH 189 (1601)
...... .+... -....+.|+|-..+...+-+...... .-++-|+|+..
T Consensus 75 ~~~~~~-~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ESSDNE-RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCTT-H-HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccc-cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000000 11111 12356889998877654333221111 12455666655
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.11 Score=58.61 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhc-------cCEEEEecCchhHHHHHHHHHHH
Q 000380 61 KYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-------~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.+|..++...++ -+.+..+|.|+|||-++.++.++
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 467766655444 36899999999999998877654
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.28 Score=56.38 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=28.9
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQ 121 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~ 121 (1601)
+|+++++|+|+|||..+..+..++.. .+..++|+ +...|+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~-----~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIE-----NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHH-----cCCceeee-eHHHHHHHH
Confidence 78999999999999988876644322 24455554 334555543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.63 Score=57.37 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=62.5
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEE-eCC-hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHh
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL-APT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEK 151 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~L-vPt-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~ 151 (1601)
.+++++|||+|||.++..++..+.. .. .+.++.++ +.+ +.-+.+|...+.+.+++.+..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~--~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~---------------- 283 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYAL--LY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV---------------- 283 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--hc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc----------------
Confidence 4789999999999888776543321 11 23344444 332 222223333333444443322
Q ss_pred hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 152 EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 152 ~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
+.+++-+...+.. +.+.++||||.+-+.. .+......+..+...........|.|+||.
T Consensus 284 --------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~--~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~ 342 (424)
T PRK05703 284 --------VYDPKELAKALEQ----LRDCDVILIDTAGRSQ--RDKRLIEELKALIEFSGEPIDVYLVLSATT 342 (424)
T ss_pred --------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCC--CCHHHHHHHHHHHhccCCCCeEEEEEECCC
Confidence 2233334444432 3367999999997652 233334445444442212345678899987
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.62 Score=56.90 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHHHHHhc--------cCEEEEecCchhHHHHHHHHHHHH
Q 000380 56 KQIARKYQLELCKKAME--------ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~--------~n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
.+.-|+-|.+.+...++ .+++|.+|+|+|||.++-..+.++
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34568888876655543 479999999999998877666544
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.13 Score=58.81 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=34.9
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
.|+++.+++|+|||+.|+.+..++.. .+. -+..+++..|+.+....+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~-----~g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLK-----AGI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH-----cCC-eEEEEEHHHHHHHHHHHHh
Confidence 79999999999999999887755431 234 4555677788777655543
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.3 Score=53.45 Aligned_cols=121 Identities=18% Similarity=0.115 Sum_probs=63.9
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeC-ChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhhh
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP-TVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI 153 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~~ 153 (1601)
+++++|||+|||-.+.-+...+. .. ..+..++-+. .|.=+.+|.+.+.+.+++++....-..+ +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~---~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-------~---- 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLK---LK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-------P---- 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH---HT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-------H----
T ss_pred EEEECCCCCchHhHHHHHHHHHh---hc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-------h----
Confidence 57899999999998887764432 22 3344444443 4555666778888877766554321111 0
Q ss_pred ccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 154 DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 154 ~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
.+.+.+.+.. ...++.++|+||-+-+.. .+.....-|+.+.... .+....|.|+||-
T Consensus 69 ---------~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~--~d~~~~~el~~~~~~~-~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 69 ---------AEIAREALEK--FRKKGYDLVLIDTAGRSP--RDEELLEELKKLLEAL-NPDEVHLVLSATM 125 (196)
T ss_dssp ---------HHHHHHHHHH--HHHTTSSEEEEEE-SSSS--THHHHHHHHHHHHHHH-SSSEEEEEEEGGG
T ss_pred ---------HHHHHHHHHH--HhhcCCCEEEEecCCcch--hhHHHHHHHHHHhhhc-CCccceEEEeccc
Confidence 1112122221 122457899999987652 1222222333322211 2335678888886
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.22 Score=56.54 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=28.6
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQ 121 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~ 121 (1601)
.++++.+++|+|||..+..+...+.. .+..++| ++...|..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~-----~g~~v~~-i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA-----KGRSVIV-VTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-----cCCCeEE-EEHHHHHHHH
Confidence 57899999999999998887655432 2344444 4444565543
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.35 Score=61.94 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHhcC----CccEEEEecccccCc
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG----ELNLLVATKVGEEGL 498 (1601)
Q Consensus 423 ~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr~g----~~~vLVaT~vleeGI 498 (1601)
.+++++|-+.+....+.+++.|.... .. -+-+.+. . ..+...+++|+.. +-.||++|+.+-|||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l-----~~--~~l~qg~---~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI-----PA--EIVIQSE---K--NRLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc-----CC--CEEEeCC---C--ccHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 45578888888888888888886531 11 1122221 1 2346688999874 688999999999999
Q ss_pred cC--------CC--ccEEEEcCCCCC-------------------------HHHHHHHhhcC-CCCC---CeEEEEEeC
Q 000380 499 DI--------QT--CCLVIRFDLPET-------------------------VASFIQSRGRA-RMPQ---SEYAFLVDS 538 (1601)
Q Consensus 499 Di--------p~--~~~VI~fd~p~s-------------------------~~~yiQr~GRA-R~g~---s~~vilv~~ 538 (1601)
|+ |+ +.+||...+|.. ...+.|-+||- |..+ .|.+++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 99 23 889997776621 24457888884 6654 466666653
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.56 Score=63.17 Aligned_cols=110 Identities=13% Similarity=0.010 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHhc-c-CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000380 57 QIARKYQLELCKKAME-E-NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVR 134 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~-n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~ 134 (1601)
+.+.+-|.+++..++. + -++|.++.|+|||.+- ..+.. .... .+.+++.++||---+ ..+..-+|+...
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~---~~e~-~G~~V~~~ApTGkAA----~~L~e~tGi~a~ 415 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVARE---AWEA-AGYEVRGAALSGIAA----ENLEGGSGIASR 415 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHH---HHHH-cCCeEEEecCcHHHH----HHHhhccCcchh
Confidence 3477899999999988 4 3799999999999763 33322 2221 366799999994433 344443333211
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
|-..|+.....+...+..-++||||||-.+ +...+..+++.
T Consensus 416 ---------------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv---~~~~m~~LL~~ 456 (988)
T PRK13889 416 ---------------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMV---GTRQLERVLSH 456 (988)
T ss_pred ---------------------------hHHHHHhhhcccccccccCcEEEEECcccC---CHHHHHHHHHh
Confidence 112221111122223556789999999988 33345555554
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.1 Score=53.41 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=71.9
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHh
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEK 151 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~ 151 (1601)
+.+.+++|||.|||-.-.-+...+. +.....+..||-..| |-=+..|.+...+.+++++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~--~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYV--MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH--hhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 3478999999999987666554332 123334555665554 3333445555555555544
Q ss_pred hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 152 EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 152 ~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
.+|-+|+-|...+. .+.+.++|.+|=+-+-. .+..+..-|+.|.... .+....|.||||-
T Consensus 264 ------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~--~D~~~i~el~~~~~~~-~~i~~~Lvlsat~ 323 (407)
T COG1419 264 ------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQ--YDKEKIEELKELIDVS-HSIEVYLVLSATT 323 (407)
T ss_pred ------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCc--cCHHHHHHHHHHHhcc-ccceEEEEEecCc
Confidence 34456666665544 35667899999876642 2334555666665544 3456678889886
|
|
| >KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.05 Score=66.70 Aligned_cols=165 Identities=18% Similarity=0.049 Sum_probs=89.9
Q ss_pred ccCCCeEEEEEEEecccCCeeEeEEEEeCCHHHHHHHHHHHHHHHhhhcCCCCCCccHHHHhhcCccccccccccCCCCc
Q 000380 1402 LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPI 1481 (1601)
Q Consensus 1402 ~~~~~~f~v~v~V~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 1481 (1601)
|.|.+.|+.++.|++.. ....|.|++.|+..||.+.|+..... ... ......... .+.++... .+.
T Consensus 402 P~~~~~~t~e~r~~~~~------~~a~gps~~~~~wh~~~k~lq~~~~p-~ga-~~r~~~~ge-~~a~~p~~-----~~r 467 (816)
T KOG3792|consen 402 PSHRPRRTMEVRVNGLP------AEAEGPSKKTAKWHAARKRLQNEGRP-TGA-AQRFGRMGE-DPASMPEP-----KGR 467 (816)
T ss_pred CcccchhhhhhhhcCCc------cccCCcccccchHHHHHHHhhccCCC-ccc-cccccccCC-CcccCCCC-----CCc
Confidence 77888999999999887 77889999999999999988776410 000 000000000 00000000 000
Q ss_pred cccCCchhhhhhccccC-CCCCCCCCCCCCccc-cCCcccCchhHHHHHHHHhCCCCCCceeEeeccC-CCCCcceEEEE
Q 000380 1482 NVVAADDNVFEKLKISE-PQGGSSCDIGSPSLT-TGGLQNRSARSRLYELCAANCWKPPTFDCCKEEG-LSHLKLFTFRV 1558 (1601)
Q Consensus 1482 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~e~~~~~~~~~p~y~~~~~~g-~~h~~~F~~~v 1558 (1601)
...+.++ . .+.. .....++......+- .+...+..-|.-..++..+++.. .|+..++.| .+|.++|++.|
T Consensus 468 ~~as~dd--r---~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek~rg~--k~El~set~~gs~~~R~v~gV 540 (816)
T KOG3792|consen 468 RPASVDD--R---HANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEKRRGD--KYELPSETGTGSHDKRFVKGV 540 (816)
T ss_pred ccCCCcc--h---hhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhhcccc--ceecccccCCCCCCceeeeee
Confidence 0000000 0 0000 000000000000000 12222333444445555555543 588888877 89999999999
Q ss_pred EEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHHH
Q 000380 1559 IVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCL 1594 (1601)
Q Consensus 1559 ~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~l 1594 (1601)
.+. | +...|.+.+ ||-|+..||..|+..+
T Consensus 541 ~rv----G--~~akG~~~~-gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 541 MRV----G--ILAKGLLLN-GDRAVELALLCAEKPT 569 (816)
T ss_pred eee----e--hhhcccccc-chHHHHHHHHhccCcc
Confidence 995 3 233699999 9999999998887644
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.41 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.0
Q ss_pred cCEEEEecCchhHHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
.++++.+|+|+|||.+|-.....+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999988776544
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.64 Score=55.78 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=63.4
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA-PT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWE 150 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~Lv-Pt-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~ 150 (1601)
+.+++++|||+|||..+..++..+. .+.+ .+++.++. .+ +.=+.+|.+.+.+..++.+..+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~--~~~G-~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~------------- 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCV--MRFG-ASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK------------- 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--HhcC-CCeEEEEecccccccHHHHHHHHHHHcCCceEecC-------------
Confidence 3678999999999998887764322 1111 23344333 22 22244566666666665554432
Q ss_pred hhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 151 KEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 151 ~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
+++.+...+. .+.+.++|+||++=... .+......+..+... .....++|.|+||-
T Consensus 202 -----------~~~~l~~~l~----~l~~~DlVLIDTaG~~~--~d~~l~e~La~L~~~-~~~~~~lLVLsAts 257 (374)
T PRK14722 202 -----------DGGDLQLALA----ELRNKHMVLIDTIGMSQ--RDRTVSDQIAMLHGA-DTPVQRLLLLNATS 257 (374)
T ss_pred -----------CcccHHHHHH----HhcCCCEEEEcCCCCCc--ccHHHHHHHHHHhcc-CCCCeEEEEecCcc
Confidence 2222222222 23456899999996542 222334444444221 12335688889886
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.54 Score=53.64 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=55.7
Q ss_pred HHHHHHhcCCccEEEEecccccCccCCC--------ccEEEEcCCCCCHHHHHHHhhcC-CCCCCe---EEEEEeCCCHh
Q 000380 475 SILEKFRSGELNLLVATKVGEEGLDIQT--------CCLVIRFDLPETVASFIQSRGRA-RMPQSE---YAFLVDSGNQR 542 (1601)
Q Consensus 475 ~~l~~Fr~g~~~vLVaT~vleeGIDip~--------~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~---~vilv~~~~~~ 542 (1601)
...++|.+|+..|+|-|++++.||-+.+ -.+-|...+||+....+|..||. |.+|.. |. ++..+-.-
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~-~l~t~~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYR-FLVTDLPG 130 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEE-EeecCCHH
Confidence 4567899999999999999999998864 23567889999999999999998 999864 33 34444444
Q ss_pred HHHHH
Q 000380 543 ELDLI 547 (1601)
Q Consensus 543 ~~~~i 547 (1601)
|.+..
T Consensus 131 E~Rfa 135 (278)
T PF13871_consen 131 ERRFA 135 (278)
T ss_pred HHHHH
Confidence 44433
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.091 Score=53.79 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=25.6
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChh
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVA 116 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~ 116 (1601)
+++++.+|+|+|||..+..++..+ ... ...++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~----~~~-~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL----GPP-GGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc----CCC-CCCEEEECCEEc
Confidence 468999999999998877665332 111 124666666543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.36 Score=55.34 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=35.4
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhc--CCC----CcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIR--KPQ----KSICIFLAPTVALVQQQAKVIEESIGFK 132 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~--~~~----~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~ 132 (1601)
.|.+|+++||.|||.++--. .+... ... -+.+.+-+|..+=..-.+..|-..++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF----~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERF----RRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred CceEEecCCCCcHHHHHHHH----HHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 58999999999999765333 22211 111 2356666777777666777776665543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.4 Score=54.35 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.2
Q ss_pred cCEEEEecCchhHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~ 94 (1601)
.++++++|+|+|||..+.....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988776543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.31 Score=55.08 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.0
Q ss_pred CEEEEecCchhHHHHHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.+++++|+|+|||..+.....+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999987776544
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.61 Score=52.78 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=22.9
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA 112 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~Lv 112 (1601)
-+++.+++|+|||..+.....++. + .+.+++++.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~---~--~~~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE---Q--AGRSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH---H--cCCcEEEEe
Confidence 489999999999988776553322 1 244566653
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.9 Score=52.01 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHhc--------cCEEEEecCchhHHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME--------ENIIVYLGTGCGKTHIAVLLIYELA 97 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~--------~n~Iv~~~TGsGKTlia~l~i~~l~ 97 (1601)
..-|+-|.+-+..++. .|++|.++||+|||.+.-..+.++.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 4567888776655544 5799999999999999888776543
|
|
| >PF14954 LIX1: Limb expression 1 | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.38 Score=50.62 Aligned_cols=72 Identities=14% Similarity=-0.090 Sum_probs=48.7
Q ss_pred ccCchhHHHHHHHHhCCC---CCCcee-EeeccCCCCCcceEEEEEEEeecCCceEEEcCCCCcchhHHHHHHHHHHHHH
Q 000380 1518 QNRSARSRLYELCAANCW---KPPTFD-CCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWC 1593 (1601)
Q Consensus 1518 ~~~~~~~~L~e~~~~~~~---~~p~y~-~~~~~g~~h~~~F~~~v~v~~~~~~~~~~~~g~g~~~Kk~Ak~~AA~~al~~ 1593 (1601)
...|-+..||||=|.+.- .+|.=. ++.+..|+..|-|+|-|++- | |...+.=.-..||.+|+++||+.||..
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLP--G--GSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLP--G--GSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCC--C--CCccCccccCCcHHHHHhhhHHHHHHH
Confidence 345899999999765433 222222 23466788889999999993 3 333323334444999999999999864
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=2 Score=51.41 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=47.8
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEE-EEeCC-h-hHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICI-FLAPT-V-ALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDW 149 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl-~LvPt-~-~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 149 (1601)
+.+.+++|||+|||..+..+...+. . .++++. +-+.+ + .-+.|+. ...+..++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~----~-~GkkVglI~aDt~RiaAvEQLk-~yae~lgipv~--------------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH----G-KKKTVGFITTDHSRIGTVQQLQ-DYVKTIGFEVI--------------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH----H-cCCcEEEEecCCcchHHHHHHH-HHhhhcCCcEE---------------
Confidence 3568999999999988877764432 1 233444 44433 2 2344433 33333333222
Q ss_pred HhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccc
Q 000380 150 EKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHA 191 (1601)
Q Consensus 150 ~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~ 191 (1601)
++.++..+.+.+.... .-.+.++|+||-+=+.
T Consensus 301 ---------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 301 ---------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKN 332 (436)
T ss_pred ---------ecCCHHHHHHHHHHHH-hccCCCEEEEeCcccc
Confidence 2335665555443210 1125799999988765
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=91.25 E-value=2.7 Score=48.72 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.5
Q ss_pred CEEEEecCchhHHHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i 93 (1601)
.+++.+|+|+|||..+-...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999998766553
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.7 Score=53.73 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHhc--------cCEEEEecCchhHHHHHHHHHHHH
Q 000380 56 KQIARKYQLELCKKAME--------ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~--------~n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
.+.-|+-|.+.+...+. .+++|.+|+|+|||.++-.++.++
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34457777666555542 579999999999998877665443
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.86 Score=51.60 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=24.2
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL 111 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~L 111 (1601)
++++.+++|+|||..+..++.++.. .+..++|+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-----~g~~v~~i 133 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-----RGKSVLII 133 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEE
Confidence 6899999999999988877654332 24556655
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.1 Score=57.42 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHhc---cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHH-HHHHHcC---
Q 000380 58 IARKYQLELCKKAME---ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAK-VIEESIG--- 130 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~---~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~-~l~~~~~--- 130 (1601)
...|||.|..+.+-. +.+.+..++-+|||.+....+ ...+...+ ..++++.||..++.++.+ .|...+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~---g~~i~~~P-~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWI---GYSIDQDP-GPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhc---eEEEEeCC-CCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 355899999998877 678999999999999665554 22233333 458999999999998763 4443321
Q ss_pred -CcEEEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCcccc---ccCCChHHHHHHHH
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ---VKSNHPYAKIMKDF 206 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~~~~~i~~~~ 206 (1601)
++ ..+..............+.|.+..+.+..... -..+.-..+++|++||.+..- .....|.....++.
T Consensus 92 ~l~-~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~ 164 (557)
T PF05876_consen 92 VLR-RKLSPSKSRDSGNTILYKRFPGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRT 164 (557)
T ss_pred HHH-HHhCchhhcccCCchhheecCCCEEEEEeCCC------CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHH
Confidence 11 11222111112222334445556666665431 123445568999999999983 22335666555543
Q ss_pred cCCCCCCCCEEEEEeccccCCC
Q 000380 207 YKPDIMKVPRIFGMTASPVVGK 228 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~~ 228 (1601)
... .... .+.+..||....
T Consensus 165 ~tf--~~~~-K~~~~STPt~~~ 183 (557)
T PF05876_consen 165 KTF--GSNR-KILRISTPTIEG 183 (557)
T ss_pred hhh--ccCc-EEEEeCCCCCCC
Confidence 222 1123 444567897653
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.3 Score=50.59 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHhc---------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHH
Q 000380 57 QIARKYQLELCKKAME---------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQ 121 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~---------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~ 121 (1601)
..+|..+..+++.+.+ .++++.++||+|||+.+..++.++.. .+..|+|+ +...|..+.
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~-----~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD-----RGKSVIYR-TADELIEIL 226 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-----CCCeEEEE-EHHHHHHHH
Confidence 3688888777765542 68999999999999988877655432 24556554 445665554
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.74 Score=54.17 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.4
Q ss_pred cCEEEEecCchhHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i 93 (1601)
.+.|+++|.|+|||-+|-++.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH
Confidence 689999999999998887655
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.9 Score=43.50 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.4
Q ss_pred EEEEecCchhHHHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~ 94 (1601)
+++.+|.|+|||..+-.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 58999999999987766653
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.5 Score=59.57 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000380 57 QIARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVR 134 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~ 134 (1601)
+.+.+-|.+++..+.. +-++|.++-|+|||.+.-.+.. ... ..+.+++.++||-- .++.+.+.+|+...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~----~~e-~~G~~V~g~ApTgk----AA~~L~e~~Gi~a~ 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAARE----AWE-AAGYRVVGGALAGK----AAEGLEKEAGIQSR 450 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHH----HHH-HcCCeEEEEcCcHH----HHHHHHHhhCCCee
Confidence 4477889999998755 4479999999999976544332 111 13667999999843 34566665565443
Q ss_pred EEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHH
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~ 206 (1601)
.+.+ |. .....+...+..-++||||||.++ +...+..+++..
T Consensus 451 TIas----------~l-----------------l~~~~~~~~l~~~~vlVIDEAsMv---~~~~m~~Ll~~~ 492 (1102)
T PRK13826 451 TLSS----------WE-----------------LRWNQGRDQLDNKTVFVLDEAGMV---ASRQMALFVEAV 492 (1102)
T ss_pred eHHH----------HH-----------------hhhccCccCCCCCcEEEEECcccC---CHHHHHHHHHHH
Confidence 3211 11 000111223455679999999998 334455555543
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.14 E-value=4.5 Score=51.04 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=85.4
Q ss_pred hhhhhHHHHHHHHHHhc-c----------CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHH
Q 000380 56 KQIARKYQLELCKKAME-E----------NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV 124 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~~l~-~----------n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 124 (1601)
...+...|.|++-.+-+ + ..+|.+.-|.||-....-.| +...++ ..|++|++.=+..|--+-.+.
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiI--feNyLk--GRKrAlW~SVSsDLKfDAERD 337 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGII--FENYLK--GRKRALWFSVSSDLKFDAERD 337 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEE--ehhhhc--ccceeEEEEeccccccchhhc
Confidence 34577889999876655 1 35788778888754443344 223332 356788888888887776666
Q ss_pred HHHH--cCCcEEEE--------eCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhc--c-----ccCc-----cc-ee
Q 000380 125 IEES--IGFKVRTF--------CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH--R-----FIKM-----EL-IA 181 (1601)
Q Consensus 125 l~~~--~~l~v~~~--------~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~--~-----~~~l-----~~-i~ 181 (1601)
++.. +++.|..+ .|..+... +-.|+++|+..|.---.. + +-.+ .+ =+
T Consensus 338 L~DigA~~I~V~alnK~KYakIss~en~n~----------krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 338 LRDIGATGIAVHALNKFKYAKISSKENTNT----------KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG 407 (1300)
T ss_pred hhhcCCCCccceehhhcccccccccccCCc----------cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce
Confidence 7664 23433332 22222111 146999999887632221 1 1011 11 27
Q ss_pred EEEEecCccccc------cCCChHHHHHHHHcCCCCCCCCEEEEEecccc
Q 000380 182 LLIFDECHHAQV------KSNHPYAKIMKDFYKPDIMKVPRIFGMTASPV 225 (1601)
Q Consensus 182 llI~DEaH~~~~------~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~ 225 (1601)
+|||||||.+.+ .+.......+..+-... +.-|++--|||--
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L--P~ARVVYASATGA 455 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL--PNARVVYASATGA 455 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhC--CCceEEEeeccCC
Confidence 999999999843 11111222222221111 3467888888853
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.5 Score=57.36 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHHHHh------c-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHH
Q 000380 61 KYQLELCKKAM------E-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118 (1601)
Q Consensus 61 ~yQ~e~~~~~l------~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv 118 (1601)
+-|.++++.++ . .++.|.++-|+|||++.-.++ ...+. .++.+++++||-.-|
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~----~~~~~-~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAII----DYLRS-RGKKVLVTAPTGIAA 63 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHH----HHhcc-ccceEEEecchHHHH
Confidence 45777777763 2 678999999999998654443 23332 356799999984433
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.7 Score=50.02 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=59.5
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC--hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHh
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA-PT--VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEK 151 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~Lv-Pt--~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~ 151 (1601)
+++.+++|+|||.+...++..+ .. .+.+++++. .+ ..-+.|+ +.....+++++.. +......
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l----~~-~g~~V~li~~Dt~R~~a~eqL-~~~a~~lgv~v~~--~~~g~dp------- 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYL----KK-NGFSVVIAAGDTFRAGAIEQL-EEHAERLGVKVIK--HKYGADP------- 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH----HH-cCCeEEEecCCcCcHHHHHHH-HHHHHHcCCceec--ccCCCCH-------
Confidence 5789999999998776665332 21 244555554 32 3334444 4444555665432 1111000
Q ss_pred hhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 152 EIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 152 ~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
...+.+.+... ...+.++||+|.++++. .+.....-++.+.+.. .+...+|.++|+.
T Consensus 208 -----------~~v~~~ai~~~--~~~~~DvVLIDTaGr~~--~~~~lm~eL~~i~~~~-~pd~~iLVl~a~~ 264 (336)
T PRK14974 208 -----------AAVAYDAIEHA--KARGIDVVLIDTAGRMH--TDANLMDELKKIVRVT-KPDLVIFVGDALA 264 (336)
T ss_pred -----------HHHHHHHHHHH--HhCCCCEEEEECCCccC--CcHHHHHHHHHHHHhh-CCceEEEeecccc
Confidence 01112222211 12356899999999974 2223333333333221 1234577777765
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.94 Score=54.61 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHhc--c--CEEEEecCchhHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME--E--NIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~--~--n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+..++...+.+..+.+ + ++++.+|+|+|||..+..+..+
T Consensus 17 ~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred hcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456667777776666 3 6899999999999988777644
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.8 Score=51.72 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHhc----cCEEEEecCchhHHHHHHHHHHH
Q 000380 62 YQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 62 yQ~e~~~~~l~----~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
...+.+..+.. .++++.+|.|+|||..+..+..+
T Consensus 20 ~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 20 DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34444444444 46899999999999888777644
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.61 Score=53.79 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=28.2
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q 120 (1601)
.++++.+++|+|||..+..++.++.. . .+..++|+. ...+..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~---~-~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR---K-KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh---h-cCceEEEEE-HHHHHHH
Confidence 57999999999999988776654322 1 145566654 3455443
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.4 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=19.3
Q ss_pred cCEEEEecCchhHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.++++.+|+|+|||..+......
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999988776543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.00 E-value=2.2 Score=56.81 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhc----cC-EEEEecCchhHHHHHHHHHHH
Q 000380 61 KYQLELCKKAME----EN-IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 61 ~yQ~e~~~~~l~----~n-~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.-.+.|..+++ .+ .|+.+|.|+|||.+|..+.+.
T Consensus 21 e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 21 EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344445555554 23 689999999999998887654
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.2 Score=49.27 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=26.6
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q 120 (1601)
+++.+++|+|||..+.....++.. . +..++++ +...|..+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~---~--~~~v~~~-~~~~ll~~ 156 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE---K--GVPVIFV-NFPQLLNR 156 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---c--CCeEEEE-EHHHHHHH
Confidence 899999999999998876654332 2 3445544 44455443
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.8 Score=53.97 Aligned_cols=56 Identities=27% Similarity=0.410 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhH
Q 000380 59 ARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~L 117 (1601)
..+.|.+.+..+.+ .|+||+++||||||-..-.++.. ....++..+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~---i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAE---IVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHH---HhcCCCCceEEEecCCccc
Confidence 34678888888877 89999999999999765443322 2223445677777777776
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.9 Score=45.44 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=26.8
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~L 117 (1601)
++|.+++|+|||..+...+..... .+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEEEECCcch
Confidence 689999999999988777644322 35567777665444
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.8 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEecCchhHHHHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.|+++|.|+|||.+|-.++..
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 699999999999988877644
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.8 Score=54.39 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=28.9
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAK 123 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 123 (1601)
.+++.+|+|+|||..+.....++. +..++.+++++ +...+..+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYIL---EKNPNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEE-EHHHHHHHHHH
Confidence 478999999999998876654432 22235566666 43455544333
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.04 E-value=2.2 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc----cC-EEEEecCchhHHHHHHHHHHH
Q 000380 62 YQLELCKKAME----EN-IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 62 yQ~e~~~~~l~----~n-~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+-.+.+..++. .+ .|+.++.|+|||.++..+.+.
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 33444555555 23 589999999999998887654
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=88.02 E-value=2 Score=53.27 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=24.5
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA 112 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~Lv 112 (1601)
.+++.+++|+|||..+.....++. +..++.+++++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~---~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEIL---ENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH---HhCCCCcEEEEE
Confidence 368999999999998866654432 223355677764
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=1.7 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.3
Q ss_pred CEEEEecCchhHHHHHHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
++++.+|+|+|||.+|-.+...+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999998876543
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.94 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.0
Q ss_pred cCEEEEecCchhHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~ 94 (1601)
.|++|.+++|+|||..|..+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998877653
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=0.9 Score=59.85 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeC
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCG 138 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G 138 (1601)
+.+-|.+++.. ...+++|.++.|||||.+.+.-+..+... ..-+..++|+|+-|+..+....+.+.+.++..
T Consensus 3 Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~-~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRG-CGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh-cCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 45678888864 34889999999999999887776544321 12234579999999999998888887765410
Q ss_pred CCCcCCchhhHHhhhccCeEEEEcHHHHHH
Q 000380 139 GSKRLKSHCDWEKEIDQYEVLVMIPQILLY 168 (1601)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~ 168 (1601)
. ...|.|+|...|..
T Consensus 75 --~-------------~~~v~i~TfHS~~~ 89 (672)
T PRK10919 75 --E-------------ARGLMISTFHTLGL 89 (672)
T ss_pred --c-------------ccCcEEEcHHHHHH
Confidence 0 13478899887764
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=3.7 Score=51.26 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHH--HHHHHHHHcCCcE
Q 000380 61 KYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ--QAKVIEESIGFKV 133 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q--~~~~l~~~~~l~v 133 (1601)
+.-.+.+..++. +..|+.+|.|+|||.+|-++.+.+.- ..+ |+..-|.+ .+..+.......+
T Consensus 19 e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC----~~~-------~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 19 DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC----SNG-------PTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC----cCC-------CCCCCccccHHHHHHhccCCCCE
Confidence 334445555444 35899999999999988776644321 111 11111111 2333444344566
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHc
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~ 207 (1601)
..+.+.... .....+. +.+...... ...+..++||||+|.+. .+.++.+++.+-
T Consensus 88 ~eidaas~~--~vddIR~--------------Iie~~~~~P-~~~~~KVvIIDEah~Ls---~~A~NaLLK~LE 141 (491)
T PRK14964 88 IEIDAASNT--SVDDIKV--------------ILENSCYLP-ISSKFKVYIIDEVHMLS---NSAFNALLKTLE 141 (491)
T ss_pred EEEecccCC--CHHHHHH--------------HHHHHHhcc-ccCCceEEEEeChHhCC---HHHHHHHHHHHh
Confidence 666554321 1111111 111111111 13567899999999984 445666666653
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.7 Score=49.06 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=17.8
Q ss_pred cCEEEEecCchhHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i 93 (1601)
+.+++.+++|+|||..+....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~ 63 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALV 63 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999998777654
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.1 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=18.0
Q ss_pred cCEEEEecCchhHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.++|+++|.|+|||..|-+...+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc
Confidence 36899999999999877765533
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.1 Score=48.43 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=28.3
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q 120 (1601)
+|+++.+++|+|||..|...+.++.. .+..++|+ +...|+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~-----~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR-----KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEE-EHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc-----CCcceeEe-ecCceecc
Confidence 78999999999999999888755432 34556664 44456543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=87.10 E-value=2.6 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.220 Sum_probs=18.0
Q ss_pred CEEEEecCchhHHHHHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.+++++|||+|||..+..++..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999888777644
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=1.1 Score=53.07 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhH
Q 000380 60 RKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 60 R~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~L 117 (1601)
.+.|.+.+..+.+ +|++|+++||||||-..-.++.. ....++..+++.+-.+.+|
T Consensus 134 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~---~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 134 TAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINE---MVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHh---hhhcCCCceEEEEcCCCcc
Confidence 3568888888766 89999999999999655444322 2222445677877777766
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=5.3 Score=50.66 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=79.6
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC-----CcEEEEeCCCCcCCchh
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG-----FKVRTFCGGSKRLKSHC 147 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~-----l~v~~~~G~~~~~~~~~ 147 (1601)
+-+++..|=-.|||.+....|. .++..-.+.++++.+|....++...+++...+. ..+..+.|+ ... -
T Consensus 255 k~tVflVPRR~GKTwivv~iI~---~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~---i 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIA---LALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TIS---F 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHH---HHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEE---E
Confidence 4678999999999997763332 222233477899999999999998888877532 123233331 110 0
Q ss_pred hHHhhhcc--CeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 148 DWEKEIDQ--YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 148 ~~~~~~~~--~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
.+. .+ ..|.+.+. -..+..+-..++++|||||+-+ ....+..++-.. . ...++++.+|.|-
T Consensus 328 ~f~---nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFI---k~~al~~ilp~l-~---~~n~k~I~ISS~N 390 (738)
T PHA03368 328 SFP---DGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFI---RPDAVQTIMGFL-N---QTNCKIIFVSSTN 390 (738)
T ss_pred Eec---CCCccEEEEEec------cCCCCccCCcccEEEEechhhC---CHHHHHHHHHHH-h---ccCccEEEEecCC
Confidence 000 02 25666532 1233455568999999999999 445566666332 2 1357788887653
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.2 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.7
Q ss_pred cCEEEEecCchhHHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
+..|+.+|.|+|||.+|-.+...+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999988776543
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.75 E-value=1.9 Score=46.72 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=23.9
Q ss_pred ccceeEEEEecCccccccCCChHHHHHHHHc
Q 000380 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 177 l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~ 207 (1601)
..+...||+|||+.+........++.|..|.
T Consensus 111 ~grhKIiILDEADSMT~gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAGAQQALRRTMEIYS 141 (333)
T ss_pred CCceeEEEeeccchhhhHHHHHHHHHHHHHc
Confidence 3667899999999997555556778887763
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.4 Score=51.85 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhH
Q 000380 61 KYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 61 ~yQ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~L 117 (1601)
+-|.+.+..+.+ .|++|+++||||||-..-.++.. +...++..+++.+=.+.+|
T Consensus 119 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~---i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 119 AAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAE---IAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHH---hhccCCCceEEEECCchhh
Confidence 346677777777 79999999999999766544322 2222345678888877776
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.8 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.8
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELA 97 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~ 97 (1601)
+++++.+++|+|||..+..+..++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999887765543
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.39 E-value=0.52 Score=53.33 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=19.2
Q ss_pred cCEEEEecCchhHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~ 94 (1601)
.|+++.+|||||||+.|..+.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk 119 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAK 119 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998887653
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=2.3 Score=54.06 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~ 128 (1601)
+.++++|.+++..+.. +-.++..+=..|||.++...+.. .... .++..+++++|+..-+....+.++..
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~--~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLH--YVCF-NKDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHH--HHHh-CCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 6689999999987643 44578889999999888765432 2222 23568999999988777776666643
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.2 Score=50.36 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=58.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCC-CcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCcccee
Q 000380 105 KSICIFLAPTVALVQQQAKVIEESI--GFKVRTFCGGS-KRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIA 181 (1601)
Q Consensus 105 ~~~vl~LvPt~~Lv~Q~~~~l~~~~--~l~v~~~~G~~-~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~ 181 (1601)
.+.+|||+..--=|....+.++.+- +..|..+.+-. ....+...+.+ ...+|.|+||+++..++..+.+.++++.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~--~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKK--TRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHh--CCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4678888887555666777777653 24455554443 22222222322 2478999999999999999999999999
Q ss_pred EEEEecCcc
Q 000380 182 LLIFDECHH 190 (1601)
Q Consensus 182 llI~DEaH~ 190 (1601)
+||||--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998765
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.17 E-value=3 Score=53.94 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.2
Q ss_pred EEEEecCchhHHHHHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
+|++++.|+|||.++..+.+.+
T Consensus 41 yLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999888776543
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=4.5 Score=51.44 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=44.6
Q ss_pred HHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 65 ELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 65 e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
++++...++-.++.+|=|.|||.+..+.+..+... .+.++++.+|...-+.+..+.++..+
T Consensus 180 ~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 180 RIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred HHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 34444444678999999999999887776444321 25689999999988888787776654
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.1 Score=54.50 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHH
Q 000380 60 RKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 60 R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.++-.+.+..+++ +-+|+++|.|+|||.+|-.+++.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555656555 23599999999999988777644
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.7 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.7
Q ss_pred cCEEEEecCchhHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i 93 (1601)
.++++++++|+|||..+....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~ 66 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAAC 66 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457899999999998765543
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.72 E-value=3.4 Score=49.15 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHH
Q 000380 60 RKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 60 R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.|||...+..+.+ +-.++.+|.|.|||..|..++..
T Consensus 5 yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ 45 (328)
T PRK05707 5 YPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA 45 (328)
T ss_pred CCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH
Confidence 5788888888876 23689999999999888776643
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.9 Score=49.07 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=25.5
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP 113 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvP 113 (1601)
-++|.+++|+|||..+...+..... . .+.+++|+..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~---~-~g~~vly~s~ 50 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAK---K-QGKPVLFFSL 50 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH---h-CCCceEEEeC
Confidence 4789999999999888776644322 1 1456888874
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.60 E-value=1.6 Score=57.45 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.7
Q ss_pred EEEEecCchhHHHHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.|+++|.|+|||.+|-.+...
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 489999999999988877644
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=85.35 E-value=2.2 Score=47.69 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP 113 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvP 113 (1601)
+.|.+|+|+|||........+ ..+..++.+++++..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~---~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANE---AQKQHPGKRVVYLSA 72 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHH---HHHHCTTS-EEEEEH
T ss_pred eEEECCCCCCHHHHHHHHHHH---HHhccccccceeecH
Confidence 799999999999854443322 222234556776654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=3.5 Score=51.43 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=25.5
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP 113 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvP 113 (1601)
.+++++|+|+|||..+.....++ ....++.+++++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l---~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYV---VQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHH---HHhCCCCeEEEEEH
Confidence 47999999999999877665433 22233556777654
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=84.56 E-value=5.6 Score=56.19 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHhc---cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHH
Q 000380 58 IARKYQLELCKKAME---ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~---~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~ 119 (1601)
.+.+-|.+++..++. +-++|.+..|+|||.+.-..+..+..+ ....+..++.++||-.-+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l-~e~~g~~V~glAPTgkAa~ 898 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNML-PESERPRVVGLGPTHRAVG 898 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHH-hhccCceEEEEechHHHHH
Confidence 467899999999986 568999999999998754443222222 1223567889999954443
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=2.8 Score=52.36 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=29.4
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l 125 (1601)
.+++.+++|+|||..+.....++ ....++.+++++.. ..+..+....+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l---~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYI---ESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHH---HHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 37899999999998765443322 22234566776555 45555544444
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.35 E-value=6.2 Score=50.03 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=22.8
Q ss_pred HHHHHHHhc----cC-EEEEecCchhHHHHHHHHHHH
Q 000380 64 LELCKKAME----EN-IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 64 ~e~~~~~l~----~n-~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.+.+..++. .+ .|+++|.|+|||.+|-.+.+.
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 344445544 23 589999999999988877654
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=1.9 Score=56.47 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 58 IARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
.+.+-|.+++... ..+++|.+..|||||.+.+..+..+.... ...+.++|+|+.|+..+....+.+...++
T Consensus 196 ~L~~~Q~~av~~~-~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 196 PLNPSQARAVVNG-EDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCHHHHHHHhCC-CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4667888887643 36789999999999998877764433211 12345799999999999888888877643
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.20 E-value=3.2 Score=53.40 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.0
Q ss_pred EEEEecCchhHHHHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.|+++|.|+|||.+|..+.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 489999999999998887654
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.98 E-value=5.3 Score=51.63 Aligned_cols=35 Identities=31% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcc----C-EEEEecCchhHHHHHHHHHHHH
Q 000380 62 YQLELCKKAMEE----N-IIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 62 yQ~e~~~~~l~~----n-~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
+-.+.+..++.. + .|+.+|.|+|||.+|-.+...+
T Consensus 23 ~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 23 HVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 334455555552 2 4899999999999988876543
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=83.95 E-value=9.5 Score=48.27 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhc----------cCEEEEecCchhHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000380 61 KYQLELCKKAME----------ENIIVYLGTGCGKTHIAVLLIYELAHLI-RKPQKSICIFLAPTVALVQQQAKVIEESI 129 (1601)
Q Consensus 61 ~yQ~e~~~~~l~----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~ 129 (1601)
|+|.-++..++. +.+++..|=|-|||..+..+. +..++ ....+..+++.++++.-+....+.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~--ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIA--LYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHH--HHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 467777766662 357899999999998777665 33333 23345679999999998888888777764
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=83.40 E-value=5.1 Score=42.44 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=56.4
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCc-CCchhhHHhh
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKR-LKSHCDWEKE 152 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~-~~~~~~~~~~ 152 (1601)
..|+.+|.|+||+..|..++..+ +....... -+....-+. .+.....-.+..+..+... .-..+..
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~l---l~~~~~~~---~c~~c~~c~----~~~~~~~~d~~~~~~~~~~~~i~i~~i--- 87 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARAL---LCSNPNED---PCGECRSCR----RIEEGNHPDFIIIKPDKKKKSIKIDQI--- 87 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C-TT-CTT-----SSSHHHH----HHHTT-CTTEEEEETTTSSSSBSHHHH---
T ss_pred eEEEECCCCCCHHHHHHHHHHHH---cCCCCCCC---CCCCCHHHH----HHHhccCcceEEEecccccchhhHHHH---
Confidence 36999999999999888776443 22221111 223222222 3333223445555443321 0111111
Q ss_pred hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
..+.+.+..... ....+++||||||.+. ....+.+++.+-... ...+++.+|-.+
T Consensus 88 -----------r~i~~~~~~~~~-~~~~KviiI~~ad~l~---~~a~NaLLK~LEepp--~~~~fiL~t~~~ 142 (162)
T PF13177_consen 88 -----------REIIEFLSLSPS-EGKYKVIIIDEADKLT---EEAQNALLKTLEEPP--ENTYFILITNNP 142 (162)
T ss_dssp -----------HHHHHHCTSS-T-TSSSEEEEEETGGGS----HHHHHHHHHHHHSTT--TTEEEEEEES-G
T ss_pred -----------HHHHHHHHHHHh-cCCceEEEeehHhhhh---HHHHHHHHHHhcCCC--CCEEEEEEECCh
Confidence 111222222211 2568999999999994 334555555543321 234555555443
|
... |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=83.07 E-value=8.6 Score=50.39 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=60.4
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEE-eCC-hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhh
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL-APT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~L-vPt-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~ 152 (1601)
+.+++|||+|||.+...+...+. .. ..++++.++ +.+ +.=+..|.+.+.+..++++.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~--~~-~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~------------------ 246 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCV--AR-EGADQLALLTTDSFRIGALEQLRIYGRILGVPVH------------------ 246 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHH--HH-cCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc------------------
Confidence 57899999999988777653321 11 122344443 332 21122334445454444321
Q ss_pred hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccc
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP 224 (1601)
++.+|+.+.+.+.. +.+.++|+||=+=+.. .+......+..+... ..+...+|.|+||.
T Consensus 247 ------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~--~d~~l~eel~~l~~~-~~p~e~~LVLsAt~ 305 (767)
T PRK14723 247 ------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQ--RDRNVSEQIAMLCGV-GRPVRRLLLLNAAS 305 (767)
T ss_pred ------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCc--cCHHHHHHHHHHhcc-CCCCeEEEEECCCC
Confidence 23356666555542 3456899999887652 222223333333221 12345678888884
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=83.05 E-value=7 Score=57.50 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=70.9
Q ss_pred hhhhHHHHHHHHHHhc---cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000380 57 QIARKYQLELCKKAME---ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKV 133 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~~l~---~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v 133 (1601)
+.+-+-|.+++..++. +=.||.++.|+|||.+.-.++ ...+ ..+.+++.++||---+ +.+.+-++...
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~----~~~~-~~G~~V~~lAPTgrAA----~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL----HLAS-EQGYEIQIITAGSLSA----QELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH----HHHH-hcCCeEEEEeCCHHHH----HHHHHHhcchh
Confidence 3466789999999887 346999999999997654433 2222 2367899999995543 34444433322
Q ss_pred EEEeCCCCcCCchhhHHhhhccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHH
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~~~~~~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~ 205 (1601)
..+ ..|...+... .-..|.+.|+ .....+..-++||||||-.+ +...+..+++.
T Consensus 499 ~Ti----------~~~l~~l~~~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl---~~~~~~~Ll~~ 552 (1960)
T TIGR02760 499 STF----------ITWVKNLFND-DQDHTVQGLL----DKSSPFSNKDIFVVDEANKL---SNNELLKLIDK 552 (1960)
T ss_pred hhH----------HHHHHhhccc-ccchhHHHhh----cccCCCCCCCEEEEECCCCC---CHHHHHHHHHH
Confidence 111 1232211111 1223444443 12233456789999999998 33345555554
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=83.01 E-value=11 Score=45.86 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=59.2
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEE-EEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhh
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICI-FLAPT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl-~LvPt-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~ 152 (1601)
+++++|+|+|||.++..++..+. .. .+.++. +-+.+ +..+.+|........++.+..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~--~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~----------------- 284 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYF--LH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP----------------- 284 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--Hh--cCCeEEEecccchhhhHHHHHHHHHHhcCCCeee-----------------
Confidence 67899999999998887764321 11 233443 33333 444444444444444433211
Q ss_pred hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCC--CCCCEEEEEeccc
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI--MKVPRIFGMTASP 224 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~--~~~p~ilgLTATP 224 (1601)
+..+..+...+. -.+.++||||=+-+.. .+.....-+..+..... .+...+|-|+||-
T Consensus 285 -------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~--rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 285 -------VKDIKKFKETLA-----RDGSELILIDTAGYSH--RNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCc--cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 011222223232 2467899999765542 22233333444433211 2345688888886
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.87 E-value=8.4 Score=47.62 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=87.0
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhhh-ccCeEE
Q 000380 81 TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI-DQYEVL 159 (1601)
Q Consensus 81 TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~~-~~~~Vl 159 (1601)
+++||+-..++.++++ ++..-.+.+||.+-+.+-+.|.+.++..+-+++|.+++|+.....+.....+.- ..-.|+
T Consensus 366 vF~gse~~K~lA~rq~---v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvL 442 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQL---VASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVL 442 (593)
T ss_pred eeeecchhHHHHHHHH---HhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEE
Confidence 5889998888887654 334445678899999999999999998777899999999976544443333321 235799
Q ss_pred EEcHHHHHHHHhccccCccceeEEEEecCccccccCCChHHHHHHHHcCCCCCCCCEEEEEeccccCCCC
Q 000380 160 VMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKG 229 (1601)
Q Consensus 160 V~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~~~~~p~ilgLTATP~~~~~ 229 (1601)
||| +++.+| +++.++++||-+..-... ..| .+|| |.||++.+...
T Consensus 443 icT-----dll~RG-iDf~gvn~VInyD~p~s~----~sy--------------ihrI-GRtgRag~~g~ 487 (593)
T KOG0344|consen 443 ICT-----DLLARG-IDFKGVNLVINYDFPQSD----LSY--------------IHRI-GRTGRAGRSGK 487 (593)
T ss_pred Eeh-----hhhhcc-ccccCcceEEecCCCchh----HHH--------------HHHh-hccCCCCCCcc
Confidence 999 566666 889999999997765541 111 1344 89999876543
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.77 E-value=6.7 Score=44.22 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCCcCCchhhHHhh
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~~~~ 152 (1601)
+.+++.+|.|+||++.|-....+ ...++|-+.+..|+..|.-+-.++. .
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE---------AnSTFFSvSSSDLvSKWmGESEkLV--------------------k-- 215 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE---------ANSTFFSVSSSDLVSKWMGESEKLV--------------------K-- 215 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh---------cCCceEEeehHHHHHHHhccHHHHH--------------------H--
Confidence 46899999999999877665433 1257888998899887765444331 0
Q ss_pred hccCeEEEEcHHHHHHHHhccccCccceeEEEEecCccccccC----CChHHHHHHHHcCCCC---CCCCEEEEEecc
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKS----NHPYAKIMKDFYKPDI---MKVPRIFGMTAS 223 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~~~~----~~~~~~i~~~~~~~~~---~~~p~ilgLTAT 223 (1601)
+++.- -+-..-+.|.|||++.+.... +..-++|-.+|+-..+ .+...+|.|-||
T Consensus 216 ---------------nLFem--ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 216 ---------------NLFEM--ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred ---------------HHHHH--HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 11110 012345789999999884322 2235667777765433 233445555555
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=4.2 Score=50.59 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=26.3
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~ 119 (1601)
.+++.+|+|+|||..+.....++.. .+.+++++.. ..+..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~-----~~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE-----SGGKILYVRS-ELFTE 182 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEeeH-HHHHH
Confidence 4789999999999988766544322 2455666653 34433
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=82.30 E-value=5.4 Score=48.23 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=23.8
Q ss_pred ccceeEEEEecCccccccCCChHHHHHHHHcCCC
Q 000380 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 177 l~~i~llI~DEaH~~~~~~~~~~~~i~~~~~~~~ 210 (1601)
+..+++|||||.-.+.-........+|+.+....
T Consensus 258 v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg 291 (449)
T TIGR02688 258 VGRWDVVAFDEVATLKFAKPKELIGILKNYMESG 291 (449)
T ss_pred hccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhC
Confidence 4578999999999864223333568899876543
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=8.3 Score=49.50 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc----cC-EEEEecCchhHHHHHHHHHHH
Q 000380 62 YQLELCKKAME----EN-IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 62 yQ~e~~~~~l~----~n-~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+-.+.+..++. .+ .|+.+|.|+|||.+|..++..
T Consensus 20 ~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 20 HVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33444555544 23 589999999999998887654
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=82.12 E-value=5 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.7
Q ss_pred cCEEEEecCchhHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i 93 (1601)
.++++.+|+|+|||.+|-.+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999998876654
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=82.12 E-value=4.6 Score=51.43 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=28.4
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV 124 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 124 (1601)
++|++++|+|||..+..+..++. ....+.+++++.- ..++.+....
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~---~~~~g~~V~Yita-eef~~el~~a 362 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYAR---RLYPGTRVRYVSS-EEFTNEFINS 362 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeH-HHHHHHHHHH
Confidence 88999999999987766553322 2223556666544 4555544333
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.10 E-value=7.9 Score=50.03 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHH
Q 000380 61 KYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.-...+..++. +.+|+.+|.|+|||.+|..+...
T Consensus 22 e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 22 EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 333444444444 34799999999999988877644
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=81.91 E-value=4.1 Score=48.80 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.8
Q ss_pred cCEEEEecCchhHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i 93 (1601)
.++++.+|+|+|||..+....
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 468999999999998877554
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=81.86 E-value=2.7 Score=56.19 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
+.+-|.+++.. ...+++|.++.|||||.+.+.-+..+... ..-+...+|+|+-|+..+....+.+.+.++
T Consensus 10 Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~vl~~Ria~Li~~-~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA-PLGNMLVLAGAGSGKTRVLVHRIAWLMQV-ENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHc-CCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 66789998874 34789999999999999877766443221 122345799999999999998888888654
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=81.85 E-value=9.2 Score=49.19 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHH
Q 000380 60 RKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 60 R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.++-.+.+..+++ +-.|+++|.|+|||.+|-.+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455555554 23688999999999988877644
|
|
| >PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function | Back alignment and domain information |
|---|
Probab=81.85 E-value=4.7 Score=37.51 Aligned_cols=79 Identities=25% Similarity=0.303 Sum_probs=54.2
Q ss_pred ccchhhhHHHHHHHHHH--HhhCCCCCcchhHHHHhhhhccHHHHHHHHHcCCcccccccCCCCCccccCCCCccccccc
Q 000380 1042 LEILGDAFLKYAVGRHL--FLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSK 1119 (1601)
Q Consensus 1042 LE~LGDs~Lk~~~s~~l--~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~ 1119 (1601)
|.-+|||...|+.|.-| |.-+|.-. -|-|..|+..-...||.+.+. | +
T Consensus 3 Lak~GDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiAl~~a~L~~~~~-----------P-----R---- 52 (120)
T PF11469_consen 3 LAKFGDSLVNFLFSLALSEYLGRPTGD----------RVPNASLAIALELAGLSHLLP-----------P-----R---- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS------------------C----
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHHhhhhhCc-----------c-----c----
Confidence 56799999999999887 55556533 388999999888889888875 1 0
Q ss_pred hhhhhhccccCCCCCCCcccccccCCCccccchhhHHHHHHHHhhccccccC--hHHHHHHHH
Q 000380 1120 ETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSG--FKAATAFLK 1180 (1601)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lAD~~EAliGA~~~~~g--~~~a~~~~~ 1180 (1601)
+....-.|..||+|.-+|+.+- .+.|..+++
T Consensus 53 ------------------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 ------------------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp ------------------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ------------------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 0133457999999999999876 456666654
|
; PDB: 1ZTD_A. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=81.82 E-value=6.5 Score=50.70 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHHH
Q 000380 60 RKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 60 R~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
.+...+.+..++. +..|+.+|.|+|||..|..+...+
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3444455555554 348999999999999988876543
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=81.79 E-value=6.8 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.7
Q ss_pred cCEEEEecCchhHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.+++.+|+|+|||..+-.++.+
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999887766533
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.73 E-value=4.8 Score=53.04 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.9
Q ss_pred cCEEEEecCchhHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLI 93 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i 93 (1601)
.++|+.+|+|+|||..|-.+.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998876654
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=81.71 E-value=8.6 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=18.2
Q ss_pred cCEEEEecCchhHHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.+.+++|||+|||..+..++..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999888766543
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=81.64 E-value=2.4 Score=56.67 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~~~~ 130 (1601)
+-+-|.+++.. ...+++|.+..|||||.+.+.-+..+... ..-+..++|+|+-|+..+....+.+.+.++
T Consensus 5 Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria~Li~~-~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIAWLLSV-ENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHHHHHHc-CCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 55789998864 34789999999999999877766443221 122345799999999999998888888654
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=4.8 Score=53.27 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHH-HhhcccCCCceEEEEecchhhHHHHHHHHHhcccccccccceEEeccCCCCcCCHHHHHHHHHHHh
Q 000380 403 PFFSKKLLRLIGI-LSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFR 481 (1601)
Q Consensus 403 ~~~s~K~~~L~~l-L~~~~~~~~~k~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~~l~~Fr 481 (1601)
+.-++|.....-. +... ..+.+++|.++++.-|...++.++......+++ +..++| +++..+|.++++...
T Consensus 290 ~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~---v~ll~G---~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 290 DVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIR---VALLTG---SLKGKERREILEAIA 361 (681)
T ss_pred CCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcE---EEEEcC---CCCHHHHHHHHHHHh
Confidence 3347777644333 3322 346799999999999998888887653211223 223344 588899999999999
Q ss_pred cCCccEEEEec-ccccCccCCCccEEE
Q 000380 482 SGELNLLVATK-VGEEGLDIQTCCLVI 507 (1601)
Q Consensus 482 ~g~~~vLVaT~-vleeGIDip~~~~VI 507 (1601)
+|+.+|+|+|. .+...+.+.++.+||
T Consensus 362 ~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 362 SGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCCCCEEEchHHHhcccchhcccceEE
Confidence 99999999995 455667788888777
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=81.48 E-value=0.79 Score=49.32 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=27.2
Q ss_pred hccCeEEEEcHHHHHHHHhccccC--ccceeEEEEecCcccc
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIK--MELIALLIFDECHHAQ 192 (1601)
Q Consensus 153 ~~~~~VlV~Tp~~l~~~l~~~~~~--l~~i~llI~DEaH~~~ 192 (1601)
...++|||+++.-|++......+. ..+-.+|||||||++.
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 346899999999888654333221 1234799999999994
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=81.47 E-value=5.1 Score=49.85 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=32.4
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcE
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT-VALVQQQAKVIEESIGFKV 133 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~l~~~~~l~v 133 (1601)
+.+++|||+|||.+...+...+. .+.+..+..++-+.+ +.=+.+|.+.+.+..++.+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~--~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCV--MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHH--HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 57899999999988877764321 122222333333333 3334455666666656544
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.25 E-value=15 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=18.5
Q ss_pred CEEEEecCchhHHHHHHHHHHH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
-.++.+|.|+||+..|..++..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~ 64 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARF 64 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999988877654
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=81.23 E-value=6 Score=49.28 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=57.2
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHH-HHHcCCcEEEE-eCCCCc--CCchhhH
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI-EESIGFKVRTF-CGGSKR--LKSHCDW 149 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l-~~~~~l~v~~~-~G~~~~--~~~~~~~ 149 (1601)
=++|.+++|+|||..++..+..+.. ..+..++|+.-- .=..|....+ ....++....+ .|.... +.....+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~----~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 270 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVAL----REGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNA 270 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH----hCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 3689999999999988877644321 125567777632 2234444333 33344443332 222211 0111111
Q ss_pred HhhhccCeEEEE-----cHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 150 EKEIDQYEVLVM-----IPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 150 ~~~~~~~~VlV~-----Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
...+.+..+.|. |.+.+.....+-......+++||||=.|.+.
T Consensus 271 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 222333455553 3444443332211112258899999888874
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.14 E-value=2.3 Score=52.44 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCEEEEecCchhHHHHHHHHHHHHHHHhcCCC-CcEEEEEeCChhHHHHHHHHH
Q 000380 63 QLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ-KSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 63 Q~e~~~~~l~~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~-~~~vl~LvPt~~Lv~Q~~~~l 125 (1601)
|-+++..-.++-+||.+..|||||-+|+-.+..+..-.+.+- ++.+|++.|.+.+..=...++
T Consensus 217 QneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 217 QNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred HHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc
Confidence 444443322244789999999999999887765544444332 445999999988766444444
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=81.12 E-value=15 Score=45.22 Aligned_cols=57 Identities=18% Similarity=0.021 Sum_probs=35.6
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcEEEE
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA--PTVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~Lv--Pt~~Lv~Q~~~~l~~~~~l~v~~~ 136 (1601)
+.+++++|+|||..+.-++..+. .. ++++++++ +.++-+.+|.+...+..++++...
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~----~~-G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~ 161 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQ----RK-GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGS 161 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH----HC-CCCEEEEcCcccchhHHHHHHHHhhccCCeEEee
Confidence 57899999999988877664332 22 44455444 335566666666666666665443
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.12 E-value=7.6 Score=47.82 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcc-----CEEEEecCchhHHHHHHHHHHH
Q 000380 61 KYQLELCKKAMEE-----NIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 61 ~yQ~e~~~~~l~~-----n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.-.+.+..++++ ..|+.+|.|+|||.+|..+...
T Consensus 22 ~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 22 EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 3334455555552 3789999999999998877644
|
|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.07 E-value=3.8 Score=51.68 Aligned_cols=80 Identities=15% Similarity=-0.016 Sum_probs=59.0
Q ss_pred CCCCCCchhhhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 49 QKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR-KPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 49 ~~~~~~~~~~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l~~~~~-~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
+.++..+..++-+-|..+++..+. +=.|+.+|.|+|||++.+.++..+..... ....-.++++|=|..-++|....+-
T Consensus 369 lePp~~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 369 LEPPGPGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred cCCCCCCceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 344445555677889999999888 67899999999999999888755432110 1123469999999999999877776
Q ss_pred HH
Q 000380 127 ES 128 (1601)
Q Consensus 127 ~~ 128 (1601)
.+
T Consensus 449 ~~ 450 (1025)
T KOG1807|consen 449 YH 450 (1025)
T ss_pred hc
Confidence 43
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=81.02 E-value=5.9 Score=45.98 Aligned_cols=114 Identities=17% Similarity=0.040 Sum_probs=55.9
Q ss_pred cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEEeCCC-CcCCchhhHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE-SIGFKVRTFCGGS-KRLKSHCDWE 150 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~~-~~~l~v~~~~G~~-~~~~~~~~~~ 150 (1601)
.-++|.+++|+|||..+...+..+.. ..+.+++|+.-- .-..+....+.. ..+..+....... ........|.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~----~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT----QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH----hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 45789999999999877766543321 125567777643 223444444433 2344332211100 0011112222
Q ss_pred hhhcc-CeEEEE------cHHHHHHHHhccccCccceeEEEEecCcccc
Q 000380 151 KEIDQ-YEVLVM------IPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 151 ~~~~~-~~VlV~------Tp~~l~~~l~~~~~~l~~i~llI~DEaH~~~ 192 (1601)
..+.. ..+.+. |.+.+...+... ....++++||||..+.+.
T Consensus 106 ~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~ 153 (271)
T cd01122 106 DEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMV 153 (271)
T ss_pred HHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHh
Confidence 22221 222221 444444444321 122367899999988874
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=80.61 E-value=5.9 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=17.7
Q ss_pred cCEEEEecCchhHHHHHHHHHH
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 73 ~n~Iv~~~TGsGKTlia~l~i~ 94 (1601)
+.+++++|+|+|||..+..+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999988776653
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.53 E-value=8.5 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=17.7
Q ss_pred EEEEecCchhHHHHHHHHHHH
Q 000380 75 IIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 75 ~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
.++++|.|+|||.+|..++..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 399999999999988776644
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=80.37 E-value=5.4 Score=49.26 Aligned_cols=55 Identities=25% Similarity=0.197 Sum_probs=32.8
Q ss_pred CEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcE
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA-PT-VALVQQQAKVIEESIGFKV 133 (1601)
Q Consensus 74 n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~Lv-Pt-~~Lv~Q~~~~l~~~~~l~v 133 (1601)
.+++++++|+|||.++..++..+.. . +++++++. .+ ++-+.+|...+....++++
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~----~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK----K-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH----c-CCeEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 4689999999999988877644322 2 34444443 33 3334445555555555543
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.37 E-value=44 Score=41.83 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHhc-----------cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHHHHHHHHHH
Q 000380 58 IARKYQLELCKKAME-----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE 126 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~l~ 126 (1601)
.+-|||.-++-.++. +-.+|.+|-|-|||..+..++.... +.....+..+.+++|+..-+.+....++
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~-l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTAL-LLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHH-HhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 467899999988884 2358999999999877765543322 2222446679999999877777666665
Q ss_pred HHcC-CcEEEEeCCCCcCCchhhHHhhhccCeEEEEc--HHHHHHHHh--ccccCccceeEEEEecCccccccCCChHHH
Q 000380 127 ESIG-FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMI--PQILLYCLY--HRFIKMELIALLIFDECHHAQVKSNHPYAK 201 (1601)
Q Consensus 127 ~~~~-l~v~~~~G~~~~~~~~~~~~~~~~~~~VlV~T--p~~l~~~l~--~~~~~l~~i~llI~DEaH~~~~~~~~~~~~ 201 (1601)
...- .+ +... ... ...+.+.|.- -...+..+. .....-.+..+.||||.|.....+ ..|+.
T Consensus 140 ~mv~~~~------~l~~------~~~-~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~~ 205 (546)
T COG4626 140 DMVKRDD------DLRD------LCN-VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYSE 205 (546)
T ss_pred HHHHhCc------chhh------hhc-cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHHH
Confidence 5321 00 0000 000 0011111110 000111111 123334456899999999984211 23444
Q ss_pred HHHHHcCCCCCCCCEEEEEeccccCCCCCccccchHHHHHHHHHhccC
Q 000380 202 IMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA 249 (1601)
Q Consensus 202 i~~~~~~~~~~~~p~ilgLTATP~~~~~~~~~~~l~~~i~~Le~~l~~ 249 (1601)
+....-. .+.+.+++.|-++....+ -+.+.......+++.
T Consensus 206 ~~~g~~a---r~~~l~~~ITT~g~~~~g-----~~~q~~~y~k~vl~g 245 (546)
T COG4626 206 AKGGLGA---RPEGLVVYITTSGDPPAG-----VFKQKLQYAKDVLDG 245 (546)
T ss_pred HHhhhcc---CcCceEEEEecCCCCCcc-----HHHHHHHHHHHHhcC
Confidence 3333211 234778888764433222 234455555555554
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.18 E-value=11 Score=44.67 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHhc--------cCEEEEecCchhHHHHHHHHHHH
Q 000380 59 ARKYQLELCKKAME--------ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 59 ~R~yQ~e~~~~~l~--------~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+.|+|..+++.+.+ +-.++.+|.|+||+..|..++..
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~ 49 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEH 49 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHH
Confidence 45677776665554 23789999999999988777644
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.15 E-value=0.36 Score=55.99 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHhc-cCEEEEecCchhHHHHHHHHHHHH
Q 000380 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 58 ~~R~yQ~e~~~~~l~-~n~Iv~~~TGsGKTlia~l~i~~l 96 (1601)
.|.+.|.|++.-++. .+++.+++||||||-++.+||..+
T Consensus 24 lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqi 63 (725)
T KOG0349|consen 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 63 (725)
T ss_pred cccccccccccEEecCCcEEEEeccCCCCccceehhhHHH
Confidence 477899999999999 899999999999999999998654
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=80.08 E-value=4.9 Score=53.97 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=65.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcC-CcEEEEeCCCCcCCchhhHHhhh-ccCeEEEEcHHHHHHHHhccccCccceeE
Q 000380 105 KSICIFLAPTVALVQQQAKVIEESIG-FKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIAL 182 (1601)
Q Consensus 105 ~~~vl~LvPt~~Lv~Q~~~~l~~~~~-l~v~~~~G~~~~~~~~~~~~~~~-~~~~VlV~Tp~~l~~~l~~~~~~l~~i~l 182 (1601)
++.+.+|.|.++=..+.++.++...+ .++++.+|.+....-........ ..+||+|||. .+ ..-+++.+.+.
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----II-EtGIDIPnANT 876 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----II-ETGIDIPNANT 876 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----ee-ecCcCCCCCce
Confidence 67899999999999999999999886 89999999998654444333332 3589999993 33 34578899999
Q ss_pred EEEecCcccc
Q 000380 183 LIFDECHHAQ 192 (1601)
Q Consensus 183 lI~DEaH~~~ 192 (1601)
|||+-||+++
T Consensus 877 iIIe~AD~fG 886 (1139)
T COG1197 877 IIIERADKFG 886 (1139)
T ss_pred EEEecccccc
Confidence 9999999983
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=80.04 E-value=2.1 Score=51.02 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=32.7
Q ss_pred HHHHHHHhc--cCEEEEecCchhHHHHHHHHHHHHHHHhcCCCCcEEEEEeCChhHH
Q 000380 64 LELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118 (1601)
Q Consensus 64 ~e~~~~~l~--~n~Iv~~~TGsGKTlia~l~i~~l~~~~~~~~~~~vl~LvPt~~Lv 118 (1601)
.+.+..+.+ .|++|+++||||||...-.++. .+ +...+++.+=++.+|.
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~----~i--~~~~rivtiEd~~El~ 202 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLIS----AI--PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHHHHHHc----cc--CCCCCEEEECCCcccc
Confidence 345555655 8999999999999975544331 11 3345677777777663
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.03 E-value=7.1 Score=50.86 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhc-----cCEEEEecCchhHHHHHHHHHHH
Q 000380 61 KYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 61 ~yQ~e~~~~~l~-----~n~Iv~~~TGsGKTlia~l~i~~ 95 (1601)
+...+.+..+++ +-.|+++|.|+|||.+|-.++..
T Consensus 24 e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 24 DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344455555555 22589999999999988776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1601 | ||||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 2e-31 | ||
| 3c4b_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 2e-29 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 1e-28 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 2e-28 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 3e-28 | ||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 1e-26 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 2e-26 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 7e-26 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 8e-26 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 1e-25 | ||
| 4a2q_A | 797 | Structure Of Duck Rig-I Tandem Cards And Helicase D | 2e-25 | ||
| 4a2p_A | 556 | Structure Of Duck Rig-I Helicase Domain Length = 55 | 3e-25 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 1e-17 | ||
| 3o2r_D | 144 | Structural Flexibility In Region Involved In Dimer | 4e-15 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 2e-14 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 4e-14 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 1e-10 | ||
| 1yyk_A | 221 | Crystal Structure Of Rnase Iii From Aquifex Aeolicu | 9e-09 | ||
| 1yz9_A | 221 | Crystal Structure Of Rnase Iii Mutant E110q From Aq | 2e-08 | ||
| 1yyo_A | 221 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-08 | ||
| 1rc7_A | 220 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-08 | ||
| 2ez6_A | 221 | Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 | 4e-08 | ||
| 1i4s_A | 147 | Crystal Structure Of Rnase Iii Endonuclease Domain | 8e-08 | ||
| 1jfz_A | 154 | Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En | 9e-08 | ||
| 3b6e_A | 216 | Crystal Structure Of Human Dech-Box Rna Helicase Md | 1e-07 | ||
| 2a11_A | 242 | Crystal Structure Of Nuclease Domain Of Ribonuclase | 2e-07 | ||
| 2ffl_A | 756 | Crystal Structure Of Dicer From Giardia Intestinali | 2e-06 | ||
| 2ffl_A | 756 | Crystal Structure Of Dicer From Giardia Intestinali | 9e-05 | ||
| 1o0w_A | 252 | Crystal Structure Of Ribonuclease Iii (Tm1102) From | 5e-06 | ||
| 3rv0_A | 341 | Crystal Structure Of K. Polysporus Dcr1 Without The | 2e-05 | ||
| 3rv1_A | 246 | Crystal Structure Of The N-Terminal And Rnase Iii D | 6e-05 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 7e-05 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 7e-05 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 7e-05 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 7e-05 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 8e-05 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 8e-05 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 1e-04 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 2e-04 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 2e-04 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 2e-04 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 3e-04 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 3e-04 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 3e-04 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 6e-04 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 7e-04 |
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
|
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain Length = 797 | Back alignment and structure |
|
| >pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain Length = 556 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
|
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 | Back alignment and structure |
|
| >pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 | Back alignment and structure |
|
| >pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 | Back alignment and structure |
|
| >pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 | Back alignment and structure |
|
| >pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain Length = 216 | Back alignment and structure |
|
| >pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 | Back alignment and structure |
|
| >pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis Length = 756 | Back alignment and structure |
|
| >pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis Length = 756 | Back alignment and structure |
|
| >pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 | Back alignment and structure |
|
| >pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 | Back alignment and structure |
|
| >pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 312 bits (800), Expect = 3e-93
Identities = 138/545 (25%), Positives = 223/545 (40%), Gaps = 36/545 (6%)
Query: 59 ARKYQLELCKKAM-EENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117
R YQLEL A +N I+ TGCGKT +++L+ QK +F A + +
Sbjct: 5 PRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPV 64
Query: 118 VQQQAKVIEESI---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF 174
+QQA V G+ + + G + S + I+ +++++ PQIL+ L +
Sbjct: 65 YEQQATVFSRYFERLGYNIASISGATSDSVS---VQHIIEDNDIIILTPQILVNNLNNGA 121
Query: 175 I-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK----VPRIFGMTASPVVGKG 229
I + + L+IFDECH+ NHPY +IM + + + +P++ G+TAS VG
Sbjct: 122 IPSLSVFTLMIFDECHNT--SKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDA 179
Query: 230 ASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287
+A+ + + I L LDA V + ++ +LE V P + ++T ++
Sbjct: 180 KTAEEAM-QHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFC--------LENLGVCG 339
+ E + L + T K + K C E VC
Sbjct: 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCK 298
Query: 340 ALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEV 399
AL L +A+ + L F E R+ +E
Sbjct: 299 ALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEE 358
Query: 400 LKEP-----FFSKKLLRLIGIL-STFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L++ + KL L +L + L+ K I+FV AL ++ L+
Sbjct: 359 LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL 418
Query: 454 RCHFLVGVN--AGLKSMSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQTCCLVIRFD 510
+ L G M+ A K +LE FR SG+ N+L+AT V +EG+DI C LVI ++
Sbjct: 419 KPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478
Query: 511 LPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAF 570
V IQ+RGR R S+ L S + E + K +E MN I+ + D
Sbjct: 479 YVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEKE--KANMIKEKIMNESILRLQTWDEM 536
Query: 571 TCSEE 575
+
Sbjct: 537 KFGKT 541
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 309 bits (791), Expect = 6e-92
Identities = 125/550 (22%), Positives = 234/550 (42%), Gaps = 48/550 (8%)
Query: 59 ARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117
AR YQ+EL + A+ +N ++ TG GKT +++L+ + +K+ +FLA V +
Sbjct: 8 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 67
Query: 118 VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-K 176
+QQ V + + + G S S+ EK I+ +++V+ PQIL+ +
Sbjct: 68 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTS 127
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM---KVPRIFGMTASPVVGKGASAQ 233
+ + L+IFDECH+ NHPY +M + + ++P+I G+TAS VG + +
Sbjct: 128 LSIFTLMIFDECHNTT--GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 185
Query: 234 ANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC--- 288
+ + I SL + LD + S E+ ++L+ F++ P + V I++ ++ ++
Sbjct: 186 ETI-EHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 244
Query: 289 -------------------SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMK 329
+ E +I RK Q ++ +R+ ++
Sbjct: 245 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK--EEESRICRALF 302
Query: 330 FCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDG 389
C E+L +++S D + + L + + + A ++
Sbjct: 303 ICTEHLRKYND----ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 358
Query: 390 IASDLSCIEVLKEPFFSKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLK 448
LS E + P KL L+ IL +R + ++F AL ++
Sbjct: 359 ELIALSKDETNENP----KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENP 414
Query: 449 FLASWRCHFLVGVNA--GLKSMSRNAMKSILEKFRSGELN-LLVATKVGEEGLDIQTCCL 505
L + L+G M+ + K +L+ F++ + N LL+AT V +EG+DI C L
Sbjct: 415 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 474
Query: 506 VIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRT 565
V+ ++ V IQ RGR R S+ + E + + E+ MN+ +
Sbjct: 475 VVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYK--EEMMNKAVEKIQ 532
Query: 566 SSDAFTCSEE 575
D T +++
Sbjct: 533 KWDEETFAKK 542
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = 1e-90
Identities = 147/660 (22%), Positives = 237/660 (35%), Gaps = 48/660 (7%)
Query: 48 AQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKS 106
T+ R YQLEL AM+ +N I+ TGCGKT +++L+ + QK
Sbjct: 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG 62
Query: 107 ICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQIL 166
+F A + + +Q V + G S + E+ ++ +++++ PQIL
Sbjct: 63 KVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 122
Query: 167 LYCLYHRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMT 221
+ L I + + L+IFDECH+ HPY IM ++ + +P++ G+T
Sbjct: 123 VNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT 180
Query: 222 ASPVVGKGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQY----G 275
AS VG + L I L LDA V + + E+LE V P +
Sbjct: 181 ASVGVGDAKTTDEAL-DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239
Query: 276 PVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCL--- 332
+ + +E LA+ + + + + + + + M F +
Sbjct: 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 299
Query: 333 -ENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIA 391
E +C AL L A D L F S +D
Sbjct: 300 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 359
Query: 392 SDLSCIEVLKEP-----FFSKKLLRLIGIL-STFRLQQHMKCIVFVNRIVTARALSYILQ 445
++ L+ + KL L IL + L I+FV AL ++
Sbjct: 360 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE 419
Query: 446 NLKFLASWRCHFLVGVN--AGLKSMSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQT 502
L+ + L G M+ A K IL+ F+ SG+ N+L+AT V +EG+DI
Sbjct: 420 GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479
Query: 503 CCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
C LVI ++ V IQ+RGR R S+ L + E + I + E MN I+
Sbjct: 480 CNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK--EKMMNDSIL 537
Query: 563 DRTSSD---------AFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPH--DEFFNP 611
+ D E+ I + LL R C L +
Sbjct: 538 RLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVI 597
Query: 612 KPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDY 671
+ Y C + P P ++ + + C H G Y
Sbjct: 598 EDCHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKI-FCARQNC------SHDWGIHVKY 650
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 1e-86
Identities = 116/510 (22%), Positives = 197/510 (38%), Gaps = 43/510 (8%)
Query: 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ + K E N ++ L TG GKT IA+++ L + K + LAPT LV
Sbjct: 10 PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEY--RLTKYGGKVL--MLAPTKPLV 65
Query: 119 QQQAKVIEESIGF---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
Q A+ K+ G + K + +V+V PQ + L I
Sbjct: 66 LQHAESFRRLFNLPPEKIVALTGEKSPEE----RSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+E ++L++FDE H A N+ Y I +++ + K P + G+TASP +
Sbjct: 122 SLEDVSLIVFDEAHRA--VGNYAYVFIAREYKRQA--KNPLVIGLTASPGSTPEKIMEV- 176
Query: 236 LPKSINSLENLLDAKVYSV-EDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
+ NL + E++ D+ +V + D Y + L E
Sbjct: 177 -------INNLGIEHIEYRSENSPDVRPYVKGIRFEWVRV-----DLPEIYKEVRKLLRE 224
Query: 295 IKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETM 354
+ R+ L + S K++ R + + Y ++
Sbjct: 225 MLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHH 284
Query: 355 RNELIEAEGNT-IDDSLCRFASQASEVFAAICRRDGIASDLS-----CIEVLKEPFFSKK 408
EL+E +G + + + + +A + + ++ + K
Sbjct: 285 AIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPK 344
Query: 409 LLRLIGILS-TFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVG--VNAGL 465
+ +L I+ + +Q+ K IVF N TA+ + L + VG
Sbjct: 345 MDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI----KAKRFVGQASKEND 400
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR- 524
+ +S+ K IL++F GE N+LVAT VGEEGLD+ LV+ ++ + IQ RGR
Sbjct: 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 460
Query: 525 ARMPQSEYAFLVDSGNQRELDLIKNFSKEE 554
R L+ G + E + KE+
Sbjct: 461 GRHMPGRVIILMAKGTRDEAYYWSSRQKEK 490
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 292 bits (748), Expect = 8e-84
Identities = 125/546 (22%), Positives = 226/546 (41%), Gaps = 28/546 (5%)
Query: 53 KDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL 111
+ AR YQ+EL + A+ +N ++ TG GKT +++L+ + +K+ +FL
Sbjct: 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302
Query: 112 APTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
A V + +QQ V + + + G S S+ EK I+ +++V+ PQIL+
Sbjct: 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE 362
Query: 172 H-RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM---KVPRIFGMTASPVVG 227
+ + L+IFDECH+ NHPY +M + + ++P+I G+TAS VG
Sbjct: 363 DGTLTSLSIFTLMIFDECHNT--TGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
Query: 228 KGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285
+ + + + I SL + LD + S E+ ++L+ F++ P + V I++ ++
Sbjct: 421 NAKNIEETI-EHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479
Query: 286 VTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENL----GVCGAL 341
++ E S + + + + + K L L
Sbjct: 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 539
Query: 342 HASYILLSGDETMRNELIEAEGNTIDD---SLCRFASQASEVFAAICRRDGIASDLSCIE 398
A +I + LI +E I D L F + + A
Sbjct: 540 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 599
Query: 399 VL-----KEPFFSKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452
L E + KL L+ IL +R + ++F AL ++ L
Sbjct: 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNY 659
Query: 453 WRCHFLVGVN--AGLKSMSRNAMKSILEKFRSGELN-LLVATKVGEEGLDIQTCCLVIRF 509
+ L+G M+ + K +L+ F++ + N LL+AT V +EG+DI C LV+ +
Sbjct: 660 IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719
Query: 510 DLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDA 569
+ V IQ RGR R S+ + E + + +E+ MN+ + D
Sbjct: 720 EYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRY--KEEMMNKAVEKIQKWDE 777
Query: 570 FTCSEE 575
T +++
Sbjct: 778 ETFAKK 783
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 295 bits (755), Expect = 1e-83
Identities = 126/583 (21%), Positives = 235/583 (40%), Gaps = 34/583 (5%)
Query: 53 KDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL 111
+ AR YQ+EL + A+ +N ++ TG GKT +++L+ + +K+ +FL
Sbjct: 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302
Query: 112 APTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
A V + +QQ V + + + G S S+ EK I+ +++V+ PQIL+
Sbjct: 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE 362
Query: 172 HRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM---KVPRIFGMTASPVVG 227
+ + + L+IFDECH+ NHPY +M + + ++P+I G+TAS VG
Sbjct: 363 DGTLTSLSIFTLMIFDECHNTT--GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
Query: 228 KGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285
+ + + + I SL + LD + S E+ ++L+ F++ P + V I++ ++
Sbjct: 421 NAKNIEETI-EHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479
Query: 286 VTC--SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKF--CLENLGVCGAL 341
++ SE A ++ Y+ LS+ +N + + +
Sbjct: 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 539
Query: 342 HASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEV----FAAICRRDGIASDLSCI 397
A +I + LI +E I D+L + V + + +
Sbjct: 540 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 599
Query: 398 EVLK----EPFFSKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452
E++ E + KL L+ IL +R + ++F AL ++ L
Sbjct: 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNY 659
Query: 453 WRCHFLVGVNA--GLKSMSRNAMKSILEKFRSGELN-LLVATKVGEEGLDIQTCCLVIRF 509
+ L+G M+ + K +L+ F++ + N LL+AT V +EG+DI C LV+ +
Sbjct: 660 IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719
Query: 510 DLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEE--------DRMNREI 561
+ V IQ RGR R S+ + E + + +E + + E
Sbjct: 720 EYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEET 779
Query: 562 MDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLP 604
+ + +LL C
Sbjct: 780 FAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLLCGKCKAYA 822
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-64
Identities = 86/257 (33%), Positives = 128/257 (49%), Gaps = 25/257 (9%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVY 1268
T E + ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY
Sbjct: 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDP 73
Query: 1269 PKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMI------- 1321
+ PG LTDLRS LVNN FA++AV ++K+ S L I+++V + +
Sbjct: 74 RQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQG 133
Query: 1322 ------TPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF 1375
E +E PK +GD+ ES GAI +DSG +L VW++ + P+++
Sbjct: 134 MDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEK 193
Query: 1376 SNLQL--NPIRELLELCNSYDLDLQF-PSLKKGGKFLAEAKVTGKDKDVFISACATNLSR 1432
+ + +P+RELLE+ + K +V GK K S
Sbjct: 194 FSANVPRSPVRELLEMEPETAKFSPAERTYDG--KVRVTVEVVGKGK-----FKGVGRSY 246
Query: 1433 KEAIRIASQQLFSKLKA 1449
+ A A+++ LKA
Sbjct: 247 RIAKSAAARRALRSLKA 263
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 3e-20
Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 19/197 (9%)
Query: 990 PSIMHRLENLLVAIE-LKHLLSASFPEGAEVSAEMLLKALTTEKCQERF---SLERLEIL 1045
P L +L+ E + ++ F + LL+A T +RLE L
Sbjct: 2 PDAEKTLNHLISGFETFEKKINYRF-----KNKAYLLQAFTHASYHYNTITDCYQRLEFL 56
Query: 1046 GDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQ 1105
GDA L Y + +HL+ G LT RS VNN+ LA + + Y + +
Sbjct: 57 GDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK---AVSPE 113
Query: 1106 FFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGA 1165
F + + ++ E R+ +D E K + D+ E+L GA
Sbjct: 114 LFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEV------PKAMGDIFESLAGA 167
Query: 1166 FIDDSGFKAATAFLKWI 1182
DSG + +
Sbjct: 168 IYMDSGMSLEVVW-QVY 183
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 3e-58
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 42 AESSVGAQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYE-LAHL 99
++ A + +P+ R YQ+E+ + A+E +NII+ L TG GKT +AV + + L
Sbjct: 17 SDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKK 76
Query: 100 IRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVL 159
+ + I L V LV+Q + + K G S + + + + +++
Sbjct: 77 KKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDII 136
Query: 160 VMIPQILLYCLY------HRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK----- 208
+ QIL L +++ +L+I DECHH Y IM+ +
Sbjct: 137 ISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT--NKEAVYNNIMRHYLMQKLKN 194
Query: 209 -------PDIMKVPRIFGMTAS 223
++ +P+I G+TAS
Sbjct: 195 NRLKKENKPVIPLPQILGLTAS 216
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-32
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 587 ISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTICHIILPANAPIHQIVGTPQ 644
IS G +S++++YCS+LPHDEFF PKP+F + D+ GGTIC I LPANAPI +I +
Sbjct: 1 ISGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLL 60
Query: 645 SSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEP 684
S EAAKKDACLKA+ +LH LG LND+LLP + EDE
Sbjct: 61 PSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDEL 100
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-31
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 1199 SSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDY 1258
+ + +A ++ LE L ++F + LL+ A H SF + +RLEFLGDAVLD
Sbjct: 15 TENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY-NNERLEFLGDAVLDL 73
Query: 1259 LITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD 1318
++ YL+ + K G L+ LR+ LVN ++FA +A + F++
Sbjct: 74 VVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILM-------------- 119
Query: 1319 YMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK 1374
S E G P +L D +E+ +GAI L++GF I L ++
Sbjct: 120 -----SVAEENNGGKEKPSILSDALEAIIGAIHLEAGF--EFAKTIALRLIEKNFP 168
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-14
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 42/144 (29%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGDA L VG +LF EG+L++ R+ VN + K+A NL +I
Sbjct: 61 ERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL-- 118
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
+ AE + G ++D +
Sbjct: 119 ---------MSV---------------------------AEEN-NGGKE--KPSILSDAL 139
Query: 1160 EALVGAFIDDSGFKAATAF-LKWI 1182
EA++GA ++GF+ A L+ I
Sbjct: 140 EAIIGAIHLEAGFEFAKTIALRLI 163
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 42/251 (16%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPK 1270
++ LE L ++F + LL+ A H SF + +RLEFLGDAVLD ++ YL+ + K
Sbjct: 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKK-SYNNERLEFLGDAVLDLVVGEYLFHKFAK 85
Query: 1271 LKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVK 1330
G L+ LR+ LVN ++FA +A + F++ +S E
Sbjct: 86 DAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL-----MSVA---------------EEN 125
Query: 1331 EGPRC-PKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK---FSNLQLNPIREL 1386
G + P +L D +E+ +GAI L++GF I L ++ L + +L
Sbjct: 126 NGGKEKPSILSDALEAIIGAIHLEAGF--EFAKTIALRLIEKNFPQIDAKILIKDYKTKL 183
Query: 1387 LELCNSYDLDLQFPS---LKKGG-----KFLAEAKVTGKDKDVFISACATNLSRKEAIRI 1438
E+ P ++ G +F + GK+ A A S+KEA ++
Sbjct: 184 QEITQGKIGQT--PQYETVRAFGPDHLKQFEIALMLDGKEL-----ARAIAGSKKEAQQM 236
Query: 1439 ASQQLFSKLKA 1449
A++ KL A
Sbjct: 237 AAKIALEKLGA 247
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 44/150 (29%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGDA L VG +LF EG+L++ R+ VN + K+A NL +I
Sbjct: 61 ERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL-- 118
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTI-ADV 1158
+ AE + G K +I +D
Sbjct: 119 ---------MSV---------------------------AEEN-NGGK---EKPSILSDA 138
Query: 1159 VEALVGAFIDDSGFKAATAF-LKWIGIQVE 1187
+EA++GA ++GF+ A L+ I
Sbjct: 139 LEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 46/250 (18%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPK 1270
+ LE LG+ F + LL +A H S+++ Y+ LEFLGDA++++ I L P
Sbjct: 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE-HYETLEFLGDALVNFFIVDLLVQYSPN 61
Query: 1271 LKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVK 1330
+ G L+ L++ L++ + F +A +KF+ +K
Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIR-------------------------IK 96
Query: 1331 EGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIR----EL 1386
G ++GD+ E+ A+ +DSG + N ++ + + + + L
Sbjct: 97 RGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTIL 156
Query: 1387 LELCNSYDLDLQFPS---LKKGG-----KFLAEAKVTGKDKDVFISACATNLSRKEAIRI 1438
E+ + P + G KF+ EAK+ S+KEA +
Sbjct: 157 QEITQKRWKER--PEYRLISVEGPHHKKKFIVEAKIKEY------RTLGEGKSKKEAEQR 208
Query: 1439 ASQQLFSKLK 1448
A+++L L+
Sbjct: 209 AAEELIKLLE 218
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 34/168 (20%), Positives = 53/168 (31%), Gaps = 51/168 (30%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
E LE LGDA + + + L EG L+ ++ ++ LA + L +IR
Sbjct: 37 ETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR-- 94
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
+ R G+ +++ I DV
Sbjct: 95 ---------IKR-------------------GK-----------------INETIIGDVF 109
Query: 1160 EALVGAFIDDSGFKAATA---FLKWIGIQVEFEASQVTNICISSKSFL 1204
EAL A DSG A F K + A + + K+ L
Sbjct: 110 EALWAAVYIDSGRDANFTRELFYKLFK-EDILSAIKEGRVKKDYKTIL 156
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-30
Identities = 66/262 (25%), Positives = 92/262 (35%), Gaps = 41/262 (15%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSF---NRLGGCYQRLEFLGDAVLDYLITSYLYSV 1267
L LG LL A H S+ N +RLEFLGDAVL IT L+
Sbjct: 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHR 64
Query: 1268 YPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR 1327
+P G L LR+ +VN QA A+VA +++
Sbjct: 65 HPDRSEGDLAKLRASVVNTQALADVARRLCAEGLG---------------VHVLLGRG-- 107
Query: 1328 EVKEGPRC-PKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK---FSNLQLNPI 1383
E G +L D +ES LGAI L G +++L P+L L+
Sbjct: 108 EANTGGADKSSILADGMESLLGAIYLQHGM--EKAREVILRLFGPLLDAAPTLGAGLDWK 165
Query: 1384 RELLELCNS-------YDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAI 1436
L EL + Y + P K +F A V S+KEA
Sbjct: 166 TSLQELTAARGLGAPSYLVTSTGPDHDK--EFTAVVVVMDS-----EYGSGVGRSKKEAE 218
Query: 1437 RIASQQLFSKLKAAGYVPKTKS 1458
+ A+ + L+ K+
Sbjct: 219 QKAAAAAWKALEVLDNAMPGKT 240
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 47/153 (30%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLA---ARNNLQVYI 1096
ERLE LGDA L + LF H EG+L + R++ VN L +A L V++
Sbjct: 43 ERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHV 102
Query: 1097 RDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTI- 1155
LGR E + G K +I
Sbjct: 103 L-----------LGR---------------------------GEAN-TGGA---DKSSIL 120
Query: 1156 ADVVEALVGAFIDDSGFKAATAF-LKWIGIQVE 1187
AD +E+L+GA G + A L+ G ++
Sbjct: 121 ADGMESLLGAIYLQHGMEKAREVILRLFGPLLD 153
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 49/259 (18%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSF--------NRLGGCYQRLEFLGDAVLDYLITS 1262
+ + G F + LL +A H S+ + ++LEFLGDAVL+ +
Sbjct: 20 IVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCE 79
Query: 1263 YLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT 1322
LY YP+ + G L ++S + + A V+ + KFL L +
Sbjct: 80 ILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLF-----LGKG---------- 124
Query: 1323 PSSTREVKEGPRC-PKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK---FSNL 1378
E K G R +L D E+ L AI LD G+ + ++ + ++ +
Sbjct: 125 -----EEKTGGRDRDSILADAFEALLAAIYLDQGY--EKIKELFEQEFEFYIEKIMKGEM 177
Query: 1379 QLNPIRELLELCNSYDLDLQFPS---LKKGG-----KFLAEAKVTGKDKDVFISACATNL 1430
+ L E+ S P ++ F+ E +V GK A
Sbjct: 178 LFDYKTALQEIVQSEHKVP--PEYILVRTEKNDGDRIFVVEVRVNGK-----TIATGKGR 230
Query: 1431 SRKEAIRIASQQLFSKLKA 1449
++KEA + A++ + KL
Sbjct: 231 TKKEAEKEAARIAYEKLLK 249
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 53/177 (29%)
Query: 1022 EMLLKALT---------TEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTR 1072
E+L +AL ++ S E+LE LGDA L+ V L+ + + G+L R
Sbjct: 36 ELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 95
Query: 1073 RRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGR 1132
+S A + L ++ + NL ++ LG+
Sbjct: 96 VKSAAASEEVLAMVSRKMNLGKFLF-----------LGK--------------------- 123
Query: 1133 APDDLNAEVRCSKGHHWLHKKTI-ADVVEALVGAFIDDSGFKAATAF-LKWIGIQVE 1187
E + + G + +I AD EAL+ A D G++ + +E
Sbjct: 124 ------GEEK-TGGR---DRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIE 170
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 9e-30
Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 46/256 (17%)
Query: 1215 LEILLGHQFLH-RGLLLQAFVHPSF----------NRLGGCYQRLEFLGDAVLDYLITSY 1263
+++ + + ++ L AF+H SF + +RLEFLGD+ L L++
Sbjct: 88 VDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYI 147
Query: 1264 LYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITP 1323
+Y+ +P G L+ ++ +VNN + + +F K L
Sbjct: 148 VYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQG------------------- 188
Query: 1324 SSTREVKEG-PRCPKVLGDLVESSLGAILLDSGF-NLNTVWKIMLSFLDPILKFSNLQLN 1381
+ + + K D VE+ +GA+++D + + + + L S+ +
Sbjct: 189 NIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMVI 248
Query: 1382 PIR-------ELLELC--NSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSR 1432
EL EL N L + L + F E K+ A S
Sbjct: 249 KEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILL-----DEAEGNSI 303
Query: 1433 KEAIRIASQQLFSKLK 1448
+EA A+ ++ +
Sbjct: 304 REAEHRAAMKVLENDE 319
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 43/144 (29%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGD++L V ++ + +EG L++ + + VNN+NL + + N ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ-- 187
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
T + K AD V
Sbjct: 188 ---------GN--------IATPTR-----VVKDKMS----------------KRYADCV 209
Query: 1160 EALVGA-FID--DSGFKAATAFLK 1180
EA +GA ID + F +L+
Sbjct: 210 EAYIGALVIDRFGTEFLDIKEWLE 233
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 8e-29
Identities = 73/389 (18%), Positives = 121/389 (31%), Gaps = 87/389 (22%)
Query: 849 TPGGSVDRKSLPSHGPL-----QLHNGWSSESDVENSL----VYATHKKW-FYLVTNIVF 898
+P +D ++L L +L + ++ S + SL V W Y+V I
Sbjct: 119 SPTSPLDLRALMVTAQLMCDAKRLSDEYTDYSTLSASLHGRMVATPEISWSLYVVLGIDS 178
Query: 899 EKNGYSPY-KDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESH 957
+ S + + ++S +++ + +++ IHL+ PL+ A L L++ +
Sbjct: 179 TQTSLSYFTRANESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDH---QIPAPGSWD 235
Query: 958 ELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGA 1017
+L LPPELC L F +L LP I + ++ I L SFP+
Sbjct: 236 DLAPKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTI---CALDKSFPDCG 292
Query: 1018 EVSAEMLL--------------------KALTTEKCQERFSLERLEILGDAFLKYAVGRH 1057
+ E +RLE+LGDA L + V
Sbjct: 293 RIGGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTAR 352
Query: 1058 LFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRIC 1117
L L G L + V N L L L
Sbjct: 353 LLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFS------------------ 394
Query: 1118 SKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGA-FIDDSGFKAAT 1176
+ KT AD+ E +VG+ F +G
Sbjct: 395 --------------------------NNLVA--KSKTWADMYEEIVGSIFTGPNGIYGCE 426
Query: 1177 AF-LKWIGIQVEFEASQVTNICISSKSFL 1204
F K + + V + C + +
Sbjct: 427 EFLAKTLMSPEHSK--TVGSACPDAVTKA 453
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-25
Identities = 34/157 (21%), Positives = 49/157 (31%), Gaps = 30/157 (19%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1274
+ I G LL A YQ+LE LGDA L + +L++++P L G
Sbjct: 624 VPIPSGTIPFLIRLLQIALTPHV-------YQKLELLGDAFLKCSLALHLHALHPTLTEG 676
Query: 1275 QLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPR 1334
LT +R N + + +
Sbjct: 677 ALTRMRQSAETNSVLGRLTKRFPSVVSEVIIE---------------------SHPKIQP 715
Query: 1335 CPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP 1371
KV GD E+ L AILL G + + P
Sbjct: 716 DSKVYGDTFEAILAAILLACGE--EAAGAFVREHVLP 750
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-24
Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 41/229 (17%)
Query: 1198 ISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLD 1257
I + + ++A L + G H +QRLE LGDAVL
Sbjct: 294 IGGERYFAITAGLRLD-QGRGRGLAGWRTPFGPFGVSHTD------VFQRLELLGDAVLG 346
Query: 1258 YLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 1317
+++T+ L ++P G L +L+ LV N+A + + F +N
Sbjct: 347 FIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNN---------- 396
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSN 1377
K D+ E +G+I + + + L
Sbjct: 397 --------------LVAKSKTWADMYEEIVGSIFTGPNG-IYGCEEFLAKTLMSPEHSKT 441
Query: 1378 L---QLNPIRELLELCNSYDLDL-QFPSLKKGGK-----FLAEAKVTGK 1417
+ + + + + + +F SL ++V+
Sbjct: 442 VGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTM 490
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-15
Identities = 49/191 (25%), Positives = 68/191 (35%), Gaps = 51/191 (26%)
Query: 1002 AIELKHLLSASFPEGAEVSAEMLLK-ALTTEKCQERFSLERLEILGDAFLKYAVGRHLFL 1060
A + L+ P G LL+ ALT ++LE+LGDAFLK ++ HL
Sbjct: 615 AQTVSRSLAVPIPSGTIPFLIRLLQIALT------PHVYQKLELLGDAFLKCSLALHLHA 668
Query: 1061 LHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKE 1120
LH T+ EG LTR R +A NS L +L +
Sbjct: 669 LHPTLTEGALTRMRQSAETNSVLGRLT--KRFPSVVS-----------EVI--------- 706
Query: 1121 TERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAF-L 1179
E K K D EA++ A + G +AA AF
Sbjct: 707 ------------------IESH-PKIQP--DSKVYGDTFEAILAAILLACGEEAAGAFVR 745
Query: 1180 KWIGIQVEFEA 1190
+ + QV +A
Sbjct: 746 EHVLPQVVADA 756
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-26
Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 32/173 (18%)
Query: 1215 LEILLGHQFLH-RGLLLQAFVHPSF----------NRLGGCYQRLEFLGDAVLDYLITSY 1263
+++ + + ++ L AF+H SF + +RLEFLGD+ L L++
Sbjct: 88 VDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYI 147
Query: 1264 LYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITP 1323
+Y+ +P G L+ ++ +VNN + + +F K L
Sbjct: 148 VYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQG------------------- 188
Query: 1324 SSTREVKEG-PRCPKVLGDLVESSLGAILLDSGF-NLNTVWKIMLSFLDPILK 1374
+ + + K D V++ +GA+++D + + + + L
Sbjct: 189 NIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLA 241
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 43/144 (29%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
ERLE LGD++L V ++ + +EG L++ + + VNN+NL + + N ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ-- 187
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
++ K AD V
Sbjct: 188 ---------GNI--------------------------ATP---TRVVKDKMSKRYADCV 209
Query: 1160 EALVGA-FIDD--SGFKAATAFLK 1180
+A +GA ID + F +L+
Sbjct: 210 QAYIGALVIDRFGTEFLDIKEWLE 233
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 6e-21
Identities = 98/511 (19%), Positives = 160/511 (31%), Gaps = 153/511 (29%)
Query: 60 RKYQLELCKKAMEEN--IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117
R YQ + ++ + + IV L TG GKTH+A+ I EL + + + PT+AL
Sbjct: 95 RDYQEKALERWLVDKRGCIV-LPTGSGKTHVAMAAINEL--------STPTLIVVPTLAL 145
Query: 118 VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKM 177
+Q + + V F G K LK + V +
Sbjct: 146 AEQWKERLGIFGEEYVGEFSGRIKELKP------------LTVSTYDSAYV---NAEKLG 190
Query: 178 ELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLP 237
LLIFDE HH +S Y +I + P G+TA+ G
Sbjct: 191 NRFMLLIFDEVHHLPAES---YVQIAQMS------IAPFRLGLTATFEREDGR------- 234
Query: 238 KSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKR 297
L+ ++ KV+ + + L + Y + +V LAE +R
Sbjct: 235 --HEILKEVVGGKVFEL-FPDSLAGKHLAK----YTIKRI-------FVP----LAEDER 276
Query: 298 EQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNE 357
+Y K + + L N+
Sbjct: 277 VEYEKR--------------EKVYKQFLRARGITLRRAE-----------------DFNK 305
Query: 358 LIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILS 417
++ A G +A E A IA + K+ +L IL
Sbjct: 306 IVMASGYD---------ERAYEALRAWEEARRIAFNS-----------KNKIRKLREILE 345
Query: 418 TFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSIL 477
R K I+F +S + + SR + IL
Sbjct: 346 RHR---KDKIIIFTRHNELVYRISKVF---------LIPAITH------RTSREEREEIL 387
Query: 478 EKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS-------FIQSRGRA--RMP 528
E FR+G +V+++V +EG+D+ + + + S +IQ GR
Sbjct: 388 EGFRTGRFRAIVSSQVLDEGIDVPDANVGV-------IMSGSGSAREYIQRLGRILRPSK 440
Query: 529 QSEYAFLVDSGNQRELDLIKNFSKEEDRMNR 559
+ A L +LI + E + R
Sbjct: 441 GKKEAVLY--------ELISRGTGEVNTARR 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 9e-16
Identities = 116/769 (15%), Positives = 216/769 (28%), Gaps = 256/769 (33%)
Query: 189 HHAQVKSN---HPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKGASAQANLPKSINS 242
HH ++ + Y I+ F + + + M S + + +++
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 243 LENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYIS 302
L + E ++ FV + Y++ S T Q + YI
Sbjct: 64 TLRLFW--TLLSKQEEMVQKFVEEVLRINYKF------LMSPIKTEQRQ-PSMMTRMYIE 114
Query: 303 ALSRKLHDHQSL--RNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGD--------- 351
R +D+Q N ++ + + ++ L L A +L+ G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVA 167
Query: 352 -ETMRNELIE------------AEGNTIDD------SLCRFASQASEVFAAICRRDGIAS 392
+ + ++ N+ + L Q + + R D ++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTS--RSDHSSN 222
Query: 393 DLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLAS 452
I ++ +L RL + + + C++ +L N++ +
Sbjct: 223 IKLRIHSIQA-----ELRRL------LKSKPYENCLL-------------VLLNVQNAKA 258
Query: 453 W-----RCHFLVGVNAGLKSMSRN-----AMKSILEKFRSGELNLLVATKVGEEGLDIQT 502
W C L+ +R + + S + + + T +E +
Sbjct: 259 WNAFNLSCKILL--------TTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLL 308
Query: 503 CCLVIRF-DLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI 561
L R DLP V + N R L +I + D +
Sbjct: 309 KYLDCRPQDLPR---------------------EVLTTNPRRLSIIAESIR--DGLAT-- 343
Query: 562 MDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDL 621
D + + D I + SL + L E+ + FD L
Sbjct: 344 -----WDNW-----KHVNCDKLTTIIES----SL-----NVLEPAEY---RK---MFDRL 378
Query: 622 GGTICHIILPANAPIHQIVGTPQSSME----AAKKDACLKAIEDLHKLGALNDYLLPQED 677
+ P +A I P + K + + LHK + Q
Sbjct: 379 S------VFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPK 422
Query: 678 NATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPA 737
+T P ++ E E LH +V Y + F IP
Sbjct: 423 ESTISIPSIYLELKVKLENE---YALHRSIV----------DHYNIPKTFDSDDLIPPYL 469
Query: 738 DR-IYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQFQEMFLKVILD 796
D+ Y G H HL I ++ +F V LD
Sbjct: 470 DQYFYSHIG------------H-----HL------------KNIEHPERM-TLFRMVFLD 499
Query: 797 RSEFNSEFVP--LGKDDY-CESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGS 853
F F+ + D +S S L + F+K + C + P +
Sbjct: 500 ---FR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-------CDNDPKY------ 541
Query: 854 VDR------KSLPSHGPLQLHNGWSSESDV-------ENSLVYA-THKK 888
+R LP L S +D+ E+ ++ HK+
Sbjct: 542 -ERLVNAILDFLPKIEE-NLIC--SKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 6e-15
Identities = 98/671 (14%), Positives = 187/671 (27%), Gaps = 210/671 (31%)
Query: 647 MEAAKKDACLKAIEDLHKLGALN----DYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGE 702
+A + K ++D+ K L+ D+++ +A LF + + E
Sbjct: 26 EDAFVDNFDCKDVQDMPK-SILSKEEIDHII-MSKDAVSGTLRLF----WTLLSKQE--E 77
Query: 703 LHEMLVPAVLRQ--SWTKSQYPVRLNFYFMQFIPDPA----------DRIYREFGLFVKS 750
+ + V VLR + S P+ DR+Y + +F K
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQR--------QPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 751 LLPGEAEHLKVDLHLAR---------------GRSVMTKLVPSGIMQAQQFQEMF----- 790
+ +LK+ L G++ + V + + Q
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIF 185
Query: 791 -LKVILDRSEFNSEFVPLGK------DDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLS 843
L + S + L K ++ S + + +S+ ++ RR L
Sbjct: 186 WLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSS----NIKLRIHSIQAEL-RRLLK 239
Query: 844 SPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWF-----YLVTNIVF 898
S + L L L N +++ F L+T
Sbjct: 240 SKPY--------ENCL-----LVLLNVQNAK-----------AWNAFNLSCKILLT---- 271
Query: 899 EKNGYSPYKDSDSSSHVDHLISSYGIH--LKHPKQPLLRAKPLFRLRNLLHNRKLEDSES 956
+ D L ++ H L H L + L L R
Sbjct: 272 ----------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR------- 314
Query: 957 HELEEYFDDLPPELCQ-----LKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSA 1011
DLP E+ L II + + +N KH+
Sbjct: 315 ------PQDLPREVLTTNPRRLSIIA---------ESIRDGLATWDN------WKHVNCD 353
Query: 1012 SFPEGAEVSAEMLLKALTTEKCQERFSLERLEIL-GDAFLKYAVGRHLFLLHDTVDEGEL 1070
E S L L + ++ F +RL + A + + L L+ V + ++
Sbjct: 354 KLTTIIESS----LNVLEPAEYRKMF--DRLSVFPPSAHIPTIL---LSLIWFDVIKSDV 404
Query: 1071 TRRRSNAVNNSNLLKLAARNN--LQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQ 1128
VN + L + + I + + R+I
Sbjct: 405 ----MVVVNKLHKYSLVEKQPKESTISIPSIYLE--------LKVKLENEYALHRSIVDH 452
Query: 1129 YDGRAPDDLNAEVRCSK--------GHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLK 1180
Y+ D + + GHH L + + F+D +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLD----------FR 501
Query: 1181 WIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNR 1240
++ ++ +++ +S S L + L+ + + P + R
Sbjct: 502 FLEQKIRHDSTA----WNASGSILNT-----LQQLKFYKPYICDN---------DPKYER 543
Query: 1241 LGGCYQRLEFL 1251
L L+FL
Sbjct: 544 LVNAI--LDFL 552
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 7e-11
Identities = 87/643 (13%), Positives = 176/643 (27%), Gaps = 209/643 (32%)
Query: 872 SSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQ 931
E V+ + + +L++ I E+ S D L Y + K
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRL---YNDNQVFAKY 129
Query: 932 PLLRAKPLFRLRNLLHNRKLEDSE---------------------SHELEEYFDDLPPEL 970
+ R +P +LR L +L ++ S++++ D
Sbjct: 130 NVSRLQPYLKLRQAL--LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----- 182
Query: 971 CQLKIIGFSKDIGSSLSLLP-SIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALT 1029
KI F ++ + S P +++ L+ LL I+ + ++ + L
Sbjct: 183 ---KI--FWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1030 TEKCQERFSLERLEILGD--------AFLKYAVG-RHLFLLHDTVDEGELTRRRSNAVNN 1080
+ + L +L + AF + + L TR +
Sbjct: 236 RLLKSKPYE-NCLLVLLNVQNAKAWNAF---NLSCKILLT----------TRFKQVT--- 278
Query: 1081 SNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAE 1140
+ L A ++ + P E + ++ +Y P DL E
Sbjct: 279 -DFLSAATTTHISLDHHSMTLTP---------------DEVK-SLLLKYLDCRPQDLPRE 321
Query: 1141 VRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEA-SQVTNICIS 1199
V T +++ I D A K V + + + ++
Sbjct: 322 V-----------LTTNPRRLSIIAESIRD--GLATWDNWK----HVNCDKLTTIIESSLN 364
Query: 1200 S-------KSF-----LPLSASLDMATLEIL-----------LGHQFLHRGLLLQAFVHP 1236
K F P SA + L ++ + ++ L+ +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----- 419
Query: 1237 SFNRLGGCYQRLEFLGDAVLDYLITSYLYSVY--PKLKPGQLTDLRSMLVNNQAFANVAV 1294
Q E T + S+Y K+K L +V++
Sbjct: 420 ---------QPKES----------TISIPSIYLELKVKLENEYALHRSIVDH-------- 452
Query: 1295 DQSFYKFL-IFDSNVLSET-----INNYVDY-MITPSSTREVKEGPRCPKVLGDLVESSL 1347
Y FDS+ L +++ + + +
Sbjct: 453 ----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM------------- 495
Query: 1348 GAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGK 1407
+ LD FL+ ++ + N +L LQ LK
Sbjct: 496 --VFLD------------FRFLEQKIRHDSTAWNASGSILNT-------LQ--QLKFYKP 532
Query: 1408 FLA--EAKVTGKDKDV--FISACATNLSRKEAIRIASQQLFSK 1446
++ + K + F+ NL + + L ++
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-10
Identities = 99/647 (15%), Positives = 184/647 (28%), Gaps = 178/647 (27%)
Query: 389 GIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQ-NL 447
I S ++ LRL L +Q +V + + +L+ N
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTL---LSKQ--------EEMV-QKFVEEVLRINY 91
Query: 448 KFLAS-WRCHF----------------LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVA 490
KFL S + L N + + ++ L K R L L A
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPA 150
Query: 491 TKVGEEGLDIQTC---CLVIRFDLPETVASF-IQSRGRARMPQSEYAFLVDSGNQRE--- 543
V +G+ + + + S+ +Q +M F ++ N
Sbjct: 151 KNVLIDGV--LGSGKTWVAL-----DVCLSYKVQC----KMDFK--IFWLNLKNCNSPET 197
Query: 544 -LDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSK 602
L++++ + D D +S+ + S Y LL
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLL-----V 249
Query: 603 LPHDEFFNPKPKFYYFDDLGGTICHII-----------LPANAPIHQIVGTPQSSMEAAK 651
L N K + F +L C I+ L A H + ++ +
Sbjct: 250 L--LNVQNAK-AWNAF-NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 652 -KDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPA 710
K LK ++ LP+E P S ++
Sbjct: 303 VKSLLLKYLD-------CRPQDLPRE--VLTTNPRRLS------------------IIAE 335
Query: 711 VLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRS 770
+R + + D++ + L P E + L S
Sbjct: 336 SIR------DGLATWDNWKHVNC----DKLTTIIESSLNVLEPAEYRKMFDRL------S 379
Query: 771 VMTK--LVPSGIMQ------AQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSS--TF 820
V +P+ ++ + + + + S L + ES+ S +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--------LVEKQPKESTISIPSI 431
Query: 821 YLLLPV------IFHKNSVDWKIIRRCLSSPVFGTPGGSVDR---KSLPSHGPLQLHNGW 871
YL L V H++ VD I + S P +D+ + H L N
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--YLDQYFYSHIGHH----LKNIE 485
Query: 872 SSESDVENSLVY-----------ATHKKWFYL--VTNIVFEKNGYSPYKDSDSSSHVDHL 918
E +V+ W + N + + Y PY D+ + L
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERL 544
Query: 919 ISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDD 965
+++ L ++ L+ +K + L + E E F++
Sbjct: 545 VNAILDFLPKIEENLICSK---------YTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 7e-09
Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 88/305 (28%)
Query: 54 DPKQIARKYQLELCKKAMEE-----NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSIC 108
++R ++A+ E N+++ G GKT +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT---WV----------------- 166
Query: 109 IFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEK--EIDQYEVLVMIPQIL 166
V KV + + FK+ F W + E ++ + Q L
Sbjct: 167 ------ALDVCLSYKV-QCKMDFKI--F------------WLNLKNCNSPETVLEMLQKL 205
Query: 167 LYCLYHRFIKMELIALLIFDECHHAQVK-----SNHPYAK---IMKDFYKPDIMKVPRIF 218
LY + + + I H Q + + PY ++ + F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---F 262
Query: 219 GMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
++ ++ + + + LD ++ E
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--------------- 307
Query: 279 NDTSSSYVTCSEQLAEIKRE------QYISALSRKLHDHQSLRNTTKQLN--RLHDSMKF 330
Y+ C Q ++ RE + +S ++ + D + + K +N +L ++
Sbjct: 308 ----LKYLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 331 CLENL 335
L L
Sbjct: 362 SLNVL 366
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-05
Identities = 75/436 (17%), Positives = 124/436 (28%), Gaps = 140/436 (32%)
Query: 1147 HHWL------HKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISS 1200
HH + H+ D++ AF+D+ K K I ++ +I +S
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-----LSKEEIDHIIMSK 58
Query: 1201 KSFLPLSASLDMATLEILLGHQ------FLHRGL------LLQAF----VHPSFNRLGGC 1244
+S +L + LL Q F+ L L+ PS
Sbjct: 59 D---AVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 1245 YQRLEFLGDAVLDYLITSYLYSVYPKL---KPGQLTDLRSMLVNNQAFANVAVD------ 1295
QR D V+ K + LR L+ + NV +D
Sbjct: 114 EQRDRLYNDN-----------QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 1296 --------------QSFYKFLIF--------DSNVLSETINNYVDYMITPSSTREVKEGP 1333
Q F IF + E + + Y I P+ T
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSS 221
Query: 1334 RCPKVLGDLVESSLGAILLDSGFN-----LNTVW------------KIML--------SF 1368
+ + ++ L +L + L V KI+L F
Sbjct: 222 NIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 1369 LDPI------LKFSNLQLNPIRELLELCNSYDLDLQFPSL----KKG--------GKFLA 1410
L L ++ L P E+ L Y LD + L + +
Sbjct: 281 LSAATTTHISLDHHSMTLTP-DEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 1411 EAKVT-------GKDK-DVFISACATNLSRKEAIRIASQQLFSKL----KAAGYVPKTKS 1458
+ T DK I + L E +++F +L +A ++P T
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMFDRLSVFPPSA-HIP-TIL 391
Query: 1459 LESILKSSPKSEARLI 1474
L I KS+ ++
Sbjct: 392 LSLIWFDVIKSDVMVV 407
|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-15
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 16/124 (12%)
Query: 874 ESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDSDSSSHVDHLISSYGIHLKHPKQ 931
++ +V + Y V +I +++N S D S +++ Y + KQ
Sbjct: 26 SKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQ 85
Query: 932 PLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPS 991
P+L ++P R+ + L PELC L G + + + +++
Sbjct: 86 PVLVSQP---------KRRRGPGGTLPGPAM---LIPELCYLT--GLTDKMRNDFNVMKD 131
Query: 992 IMHR 995
+
Sbjct: 132 LAVH 135
|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 3e-15
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 874 ESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDSDSSSHVDHLISSYGIHLKHPKQ 931
++ +V + Y V +I +++N S D S +++ Y + KQ
Sbjct: 25 SKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQ 84
Query: 932 PLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDI 982
P+L ++P R+ + L PELC L G + +
Sbjct: 85 PMLVSQP---------KRRRGPGGTLPGPAM---LIPELCYL--TGLTDKM 121
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-14
Identities = 82/481 (17%), Positives = 149/481 (30%), Gaps = 53/481 (11%)
Query: 60 RKYQLELCKKAMEENIIVYL---GTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVA 116
+QL + + L G GKT A +++++ L+ + + I + P
Sbjct: 155 IPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQ--LLSGAAERVLI-IVPE-T 210
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVM-IPQILLYCLYHRFI 175
L Q + + F + ++ D D ++++ + +
Sbjct: 211 LQHQWLVEMLRRFNLRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHL 269
Query: 176 KMELIALLIFDECHH--AQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQ 233
LL+ DE HH + + ++ + VP + +TA+P
Sbjct: 270 CEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE----HVPGVLLLTATPEQLG----- 320
Query: 234 ANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLA 293
+S + LLD + E PV N S+ L
Sbjct: 321 ---MESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSN---DELNMLG 374
Query: 294 EIKREQYISALSRKLHD-----HQSLRNTTKQLNRLHDSMKFCLENL--GVCGALHASYI 346
E+ EQ I L + + + + L H + + N GV G
Sbjct: 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKREL- 433
Query: 347 LLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFS 406
T++ L I S A +++E A + F
Sbjct: 434 -----HTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFD 488
Query: 407 KKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
++ L+G L++ R K +V + TA + Q L+ R
Sbjct: 489 PRVEWLMGYLTSHR---SQKVLVICAKAATAL---QLEQVLREREGIRAAVFHE------ 536
Query: 467 SMSRNAMKSILEKFRSGE--LNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
MS F + +L+ +++G EG + Q ++ FDLP Q GR
Sbjct: 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
Query: 525 A 525
Sbjct: 597 L 597
|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 874 ESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDSDSSSHVDHLISSYGIHLKHPKQ 931
+ ++V + Y + ++ + K D + +++ +YGI +K Q
Sbjct: 25 TKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQ 84
Query: 932 PLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPS 991
PLL +P R+ + E L PEL + G + + +
Sbjct: 85 PLLIHRP--------SERQDNHGMLLKGEIL---LLPELSFM--TGIPEKMKKDFRAMKD 131
Query: 992 IM 993
+
Sbjct: 132 LA 133
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 35/168 (20%)
Query: 60 RKYQLELCKKAMEEN--IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117
R YQ + ++ + + IV L TG GKTH+A+ I EL + + + PT+AL
Sbjct: 95 RDYQEKALERWLVDKRGCIV-LPTGSGKTHVAMAAINEL--------STPTLIVVPTLAL 145
Query: 118 VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKM 177
+Q + + V F G K LK + Y+ + + L +RF
Sbjct: 146 AEQWKERLGIFGEEYVGEFSGRIKELKPLT-----VSTYDSAYVNAEKL----GNRF--- 193
Query: 178 ELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPV 225
LLIFDE HH +S Y +I + + P G+TA+
Sbjct: 194 ---MLLIFDEVHHLPAES---YVQIAQ------MSIAPFRLGLTATFE 229
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 63 QLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
Q E KK + +++ TG GKT IA + I ++ L++ K I++ P AL +
Sbjct: 35 QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGI--ISFLLKNGGK--AIYVTPLRALTNE 90
Query: 121 QAKVIE----ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
K + E IGFKV G + Y++++ + L HR
Sbjct: 91 --KYLTFKDWELIGFKVAMTSGDYDTDD------AWLKNYDIIITTYEKLDSLWRHRPEW 142
Query: 177 MELIALLIFDECH 189
+ + + DE H
Sbjct: 143 LNEVNYFVLDELH 155
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
++K +L +L Q ++FV + AL+ +L F A ++ G+
Sbjct: 16 NEKNRKLFDLLDVLEFNQ---VVIFVKSVQRCIALAQLLVEQNFPAI-------AIHRGM 65
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
R S ++F+ + +LVAT + G+DI+ + +D+PE +++ RA
Sbjct: 66 PQEERL---SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 122
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 8e-11
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+ V +E K L + + + Q ++F N L+ L+N KF S
Sbjct: 9 VNVEEE---EYKYECLTDLYDSISVTQ---AVIFCNTRRKVEELTTKLRNDKFTVS---- 58
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
+ + L R+ +I+++FRSG +L++T + G+D+Q LVI +DLP
Sbjct: 59 ---AIYSDLPQQERD---TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKE 112
Query: 517 SFIQSRGRA-RMPQSEYAF-LVDSGNQRELDLIKNFSKEE-DRMNREIMD 563
++I GR R + A V + + + ++ F + + + +I
Sbjct: 113 NYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 63 QLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ 120
Q E K + +N ++ + T GKT IA + + + ++ + K +++ P AL ++
Sbjct: 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAM--VHRILTQGGK--AVYIVPLKALAEE 83
Query: 121 QAKVIE----ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
K E E IG +V G + + +Y++++ + L H
Sbjct: 84 --KFQEFQDWEKIGLRVAMATGDYDSKD------EWLGKYDIIIATAEKFDSLLRHGSSW 135
Query: 177 MELIALLIFDECH 189
++ + +L+ DE H
Sbjct: 136 IKDVKILVADEIH 148
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 25/176 (14%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+ K L I + + Q I+F A+ L+ + S
Sbjct: 13 VLCEHR---KDKYQALCNIYGSITIGQ---AIIFCQTRRNAKWLTVEMIQDGHQVS---- 62
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
++ L R SI+++FR G+ +L+ T V G+D++ +V+ FDLP
Sbjct: 63 ---LLSGELTVEQRA---SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG 116
Query: 517 SFIQS-----R-GRA-RMPQSEYAF-LVDSGNQRELDLIKNFSKEE-DRMNREIMD 563
R GR R + AF +++ L I++ ++N E MD
Sbjct: 117 EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMD 172
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 9e-10
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 18/132 (13%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQ 121
Q E +K +N+++ + T GKT +A E+A + + +++ P AL +
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLA-----EMAMVREAIKGGKSLYVVPLRALAGE- 83
Query: 122 AKVIE----ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKM 177
K E IG ++ G + + + +++V + + +R +
Sbjct: 84 -KYESFKKWEKIGLRIGISTGDYESRD------EHLGDCDIIVTTSEKADSLIRNRASWI 136
Query: 178 ELIALLIFDECH 189
+ ++ L+ DE H
Sbjct: 137 KAVSCLVVDEIH 148
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
I V +E KL L + T + Q ++F+N L+ + F S
Sbjct: 259 INVERE---EWKLDTLCDLYETLTITQ---AVIFINTRRKVDWLTEKMHARDFTVS---- 308
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
++ + R+ I+ +FRSG +L+ T + G+D+Q LVI +DLP
Sbjct: 309 ---AMHGDMDQKERD---VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE 362
Query: 517 SFIQSRGR 524
++I GR
Sbjct: 363 NYIHRIGR 370
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L L +S + ++F N L+ L+N KF S + + L
Sbjct: 250 LTDLYDSISVT------QAVIFCNTRRKVEELTTKLRNDKFTVS-------AIYSDLPQQ 296
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
R+ +I+++FRSG +L++T + G+D+Q LVI +DLP ++I GR
Sbjct: 297 ERD---TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 349
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L+ +L F ++FV + AL+ +L F A ++ G+
Sbjct: 240 KLFDLLDVL-EFNQ-----VVIFVKSVQRCIALAQLLVEQNFPAI-------AIHRGMPQ 286
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
R S ++F+ + +LVAT + G+DI+ + +D+PE +++ RA
Sbjct: 287 EERL---SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 341
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+ V +E K L + T + Q ++F N L+ ++ F S
Sbjct: 255 VAVERE---EWKFDTLCDLYDTLTITQ---AVIFCNTKRKVDWLTEKMREANFTVS---- 304
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
++ + R SI+++FRSG +L++T V GLD+ L+I +DLP
Sbjct: 305 ---SMHGDMPQKERE---SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE 358
Query: 517 SFIQSRGR 524
+I GR
Sbjct: 359 LYIHRIGR 366
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-09
Identities = 44/238 (18%), Positives = 75/238 (31%), Gaps = 45/238 (18%)
Query: 49 QKTDKDPKQIARKYQLELCKKAMEE------NIIVYLGTGCGKTHIAVLLIYELAH---- 98
R YQ +A++ ++ + TG GKT +A + ++L
Sbjct: 169 SPYHHVSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWN 228
Query: 99 -LIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYE 157
+ I FLA LV G GG E
Sbjct: 229 RTGDYRKPRIL-FLADRNVLVDDPKDKTFTPFGDARHKIEGGKVV-----------KSRE 276
Query: 158 VLVMIPQILLYCLYHRFIKMELIA----LLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK 213
+ I Q + + E L+I DECH + N + +I+ ++++P
Sbjct: 277 IYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREIL-EYFEPAFQ- 334
Query: 214 VPRIFGMTASPVVGKGAS---------AQANLPKSINSLENLL-DAKVYSVEDAEDLE 261
GMTA+P+ +L + I+ + L +V+ V D
Sbjct: 335 ----IGMTATPLREDNRDTYRYFGNPIYTYSLRQGID--DGFLAPYRVHRVISEVDAA 386
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 6e-09
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L ++ + CI+F L+ L +L + ++ G+
Sbjct: 26 LKDVLMTENPDS------CIIFCRTKEHVNQLTDELDDLGYPCD-------KIHGGMIQE 72
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARM 527
R ++ +F+ GE LVAT V G+DI+ LVI +DLP S++ GR R
Sbjct: 73 DRF---DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129
Query: 528 PQSEYAF-LVDSGNQRELDLIKNFSKEE-DRM 557
A V + +R L I+ + E ++
Sbjct: 130 GNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 9e-09
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+E +KE K++ L+ L + ++F + A+ L A
Sbjct: 34 VEYVKE---EAKMVYLLECLQ----KTPPPVLIFAEKKADVDAIHEYLLLKGVEA----- 81
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
V ++ G R +E FR G+ ++LVAT V +GLD VI +D+PE +
Sbjct: 82 --VAIHGGKDQEERTK---AIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIE 136
Query: 517 SFIQSR----GRARMPQSEYAFLVDSGNQREL-DLIK 548
+++ R G + F+ + ++ L DL
Sbjct: 137 NYVH-RIGRTGCSGNTGIATTFINKACDESVLMDLKA 172
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-08
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L L G ++ + Q ++F + TA L+ L + ++ +
Sbjct: 257 LCNLYGAIT---IAQ---AMIFCHTRKTASWLAAELSKEGHQVA-------LLSGEMMVE 303
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP 512
R A ++E+FR G+ +LV T V G+D++ +VI FDLP
Sbjct: 304 QRAA---VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+ ++E S K L+ +L+ + +VFV A +L L + +
Sbjct: 24 VVWVEE---SDKRSFLLDLLNA--TGKDSLTLVFVETKKGADSLEDFLYHEGYAC----- 73
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
++ R L +FRSG+ +LVAT V GLDI VI FDLP +
Sbjct: 74 --TSIHGDRSQRDREE---ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 128
Query: 517 SFIQSR----GRARMPQSEYAFLVDSGNQRELDLIK 548
++ R GR +F + DL+
Sbjct: 129 EYVH-RIGRTGRVGNLGLATSFFNERNINITKDLLD 163
|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
+S S+++E+ F +EEG +H+K F IV + E G
Sbjct: 5 DKKSPISQVHEIGIKRNM-TVHFKVLREEGPAHMKNFITACIVG----SIVTEGEG---N 56
Query: 1578 KKKGAAEHAAEGMLWCLER 1596
KK + + AAE ML L++
Sbjct: 57 GKKVSKKRAAEKMLVELQK 75
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L L G+++ I+FV TA L L++ S ++ L++
Sbjct: 234 LTELYGLMTIG------SSIIFVATKKTANVLYGKLKSEGHEVS-------ILHGDLQTQ 280
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP 512
R+ +++ FR G +L+ T V G+DI T +V+ +DLP
Sbjct: 281 ERDR---LIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP 321
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L L G ++ + Q ++F + TA L+ L + ++ +
Sbjct: 324 LCNLYGAIT---IAQ---AMIFCHTRKTASWLAAELSKEGHQVA-------LLSGEMMVE 370
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP 512
R A ++E+FR G+ +LV T V G+D++ +VI FDLP
Sbjct: 371 QRAA---VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + S ++ Q I+F N L+ + +L + +A +K
Sbjct: 245 KLHCLNTLFSKLQINQ---AIIFCNSTNRVELLAKKITDLGYSCY-------YSHARMKQ 294
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
RN + +FR G++ LV + + G+DIQ +VI FD P+T +++ GR+ R
Sbjct: 295 QERN---KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351
Query: 527 MPQSEYAF-LVDSGNQRELDLIKNFSKEE-DRM 557
A L++ ++ L I+ E +
Sbjct: 352 FGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L+ L+ + + + IVFV + L+ L+ + L G M
Sbjct: 21 LVHLL------KQPEATRSIVFVRKRERVHELANWLREAGINNCY----LEG------EM 64
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARM 527
+ +++ G +N+LVAT V G+DI V FD+P + +++ GR AR
Sbjct: 65 VQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA 124
Query: 528 PQSEYAF-LVDSGNQRELDLIKNFSKEEDRMNREIMD 563
+ A LV++ + L + + +E + ++D
Sbjct: 125 GRKGTAISLVEAHDHLLLGKVGRYIEE--PIKARVID 159
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 380 VFAAICRRDGIASDLS-CIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTAR 438
VF AI G SD+ I + + K +LI ILS +Q IVFV A
Sbjct: 262 VFVAIGIVGGACSDVKQTIYEVNK---YAKRSKLIEILS----EQADGTIVFVETKRGAD 314
Query: 439 ALSYILQNLKFLASWRC---HFLVGVNAGLKSMS-RNAMKSILEKFRSGELNLLVATKVG 494
L+ L + H G + S R L F++G + +L+AT V
Sbjct: 315 FLASFLSE----KEFPTTSIH-------GDRLQSQRE---QALRDFKNGSMKVLIATSVA 360
Query: 495 EEGLDIQTCCLVIRFDLPETV 515
GLDI+ VI +D+P +
Sbjct: 361 SRGLDIKNIKHVINYDMPSKI 381
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 9e-08
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 24/141 (17%)
Query: 380 VFAAICRRDGIASDLS-CIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTAR 438
+F A+ R + +++ + ++E S K L+ +L+ + +VFV A
Sbjct: 236 IFLAVGRVGSTSENITQKVVWVEE---SDKRSFLLDLLNA--TGKDSLTLVFVETKKGAD 290
Query: 439 ALSYILQNLKFLASWRC---HFLVGVNAGLKS-MSRNAMKSILEKFRSGELNLLVATKVG 494
+L L + + C H G +S R L +FRSG+ +LVAT V
Sbjct: 291 SLEDFLYH----EGYACTSIH-------GDRSQRDRE---EALHQFRSGKSPILVATAVA 336
Query: 495 EEGLDIQTCCLVIRFDLPETV 515
GLDI VI FDLP +
Sbjct: 337 ARGLDISNVKHVINFDLPSDI 357
|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-08
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
SRL ++ A K P + E G+ + F +V V + K A
Sbjct: 10 SRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVG--------NEVATGTGPNKKIA 61
Query: 1584 E-HAAEGMLWCLE 1595
+ +AAE ML L
Sbjct: 62 KKNAAEAMLLQLG 74
|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 1514 TGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIG 1573
+ G ++ L+E P ++C + + H+ FTFRV V I C G
Sbjct: 2 SSGSSGKTPIQVLHEYGMKT-KNIPVYECERSDVQIHVPTFTFRVTV------GDITCTG 54
Query: 1574 EPQAKKKGAAEH-AAEGMLWCLEREG 1598
E +KK A+H AAE + L+
Sbjct: 55 EGTSKKL--AKHRAAEAAINILKANA 78
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 421 LQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKF 480
+ + +VF ++ L L A ++ L R +L F
Sbjct: 28 VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQ-------ALHGDLSQGERE---RVLGAF 77
Query: 481 RSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
R GE+ +LVAT V GLDI LV+ + LP+ ++ GR
Sbjct: 78 RQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGR 121
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 27/181 (14%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL+ L+ I ++F + L L+ N G
Sbjct: 243 KLVELLEIFRD-------GILIFAQTEEEGKELYEYLKRF------------KFNVGETW 283
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEE----GLDI-QTCCLVIRFDLPETVASFIQSR 522
+ E F+ G++N+L+ + G+D+ + VI + P + +
Sbjct: 284 SEF---EKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQ 340
Query: 523 GRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDS 582
R + LV + + + F + R+ + +A +E +++V+
Sbjct: 341 ASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEE 400
Query: 583 S 583
S
Sbjct: 401 S 401
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 409 LLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSM 468
L L+ + + +VF ++ L L A ++ +
Sbjct: 19 LSDLL------YVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQ-------ALHGDMSQG 65
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
R ++ FR GE+ +LVAT V GLDI LV+ + +P+ ++ GR
Sbjct: 66 ERE---RVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118
|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
L EL W+ P + +E G H + FT VE + G K+ A
Sbjct: 4 GSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE----TFVETGSG---TSKQVAK 56
Query: 1584 EHAAEGML 1591
AAE +L
Sbjct: 57 RVAAEKLL 64
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRS 482
+ +VF + L+ +L+++ F A ++ L R ++ F+
Sbjct: 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAG-------AIHGDLSQSQRE---KVIRLFKQ 286
Query: 483 GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQSEYAF-LVDSGN 540
++ +L+AT V G+D+ VI + LP+ S++ GR R + A +++
Sbjct: 287 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346
Query: 541 QRELDLIKNFSK 552
++L I+ K
Sbjct: 347 YKKLRYIERAMK 358
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 403 PFFSKKLLRLIGILST--FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVG 460
F+ + + + + K I+F T + S++ L + F
Sbjct: 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAP---TVKFTSFLCSIL------KNEFKKD 366
Query: 461 VNA-GLKS-MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASF 518
+ +++N S++++F+ E +LV T VG G+D V++ +P +A++
Sbjct: 367 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 426
Query: 519 IQSRGR-AR 526
I GR AR
Sbjct: 427 IHRIGRTAR 435
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
+ ++ ++ FR GE ++L+ T V GLDI VI FD P+ + ++I GR R
Sbjct: 250 LPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR 309
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSK 552
M + A +K S+
Sbjct: 310 MGRKGEAITFILNEYWLEKEVKKVSQ 335
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 403 PFFSKKLLRLIGILST--FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVG 460
F+ + + + + K I+F T + S++ L + F
Sbjct: 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAP---TVKFTSFLCSIL------KNEFKKD 315
Query: 461 VNA-GLKS-MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASF 518
+ +++N S++++F+ E +LV T VG G+D V++ +P +A++
Sbjct: 316 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 375
Query: 519 IQSRGR-AR 526
I GR AR
Sbjct: 376 IHRIGRTAR 384
|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
SRL E P ++ +EG SH LF VI++ + +K A
Sbjct: 21 SRLQEYAQKYKLPTPVYEI-VKEGPSHKSLFQSTVILD----GVRYNSLPGFFNRKA--A 73
Query: 1584 EH-AAEGMLWCLEREG 1598
E AAE L L +
Sbjct: 74 EQSAAEVALRELAKSS 89
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 26/155 (16%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE-ESIGF 131
++ G GKT L LA R+ +++ LAPT ++ + + + F
Sbjct: 9 MTTVLDFHPGAGKTR-RFLPQI-LAECARRRLRTLV--LAPTRVVLSEMKEAFHGLDVKF 64
Query: 132 KVRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECH 189
+ F G + + + M L Y ++ ++I DE H
Sbjct: 65 HTQAFSAHGSGREV--------------IDAMCHATLTY-RMLEPTRVVNWEVIIMDEAH 109
Query: 190 HAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
S + MTA+P
Sbjct: 110 FLDPASIAARGWAAHRARANE----SATILMTATP 140
|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-06
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
++ S L E K P +D K EG +H FTFRV V + G
Sbjct: 12 PGKTPISLLQEYGTRI-GKTPVYDLLKAEGQAHQPNFTFRVTVG----DTSCTGQG---P 63
Query: 1578 KKKGAAEHAAEGMLWCLEREG 1598
KK A AAE L L+
Sbjct: 64 SKKAAKHKAAEVALKHLKGGS 84
|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
L + G H + FTF+VI++ E + + K A
Sbjct: 17 EELNTYRQKQGVVLK-YQELPNSGPPHDRRFTFQVIIDGRE-------FPEGEGRSKKEA 68
Query: 1584 EH-AAEGMLWCLEREGY 1599
++ AA+ + L +E
Sbjct: 69 KNAAAKLAVEILNKEKK 85
|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
+ L E + P + C K E L + FT V + I+ G KK A
Sbjct: 8 NLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEI------GGIKYTGAATRTKKDAE 61
Query: 1584 EHAAEGMLWCLERE 1597
A L ++ +
Sbjct: 62 ISAGRTALLAIQSD 75
|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
+ L EL W+ P + +E G +H K FT VE I G
Sbjct: 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE----RFIEIGSG---T 65
Query: 1578 KKKGAAEHAAEGML 1591
KK A +AA ML
Sbjct: 66 SKKLAKRNAAAKML 79
|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
SRL E P ++ +EG SH LF VI++ + +K A
Sbjct: 7 SRLQEYAQKYKLPTPVYEI-VKEGPSHKSLFQSTVILD----GVRYNSLPGFFNRKA--A 59
Query: 1584 EH-AAEGML 1591
E AAE L
Sbjct: 60 EQSAAEVAL 68
|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
L EL W+ P + +E G +H K FT VE IG +KK A
Sbjct: 20 GALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE------RFIEIGSGTSKKL--A 71
Query: 1584 E-HAAEGML 1591
+ +AA ML
Sbjct: 72 KRNAAAKML 80
|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAK-KKGA 1582
+L + + T+ G H + FTF+V+++ + E + + K+ A
Sbjct: 18 DKLNKYRQMH-GVAITYKELSTSGPPHDRRFTFQVLIDEKE-------FPEAKGRSKQEA 69
Query: 1583 AEHAAEGMLWCLEREG 1598
AA+ + L+ E
Sbjct: 70 RNAAAKLAVDILDNEN 85
|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 1517 LQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQ 1576
++ L E + ++ E G SH K F V V+ + + G
Sbjct: 14 KHGKNPVMELNEK-----RRGLKYELISETGGSHDKRFVMEVEVD----GQKFQGAG--- 61
Query: 1577 AKKKGAAEHAAEGML 1591
+ KK A +AA L
Sbjct: 62 SNKKVAKAYAALAAL 76
|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 1517 LQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQ 1576
++ L E ++ E G SH K F V V+ + + G
Sbjct: 4 KHGKNPVMELNEKRRG-----LKYELISETGGSHDKRFVMEVEVD----GQKFQGAG--- 51
Query: 1577 AKKKGAAEHAAEGML 1591
+ KK A +AA L
Sbjct: 52 SNKKVAKAYAALAAL 66
|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
++ L EL +D E G SH K F V+V+ + E G
Sbjct: 2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVD----GQFFEGSG---R 49
Query: 1578 KKKGAAEHAAEGMLWCL 1594
KK A AA+ L +
Sbjct: 50 NKKLAKARAAQSALATV 66
|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 1515 GGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGE 1574
G + ++ LY C P ++ + G + + F V VE G
Sbjct: 1 GSSGSSGIKNFLYAWCGKRKM-TPAYE-IRAVGNKNRQKFMCEVRVE------GFNYAGM 52
Query: 1575 PQAK-KKGAAEHAAEGMLWCLEREGYL 1600
+ KK A +AA + L R +
Sbjct: 53 GNSTNKKDAQSNAARDFVNYLVRINEV 79
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1601 | ||||
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 2e-18 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-15 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 2e-15 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 0.002 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 7e-15 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 1e-10 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-14 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 1e-10 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 7e-10 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 4e-08 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 8e-08 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 4e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 6e-07 | |
| d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain | 8e-07 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 2e-06 | |
| d1uila_ | 113 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { | 4e-06 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 5e-06 | |
| d2nuga2 | 68 | d.50.1.1 (A:151-218) RNase III, C-terminal domain | 8e-06 | |
| d1ekza_ | 76 | d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros | 9e-06 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 2e-05 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 4e-05 | |
| d1qu6a1 | 90 | d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p | 1e-04 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-04 | |
| d1di2a_ | 69 | d.50.1.1 (A:) Double-stranded RNA-binding protein | 2e-04 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 2e-04 | |
| d1uhza_ | 89 | d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul | 2e-04 | |
| d2b7va1 | 71 | d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R | 3e-04 | |
| d2cpna1 | 76 | d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu | 5e-04 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 7e-04 | |
| d1t4oa_ | 81 | d.50.1.1 (A:) RNase III, C-terminal domain {Baker' | 8e-04 | |
| d1whqa_ | 99 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { | 0.002 | |
| d2dixa1 | 73 | d.50.1.1 (A:7-79) Interferon-inducible double stra | 0.004 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 0.004 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 81.8 bits (201), Expect = 2e-18
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1274
LE LG+ F + LL +A H S+++ Y+ LEFLGDA++++ I L P + G
Sbjct: 5 LEKKLGYTFKDKSLLEKALTHVSYSK-KEHYETLEFLGDALVNFFIVDLLVQYSPNKREG 63
Query: 1275 QLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPR 1334
L+ L++ L++ + F +A +KF+ G
Sbjct: 64 FLSPLKAYLISEEFFNLLAQKLELHKFIRIKR-------------------------GKI 98
Query: 1335 CPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK 1374
++GD+ E+ A+ +DSG + N ++ +
Sbjct: 99 NETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDIL 138
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.5 bits (187), Expect = 2e-15
Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 21/272 (7%)
Query: 289 SEQLAEIKR--EQYISALSRKLHDHQSLRNTTKQLNR--LHDSMKFCLENL--------G 336
E E+++ + + + L + L +++ + + + + + E + G
Sbjct: 12 PEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRG 71
Query: 337 VCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSC 396
+ + L E + + + A I + +++ I + +S
Sbjct: 72 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISL 131
Query: 397 IEVLKEPFFSK-KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWR 454
+ KE K+ +L I+ + +Q+ K IVF N TA + N +
Sbjct: 132 LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETA----KKIVNELVKDGIK 187
Query: 455 CHFLVGVNAGL--KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP 512
VG + + +S+ K IL++F GE N+LVAT VGEEGLD+ LV+ ++
Sbjct: 188 AKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV 247
Query: 513 ETVASFIQSRGRA-RMPQSEYAFLVDSGNQRE 543
+ IQ RGR R L+ G + E
Sbjct: 248 PSAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 279
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 73.7 bits (180), Expect = 2e-15
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSF--------NRLGGCYQRLEFLGDAVLDYLITSYLYS 1266
+ G F + LL +A H S+ + ++LEFLGDAVL+ + LY
Sbjct: 14 FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 73
Query: 1267 VYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSST 1326
YP+ + G L ++S + + A V+ + KFL
Sbjct: 74 KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEK---------------- 117
Query: 1327 REVKEGPRCPKVLGDLVESSLGAILLDSGFNL--NTVWKIMLSFLDPILK 1374
G +L D E+ L AI LD G+ + +++ I+K
Sbjct: 118 ---TGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK 164
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.7 bits (89), Expect = 0.002
Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 51/176 (28%)
Query: 1022 EMLLKALT---------TEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTR 1072
E+L +AL ++ S E+LE LGDA L+ V L+ + + G+L R
Sbjct: 26 ELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 85
Query: 1073 RRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGR 1132
+S A + L ++ + NL ++ +
Sbjct: 86 VKSAAASEEVLAMVSRKMNLGKFLFLGKGEE----------------------------- 116
Query: 1133 APDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAF-LKWIGIQVE 1187
K +AD EAL+ A D G++ + +E
Sbjct: 117 ------------KTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIE 160
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 70.8 bits (173), Expect = 7e-15
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 1247 RLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDS 1306
L ++GDAV + I +L ++P QL L + V+ +A A V FL +
Sbjct: 10 ALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEE 68
Query: 1307 NVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIML 1366
+ N +S K E+ +G L + + +I+
Sbjct: 69 EAVLRRGRNA-------NSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNR--ERLDEIVY 119
Query: 1367 SFLDPILK 1374
+ + +
Sbjct: 120 KAIAVLEE 127
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 58.8 bits (142), Expect = 1e-10
Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 30/153 (19%)
Query: 1035 ERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQV 1094
++ + L +GDA + + HL V +L R ++ V+ K+
Sbjct: 4 KQLNSLALAYMGDAVYEQYIRYHLLQ-KGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETA 62
Query: 1095 YIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKT 1154
++ ++ + GR NA + +
Sbjct: 63 FLTEEEEAVLRR------------------------GR-----NANSGTVPKNTDVQTYR 93
Query: 1155 IADVVEALVGAFIDDSGFKAATAFLKWIGIQVE 1187
+ EAL+G + + + +E
Sbjct: 94 HSTAFEALIGYHHLLNNRERLDEIVYKAIAVLE 126
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 72.1 bits (175), Expect = 1e-14
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + K E N ++ L TG GKT IA+++ + LAPT LV
Sbjct: 11 RIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT----KYGGKVLMLAPTKPLVL 66
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMEL 179
Q A+ + KS + K + +V+V PQ + L I +E
Sbjct: 67 QHAESFRRLFNLPPEKIVALTGE-KSPEERSKAWARAKVIVATPQTIENDLLAGRISLED 125
Query: 180 IALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKS 239
++L++FDE H N+ Y I +++ + K P + G+TASP + P+
Sbjct: 126 VSLIVFDEAHR--AVGNYAYVFIAREYKR--QAKNPLVIGLTASP---------GSTPEK 172
Query: 240 INSLENLLDAKVYSV--EDAEDLESFV 264
I + N L + E++ D+ +V
Sbjct: 173 IMEVINNLGIEHIEYRSENSPDVRPYV 199
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 62.2 bits (151), Expect = 1e-10
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 8/143 (5%)
Query: 398 EVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHF 457
L + I + + + + ++F + L+ L L A
Sbjct: 14 VALSTTGEIPFYGKAIPL----EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRG 69
Query: 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKV---GEEGLDIQTCCLVIRFDLPET 514
L L +G+ + ++ + + LP+
Sbjct: 70 LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQD 129
Query: 515 VASFIQSRGRA-RMPQSEYAFLV 536
S Q RGR R Y F+
Sbjct: 130 AVSRTQRRGRTGRGKPGIYRFVA 152
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 56.4 bits (135), Expect = 7e-10
Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 26/151 (17%)
Query: 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVR 134
++ TG GK+ + + + L P+VA + ++ G
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKV--------LVLNPSVAATLGFGAYMSKAHGVDPN 62
Query: 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVK 194
G L ++I I DECH
Sbjct: 63 IRTGVRTITTGSPIT----------YSTYGKFLADGGCSGGAYDII---ICDECHSTDAT 109
Query: 195 SNHPYAKIMKDF-YKPDIMKVPRIFGMTASP 224
S ++ + TA+P
Sbjct: 110 SILGIGTVLDQAETAGAR----LVVLATATP 136
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 54.1 bits (129), Expect = 4e-08
Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 19/175 (10%)
Query: 51 TDKDPKQIARKYQLELCKKAMEEN-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICI 109
+ + YQ + + + I+ L T G++ I LA + + +
Sbjct: 106 YSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLI----QALLARYYLENYEGKIL 161
Query: 110 FLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYC 169
+ PT AL Q A + F K K+ ++
Sbjct: 162 IIVPTTALTTQMADDFVDYRLFSHAMIK------KIGGGASKDDKYKNDAPVVVGTWQTV 215
Query: 170 LYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
+ +++ DECH A KS + I+ FG++ S
Sbjct: 216 VKQPKEWFSQFGMMMNDECHLATGKS---ISSIISGLNNC-----MFKFGLSGSL 262
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.2 bits (124), Expect = 8e-08
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ + ++ + + + L TG GKTH+A+ I EL+ + + PT+AL
Sbjct: 72 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELST--------PTLIVVPTLALA 123
Query: 119 QQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKME 178
+Q + + V F G + + Y+ + + L +RF
Sbjct: 124 EQWKERLGIFGEEYVGEFSG-----RIKELKPLTVSTYDSAYVNAE----KLGNRF---- 170
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
LLIFDE HH +S Y +I + P G+TA+
Sbjct: 171 --MLLIFDEVHHLPAES---YVQIAQMS------IAPFRLGLTATF 205
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 51.5 bits (122), Expect = 4e-07
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 20/165 (12%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
I+ L G GKT + I + I++ + + LAPT + + +
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAI--VREAIKRGLR--TLILAPTRVVAAEMEE--------- 56
Query: 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
G R ++ + + V +M I++ L+I DE H
Sbjct: 57 --ALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTM-RLLSPIRVPNYNLIIMDEAHFTD 113
Query: 193 VKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLP 237
S I + MTA+P + Q+N P
Sbjct: 114 PASIAARGYISTRVEMGEA----AGIFMTATPPGSRDPFPQSNAP 154
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 48.1 bits (113), Expect = 6e-07
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 20/152 (13%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++ G GKT + I ++ + LAPT ++ +
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQILAECA----RRRLRTLVLAPTRVVLSEMK---------- 53
Query: 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
F G + + + + M L Y + + ++I DE H
Sbjct: 54 -EAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNW-EVIIMDEAHFLD 111
Query: 193 VKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
S + MTA+P
Sbjct: 112 PASIAARGWAAHRARANE----SATILMTATP 139
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 45.6 bits (108), Expect = 8e-07
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
+ L E+ + PP + + E ++F V V + I G KK A
Sbjct: 4 TALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVN---GKTIATGKG---RTKKEAE 57
Query: 1584 EHAAEGML 1591
+ AA
Sbjct: 58 KEAARIAY 65
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
Q E +K +N+++ + T GKT L+ E+A + + +++ P AL
Sbjct: 27 FPPQAEAVEKVFSGKNLLLAMPTAAGKT-----LLAEMAMVREAIKGGKSLYVVPLRALA 81
Query: 119 QQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKME 178
++ + ++ +R +++V + + +R ++
Sbjct: 82 GEKYESFKKWEKIGLRIGISTGDYESRDEHL----GDCDIIVTTSEKADSLIRNRASWIK 137
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTA 222
++ L+ DE H + +I+ + + K R+ G++A
Sbjct: 138 AVSCLVVDEIHLLDSEKRGATLEILVTKMR-RMNKALRVIGLSA 180
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.4 bits (107), Expect = 4e-06
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 1502 GSSC----DIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFR 1557
GSS ++ + G +A++RL + + + G H + F
Sbjct: 4 GSSGLESEEVDLNAGLHGNWTLENAKARLNQYFQKE-KIQGEY-KYTQVGPDHNRSFIAE 61
Query: 1558 VIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREGYL 1600
+ + I+ + I E + KK AA+ A ++ L G +
Sbjct: 62 MTIYIKQLGRRI-FAREHGSNKKLAAQSCALSLVRQLYHLGVI 103
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 46.7 bits (110), Expect = 5e-06
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 442 YILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQ 501
+ + L + + V + I+ R G+ ++LV + EGLDI
Sbjct: 39 LTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIP 98
Query: 502 TCCLVIRFDLP-----ETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDR 556
LV D + S IQ+ GRA + + + + +E +
Sbjct: 99 EVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVI----MYADTITKSMEIAIQETK 154
Query: 557 MNREI 561
R I
Sbjct: 155 RRRAI 159
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 43.0 bits (101), Expect = 8e-06
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKG 1581
++ L E+ + P + EG H K F K +GE ++KK+
Sbjct: 2 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAK------IKEYRTLGEGKSKKE- 54
Query: 1582 AAEHAAEGMLWCLE 1595
A + AAE ++ LE
Sbjct: 55 AEQRAAEELIKLLE 68
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 43.1 bits (101), Expect = 9e-06
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
+S S+++E+ F +EEG +H+K F IV E
Sbjct: 5 DKKSPISQVHEIGIKRNM-TVHFKVLREEGPAHMKNFITACIVGSIVTEG-------EGN 56
Query: 1578 KKKGAAEHAAEGMLWCLER 1596
KK + + AAE ML L++
Sbjct: 57 GKKVSKKRAAEKMLVELQK 75
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.5 bits (107), Expect = 2e-05
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 32/164 (19%)
Query: 407 KKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
+ + L IL I++ A + L+N G+
Sbjct: 12 ESISTLSSILEKLG----TGGIIYARTGEEAEEIYESLKN-------------KFRIGIV 54
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDI-----QTCCLVIRFDLPETVASFIQS 521
+ ++ K EKF GE++ L+ T L + + P F +
Sbjct: 55 TATK---KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVT 107
Query: 522 RGR-ARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDR 564
+ L R +D I+ +R E+ +
Sbjct: 108 IEDIDSLSPQMVKLLAYLY--RNVDEIERLLPAVERHIDEVREI 149
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.5 bits (104), Expect = 4e-05
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R Q K+ + E+ TG GKT + + LA ++ C + PT LV
Sbjct: 45 RAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR-----CYVIFPTSLLV 99
Query: 119 QQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
Q A+ I E G G + ++ Q I L +
Sbjct: 100 IQAAETIRKYAEKAGVGTENLIGYYHG-RIPKREKENFMQNLRNFKIVITTTQFLSKHYR 158
Query: 176 KMELIALLIFDECHH 190
++ + D+
Sbjct: 159 ELGHFDFIFVDDVDA 173
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (93), Expect = 1e-04
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
L + G H + FTF+VI++ + E G KK A
Sbjct: 17 EELNTYRQKQ-GVVLKYQELPNSGPPHDRRFTFQVIID---GREFPEGEGR---SKKEAK 69
Query: 1584 EHAAEGMLWCLERE 1597
AA+ + L +E
Sbjct: 70 NAAAKLAVEILNKE 83
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.2 bits (98), Expect = 2e-04
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
K+ +L IL R K I+F +S + + +
Sbjct: 78 KNKIRKLREILERHR---KDKIIIFTRHNELVYRISKV---------FLIPAITH----- 120
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
SR + ILE FR+G +V+++V +EG+D+ + + + +IQ GR
Sbjct: 121 -RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 179
Query: 526 -RMPQSEYAFLV 536
R + + ++
Sbjct: 180 LRPSKGKKEAVL 191
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
L EL W+ P + +E G H + FT V + G +K+ A
Sbjct: 4 GSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRV------ETFVETGSGTSKQV-AK 56
Query: 1584 EHAAEGMLWCLE 1595
AAE +L +
Sbjct: 57 RVAAEKLLTKFK 68
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 41.6 bits (97), Expect = 2e-04
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 420 RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEK 479
R + + +V V + A L+ L A + ++ L + R +++
Sbjct: 27 RAARGERTLVTVLTVRMAEELTSFLVEHGIRARY-------LHHELDAFKRQ---ALIRD 76
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVI-----RFDLPETVASFIQSRGRAR 526
R G + LV + EGLDI LV + + S IQ+ GRA
Sbjct: 77 LRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 128
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 1515 GGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGE 1574
G + SRL ++ A K P + E G+ + F +V V E
Sbjct: 1 GSSGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-------GNEVATG 53
Query: 1575 PQAKKKGAAEHAAEGML 1591
KK A ++AAE ML
Sbjct: 54 TGPNKKIAKKNAAEAML 70
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (90), Expect = 3e-04
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
++ L EL +D E G SH K F V+V+ + E G
Sbjct: 2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVD----GQFFEGSG---R 49
Query: 1578 KKKGAAEHAAEGML 1591
KK A AA+ L
Sbjct: 50 NKKLAKARAAQSAL 63
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 1524 SRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAA 1583
L EL W+ P + +E G +H K FT VE KK A
Sbjct: 13 GALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG-------SGTSKKLAK 65
Query: 1584 EHAAEGML 1591
+AA ML
Sbjct: 66 RNAAAKML 73
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 7e-04
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 16/160 (10%)
Query: 407 KKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
K L + T + Q ++F N L+ ++ F S
Sbjct: 20 WKFDTLCDLYDTLTITQ---AVIFCNTKRKVDWLTEKMREANFTVSSMHGD--------- 67
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-A 525
M + +SI+++FRSG +L++T V GLD+ L+I +DLP +I GR
Sbjct: 68 -MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSG 126
Query: 526 RMPQSEYAFLVDSGNQREL--DLIKNFSKEEDRMNREIMD 563
R + A + + D+ + +S + D M + D
Sbjct: 127 RYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVAD 166
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (87), Expect = 8e-04
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 1519 NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAK 1578
+ +A+ +LY L + K+ + +G +
Sbjct: 5 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVG-------DGTVLGTGVGR 56
Query: 1579 KKGAAEH-AAEGML 1591
A AAE L
Sbjct: 57 NIKIAGIRAAENAL 70
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.5 bits (86), Expect = 0.002
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKK 1579
++ LY C P + + F V + G +
Sbjct: 6 SGIKNFLYAWCGKRKMTPAYEIRAVGNK--NRQKFMCEVR------VEGFNYAGMGNSTN 57
Query: 1580 KGAAEH-AAEGMLWCLEREGYL 1600
K A+ AA + L R +
Sbjct: 58 KKDAQSNAARDFVNYLVRINEV 79
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (81), Expect = 0.004
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKK 1579
++ L+E P ++C + + H+ FTFRV V K
Sbjct: 2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE-------GTSK 53
Query: 1580 KGAAEHAAEGMLWCLERE 1597
K A AAE + L+
Sbjct: 54 KLAKHRAAEAAINILKAN 71
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.004
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 1518 QNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQA 1577
+S L+E P ++ + E S F V I+ + +
Sbjct: 7 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSE----PFGASVTIDG----VTYGSGTAS 58
Query: 1578 KKKGAAEHAAEGML 1591
KK A AA L
Sbjct: 59 SKKLAKNKAARATL 72
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1601 | |||
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 100.0 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.97 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.97 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.95 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.94 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.93 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.92 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.92 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.92 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.92 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.92 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.91 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.91 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.91 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.9 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.9 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.9 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.89 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.88 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.87 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.84 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.83 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.82 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.81 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.8 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.79 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.79 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.77 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.77 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.76 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.73 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.71 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.71 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.71 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.68 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.68 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.67 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.66 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.64 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.64 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.63 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.63 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.62 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.62 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.61 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.6 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.6 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.59 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.59 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.56 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.5 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.44 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.38 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 99.24 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 99.24 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.21 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.17 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.11 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.09 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.08 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.07 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.07 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.06 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.05 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.05 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.04 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.02 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.02 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 98.97 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.96 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 98.95 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.9 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.83 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.74 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.71 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.66 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.58 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.43 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 98.14 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.83 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.78 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 97.54 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.3 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.11 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 97.04 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.0 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.93 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.53 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.09 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 96.01 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.83 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.54 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.38 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.27 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 95.26 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 95.25 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.18 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 95.01 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 94.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.7 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.0 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 93.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.52 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.48 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.43 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.41 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 93.39 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.97 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 92.88 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.48 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 92.28 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.64 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.33 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.67 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.53 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.26 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 88.22 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.0 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.73 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.99 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 86.91 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.9 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.17 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 84.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 83.95 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 81.6 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 80.8 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 80.7 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 80.42 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.4e-36 Score=243.01 Aligned_cols=137 Identities=27% Similarity=0.484 Sum_probs=127.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 99999993981389879998614888888998874012146899999999999974999992069999999209499999
Q 000380 1212 MATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFAN 1291 (1601)
Q Consensus 1212 ~~~le~~lgy~F~~~~lL~~Alth~S~~~~~~~yerLeflGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~ 1291 (1601)
++.+|++|||+|+|+.||.+||||+||.. ..+|||||||||+||+++++.|+|.+||+.++|.||.+|+.+|||.+||.
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~-~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~ 80 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSK-KEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 80 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCS-SSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999998986288899999866857688-75509999999888754557899850877516788777777641367665
Q ss_pred HHHHCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99984944577306920135564312100378984222479999841255899964412013898868999999995222
Q 000380 1292 VAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP 1371 (1601)
Q Consensus 1292 ~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~~~~~~~~~l~~ 1371 (1601)
+|.++||+++++.+.+ ...+|+++|+|||+|||||+|+|+++..+++|+.+++.|
T Consensus 81 ~a~~lgl~~~i~~~~~-------------------------~~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~ 135 (148)
T d2nuga1 81 LAQKLELHKFIRIKRG-------------------------KINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE 135 (148)
T ss_dssp HHHTTTGGGTCBSCTT-------------------------CCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-------------------------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 7888508899875264-------------------------201036578999988776422687799999999999999
Q ss_pred HHH
Q ss_conf 211
Q 000380 1372 ILK 1374 (1601)
Q Consensus 1372 ~~~ 1374 (1601)
.+.
T Consensus 136 ~i~ 138 (148)
T d2nuga1 136 DIL 138 (148)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.97 E-value=1.7e-30 Score=204.77 Aligned_cols=267 Identities=21% Similarity=0.195 Sum_probs=166.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 69899946960699999999999999961899958999917865799999999987098199984798767743218863
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~ 152 (1601)
+++|+.+|||+|||++++.++.+ .... .+.++++++||++|+.|+++.++... ..+.....+. +.
T Consensus 10 ~~~lv~~~TGsGKT~~~l~~~~~--~~~~--~~~~~lvi~Ptr~La~q~~~~l~~~~-~~~~~~~~~~--------~~-- 74 (305)
T d2bmfa2 10 RLTIMDLHPGAGKTKRYLPAIVR--EAIK--RGLRTLILAPTRVVAAEMEEALRGLP-IRYQTPAIRA--------EH-- 74 (305)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHH--HHHH--HTCCEEEEESSHHHHHHHHHHTTTSC-CBCCC-----------------
T ss_pred CCEEEEECCCCCHHHHHHHHHHH--HHHH--CCCEEEEECCHHHHHHHHHHHHHCCC-CCEEEEEEEE--------CC--
T ss_conf 94999979999787999999999--9872--69989998238999999999985487-5211137850--------12--
Q ss_pred HCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 03670999849999998821666865152999965764433489749999998729998999889998134568998763
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASA 232 (1601)
Q Consensus 153 ~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~~~p~ilgLTATP~~~~~~~~ 232 (1601)
-....++++|+++|...... ...+.+++++||||||++..++. ....++..... ....+++++|||+........
T Consensus 75 ~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~~~-~~~~~l~~~~~---~~~~~~v~~SAT~~~~~~~~~ 149 (305)
T d2bmfa2 75 TGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASI-AARGYISTRVE---MGEAAGIFMTATPPGSRDPFP 149 (305)
T ss_dssp -CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHHHH-HHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHC-CCCCCCEEEEEEEEEEECCHHHH-HHHHHHHHHHC---CCCCEEEEEECCCCCCEEEEC
T ss_conf 57653013774899999845-85315400898530111252057-88899998416---653138994157876433402
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 56658999999985058199206977784004887299998068887787325569999999999999998522001331
Q 000380 233 QANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQ 312 (1601)
Q Consensus 233 ~~~~~~~i~~Le~~l~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~l~~~~~~~~ 312 (1601)
. ...|........+...
T Consensus 150 ~------------------------------~~~~~~~~~~~~~~~~--------------------------------- 166 (305)
T d2bmfa2 150 Q------------------------------SNAPIMDEEREIPERS--------------------------------- 166 (305)
T ss_dssp C------------------------------CSSCEEEEECCCCCSC---------------------------------
T ss_pred C------------------------------CCCCCEEEEEECCHHH---------------------------------
T ss_conf 3------------------------------4786127998615888---------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 14659999999766699999962242799999997207255778989741588724899999999999998871389778
Q 000380 313 SLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIAS 392 (1601)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 392 (1601)
T Consensus 167 -------------------------------------------------------------------------------- 166 (305)
T d2bmfa2 167 -------------------------------------------------------------------------------- 166 (305)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 64012100388788889999999953135898049999332416999999999500011343114772047877689999
Q 000380 393 DLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNA 472 (1601)
Q Consensus 393 ~~~~~~~~~~~~~s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~ 472 (1601)
..... . .+ ...+.++||||+++..++.++..|.+.+. + +..+|++ +.
T Consensus 167 ------------~~~~~---~-~~----~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----~---~~~l~~~---~~--- 213 (305)
T d2bmfa2 167 ------------WNSGH---E-WV----TDFKGKTVWFVPSIKAGNDIAACLRKNGK----K---VIQLSRK---TF--- 213 (305)
T ss_dssp ------------CSSCC---H-HH----HSSCSCEEEECSCHHHHHHHHHHHHHHTC----C---CEECCTT---CH---
T ss_pred ------------HHHHH---H-HH----HHHCCCEEEEECCHHHHHHHHHHHHHCCC----C---EEEECCC---CH---
T ss_conf ------------99999---9-99----96079989996309999999999986799----8---9995783---84---
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEE----------ECCC----------CCCHHHHHHHHHCC-CCCCCE
Q ss_conf 99999987249932999805543585688866799----------7079----------98998999986047-899970
Q 000380 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVI----------RFDL----------PETVASFIQSRGRA-RMPQSE 531 (1601)
Q Consensus 473 r~~vl~~Fr~g~~~iLVaT~vleeGIDip~~~~VI----------~fd~----------p~s~~~yiQr~GRA-R~g~s~ 531 (1601)
......|++|..+++|||++++.|+|++ .+.|| .||. |.|..+|+||+||+ |.++.+
T Consensus 214 -~~~~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~ 291 (305)
T d2bmfa2 214 -DSEYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNE 291 (305)
T ss_dssp -HHHGGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCC
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf -7777543100011355567887257888-40899758741465733898763880445699889832411868289992
Q ss_pred EEE-EEE
Q ss_conf 999-992
Q 000380 532 YAF-LVD 537 (1601)
Q Consensus 532 ~vi-lv~ 537 (1601)
... ++.
T Consensus 292 ~~~~~~~ 298 (305)
T d2bmfa2 292 NDQYIYM 298 (305)
T ss_dssp CEEEEEC
T ss_pred EEEEEEC
T ss_conf 6999989
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=7.3e-29 Score=194.51 Aligned_cols=178 Identities=29% Similarity=0.392 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC---C
Q ss_conf 3122049999999998506989994696069999999999999996189995899991786579999999998709---8
Q 000380 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG---F 131 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~al~~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~---l 131 (1601)
....||+||.++++.+.++|+|+++|||+|||+++++++.... .. .+++++|++|+++|+.||++.++++++ .
T Consensus 6 ~~~~pr~~Q~~~~~~~~~~n~lv~~pTGsGKT~i~~~~~~~~~--~~--~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~ 81 (200)
T d1wp9a1 6 DLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRL--TK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (200)
T ss_dssp HHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHH--HH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH--HH--CCCCEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 7789889999999999639969991899728899999999999--70--6981899737057777889999986335542
Q ss_pred CEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 19998479876774321886303670999849999998821666865152999965764433489749999998729998
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~ 211 (1601)
++..+.++.....+...|. ..+|+++||+.+.+.+....+.+.+++++|+||||++. .++.+..+...+....
T Consensus 82 ~v~~~~~~~~~~~~~~~~~----~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~--~~~~~~~~~~~~~~~~- 154 (200)
T d1wp9a1 82 KIVALTGEKSPEERSKAWA----RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV--GNYAYVFIAREYKRQA- 154 (200)
T ss_dssp GEEEECSCSCHHHHHHHHH----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS--TTCHHHHHHHHHHHHC-
T ss_pred CEEEEECCCCHHHHHHHHH----CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHH--CCHHHHHHHHHHHHCC-
T ss_conf 0134203664567777651----14222343202577876313311566618998621131--2216899999998658-
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 999889998134568998763566589999999850581992
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS 253 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~~~~ 253 (1601)
..+++++|||||... ...+.++...++...+.
T Consensus 155 -~~~~~l~~SATp~~~---------~~~~~~~~~~l~~~~i~ 186 (200)
T d1wp9a1 155 -KNPLVIGLTASPGST---------PEKIMEVINNLGIEHIE 186 (200)
T ss_dssp -SSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEEE
T ss_pred -CCCCEEEEEECCCCC---------HHHHHHHHHCCCCEEEE
T ss_conf -998579999617973---------99999998469954999
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.94 E-value=1.7e-27 Score=185.96 Aligned_cols=125 Identities=29% Similarity=0.356 Sum_probs=110.1
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHH
Q ss_conf 99998732799999667978999971743434789974200001247878999999862899996332898866404299
Q 000380 1003 IELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082 (1601)
Q Consensus 1003 ~~l~~~l~~~~~~~~~~~~~~ll~AlT~~~~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~ 1082 (1601)
+++.+.|++.|. ++.++.+||||+|+....||||||||||++|+++++.+||.+||+.++|.||..|+.+|||.+
T Consensus 3 ~~le~~igy~F~-----n~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~ 77 (148)
T d2nuga1 3 EQLEKKLGYTFK-----DKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 77 (148)
T ss_dssp HHHHHHHTCCCS-----SHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHCCCCC-----CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899999898628-----889999986685768875509999999888754557899850877516788777777641367
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999985984320236778886434799755566511112010235999998731000147774332212588999997
Q 000380 1083 LLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEAL 1162 (1601)
Q Consensus 1083 L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAl 1162 (1601)
|+.+|.++||++||+.. .+ ...+|++||+|||+
T Consensus 78 La~~a~~lgl~~~i~~~-----------~~------------------------------------~~~~kilad~~EAi 110 (148)
T d2nuga1 78 FNLLAQKLELHKFIRIK-----------RG------------------------------------KINETIIGDVFEAL 110 (148)
T ss_dssp HHHHHHTTTGGGTCBSC-----------TT------------------------------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-----------CC------------------------------------CCHHHHHHHHHHHH
T ss_conf 66578885088998752-----------64------------------------------------20103657899998
Q ss_pred HHCCCCCCCHHH--HHHHH
Q ss_conf 403124568699--99999
Q 000380 1163 VGAFIDDSGFKA--ATAFL 1179 (1601)
Q Consensus 1163 iGA~~~~~g~~~--a~~~~ 1179 (1601)
|||+|+|+|.+. +.+++
T Consensus 111 iGAiylD~g~~~~~~~~~i 129 (148)
T d2nuga1 111 WAAVYIDSGRDANFTRELF 129 (148)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
T ss_conf 8776422687799999999
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.93 E-value=2.8e-25 Score=172.06 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC---C
Q ss_conf 12204999999999850-6989994696069999999999999996189995899991786579999999998709---8
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG---F 131 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~---l 131 (1601)
...||+||.+++..+++ ++.++.+|||+|||+++.++++.+.. . ...++|||||+++|+.||++.+.++.. .
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~---~-~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~ 186 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE---N-YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH---H-CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---C-CCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 46564677787799985497216887115830788999998653---2-5632899976722578999999875036534
Q ss_pred CEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 19998479876774321886303670999849999998821666865152999965764433489749999998729998
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~ 211 (1601)
.+..+.++...... + ....+|+++|+|.+.+... ..++++++||+|||||+. ...+..||..+
T Consensus 187 ~~~~~~~g~~~~~~---~---~~~~~i~i~t~qs~~~~~~---~~~~~f~~VIvDEaH~~~---a~~~~~il~~~----- 249 (282)
T d1rifa_ 187 MIKKIGGGASKDDK---Y---KNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLAT---GKSISSIISGL----- 249 (282)
T ss_dssp GEEECSTTCSSTTC---C---CTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCC---HHHHHHHTTTC-----
T ss_pred CCEEECCEECCCCC---C---CCCCEEEEEEEEHHHHHCC---CCCCCCCEEEEECCCCCC---CHHHHHHHHHC-----
T ss_conf 53034020025652---3---3232699986403222021---005788799998997888---32099999746-----
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99988999813456899876356658999999985058
Q 000380 212 MKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA 249 (1601)
Q Consensus 212 ~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~ 249 (1601)
.+.+.++||||||...+.. ...|+.+++.
T Consensus 250 ~~~~~rlGlTaT~~~~~~~---------~~~l~g~~Gp 278 (282)
T d1rifa_ 250 NNCMFKFGLSGSLRDGKAN---------IMQYVGMFGE 278 (282)
T ss_dssp TTCCEEEEECSSCCTTSTT---------HHHHHHHHCE
T ss_pred CCCCEEEEEEEECCCCCCC---------EEEEEEECCC
T ss_conf 1889699999615998734---------4898420677
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=3.3e-25 Score=171.55 Aligned_cols=138 Identities=32% Similarity=0.419 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHH-CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC--CCCCCHHHHHHHHHHHHC
Q ss_conf 8889999999953-1358980499993324169999999995000113431147720478--776899999999998724
Q 000380 406 SKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAG--LKSMSRNAMKSILEKFRS 482 (1601)
Q Consensus 406 s~K~~~L~~iL~~-~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g--~~~~~~~~r~~vl~~Fr~ 482 (1601)
++|+..|.++|.. +....+.++||||+++.++..+++.|...+ +++..+.|.... ..+++.++|..+++.|++
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~ 217 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG----IKAKRFVGQASKENDRGLSQREQKLILDEFAR 217 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT----CCEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCCHHCHHHHHHHHHHHHC
T ss_conf 82899999999999971899848999671886799999999769----96488605664334201022889999999876
Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCCHHHHHHH
Q ss_conf 9932999805543585688866799707998998999986047-8999709999927987689999
Q 000380 483 GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQRELDLI 547 (1601)
Q Consensus 483 g~~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~~~~~~~~~~~ 547 (1601)
|++++||||+++++|||+|+|++||+||+|+|+..|+||+||+ |.+....++|+..+..++..++
T Consensus 218 g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~~ee~~~~ 283 (286)
T d1wp9a2 218 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYW 283 (286)
T ss_dssp TSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHHHHH
T ss_pred CCCCEEEECCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf 998299971440203668889989995899898999999985787999889999838988999886
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=2.2e-24 Score=166.37 Aligned_cols=141 Identities=28% Similarity=0.276 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 999312204999999999850-6989994696069999999999999996189995899991786579999999998709
Q 000380 52 DKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 52 ~~~~~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~ 130 (1601)
.......+|+||.++++.+++ ++.++.+|||+|||++++..+.++ ++++||+||+++|+.||.+.++.+.+
T Consensus 64 ~~~~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~Liv~p~~~L~~q~~~~~~~~~~ 135 (206)
T d2fz4a1 64 YFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIFGE 135 (206)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGGCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHH--------CCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 7789998499999999999967990999578998264377678774--------67245787242248999999986155
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 81999847987677432188630367099984999999882166686515299996576443348974999999872999
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~ 210 (1601)
..+..+.|+... ..+|+++|++.+...... ..+++++||+|||||+. ...+..+++.+
T Consensus 136 ~~~~~~~~~~~~------------~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~---a~~~~~i~~~~---- 193 (206)
T d2fz4a1 136 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLP---AESYVQIAQMS---- 193 (206)
T ss_dssp GGEEEESSSCBC------------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCC---TTTHHHHHHTC----
T ss_pred CCHHHCCCCCCC------------CCCCCCCEEHHHHHHHHH---HCCCCCEEEEECCEECC---CHHHHHHHHCC----
T ss_conf 111101465321------------021001232255553676---57757799998982178---37999998506----
Q ss_pred CCCCCEEEEEECCC
Q ss_conf 89998899981345
Q 000380 211 IMKVPRIFGMTASP 224 (1601)
Q Consensus 211 ~~~~p~ilgLTATP 224 (1601)
+.+++||||||+
T Consensus 194 --~~~~~lgLTATl 205 (206)
T d2fz4a1 194 --IAPFRLGLTATF 205 (206)
T ss_dssp --CCSEEEEEEESC
T ss_pred --CCCCEEEEECCC
T ss_conf --898489995589
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=3.3e-24 Score=165.27 Aligned_cols=125 Identities=26% Similarity=0.446 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
..|+..|.++|+.. ...++||||+++.+++.++..|...+. . +..+|+ +++.++|..+++.|+.|+.
T Consensus 17 ~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~g~----~---~~~~h~---~~~~~~r~~~~~~f~~~~~ 83 (171)
T d1s2ma2 17 RQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGY----S---CYYSHA---RMKQQERNKVFHEFRQGKV 83 (171)
T ss_dssp GGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTC----C---EEEECT---TSCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEEEHHHHHHHHHHCCCC----C---CCCCCC---CCCHHHHHHHHHHCCCCCC
T ss_conf 99999999999848---987659997224135676776501334----4---333433---3211456655321136863
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEE-EEECCCHHH
Q ss_conf 2999805543585688866799707998998999986047-899970999-992798768
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDSGNQRE 543 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi-lv~~~~~~~ 543 (1601)
++||||+++++|+|+|.|++||+||+|+++.+|+||.||+ |.|+.|.++ |+..++...
T Consensus 84 ~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~ 143 (171)
T d1s2ma2 84 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 143 (171)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHH
T ss_conf 110120176541046624899964876027778777553141799617999857899999
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=2.6e-24 Score=165.92 Aligned_cols=128 Identities=20% Similarity=0.449 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
.+|+..|.++|.. .+.++||||+++.+++.++..|+..+. . ...+|+ +++..+|..++++|+.|+.
T Consensus 14 ~~K~~~L~~ll~~----~~~k~IIF~~s~~~~~~l~~~L~~~g~----~---~~~~~~---~~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 14 NERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDIGF----K---AGAIHG---DLSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp GGHHHHHHHHHCS----TTCCEEEECSSHHHHHHHHHHHHHTTC----C---EEEECS---SSCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHCC----CCCCEEEEECCHHHHHHHHHHHCCCCC----C---CCCCCC---CCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999726----999899997944899888765233432----2---223333---1001134566655412111
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEE-EEECCCHHHHHHH
Q ss_conf 2999805543585688866799707998998999986047-899970999-9927987689999
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDSGNQRELDLI 547 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi-lv~~~~~~~~~~~ 547 (1601)
++||||+++++|||+|.|++||+||+|+++.+|+||.||+ |.|+.|.++ ++.+.+......+
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i 143 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYI 143 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHH
T ss_pred EEEEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 2553036776543221276799964999999999887763747997369999866899999999
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.1e-24 Score=166.53 Aligned_cols=127 Identities=24% Similarity=0.455 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
..|+..|.+++... ...++||||+++.+++.++..|...+. . +..+|+ ++++++|..+++.|+.|+.
T Consensus 12 e~K~~~L~~ll~~~---~~~k~iIF~~s~~~~~~l~~~L~~~~~----~---~~~~~~---~~~~~~r~~~l~~f~~~~~ 78 (162)
T d1fuka_ 12 EYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKF----T---VSAIYS---DLPQQERDTIMKEFRSGSS 78 (162)
T ss_dssp GGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTC----C---EEEECT---TSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEECHHHHHHHHHHHCCC----E---EEEECC---CCCHHHHHHHHHHHHHCCC
T ss_conf 78999999999848---988589999887069999988865495----5---999516---7752367789998764036
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEE-EEECCCHHHHH
Q ss_conf 2999805543585688866799707998998999986047-899970999-99279876899
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDSGNQRELD 545 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi-lv~~~~~~~~~ 545 (1601)
++||||+++++|+|+|++++||+||+|+++..|+||.||+ |.|+.|.++ |+..++.....
T Consensus 79 ~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~ 140 (162)
T d1fuka_ 79 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 140 (162)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHH
T ss_pred CEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 45651562344655777508999345146778876501445479864799981799999999
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.8e-24 Score=164.93 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC---CCC
Q ss_conf 2204999999999850-698999469606999999999999999618999589999178657999999999870---981
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~---~l~ 132 (1601)
..|.+.|..+++.+++ +|+++.++||||||++|++|+ +.++.....+.++++++||++|+.|.++.+++.. +++
T Consensus 38 ~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPi--l~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~ 115 (222)
T d2j0sa1 38 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV--LQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 115 (222)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH--HHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCC--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999999879986997574341454404540--1100333467425775552888899999999984756345
Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99984798767743218863036709998499999988216668651529999657644334897499999987299989
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~ 212 (1601)
+..+.|+........... .+++|+|+||+++.+.+.++.+.++++.++|+||||.+.+.+. ..-+...+....
T Consensus 116 ~~~~~g~~~~~~~~~~l~---~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f---~~~i~~I~~~l~- 188 (222)
T d2j0sa1 116 CHACIGGTNVGEDIRKLD---YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGF---KEQIYDVYRYLP- 188 (222)
T ss_dssp EEEECTTSCHHHHHHHHH---HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTT---HHHHHHHHTTSC-
T ss_pred EEEEEECCCCHHHHHHHC---CCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECCHHHHHHCCC---HHHHHHHHHHCC-
T ss_conf 888751121024678751---4873886798757761200103444230355422467652573---999999999689-
Q ss_pred CCCEEEEEECCC
Q ss_conf 998899981345
Q 000380 213 KVPRIFGMTASP 224 (1601)
Q Consensus 213 ~~p~ilgLTATP 224 (1601)
+..+++.+|||.
T Consensus 189 ~~~Q~ilfSAT~ 200 (222)
T d2j0sa1 189 PATQVVLISATL 200 (222)
T ss_dssp TTCEEEEEESCC
T ss_pred CCCEEEEEEEEC
T ss_conf 888799999728
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.8e-24 Score=163.74 Aligned_cols=125 Identities=26% Similarity=0.447 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
..|+..|.+++... .+.++||||+++.+++.++..|...+. . ...+|+ +++.++|..++++|++|+.
T Consensus 19 ~~K~~~L~~ll~~~---~~~k~iiF~~~~~~~~~~~~~l~~~~~----~---~~~~~~---~~~~~~r~~~~~~fk~g~~ 85 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANF----T---VSSMHG---DMPQKERESIMKEFRSGAS 85 (168)
T ss_dssp THHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTC----C---CEEECT---TSCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEHHHHHHHHHHHHHCCC----C---HHHHHH---HHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999847---877639996058887888877663044----3---133311---2257899999999863884
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEE-EEECCCHHH
Q ss_conf 2999805543585688866799707998998999986047-899970999-992798768
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDSGNQRE 543 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi-lv~~~~~~~ 543 (1601)
++||||+++++|||+|++++||+||+|++..+|+||.||+ |.|+.|.++ ++..++...
T Consensus 86 ~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~ 145 (168)
T d2j0sa2 86 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 145 (168)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred CEEECCCHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHH
T ss_conf 077414410056553576568993377678788766104452699747999977899999
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.6e-23 Score=158.77 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
..|+..|.++|... .+.++||||+++..++.|+..|...+. . +..+|+ +++.++|..+++.|++|++
T Consensus 15 ~~k~~~L~~~l~~~---~~~~~IIF~~t~~~~~~l~~~l~~~~~----~---~~~~h~---~~~~~~r~~~~~~f~~g~~ 81 (200)
T d1oywa3 15 FKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQSKGI----S---AAAYHA---GLENNVRADVQEKFQRDDL 81 (200)
T ss_dssp SSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTC----C---EEEECT---TSCHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHC---CCCCEEEEEEEEHHHHHHHHHHCCCCC----E---EEEECC---CCCHHHHHHHHHHHHCCCC
T ss_conf 76899999999856---999889998223116776443244785----3---577538---8717778999988741343
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEE
Q ss_conf 2999805543585688866799707998998999986047-899970999992
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVD 537 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~ 537 (1601)
++||||+++++|||+|++++||+||+|.++.+|+||.||| |.|+.|.++++-
T Consensus 82 ~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~ 134 (200)
T d1oywa3 82 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134 (200)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred EEEEECCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 07874023453168878889998777511688988754531377772587751
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=2.1e-23 Score=160.23 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC---CCC
Q ss_conf 204999999999850--698999469606999999999999999618999589999178657999999999870---981
Q 000380 58 IARKYQLELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFK 132 (1601)
Q Consensus 58 ~~R~yQ~e~~~~al~--~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~---~l~ 132 (1601)
.|.+.|.++++.+++ .|+|+.+|||+|||+++.+++.+ ......+.++++++||++|+.|+.+.++... +.+
T Consensus 26 ~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~---~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~ 102 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE---LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 102 (208)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH---HSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCEEECCCCC---CCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEE
T ss_conf 9999999999999849997464410034444002033321---1112467506998403332203345566650367707
Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99984798767743218863036709998499999988216668651529999657644334897499999987299989
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~ 212 (1601)
+..++|+.....+... +.+++|+|+||+.|++.+.++.+.+++++++|+||||++.+. ..+..+.+.+... .
T Consensus 103 v~~~~g~~~~~~~~~~----l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~--~~~~~i~~I~~~~--~ 174 (208)
T d1hv8a1 103 IAKIYGGKAIYPQIKA----LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM--GFIKDVEKILNAC--N 174 (208)
T ss_dssp EEEECTTSCHHHHHHH----HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT--TTHHHHHHHHHTS--C
T ss_pred EEEEECCCCHHHHHHH----CCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCC--CCHHHHHHHHHHC--C
T ss_conf 9985289786999986----089999998869999999769977666869999884876108--8717799999858--9
Q ss_pred CCCEEEEEECCC
Q ss_conf 998899981345
Q 000380 213 KVPRIFGMTASP 224 (1601)
Q Consensus 213 ~~p~ilgLTATP 224 (1601)
+..+++++|||.
T Consensus 175 ~~~Q~i~~SAT~ 186 (208)
T d1hv8a1 175 KDKRILLFSATM 186 (208)
T ss_dssp SSCEEEEECSSC
T ss_pred CCCEEEEEECCC
T ss_conf 988599997027
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-23 Score=160.91 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC----C
Q ss_conf 12204999999999850-698999469606999999999999999618999589999178657999999999870----9
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI----G 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~----~ 130 (1601)
...|++.|.++++.+++ +|+++.+|||+|||++|++|+ +.+......+..+++++||++|+.|.++.+.... +
T Consensus 23 ~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~--l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL--LERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHH--HHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCH--HHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999869988744367400112124641--320210256752499840301668999999987511567
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHHHHHCCC
Q ss_conf 81999847987677432188630367099984999999882166686515299996576443348974-99999987299
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKP 209 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~-y~~Im~~~~~~ 209 (1601)
..+....|+....... ...-.+++|+|+||+++.+.+..+.+.++++.++|+||||.+.+.+... ...|+..+
T Consensus 101 ~~~~~~~g~~~~~~~~---~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~--- 174 (206)
T d1veca_ 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL--- 174 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS---
T ss_pred CCCCCCCCCCCHHHHH---HHHHHCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHC---
T ss_conf 6421236774088899---9887516708947963311233110001554069984142001122299999999868---
Q ss_pred CCCCCCEEEEEECCC
Q ss_conf 989998899981345
Q 000380 210 DIMKVPRIFGMTASP 224 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP 224 (1601)
.+..+++.+|||.
T Consensus 175 --~~~~Q~~l~SAT~ 187 (206)
T d1veca_ 175 --PKNRQILLYSATF 187 (206)
T ss_dssp --CTTCEEEEEESCC
T ss_pred --CCCCEEEEEEECC
T ss_conf --9988799999449
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.1e-23 Score=159.18 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC---CCC
Q ss_conf 2204999999999850-698999469606999999999999999618999589999178657999999999870---981
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~---~l~ 132 (1601)
..|.+.|..+++.++. +|+++.++||+|||++|++++ +.++.....+.++++++||++|+.|.++.++.+. ++.
T Consensus 33 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~--l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~ 110 (218)
T d2g9na1 33 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI--LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS 110 (218)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHH--HHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH--HHEECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999999769988997256254455433102--2200036667518998245112356777776512443216
Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHHHHHCCCCC
Q ss_conf 999847987677432188630367099984999999882166686515299996576443348974-9999998729998
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~-y~~Im~~~~~~~~ 211 (1601)
+..+.|+.........+. ...++|+|+||+++.+.+..+...++++.++|+||||.+.+.+... ...|++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~--~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~----- 183 (218)
T d2g9na1 111 CHACIGGTNVRAEVQKLQ--MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL----- 183 (218)
T ss_dssp EEEECC--CCCSTTTSSS--SCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----
T ss_pred EEEEECCCCHHHHHHHHH--CCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHC-----
T ss_conf 876302453067788876--4887799967815777886288324653489864021021276089999999968-----
Q ss_pred CCCCEEEEEECCC
Q ss_conf 9998899981345
Q 000380 212 MKVPRIFGMTASP 224 (1601)
Q Consensus 212 ~~~p~ilgLTATP 224 (1601)
....+++.+|||.
T Consensus 184 ~~~~Q~il~SAT~ 196 (218)
T d2g9na1 184 NSNTQVVLLSATM 196 (218)
T ss_dssp CTTCEEEEEESCC
T ss_pred CCCCEEEEEEECC
T ss_conf 9998699998059
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3e-23 Score=159.28 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC----
Q ss_conf 12204999999999850-6989994696069999999999999996189995899991786579999999998709----
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG---- 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~---- 130 (1601)
...|.+.|.++++.+++ +|+++.+|||+|||++|++|+ +.+......+.++++++||++|+.|..+.++....
T Consensus 21 ~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~--l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 21 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT--LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH--HHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCE--EEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999849985777223332120013440--321024677862899851220367899999999843887
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 81999847987677432188630367099984999999882166686515299996576443348974999999872999
Q 000380 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210 (1601)
Q Consensus 131 l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~ 210 (1601)
+++..+.|+...........+ ..++|+|+||+++.+.+..+.+.++++.++|+||||.+.+ ...+...+.......
T Consensus 99 ~~~~~~~g~~~~~~~~~~l~~--~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~--~~~~~~~i~~I~~~~ 174 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDEEVLKK--NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE--QLDMRRDVQEIFRMT 174 (207)
T ss_dssp CCEEEESCCSCHHHHHHHHHH--SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS--SHHHHHHHHHHHHTS
T ss_pred CEEEEEECCCCHHHHHHHHHH--CCCCEEEECCCHHHHHCCCCCEECCCCCEEEHHHHHHHHH--CCCCHHHHHHHHHHC
T ss_conf 516788456548899999873--6899899085464320258825543030340234444541--378599999999748
Q ss_pred CCCCCEEEEEECCCC
Q ss_conf 899988999813456
Q 000380 211 IMKVPRIFGMTASPV 225 (1601)
Q Consensus 211 ~~~~p~ilgLTATP~ 225 (1601)
. +..+++.+|||..
T Consensus 175 ~-~~~Q~il~SAT~~ 188 (207)
T d1t6na_ 175 P-HEKQVMMFSATLS 188 (207)
T ss_dssp C-SSSEEEEEESCCC
T ss_pred C-CCCEEEEEEEECC
T ss_conf 8-9887999940088
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=1.8e-23 Score=160.62 Aligned_cols=171 Identities=16% Similarity=0.268 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC--CCE
Q ss_conf 2204999999999850-6989994696069999999999999996189995899991786579999999998709--819
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKV 133 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~--l~v 133 (1601)
..+++||.++++.+++ +|+|+++|||+|||.+|.+++.. ... .++++++++|+++|+.|+.+.++++.+ .++
T Consensus 24 ~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~--~~~---~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~v 98 (202)
T d2p6ra3 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVR--EAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLRI 98 (202)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHH--HHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCE
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH--HHH---CCCCCEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999984999899868998511789999998--762---25760331662789999999999986324431
Q ss_pred EEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHHHHHCCCCCC
Q ss_conf 99847987677432188630367099984999999882166686515299996576443348974-99999987299989
Q 000380 134 RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPDIM 212 (1601)
Q Consensus 134 ~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~-y~~Im~~~~~~~~~ 212 (1601)
....|+...... .....+|+++||+.+...+.+....+..++++|+||||++...+... +..++..+... .
T Consensus 99 ~~~~~~~~~~~~------~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~--~ 170 (202)
T d2p6ra3 99 GISTGDYESRDE------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM--N 170 (202)
T ss_dssp EEECSSCBCCSS------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--C
T ss_pred EEECCCCCCCCC------CCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHC--C
T ss_conf 000267433221------22322125401089988875110011032222465877753554313799999999865--9
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99889998134568998763566589999999850581992
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS 253 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~~~~ 253 (1601)
+..++++||||.. +.+++.+.|++.++.
T Consensus 171 ~~~~~l~lSATl~-------------n~~~~~~~l~~~~~~ 198 (202)
T d2p6ra3 171 KALRVIGLSATAP-------------NVTEIAEWLDADYYV 198 (202)
T ss_dssp TTCEEEEEECCCT-------------THHHHHHHTTCEEEE
T ss_pred CCCCEEEECCCCC-------------CHHHHHHHCCCCEEE
T ss_conf 9983899817887-------------599999870898211
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.90 E-value=6e-23 Score=157.36 Aligned_cols=163 Identities=21% Similarity=0.252 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCC---------CCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 12204999999999850-698999469606999999999999999618---------99958999917865799999999
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRK---------PQKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~---------~~~k~vlvLvPt~~Lv~Qq~~~l 125 (1601)
...|.+.|.++++.+++ +|+++.+|||+|||++|++++ +.++... ..+.++++|+||++|+.|+.+.+
T Consensus 41 ~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~--l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~ 118 (238)
T d1wrba1 41 YQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI--INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 118 (238)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH--HHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEHHHH--HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCHHEEE
T ss_conf 998989999983664279978998777777511319999--999972221112456777836999535144301001011
Q ss_pred HHH---CCCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH-HHH
Q ss_conf 987---0981999847987677432188630367099984999999882166686515299996576443348974-999
Q 000380 126 EES---IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAK 201 (1601)
Q Consensus 126 ~~~---~~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~-y~~ 201 (1601)
... .++++..++|+...... ......+++|+|+||+.|.+.+..+.+.+.++.++|+||||++...+..+ ...
T Consensus 119 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~ 195 (238)
T d1wrba1 119 QKFSLNTPLRSCVVYGGADTHSQ---IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 195 (238)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHH---HHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred EECCCCCCCEEEEEECCCHHHHH---HHHCCCCCCEEECCHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHHCCHHHHHH
T ss_conf 10035788279999445203577---764036873440677887767726926526641244203445543213999999
Q ss_pred HHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 99987299989998899981345
Q 000380 202 IMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 202 Im~~~~~~~~~~~p~ilgLTATP 224 (1601)
|++...... ...++++.+|||.
T Consensus 196 Il~~~~~~~-~~~~Q~il~SAT~ 217 (238)
T d1wrba1 196 IIEESNMPS-GINRQTLMFSATF 217 (238)
T ss_dssp HHHSSCCCC-GGGCEEEEEESSC
T ss_pred HHHHHCCCC-CCCCEEEEEEEEC
T ss_conf 999843899-8998899996327
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.90 E-value=1.2e-22 Score=155.58 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 89999999953135898049999332416999999999500011343114772047877689999999999872499329
Q 000380 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNL 487 (1601)
Q Consensus 408 K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~~i 487 (1601)
++..|+..+... ...+.++||||+++..++.++..|+..+. + +..+|+ +|++.+|..++++|++|++++
T Consensus 16 qvd~ll~~i~~~-~~~~~~~iif~~~~~~~~~~~~~l~~~g~----~---~~~~hg---~~~~~eR~~~l~~Fr~g~~~v 84 (181)
T d1t5la2 16 QIDDLIGEIRER-VERNERTLVTTLTKKMAEDLTDYLKEAGI----K---VAYLHS---EIKTLERIEIIRDLRLGKYDV 84 (181)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHTTTC----C---EEEECS---SCCHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHHHHHH-HHCCCEEEEEEEHHHHHHHHHHHHHHCCC----C---EEEECC---CCCHHHHHHHHHHHHCCCCCE
T ss_conf 499999999999-96298289996103466788887876794----0---467417---863889999999997899888
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHHCC-CCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 99805543585688866799707998-----998999986047-89997099999279876899999
Q 000380 488 LVATKVGEEGLDIQTCCLVIRFDLPE-----TVASFIQSRGRA-RMPQSEYAFLVDSGNQRELDLIK 548 (1601)
Q Consensus 488 LVaT~vleeGIDip~~~~VI~fd~p~-----s~~~yiQr~GRA-R~g~s~~vilv~~~~~~~~~~~~ 548 (1601)
||||+++++|||+|+|++||+||+|. ++.+|+||.||| |.|....+++...........+.
T Consensus 85 LVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~~~~~~~~~~~i~ 151 (181)
T d1t5la2 85 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQ 151 (181)
T ss_dssp EEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHH
T ss_pred EEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 9762477713899997889995699645543589999998762456674567402114589999999
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.2e-22 Score=155.57 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC---CC
Q ss_conf 12204999999999850-698999469606999999999999999618999589999178657999999999870---98
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GF 131 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~---~l 131 (1601)
...|.+.|.++++.++. +|+++.+|||+|||+++++++ +.++.....+..+++++||++|+.|....+.... ..
T Consensus 30 ~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~--i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 107 (212)
T d1qdea_ 30 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA--LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 107 (212)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH--HHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH--HHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999999869987744565301004667666--766503677861489704488866666540012223321
Q ss_pred CEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHHHHHCCCC
Q ss_conf 1999847987677432188630367099984999999882166686515299996576443348974-999999872999
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDFYKPD 210 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~-y~~Im~~~~~~~ 210 (1601)
.+....|+.....+.. ...+++|+|+||+.+.+.+..+.+.+++++++|+||||.+.+.+... ...|++.+
T Consensus 108 ~~~~~~~~~~~~~~~~----~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~---- 179 (212)
T d1qdea_ 108 KVHACIGGTSFVEDAE----GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL---- 179 (212)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS----
T ss_pred CEEEEEECCCHHHHHH----HHCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEHHHHHHCCCCHHHHHHHHHHHC----
T ss_conf 1136753266167999----84699199979975522234673536864077530244531444399999999858----
Q ss_pred CCCCCEEEEEECCC
Q ss_conf 89998899981345
Q 000380 211 IMKVPRIFGMTASP 224 (1601)
Q Consensus 211 ~~~~p~ilgLTATP 224 (1601)
....+++++|||.
T Consensus 180 -~~~~Q~vl~SAT~ 192 (212)
T d1qdea_ 180 -PPTTQVVLLSATM 192 (212)
T ss_dssp -CTTCEEEEEESSC
T ss_pred -CCCCEEEEEEEEC
T ss_conf -9888699998618
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-22 Score=155.66 Aligned_cols=120 Identities=23% Similarity=0.435 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
+.|...|.++|... ...++||||+++.+++.|+..|...+. . +..+|+ +|+.++|..++++|++|++
T Consensus 12 ~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l~~~L~~~~~----~---~~~ihg---~~~~~~r~~~l~~F~~g~~ 78 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNF----P---AIAIHR---GMPQEERLSRYQQFKDFQR 78 (168)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTC----C---EEEECT---TSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHC---CCCEEEEEEEEEECCHHHHHHHCCCCC----C---CCCCCC---CCCHHHHHHHHHHHCCCCC
T ss_conf 99999999999838---998199998034411013334301244----4---321112---2210222211221112221
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEE-EEEC
Q ss_conf 2999805543585688866799707998998999986047-899970999-9927
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDS 538 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi-lv~~ 538 (1601)
++||||+++++|+|+|.|++||+||+|+++.+|+||.||+ |.|+.+.++ |+..
T Consensus 79 ~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~ 133 (168)
T d1t5ia_ 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 133 (168)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred EEEECCCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 1441233011001204413443221132214576542231528985189999884
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.8e-23 Score=157.96 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 12204999999999850-69899946960699999999999999961899958999917865799999999987098199
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVR 134 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~ 134 (1601)
...+|+||.++++.+++ +|+++++|||+|||++|.+++.. ..+++++++|+++|+.|+.+.++... ....
T Consensus 23 ~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~--------~~~~~~~v~P~~~L~~q~~~~l~~~~-~~~~ 93 (206)
T d1oywa2 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL--------LNGLTVVVSPLISLMKDQVDQLQANG-VAAA 93 (206)
T ss_dssp CSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH--------SSSEEEEECSCHHHHHHHHHHHHHTT-CCEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH--------CCCCEEEECCCHHHHHHHHHHHHHHC-CCCC
T ss_conf 99999899999999986998899867889975231202554--------26724786264066666899997635-6653
Q ss_pred EEECCCCCCCCHHHHHHH-HCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH---HHH---HHHHHC
Q ss_conf 984798767743218863-0367099984999999882166686515299996576443348974---999---999872
Q 000380 135 TFCGGSKRLKSHCDWEKE-IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP---YAK---IMKDFY 207 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~w~~~-~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~---y~~---Im~~~~ 207 (1601)
...+..........+... ....+|+++|++.+.....+.......++++|+||||++..++.+. |.. ++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~- 172 (206)
T d1oywa2 94 CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF- 172 (206)
T ss_dssp EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEEECHHHHCHHHCCCCHHHEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHC-
T ss_conf 2211112452056778876288469997030110001024221002224300012565022665089999999999758-
Q ss_pred CCCCCCCCEEEEEECCC
Q ss_conf 99989998899981345
Q 000380 208 KPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 208 ~~~~~~~p~ilgLTATP 224 (1601)
+..+++|||||+
T Consensus 173 -----~~~~ii~lSATl 184 (206)
T d1oywa2 173 -----PTLPFMALTATA 184 (206)
T ss_dssp -----TTSCEEEEESCC
T ss_pred -----CCCCEEEEEECC
T ss_conf -----998359999489
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=2.1e-22 Score=153.96 Aligned_cols=160 Identities=17% Similarity=0.240 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC---CCC
Q ss_conf 2204999999999850-698999469606999999999999999618999589999178657999999999870---981
Q 000380 57 QIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI---GFK 132 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~---~l~ 132 (1601)
..|+++|.++++.+++ +|+++.+|||+|||+++++++..+ .. .+++++|++|+++|+.||++.++++. +++
T Consensus 42 ~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~--~~---~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 42 GEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL--AL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp CSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHH--HT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH--HH---HCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99989999999999779977999268976999999999999--87---45838999444999999999999999984994
Q ss_pred ----EEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH--
Q ss_conf ----99984798767743218863036709998499999988216668651529999657644334897499999987--
Q 000380 133 ----VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF-- 206 (1601)
Q Consensus 133 ----v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~-- 206 (1601)
+..+.++.... ....+.....+++|+|+||+.+.+. ...+.+++++|+||||++.. .......+....
T Consensus 117 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d~~l~-~~~~~~~~~~~~g~ 190 (237)
T d1gkub1 117 TENLIGYYHGRIPKR-EKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVDAILK-ASKNVDKLLHLLGF 190 (237)
T ss_dssp GGGSEEECCSSCCSH-HHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHHHHHT-STHHHHHHHHHTTE
T ss_pred EEEEEEEEECCCCHH-HHHHHHCCCCCCCEECCCHHHHHHH----HHHCCCCCEEEEECHHHHHH-CCCCHHHHHHHCCC
T ss_conf 699985542254123-5655540344442322686999975----44347788899999266643-34214578886187
Q ss_pred CCC---C---CCCCCEEEEEECCCCCC
Q ss_conf 299---9---89998899981345689
Q 000380 207 YKP---D---IMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 207 ~~~---~---~~~~p~ilgLTATP~~~ 227 (1601)
... . ....++++++|||+..+
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 191 HYDLKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSCCC
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 399999986278888599990789945
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=2.7e-21 Score=146.96 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 89999999953135898049999332416999999999500011343114772047877689999999999872499329
Q 000380 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNL 487 (1601)
Q Consensus 408 K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~~i 487 (1601)
.+..|++.+.+. ...+.++||||.++.+++.++..|...+. + ...+|| +|++.+|.+++++|++|++.|
T Consensus 16 qv~dll~~i~~~-~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi----~---a~~~Hg---~~~~~eR~~~l~~F~~G~~~v 84 (174)
T d1c4oa2 16 QILDLMEGIRER-AARGERTLVTVLTVRMAEELTSFLVEHGI----R---ARYLHH---ELDAFKRQALIRDLRLGHYDC 84 (174)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHHTTC----C---EEEECT---TCCHHHHHHHHHHHHTTSCSE
T ss_pred CHHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHCCC----C---EEEEEC---CCCHHHHHHHHHHHHCCCEEE
T ss_conf 899999999999-86598389998230379999999986597----2---589861---554188999999997798699
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHHCC-CCCCCEEEEEEECCCHH
Q ss_conf 99805543585688866799707998-----998999986047-89997099999279876
Q 000380 488 LVATKVGEEGLDIQTCCLVIRFDLPE-----TVASFIQSRGRA-RMPQSEYAFLVDSGNQR 542 (1601)
Q Consensus 488 LVaT~vleeGIDip~~~~VI~fd~p~-----s~~~yiQr~GRA-R~g~s~~vilv~~~~~~ 542 (1601)
||||+++++|||+|++++||+||.|. +..+|+|+.||| |.++...+++.......
T Consensus 85 LVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~~~~~ 145 (174)
T d1c4oa2 85 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEA 145 (174)
T ss_dssp EEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHH
T ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 9963564211367777389980365445530167799886144304787068962677789
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.6e-21 Score=145.02 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH---CCC
Q ss_conf 12204999999999850-69899946960699999999999999961899958999917865799999999987---098
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES---IGF 131 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~---~~l 131 (1601)
...|.+.|.++++.+++ +|+|+.+|||+|||++|++++ +.+......+.++++++|+..++.|........ .++
T Consensus 21 ~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 21 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT--LEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH--HHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC--CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 999999999999999869988986587621444430331--100232223443203235112113354433320444670
Q ss_pred CEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 19998479876774321886303670999849999998821666865152999965764433489749999998729998
Q 000380 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 132 ~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~ 211 (1601)
++...+|+......... .-.+++|+|+||+.+.+.+....+.+++++++|+||||++.+ ..|...+........
T Consensus 99 ~~~~~~g~~~~~~~~~~---l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~---~~f~~~v~~I~~~l~ 172 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDILR---LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS---RDFKTIIEQILSFLP 172 (206)
T ss_dssp CEEEECSSSCHHHHHHH---TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS---HHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCHHHHHHH---HCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEECHHHHHH---HHHHHHHHHHHHHCC
T ss_conf 68852376301467777---525654999897533333432101012220777622134430---024779999998689
Q ss_pred CCCCEEEEEECCC
Q ss_conf 9998899981345
Q 000380 212 MKVPRIFGMTASP 224 (1601)
Q Consensus 212 ~~~p~ilgLTATP 224 (1601)
+..+++.+|||.
T Consensus 173 -~~~Q~il~SATl 184 (206)
T d1s2ma1 173 -PTHQSLLFSATF 184 (206)
T ss_dssp -SSCEEEEEESCC
T ss_pred -CCCEEEEEEEEC
T ss_conf -888899998738
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.84 E-value=2.2e-20 Score=141.28 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC-----
Q ss_conf 12204999999999850-698999469606999999999999999618999589999178657999999999870-----
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI----- 129 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~----- 129 (1601)
...|++.|.++++.+++ +|+++.+|||||||++|++++ +............++++|+..++.|.+..+....
T Consensus 21 ~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1q0ua_ 21 FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPI--MEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 98 (209)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHH--HHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEE--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999879976866244421331444310--012454444444222233332147788888764122333
Q ss_pred --CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHHHHH
Q ss_conf --981999847987677432188630367099984999999882166686515299996576443348974-99999987
Q 000380 130 --GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHP-YAKIMKDF 206 (1601)
Q Consensus 130 --~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~-y~~Im~~~ 206 (1601)
...+....|+.+..+..... -.+++|+|+||+.+.+.+.+....++++.++|+||||++.+.+... ...|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~ 175 (209)
T d1q0ua_ 99 DRMIVARCLIGGTDKQKALEKL---NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 175 (209)
T ss_dssp GGCCCEEEECCCSHHHHTTCCC---SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHH---CCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 4321100025620367788874---6675499834710122332101344553389996023011314099999999978
Q ss_pred CCCCCCCCCEEEEEECCC
Q ss_conf 299989998899981345
Q 000380 207 YKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP 224 (1601)
.+..+++++|||.
T Consensus 176 -----~~~~Q~il~SATl 188 (209)
T d1q0ua_ 176 -----PKDLQMLVFSATI 188 (209)
T ss_dssp -----CTTCEEEEEESCC
T ss_pred -----CCCCEEEEEECCC
T ss_conf -----9988799997219
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.83 E-value=3.3e-21 Score=146.41 Aligned_cols=119 Identities=19% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 88740121468999999999999749999920699999992094999999998494457730692013556431210037
Q 000380 1243 GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT 1322 (1601)
Q Consensus 1243 ~~yerLeflGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~ 1322 (1601)
.+.-.|||||||||+++|+.|||.++| .+||.||.+|+++|||.+||.++.++++++++.......... .+.
T Consensus 6 ~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~-------Grn 77 (127)
T d1u61a_ 6 LNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRR-------GRN 77 (127)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHH-------HTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCC-------CCC
T ss_conf 484778987899999999999997189-990179999999924999999999907677764033431016-------775
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 8984222479999841255899964412013898868999999995222
Q 000380 1323 PSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP 1371 (1601)
Q Consensus 1323 ~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~~~~~~~~~l~~ 1371 (1601)
.+...........++.+||+|||+|||||+|+|++ .+++++.+.++.
T Consensus 78 ~~~~~~~k~~~~~~y~lad~fEAliGalYLd~~~e--~~~~~i~~~~~~ 124 (127)
T d1u61a_ 78 ANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRE--RLDEIVYKAIAV 124 (127)
T ss_dssp CCSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHH
T ss_conf 54777776665147776059999999999918889--999999999988
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=9.8e-20 Score=137.22 Aligned_cols=151 Identities=20% Similarity=0.189 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHC-------CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC-
Q ss_conf 204999999999850-------698999469606999999999999999618999589999178657999999999870-
Q 000380 58 IARKYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~al~-------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~- 129 (1601)
.+.+-|..+++.+.+ .+.++..+||||||.+|+..+..... .++.+++++||..|+.|+++.+++++
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~-----~g~q~~~m~Pt~~La~Qh~~~~~~~f~ 157 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-----AGFQTAFMVPTSILAIQHYRRTVESFS 157 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-----HTSCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH-----CCCCEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 678037888999998762367531566635355665999999999885-----135505874047665789999988620
Q ss_pred --CCCEEEEECCCCCCCCHHHHHHHHCC-CEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf --98199984798767743218863036-709998499999988216668651529999657644334897499999987
Q 000380 130 --GFKVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 130 --~l~v~~~~G~~~~~~~~~~w~~~~~~-~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~ 206 (1601)
++.+..++|+.+..++...|...-.+ .+|+|+|...+. ..+.+.+++|+|+||-|+.+.+.+..
T Consensus 158 ~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv~Qr~~-------- 224 (264)
T d1gm5a3 158 KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGVKQREA-------- 224 (264)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC-----CC--------
T ss_pred HCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHC-----CCCCCCCCCEEEECCCCCCCHHHHHH--------
T ss_conf 12312111011013699999999997799799996538854-----89874556225632421002434799--------
Q ss_pred CCCCCCCCCEEEEEECCCCCC
Q ss_conf 299989998899981345689
Q 000380 207 YKPDIMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~ 227 (1601)
.......+.+|.|||||+.+
T Consensus 225 -l~~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 225 -LMNKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp -CCSSSSCCCEEEEESSCCCH
T ss_pred -HHHHCCCCCEEEEECCCCHH
T ss_conf -99718699989997988999
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=6.7e-19 Score=131.96 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHC-------CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC-
Q ss_conf 204999999999850-------698999469606999999999999999618999589999178657999999999870-
Q 000380 58 IARKYQLELCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI- 129 (1601)
Q Consensus 58 ~~R~yQ~e~~~~al~-------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~- 129 (1601)
.+.+-|..+++.+.+ .+.+++.+||||||.+|+..+.... ..++.+++|+||..|+.|.++.+++.+
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~-----~~g~qv~~l~Pt~~La~Q~~~~~~~~~~ 129 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-----DNHKQVAVLVPTTLLAQQHYDNFRDRFA 129 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-----TTTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 34604888999999998545766708983888772899999999999-----7689569974688767999999999872
Q ss_pred --CCCEEEEECCCCCCCCHHHHHHHHCC-CEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf --98199984798767743218863036-709998499999988216668651529999657644334897499999987
Q 000380 130 --GFKVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 130 --~l~v~~~~G~~~~~~~~~~w~~~~~~-~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~ 206 (1601)
+.++..++|......+...|.....+ .+|+|+|...+ ..++.+.+++|||+||-|+.+.+ ....++..
T Consensus 130 ~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l-----~~~~~f~~LgLiIiDEeH~fg~k----Q~~~l~~~ 200 (233)
T d2eyqa3 130 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRFGVR----HKERIKAM 200 (233)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGSCHH----HHHHHHHH
T ss_pred HCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHH-----CCCCCCCCCCCEEEECHHHHHHH----HHHHHHHH
T ss_conf 4797797635765312699999999679978897420233-----06776555463022231233257----89999961
Q ss_pred CCCCCCCCCEEEEEECCCCCC
Q ss_conf 299989998899981345689
Q 000380 207 YKPDIMKVPRIFGMTASPVVG 227 (1601)
Q Consensus 207 ~~~~~~~~p~ilgLTATP~~~ 227 (1601)
. ..+.++.|||||+.+
T Consensus 201 ~-----~~~~~l~~SATPipr 216 (233)
T d2eyqa3 201 R-----ANVDILTLTATPIPR 216 (233)
T ss_dssp H-----TTSEEEEEESSCCCH
T ss_pred C-----CCCCEEEEECCHHHH
T ss_conf 8-----899889996551099
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=5.7e-20 Score=138.69 Aligned_cols=117 Identities=24% Similarity=0.415 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
+.|+..|.+++... .+.++||||+++..++.|.+.|. ...+|| +++..+|+.+++.|++|++
T Consensus 78 ~~K~~~l~~ll~~~---~~~k~lvf~~~~~~~~~l~~~l~------------~~~i~g---~~~~~~R~~~l~~F~~~~~ 139 (200)
T d2fwra1 78 KNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFL------------IPAITH---RTSREEREEILEGFRTGRF 139 (200)
T ss_dssp SHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTT------------CCBCCS---SSCSHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHCC------------CCEEEC---CCCHHHHHHHHHHHHCCCE
T ss_conf 88999999999967---79807999475999999876338------------552557---9999999999988634870
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCE---EEE-EEECCC
Q ss_conf 2999805543585688866799707998998999986047-899970---999-992798
Q 000380 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE---YAF-LVDSGN 540 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~---~vi-lv~~~~ 540 (1601)
++||+|+++++|||+|.|++||.+|+|+|+..|+||.||+ |.++.+ +++ |+..+.
T Consensus 140 ~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 140 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred EEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
T ss_conf 354302102102579988889996799799999999874487999986799999952999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.79 E-value=4.7e-19 Score=132.94 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=92.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 69899946960699999999999999961899958999917865799999999987098199984798767743218863
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~ 152 (1601)
+..|+.+|||+|||.++...+. ..+.+++|++|++.|++||.+.+.+.++.......++.....
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~--------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA--------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITT-------- 72 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH--------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECC--------
T ss_pred CEEEEEECCCCCHHHHHHHHHH--------HCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--------
T ss_conf 8899996887799999999999--------869939997676999999999999985202464300122113--------
Q ss_pred HCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 036709998499999988216668651529999657644334897499999987299989998899981345
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 153 ~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~~~p~ilgLTATP 224 (1601)
...++++|++.+..... ..+.++++||+||||++.......+..+++.+.. ....+++||||||
T Consensus 73 --~~~~~~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~---~~~~~~l~~TATP 136 (136)
T d1a1va1 73 --GSPITYSTYGKFLADGG---CSGGAYDIIICDECHSTDATSILGIGTVLDQAET---AGARLVVLATATP 136 (136)
T ss_dssp --CCSEEEEEHHHHHHTTG---GGGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTT---TTCSEEEEEESSC
T ss_pred --CCCEEEEEEEEECCCCC---HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHH---CCCCCEEEEECCC
T ss_conf --44227886410002353---0241599999825553588789999999999987---7997299992799
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.79 E-value=3e-20 Score=140.43 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=91.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89974200001247878999999862899996332898866404299999999859843202367788864347997555
Q 000380 1036 RFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPR 1115 (1601)
Q Consensus 1036 ~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~ 1115 (1601)
..|...|||||||||+++++.|||..+| .+||.||..|+.+|||.+|++++.++++..|+.......-+|- +.
T Consensus 5 ~~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~G---rn--- 77 (127)
T d1u61a_ 5 QLNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRG---RN--- 77 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHH---TC---
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCC---CC---
T ss_conf 4484778987899999999999997189-9901799999999249999999999076777640334310167---75---
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6651111201023599999873100014777433221258899999740312456869999999982
Q 000380 1116 ICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWI 1182 (1601)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~g~~~a~~~~~~~ 1182 (1601)
. ..+.. ..+.....+.+||+|||||||+|+|+|++.+..++.+.
T Consensus 78 ---------~---~~~~~-----------~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~~ 121 (127)
T d1u61a_ 78 ---------A---NSGTV-----------PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 121 (127)
T ss_dssp ---------C---CSSCC-----------CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------C---CCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ---------5---47777-----------76665147776059999999999918889999999999
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.77 E-value=2.7e-18 Score=128.21 Aligned_cols=163 Identities=19% Similarity=0.225 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 2204999999999850----------69899946960699999999999999961--89995899991786579999999
Q 000380 57 QIARKYQLELCKKAME----------ENIIVYLGTGCGKTHIAVLLIYELAHLIR--KPQKSICIFLAPTVALVQQQAKV 124 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~----------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~--~~~~k~vlvLvPt~~Lv~Qq~~~ 124 (1601)
..+|+||.+++..+.+ .++|+++++|+|||++++.++..+..... .+..+++||+||. .|+.||.++
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~E 132 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHHH
T ss_conf 1020999999999999877354126874698747878899999999999998460116887737998050-455789998
Q ss_pred HHHHCC--CCEEEEECCCCCCCCH--HHHHHH---HCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 998709--8199984798767743--218863---036709998499999988216668651529999657644334897
Q 000380 125 IEESIG--FKVRTFCGGSKRLKSH--CDWEKE---IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNH 197 (1601)
Q Consensus 125 l~~~~~--l~v~~~~G~~~~~~~~--~~w~~~---~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~ 197 (1601)
+.++++ ..+..++|+....... ..|... ....+|+++|++.+..... .+...++++||+||||++.+.+ .
T Consensus 133 i~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~~~~~~~vI~DEaH~ikn~~-s 209 (298)
T d1z3ix2 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (298)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--CCCCCCEEEEECCCCCCCCCCC-C
T ss_conf 876357752599996862777888998765303766661399986123222200--0334211454114232201322-0
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 49999998729998999889998134568998
Q 000380 198 PYAKIMKDFYKPDIMKVPRIFGMTASPVVGKG 229 (1601)
Q Consensus 198 ~y~~Im~~~~~~~~~~~p~ilgLTATP~~~~~ 229 (1601)
.....+..+ +.++.++|||||+.++.
T Consensus 210 ~~~~a~~~l------~~~~rllLTGTPi~N~~ 235 (298)
T d1z3ix2 210 QTYLALNSM------NAQRRVLISGTPIQNDL 235 (298)
T ss_dssp HHHHHHHHH------CCSEEEEECSSCSGGGG
T ss_pred HHHHHHHCC------CCCEEEEECCHHHHHHH
T ss_conf 345644213------41125652260776666
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.77 E-value=2.6e-17 Score=121.97 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 78888999999995313589804999933241699999999950001134311477204787768999999999987249
Q 000380 404 FFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG 483 (1601)
Q Consensus 404 ~~s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g 483 (1601)
..|.|+..|.++|.......+.|+|||++.+.+...|...|...+. . ...++| .++..+|..+++.|+++
T Consensus 98 ~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~----~---~~~l~G---~~~~~~R~~~i~~F~~~ 167 (346)
T d1z3ix1 98 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRY----L---YVRLDG---TMSIKKRAKIVERFNNP 167 (346)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTC----C---EEEECS---SCCHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHC----C---CCCCCC---CHHHHHHHHHHHHHHCC
T ss_conf 0178999999999998875189516886301456799999763002----4---110111---00278899999865102
Q ss_pred CC---CEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEE--E-EEECCCHHH
Q ss_conf 93---2999805543585688866799707998998999986047-89997099--9-992798768
Q 000380 484 EL---NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYA--F-LVDSGNQRE 543 (1601)
Q Consensus 484 ~~---~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~v--i-lv~~~~~~~ 543 (1601)
.. -+|++|.++++|||++.++.||.||++||+..+.|+.||+ |.|+...| + ++..+..++
T Consensus 168 ~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe 234 (346)
T d1z3ix1 168 SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 234 (346)
T ss_dssp TCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred CCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHH
T ss_conf 3433025403314443356564307999457886155867633340348998438999873898999
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=1.7e-17 Score=123.09 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHC-----CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 12204999999999850-----6989994696069999999999999996189995899991786579999999998709
Q 000380 56 KQIARKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-----~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~ 130 (1601)
...+|+||.+++..+.. ..+|+++++|+|||++++..+..+ ......++++++||. .++.||.+++.++..
T Consensus 10 ~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~---~~~~~~~~~LIv~p~-~l~~~W~~e~~~~~~ 85 (230)
T d1z63a1 10 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA---KKENELTPSLVICPL-SVLKNWEEELSKFAP 85 (230)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH---HHTTCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCCCCCCCCEECCH-HHHHHHHHHHHHHCC
T ss_conf 0450699999999999862169987998589988699998735544---212355644110535-542677777776402
Q ss_pred -CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf -8199984798767743218863036709998499999988216668651529999657644334897499999987299
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKP 209 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~ 209 (1601)
..+..+.+...... + .+.+|+++|++.+.+... +.-..+.++|+||||++...+.. ....+..+
T Consensus 86 ~~~~~~~~~~~~~~~----~----~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~s~-~~~~~~~l--- 150 (230)
T d1z63a1 86 HLRFAVFHEDRSKIK----L----EDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTK-IFKAVKEL--- 150 (230)
T ss_dssp TSCEEECSSSTTSCC----G----GGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSH-HHHHHHTS---
T ss_pred CCCCEEECCCCCHHH----C----CCCCEEEEEHHHHHHHHH---HHCCCCEEEEEEHHHCCCCCCHH-HHHHHHHH---
T ss_conf 544101014210000----2----576889854999986888---74165139999710034432205-56665440---
Q ss_pred CCCCCCEEEEEECCCCCCC
Q ss_conf 9899988999813456899
Q 000380 210 DIMKVPRIFGMTASPVVGK 228 (1601)
Q Consensus 210 ~~~~~p~ilgLTATP~~~~ 228 (1601)
+..+.++|||||+.++
T Consensus 151 ---~a~~r~~LTgTPi~n~ 166 (230)
T d1z63a1 151 ---KSKYRIALTGTPIENK 166 (230)
T ss_dssp ---CEEEEEEECSSCSTTC
T ss_pred ---CCCEEEEEECCHHHHH
T ss_conf ---4655799725267767
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=2e-17 Score=122.73 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=90.5
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCC--C--C-------C-----------CCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 98049999332416999999999500011--3--4-------3-----------11477204787768999999999987
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLA--S--W-------R-----------CHFLVGVNAGLKSMSRNAMKSILEKF 480 (1601)
Q Consensus 423 ~~~~~IIFv~~r~~a~~L~~~L~~~~~~~--~--~-------~-----------~~~~vg~~~g~~~~~~~~r~~vl~~F 480 (1601)
++.++||||++|..|+.++..|....... . . . ...-+++|++ +|++.+|..+.+.|
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~--~l~~~~r~~ie~~f 116 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA--GLLNGQRRVVEDAF 116 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT--TSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHH
T ss_conf 6996899968999999999999998875302257899988751235569999998511788877--76256689999998
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCEEEE-------CCCCCCHHHHHHHHHCC-CCCC--CEEEEEEECCC
Q ss_conf 2499329998055435856888667997-------07998998999986047-8999--70999992798
Q 000380 481 RSGELNLLVATKVGEEGLDIQTCCLVIR-------FDLPETVASFIQSRGRA-RMPQ--SEYAFLVDSGN 540 (1601)
Q Consensus 481 r~g~~~iLVaT~vleeGIDip~~~~VI~-------fd~p~s~~~yiQr~GRA-R~g~--s~~vilv~~~~ 540 (1601)
++|.+++||||+++++|||+|..++||. ++.|.+..+|+|+.||| |.|. .|.++++....
T Consensus 117 ~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~ 186 (201)
T d2p6ra4 117 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 186 (201)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HCCCCEEEEECHHHHHHCCCCCCEEEEECCEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf 6798149970418875237997469995142046874779999999875446899999725999996898
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=2e-17 Score=122.70 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=75.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35995567535799999995799999125850469998741499999994159833887499874312899999999999
Q 000380 1513 TTGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLW 1592 (1601)
Q Consensus 1513 ~~~~~~~~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~ 1592 (1601)
.+++|...|||+.||||||+++.+ |.|++ .+.||+|.+.|+|+|.|.+...+..+...|.|.| ||.|+|.||+.||+
T Consensus 19 ~~g~wt~~n~Ks~LqE~~Qk~k~~-p~Y~i-~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~s-KK~AEq~AA~~~l~ 95 (113)
T d1uila_ 19 LHGNWTLENAKARLNQYFQKEKIQ-GEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSN-KKLAAQSCALSLVR 95 (113)
T ss_dssp HHCCCCHHHHHHHHHHHHHHSCCC-CCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEECCCSS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCC-CCEEE-EEECCCCCCEEEEEEEEEEECCCCEEEEECCCCH-HHHHHHHHHHHHHH
T ss_conf 358970147999999999867999-96598-5542688995999999942125976776406260-99999999999999
Q ss_pred HHHHCCCC
Q ss_conf 99761977
Q 000380 1593 CLEREGYL 1600 (1601)
Q Consensus 1593 ~L~~~~~~ 1600 (1601)
.|.+.|+|
T Consensus 96 ~L~~~g~i 103 (113)
T d1uila_ 96 QLYHLGVI 103 (113)
T ss_dssp HHHHHTSS
T ss_pred HHHHCCCC
T ss_conf 99974886
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.71 E-value=1.6e-17 Score=123.29 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=82.5
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 98049999332416999999999500011343114772047877689999999999872499329998055435856888
Q 000380 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQT 502 (1601)
Q Consensus 423 ~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~~iLVaT~vleeGIDip~ 502 (1601)
.+.++||||+++..|+.|+..|+..+.. ...+|++ ++. +.|++|+.++||||+++++||| |+
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~-------~~~~H~~---~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~ 95 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGIN-------AVAYYRG---LDV-------SVIPTNGDVVVVATDALMTGFT-GD 95 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCE-------EEEECTT---CCS-------CCCTTSSCEEEEESSSSCSSSC-CC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCC-------HHHHHCC---CHH-------HHHHHHHCCEEEHHHHHHHCCC-CC
T ss_conf 8998999909589999999998352632-------0334235---305-------4432331121410688870254-33
Q ss_pred CCEEEECC----CCCCHHHHHHHHHCC-CCCCCEEEEEEECCC
Q ss_conf 66799707----998998999986047-899970999992798
Q 000380 503 CCLVIRFD----LPETVASFIQSRGRA-RMPQSEYAFLVDSGN 540 (1601)
Q Consensus 503 ~~~VI~fd----~p~s~~~yiQr~GRA-R~g~s~~vilv~~~~ 540 (1601)
+++||++| +|.+..+|+||.||| | |+.|.+.++.+++
T Consensus 96 v~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g~~G~~~~i~~~e 137 (138)
T d1jr6a_ 96 FDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 137 (138)
T ss_dssp BSEEEECSEETTEECCHHHHHHHHTTBCS-SSCEEEEECCSSC
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHCCCCC-CCCCEEEEECCCC
T ss_conf 46177777647799999999868623048-9982899973799
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.71 E-value=1.2e-17 Score=124.14 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=87.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 69899946960699999999999999961899958999917865799999999987098199984798767743218863
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKE 152 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~ 152 (1601)
+++++.+|||+|||+++...+.. .... .++++++++|++.++.|+.+.+.. ..+....+.......
T Consensus 8 ~~~il~~~tGsGKT~~~~~~~~~--~~~~--~~~~vli~~p~~~l~~q~~~~~~~---~~~~~~~~~~~~~~~------- 73 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRFLPQILA--ECAR--RRLRTLVLAPTRVVLSEMKEAFHG---LDVKFHTQAFSAHGS------- 73 (140)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHH--HHHH--TTCCEEEEESSHHHHHHHHHHTTT---SCEEEESSCCCCCCC-------
T ss_pred CCEEEECCCCCCHHHHHHHHHHH--HHHH--CCCEEEEEECCHHHHHHHHHHHHH---HHHHHCCCCCCCCCC-------
T ss_conf 96799817998855999999999--7531--385156531210688999987532---432201120001223-------
Q ss_pred HCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 036709998499999988216668651529999657644334897499999987299989998899981345
Q 000380 153 IDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 153 ~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~~~p~ilgLTATP 224 (1601)
....+.++|...+..... ....+.+++++||||||++.... ......+..+.+. +..++++|||||
T Consensus 74 -~~~~~~~~~~~~l~~~~~-~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~~~~~~~~---~~~~~l~lTATP 139 (140)
T d1yksa1 74 -GREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLDPAS-IAARGWAAHRARA---NESATILMTATP 139 (140)
T ss_dssp -SSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCSHHH-HHHHHHHHHHHHT---TSCEEEEECSSC
T ss_pred -CCCCHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHHHC---CCCCEEEEECCC
T ss_conf -333002426999999984-16654642089975433467543-9999999998257---999989998299
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=2e-17 Score=122.69 Aligned_cols=136 Identities=20% Similarity=0.314 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH-----HHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88999999995313589804999933241699999-----9999500011343114772047877689999999999872
Q 000380 407 KKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALS-----YILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFR 481 (1601)
Q Consensus 407 ~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~-----~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr 481 (1601)
.+...+.+.+... ...+.++.+.|+.+...+.+. +....+ ...+.+++-++..+| +|++++++.++++|+
T Consensus 13 ~~~~~v~~~I~~e-l~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l--~~~~~p~~~v~~lHG--~m~~~eke~~m~~F~ 87 (206)
T d1gm5a4 13 DRVNEVYEFVRQE-VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYL--SKEVFPEFKLGLMHG--RLSQEEKDRVMLEFA 87 (206)
T ss_dssp STHHHHHHHHHHH-TTTSCCBCCBCCCC--------CHHHHHHHSG--GGSCC---CBCCCCS--SSCCSCSHHHHHHHT
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEEEEEECCCCCCCCHHHHHHHHHH--HHHCCCCCEEEEEEE--CCCHHHHHHHHHHHH
T ss_conf 4299999999999-97499889997514455321101367899999--985089972889860--365999999999997
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHCC-CCCCCEEEEEEECC-CHHHHHHH
Q ss_conf 49932999805543585688866799707998-998999986047-89997099999279-87689999
Q 000380 482 SGELNLLVATKVGEEGLDIQTCCLVIRFDLPE-TVASFIQSRGRA-RMPQSEYAFLVDSG-NQRELDLI 547 (1601)
Q Consensus 482 ~g~~~iLVaT~vleeGIDip~~~~VI~fd~p~-s~~~yiQr~GRA-R~g~s~~vilv~~~-~~~~~~~~ 547 (1601)
+|+++|||||+|+|.|||+|++++||.++.|. .+.++.|.+||+ |.+..++++++... +....+.+
T Consensus 88 ~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 88 EGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 156 (206)
T ss_dssp TTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCEEEEEEEHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHEEECCCCCEEEEEECCCCCCCHHHH
T ss_conf 798789997024310455267848999804886377887652021212125405765224322111344
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.68 E-value=5.2e-19 Score=132.63 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
..|+..|.++|..+ +.++||||+++.+++.++..|.. .+|+ ++++.+|.+++++|++|++
T Consensus 11 ~~~~~~l~~~l~~~----~~~~iif~~~~~~~~~l~~~l~~-------------~~hg---~~~~~~R~~~~~~f~~g~~ 70 (248)
T d1gkub2 11 DESISTLSSILEKL----GTGGIIYARTGEEAEEIYESLKN-------------KFRI---GIVTATKKGDYEKFVEGEI 70 (248)
T ss_dssp CCCTTTTHHHHTTS----CSCEEEEESSHHHHHHHHHTTTT-------------SSCE---EECTTSSSHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHH----CCCEEEEECCHHHHHHHHHHHHH-------------HCCC---CCCHHHHHHHHHHHHHCCC
T ss_conf 36899999999983----97989998987899999999987-------------3437---8999999999999982798
Q ss_pred CEEEEE----CCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEE
Q ss_conf 299980----55435856888-66799707998998999986047-899970999
Q 000380 486 NLLVAT----KVGEEGLDIQT-CCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF 534 (1601)
Q Consensus 486 ~iLVaT----~vleeGIDip~-~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi 534 (1601)
++|||| +++++|||+|. +++||+||+|+ |+|+.||+ |.|+.+..+
T Consensus 71 ~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~ 121 (248)
T d1gkub2 71 DHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKL 121 (248)
T ss_dssp SEEEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHH
T ss_pred EEEEEECCCCCHHHHCCCCCCCCCEEEEECCCC----CHHHHHHHHCCCCCEEEE
T ss_conf 599996666024651367665401899967974----000054563167451765
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.5e-15 Score=110.87 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=94.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 89804999933241699999999950001134311477204787768999999999987249932999805543585688
Q 000380 422 QQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQ 501 (1601)
Q Consensus 422 ~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~~iLVaT~vleeGIDip 501 (1601)
..+.++.+.|+.+...+.++..+++.. ++.-+++.+| .|+.++++.++.+|++|+++|||||.|.|.|||||
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~------p~~~i~~lHG--km~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvp 100 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELV------PEARIAIGHG--QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 100 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHC------TTSCEEECCS--SCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHHC------CCEEEEEEEE--CCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCC
T ss_conf 869959999717521266888888747------7337999972--26888899999999829862688755344046899
Q ss_pred CCCEEEECCCCC-CHHHHHHHHHCC-CCCCCEEEEEEECC
Q ss_conf 866799707998-998999986047-89997099999279
Q 000380 502 TCCLVIRFDLPE-TVASFIQSRGRA-RMPQSEYAFLVDSG 539 (1601)
Q Consensus 502 ~~~~VI~fd~p~-s~~~yiQr~GRA-R~g~s~~vilv~~~ 539 (1601)
+++++|..+... .+.++.|.+||. |.+..+||+|+...
T Consensus 101 nA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~ 140 (211)
T d2eyqa5 101 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 140 (211)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred CCCEEEEECCHHCCCCCCCCCCCEEEECCCCCEEEEEECC
T ss_conf 8769987130003311222302335536766548998568
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.3e-17 Score=119.16 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=69.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35995567535799999995799999125850469998741499999994159833887499874312899999999999
Q 000380 1513 TTGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLW 1592 (1601)
Q Consensus 1513 ~~~~~~~~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~ 1592 (1601)
+-+++.++|||+.||||||++++ .|.|.+++++||+|.+.|+|+|.|+ |..+. .|.|.| ||.||+.||+.||.
T Consensus 6 ~~~~~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~----~~~~~-~g~G~s-KK~Aeq~AA~~aL~ 78 (90)
T d1qu6a1 6 MAGDLSAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIID----GREFP-EGEGRS-KKEAKNAAAKLAVE 78 (90)
T ss_dssp SCCCSSSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESS----SSCCC-EEECCS-SHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCEEEEEEEEC----CEEEE-CCCCCC-HHHHHHHHHHHHHH
T ss_conf 22699977899999999998299-9857998710798874479999977----56640-567876-99999999999999
Q ss_pred HHHHCCC
Q ss_conf 9976197
Q 000380 1593 CLEREGY 1599 (1601)
Q Consensus 1593 ~L~~~~~ 1599 (1601)
.|+++..
T Consensus 79 ~L~~~~~ 85 (90)
T d1qu6a1 79 ILNKEKK 85 (90)
T ss_dssp HHHSCCS
T ss_pred HHHHHCC
T ss_conf 9983077
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.64 E-value=1e-16 Score=118.32 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=84.0
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHH----------HHHHHHHHCCCCCEEEEECC
Q ss_conf 80499993324169999999995000113431147720478776899999----------99999872499329998055
Q 000380 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAM----------KSILEKFRSGELNLLVATKV 493 (1601)
Q Consensus 424 ~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r----------~~vl~~Fr~g~~~iLVaT~v 493 (1601)
+.++||||++|..++.|+..|+..+.. ...+|++ ++++.| .++++.|+.|+.+++|+|++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~-------a~~~Hgg---lsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~ 105 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGIN-------AVAYYRG---LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNT 105 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCC-------EEEECTT---SCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCC-------EEEEECC---CHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 998999879689999999999777987-------8997589---407778731205777899999886599838999862
Q ss_pred CCC---CCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEE
Q ss_conf 435---85688866799707998998999986047-89997099999
Q 000380 494 GEE---GLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLV 536 (1601)
Q Consensus 494 lee---GIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv 536 (1601)
+++ |+|++.+.+||+||.|.|..+|+||+||+ | |+.|.+.++
T Consensus 106 ~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l 151 (299)
T d1a1va2 106 CVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFV 151 (299)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEES
T ss_pred HHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCC-CCCCEEEEE
T ss_conf 0104787887851699968999898998762144379-998169897
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=99.64 E-value=1.9e-16 Score=116.62 Aligned_cols=68 Identities=29% Similarity=0.443 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 357999999957999991258504699987414999999941598338874998743128999999999999976
Q 000380 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLER 1596 (1601)
Q Consensus 1522 ~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~ 1596 (1601)
||+.|||+||+++|+.|.|+++.++||+|.+.|+|.|.|+ +... .|.|.| ||.|++.||..||..|+.
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~-----~~~~-~g~g~s-KK~Aeq~AA~~aL~~L~s 69 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-----TFVE-TGSGTS-KQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEET-----TEEE-EEEESS-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEE-----EEEE-ECCCCC-HHHHHHHHHHHHHHHHCC
T ss_conf 8389999999759999838999843787774168999986-----6787-637672-999999999999998459
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6e-16 Score=113.43 Aligned_cols=70 Identities=30% Similarity=0.354 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 535799999995799999125850469998741499999994159833887499874312899999999999997619
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1521 n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~ 1598 (1601)
||++.||||||++++ .|.|++++++||+|.+.|+|+|.|+ +++. .|.|.| ||.||+.||..||..|+...
T Consensus 3 ~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~-----~~~~-~g~g~s-KK~Aeq~AA~~al~~L~~~~ 72 (73)
T d2dixa1 3 TPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVG-----DITC-TGEGTS-KKLAKHRAAEAAINILKANA 72 (73)
T ss_dssp CHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEET-----TEEE-EECSSC-TTHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCEEEEEEEEE-----EEEE-EECCCC-HHHHHHHHHHHHHHHHHHCC
T ss_conf 877999999996798-9889986535898871799999998-----8998-861465-99999999999999987427
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.63 E-value=4.1e-15 Score=108.17 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCC-
Q ss_conf 8889999999953135898049999332416999999999500011343114772047877689999999999872499-
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE- 484 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~- 484 (1601)
|+|+..|.+++.... ..+.++||||+.+.+...+...+..... +. ...++| +++..+|..++++|.++.
T Consensus 68 S~K~~~l~~~l~~~~-~~g~kviIFs~~~~~~~~l~~~l~~~~~---~~---~~~i~G---~~~~~~R~~~i~~F~~~~~ 137 (244)
T d1z5za1 68 SGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELN---TE---VPFLYG---ELSKKERDDIISKFQNNPS 137 (244)
T ss_dssp CHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHC---SC---CCEECT---TSCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHC-CCCCCEEEEEECEEHHHHHHHHHHHHCC---CE---EEEEEC---CCCHHCCCHHHHHHHCCCC
T ss_conf 068999999887641-4666259996010067789999876135---12---899966---6420001104554430121
Q ss_pred CCEEE-EECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCE--EEE-EEECCCHHHHHHHHHHHHHHH
Q ss_conf 32999-805543585688866799707998998999986047-899970--999-992798768999999997689
Q 000380 485 LNLLV-ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE--YAF-LVDSGNQRELDLIKNFSKEED 555 (1601)
Q Consensus 485 ~~iLV-aT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~--~vi-lv~~~~~~~~~~~~~~~~~e~ 555 (1601)
..+|+ +|.++++|+|++.|+.||.||++||+..+.|+.||+ |.|+.. .++ ++..+.. +....+....+..
T Consensus 138 ~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Ti-ee~i~~~~~~K~~ 212 (244)
T d1z5za1 138 VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL-EEKIDQLLAFKRS 212 (244)
T ss_dssp CCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH-HHHHHHHHHHCHH
T ss_pred CHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCEEEEEEEECCCH-HHHHHHHHHHHHH
T ss_conf 00101431123566211200143204712446777654250156499972599998618999-9999999999999
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=6.4e-16 Score=113.26 Aligned_cols=70 Identities=30% Similarity=0.316 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 75357999999957999991258504699987414999999941598338874998743128999999999999976
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLER 1596 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~ 1596 (1601)
.|||+.||||||+++|+.|.|+++.++||+|.+.|+|.|+|+ | ... +|.|.| ||.||+.||+.||..|..
T Consensus 6 ~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~----~-~~~-~g~g~S-KK~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 6 SGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVG----N-EVA-TGTGPN-KKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEET----T-EEE-EEEESS-HHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEE----E-EEC-CCCCHH-HHHHHHHHHHHHHHHHCC
T ss_conf 881999999999649999979850244567750699999996----5-640-232037-899999999999999676
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=1.7e-16 Score=116.82 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67535799999995799999125850469998741499999994159833887499874312899999999999997619
Q 000380 1519 NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1519 ~~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~ 1598 (1601)
++|||++||||||++++. |.|++++++||+|.+.|+|.|.|+ |..+. .|.|.| ||.||+.||+.||..|++++
T Consensus 6 ~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~----g~~~~-~g~g~s-KK~Aeq~AA~~aL~~L~~~~ 78 (85)
T d1x49a1 6 PGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLID----EKEFP-EAKGRS-KQEARNAAAKLAVDILDNEN 78 (85)
T ss_dssp TTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEES----SCCCC-CEEESS-HHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCEEEEEEECC----CEEEE-CCCCCC-HHHHHHHHHHHHHHHHHHCC
T ss_conf 133999999999866999-758998721898874589988418----46750-556655-99999999999999998717
Q ss_pred CC
Q ss_conf 77
Q 000380 1599 YL 1600 (1601)
Q Consensus 1599 ~~ 1600 (1601)
.+
T Consensus 79 ~~ 80 (85)
T d1x49a1 79 KV 80 (85)
T ss_dssp CC
T ss_pred CC
T ss_conf 65
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=7.7e-16 Score=112.76 Aligned_cols=68 Identities=34% Similarity=0.462 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 753579999999579999912585046999874149999999415983388749987431289999999999999
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCL 1594 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L 1594 (1601)
.|||+.|||+||+++|+.|.|+++++.|++|.+.|+|.|.++ +.. ..|.|.| ||.|+++||+.||..|
T Consensus 9 ~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~-----~~~-~~g~G~S-KK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 9 CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-----RFI-EIGSGTS-KKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEET-----TEE-EEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEC-----CEE-ECCCCCC-HHHHHHHHHHHHHHHC
T ss_conf 897899999999749999979986643267775279999954-----224-1136452-9999999999999869
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=4.2e-16 Score=114.43 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 53579999999579999912585046999874149999999415983388749987431289999999999999
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCL 1594 (1601)
Q Consensus 1521 n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L 1594 (1601)
|||+.|||+||+++|+.|.|++++++||+|.+.|++.|.++ |..++ .|.|.| ||.|++.||+.||..|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~----~~~~~-~g~g~s-KK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVN----GKTIA-TGKGRT-KKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEET----TEEEE-EEEESS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEC----CEEEE-EEEECC-HHHHHHHHHHHHHHHH
T ss_conf 91789999999749999979999966888884299999989----99999-987289-9999999999999986
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.60 E-value=4.4e-16 Score=114.30 Aligned_cols=69 Identities=33% Similarity=0.405 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 75357999999957999991258504699987414999999941598338874998743128999999999999976
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLER 1596 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~ 1596 (1601)
.||++.||||||+++|+ |.|++++++||+|.+.|+|+|+|+ +... .|.|.| ||.||+.||..||..|++
T Consensus 7 k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~-----~~~~-~g~G~S-KK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 7 KSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVG-----SIVT-EGEGNG-KKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp SCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEET-----TEEE-EECCCS-TTSSSHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCEEEEEEEEEE-----EEEE-EECCCC-HHHHHHHHHHHHHHHHHC
T ss_conf 89899999999967989-708999713798870899999982-----1476-605676-999999999999999870
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.59 E-value=5.6e-16 Score=113.62 Aligned_cols=68 Identities=28% Similarity=0.363 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 535799999995799999125850469998741499999994159833887499874312899999999999997
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1521 n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~ 1595 (1601)
|||+.||||||+++|+.|.|++++++||+|.+.|+|.|.++ | .. ..|.|.| ||.|+++||..||..|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~----~-~~-~~g~g~s-KK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIK----E-YR-TLGEGKS-KKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEET----T-EE-EEEEESS-HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEC----C-EE-EEEECCC-HHHHHHHHHHHHHHHHC
T ss_conf 90789999999759999989999841888784799999988----7-79-9995099-99999999999999739
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=5.8e-16 Score=113.50 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 75357999999957999991258504699987414999999941598338874998743128999999999999976197
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREGY 1599 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~~ 1599 (1601)
.|+|+.||||||++++. |.|++ .+.||.|.+.|+|.|.|+ |..+...|.|.| ||.|++.||+.||+.|.+.|.
T Consensus 6 ~~~Ks~LqE~~qk~k~~-P~Y~~-~~~G~~h~~~F~~~v~v~----g~~~~~~g~g~s-KK~AEq~AA~~al~~L~~~~~ 78 (99)
T d1whqa_ 6 SGIKNFLYAWCGKRKMT-PAYEI-RAVGNKNRQKFMCEVRVE----GFNYAGMGNSTN-KKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CSSHHHHHHHHHHTTCC-CEEEE-EEEECSSSEEEEEEEECT----TCSCCEEEEESS-HHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHCCCC-CEEEE-ECCCCCCCCEEEEEEEEC----CCCCEECCCCCC-HHHHHHHHHHHHHHHHHHCCC
T ss_conf 66889999999868999-86998-402478886089999851----654310057752-889999999999999998599
Q ss_pred C
Q ss_conf 7
Q 000380 1600 L 1600 (1601)
Q Consensus 1600 ~ 1600 (1601)
+
T Consensus 79 ~ 79 (99)
T d1whqa_ 79 V 79 (99)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.2e-15 Score=108.09 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95567535799999995799999125850469998741499999994159833887499874312899999999999997
Q 000380 1516 GLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1516 ~~~~~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~ 1595 (1601)
++...|||+.||||||++++. |.|+. .++||.|.+.|+|+|.|+ |..+. .|.|.| ||.||+.||+.||..|.
T Consensus 10 ~~~~~n~~s~L~E~~Qk~~~~-~~y~~-~~~g~~h~~~F~~~v~i~----g~~~~-~g~G~s-KK~Akq~AA~~Al~~L~ 81 (89)
T d1qu6a2 10 GLSMGNYIGLINRIAQKKRLT-VNYEQ-CASGVHGPEGFHYKCKMG----QKEYS-IGTGST-KQEAKQLAAKLAYLQIL 81 (89)
T ss_dssp CCCCCCCHHHHHHHHHHSCCE-EEEEE-EEECSSSSSEEEEEEEEE----TTBCC-EEEESS-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCC-CCEEE-ECCCCCCCCCEEEEEEEC----CCCCC-CCCCCH-HHHHHHHHHHHHHHHHH
T ss_conf 765328999999999962887-64266-315787887569999989----70366-656526-99999999999999997
Q ss_pred HCCC
Q ss_conf 6197
Q 000380 1596 REGY 1599 (1601)
Q Consensus 1596 ~~~~ 1599 (1601)
.+..
T Consensus 82 ~~~~ 85 (89)
T d1qu6a2 82 SEET 85 (89)
T ss_dssp HCCC
T ss_pred CCCC
T ss_conf 0379
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.9e-14 Score=103.93 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 35799999995799999125850469998741499999994159833887499874312899999999999997619
Q 000380 1522 ARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1522 ~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~ 1598 (1601)
||+.||||||++++++ .|+. .++||+|.+.|+|+|.|+ |..+. .|.|.| ||+|||.||+.||..|....
T Consensus 1 Y~s~L~E~~Qk~~~~~-~~~~-~~~G~~h~~~F~~~v~v~----~~~~~-~g~G~s-KK~Aeq~AA~~Al~~L~~~~ 69 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSV-NYEQ-CEPNSELPQRFICKCKIG----QTMYG-TGSGVT-KQEAKQLAAKEAYQKLLKSP 69 (76)
T ss_dssp HHHHHHHHHHHTTCCE-EEEE-CCCSSSSSCCEEEEEEES----SCEEE-EEEESS-HHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHCCCC-CCCC-CCCCCCCCCCEEEEEEEC----CEEEC-CCCCCH-HHHHHHHHHHHHHHHHHCCC
T ss_conf 9489999999868997-6444-776989997589999999----99957-857627-99999999999999997048
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6e-14 Score=100.85 Aligned_cols=67 Identities=24% Similarity=0.149 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 535799999995799999125850469998741499999994159833887499874312899999999999997
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1521 n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~ 1595 (1601)
|||+.||||||++++..|.|.+...+|++| .|+|+|.|+ |..+. .|.|.| ||.||+.||+.||+.|.
T Consensus 10 ~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~--~F~~~v~i~----g~~~~-~g~G~s-KK~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 10 SEVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTID----GVTYG-SGTASS-KKLAKNKAARATLEILI 76 (85)
T ss_dssp CHHHHHHHHHHHHTCSCCEEEEEECSSSSC--CEEEEEEET----TEEEE-EEEESS-HHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CEEEEEEEC----CEEEE-CCCCCH-HHHHHHHHHHHHHHHHH
T ss_conf 988999999998299999737875478988--889999999----99974-478412-99999999999999998
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=2.7e-13 Score=96.76 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 75357999999957999991258504699987414999999941598338874998-74312899999999999997
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEP-QAKKKGAAEHAAEGMLWCLE 1595 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g-~s~KK~Ak~~AA~~aL~~L~ 1595 (1601)
.|||+.||||||+++|+.|.|+++.+ .|.+.|+|+|.|+ |..+. .|.| +| ||.|+|.||+.||..|.
T Consensus 26 ~~pKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~v~----g~~~~-s~~g~~S-KK~AEq~AA~~AL~~Lg 93 (128)
T d1whna_ 26 ITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVA----EQKYQ-STLWDKS-KKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEET----TEEEE-ESSCBSS-HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCEEEEEEC----CEEEE-CCCCCCC-HHHHHHHHHHHHHHHHC
T ss_conf 98789999999863999976887622---5577777999988----84765-1677453-89999999999999838
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=2.3e-13 Score=97.23 Aligned_cols=67 Identities=28% Similarity=0.301 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7535799999995799999125850469998741499999994159833887499874312899999999999997619
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~ 1598 (1601)
.||++.|||+|++ +.|++++++||+|.+.|+|.|.|+ |..+ .|.|.| ||.||++||..||..|....
T Consensus 4 Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~----~~~~--~g~G~S-KK~Ak~~AA~~aL~~L~~~~ 70 (71)
T d2b7va1 4 KNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVD----GQFF--EGSGRN-KKLAKARAAQSALATVFNLH 70 (71)
T ss_dssp SCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECS----SCEE--EEEESS-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCC-----CEEEEEEEECCCCCCEEEEEEEEC----CEEE--EECCCC-HHHHHHHHHHHHHHHHHCCC
T ss_conf 7989999997659-----868992516899897399999999----9999--816898-89999999999999987468
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=4.5e-12 Score=89.10 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7535799999995799999125850469998741499999994159833887499874312899999999999997619
Q 000380 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1520 ~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~ 1598 (1601)
-|++++|||++ +.|.|+++.++||+|.+.|+|.|.|+ |..+ .|.|.| ||.||++||..||..|.-.+
T Consensus 12 ~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~----g~~~--~g~G~S-KK~Aeq~AA~~aL~~L~~~~ 78 (84)
T d2dmya1 12 MNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVD----GTTY--EASGPS-KKTAKLHVAVKVLQAMGYPT 78 (84)
T ss_dssp THHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEET----TEEE--EEEESS-HHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHC-----CCCEEEEEEEECCCCCCEEEEEEEEC----CEEE--ECCCCC-HHHHHHHHHHHHHHHHCCCC
T ss_conf 49999998707-----89869997706898897599999999----9999--858999-89999999999999948899
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=1.6e-12 Score=91.89 Aligned_cols=73 Identities=18% Similarity=0.057 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67535799999995799999125850469998741499999994159833887499874312899999999999997619
Q 000380 1519 NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREG 1598 (1601)
Q Consensus 1519 ~~n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~~~ 1598 (1601)
+.|+|++|||+||+.+.. |.|+++++ |++|.+.|++.|.+. + + .+...|.|.| ||.|+|+||+.||..+.-..
T Consensus 5 d~~~K~~L~e~~~~~g~~-P~Y~~~~~-~~~~~~~f~v~~~v~--~-~-~~~~~g~g~S-KK~AEq~AA~~aL~~~~~l~ 77 (81)
T d1t4oa_ 5 DMNAKRQLYSLIGYASLR-LHYVTVKK-PTAVDPNSIVECRVG--D-G-TVLGTGVGRN-IKIAGIRAAENALRDKKMLD 77 (81)
T ss_dssp CTTHHHHHHHHHCCGGGC-CEEEEEEC-CCSSCCCEEEEEECT--T-C-CEEEEEEESS-HHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHCCCCC-CEEEEECC-CCCCCCCEEEEEEEE--C-C-CEEEECCCCH-HHHHHHHHHHHHHHHCCHHH
T ss_conf 568999999998308998-57997014-787889889999996--6-8-2587645330-10899999999998322888
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=1.3e-11 Score=86.17 Aligned_cols=64 Identities=28% Similarity=0.320 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5357999999957999991258504699987414999999941598338874998743128999999999999976
Q 000380 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLER 1596 (1601)
Q Consensus 1521 n~~~~L~e~cqk~~~~~P~y~~~~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~g~s~KK~Ak~~AA~~aL~~L~~ 1596 (1601)
|+++.|+|+ + +.|.|++++++||+|.+.|+|.|+|+ |..+ .|.|.| ||.||++||..||+.|.+
T Consensus 8 ~~l~~L~e~---~--~~~~y~~~~~~G~~h~~~F~~~v~v~----~~~~--~g~G~S-KK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 8 NALMQLNEI---K--PGLQYMLLSQTGPVHAPLFVMSVEVN----GQVF--EGSGPT-KKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp HHHHHHHHH---C--SCCEEEEEEEECSSSSCEEEEEEESS----SSEE--EEEESS-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHC---C--CCCEEEEEEEECCCCCCEEEEEEEEC----CEEE--ECCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 999999851---8--99879998712899996499999999----9999--918874-999999999999999853
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.17 E-value=6.4e-11 Score=81.84 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=75.8
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 80499993324169999999995000113431147720478776899999999998724993299980554358568886
Q 000380 424 HMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTC 503 (1601)
Q Consensus 424 ~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~~iLVaT~vleeGIDip~~ 503 (1601)
+.+++|||.++..+..++..|+..+. + ++.+|+. +...++ ++|++|+.++||||+++|.|||| .+
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~----~---V~~l~~~---~~~~e~----~~~~~~~~~~~~~t~~~~~~~~~-~~ 100 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGK----S---VVVLNRK---TFEREY----PTIKQKKPDFILATDIAEMGANL-CV 100 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC----C---EEECCSS---SCC------------CCCSEEEESSSTTCCTTC-CC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCC----E---EEEECCC---CCHHHH----HHHHCCCCCEEEEECHHHHCEEC-CC
T ss_conf 99899994999999999999986698----0---9997686---757677----66515776789970036536412-73
Q ss_pred CEEEECCC-------------------CCCHHHHHHHHHCC-CCCCCE-EEEEEE
Q ss_conf 67997079-------------------98998999986047-899970-999992
Q 000380 504 CLVIRFDL-------------------PETVASFIQSRGRA-RMPQSE-YAFLVD 537 (1601)
Q Consensus 504 ~~VI~fd~-------------------p~s~~~yiQr~GRA-R~g~s~-~vilv~ 537 (1601)
..||.++. |.+..+..||+||+ |.+... .++++.
T Consensus 101 ~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 101 ERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp SEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred EEEEECCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 3898668500003565878826873242689999986466666678860899938
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.2e-10 Score=80.18 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCC-----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 36787726899999831699753201-----3579849999999312477027699973799999999999999982433
Q 000380 1376 SNLQLNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1376 ~~~~~~P~~~L~e~~~~~~~~~~~~~-----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
.+.+.++|++|+||||++++.+.|.. +.|++.|+|.|.|++.. ++.|.|.|||+|++.||+.||..|...
T Consensus 3 ~~~~~~yk~~L~E~~Qk~~~~~~y~~~~~~Gp~h~~~F~~~v~v~g~~-----~~~g~g~sKK~Aeq~AA~~aL~~L~~~ 77 (85)
T d1x49a1 3 SDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKE-----FPEAKGRSKQEARNAAAKLAVDILDNE 77 (85)
T ss_dssp CCCTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCC-----CCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCEE-----EECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 898133999999999866999758998721898874589988418467-----505566559999999999999999871
Q ss_pred CCC
Q ss_conf 999
Q 000380 1451 GYV 1453 (1601)
Q Consensus 1451 ~~~ 1453 (1601)
+..
T Consensus 78 ~~~ 80 (85)
T d1x49a1 78 NKV 80 (85)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 765
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2e-10 Score=78.69 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87726899999831699753201----357984999999931247702769997379999999999999998243399
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGY 1452 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1452 (1601)
..||++.|+||||++++.+.|.. +.|.+.|.|.|.|++.. ++.|.|+|||+||+.||+.||..|..+..
T Consensus 13 ~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~h~~~F~~~v~i~g~~-----~~~g~G~sKK~Akq~AA~~Al~~L~~~~~ 85 (89)
T d1qu6a2 13 MGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKE-----YSIGTGSTKQEAKQLAAKLAYLQILSEET 85 (89)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTB-----CCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEECCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 32899999999996288764266315787887569999989703-----66656526999999999999999970379
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.3e-10 Score=78.41 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCC------CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 36787726899999831699753201------3579849999999312477027699973799999999999999982
Q 000380 1376 SNLQLNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKL 1447 (1601)
Q Consensus 1376 ~~~~~~P~~~L~e~~~~~~~~~~~~~------~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1447 (1601)
.....|||+.|||||++.++.++.|. +.|.+.|.|.|.|++. .+.|.|+|||+|++.||+.||+.|
T Consensus 5 ~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~------~~~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 5 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF------IEIGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE------EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCE------EECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 667889789999999974999997998664326777527999995422------411364529999999999999869
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=2.7e-10 Score=77.91 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC------CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 87726899999831699753201------357984999999931247702769997379999999999999998243
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~------~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
..+|+++|+||||++++..|.|. +.|.+.|+|.|.|++.. .+|.|.|||+|++.||+.||..|..
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~------~~g~g~SKK~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV------ATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE------EEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEEEE------CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8881999999999649999979850244567750699999996564------0232037899999999999999676
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-10 Score=80.18 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC-----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87726899999831699753201-----357984999999931247702769997379999999999999998243399
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGY 1452 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~-----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1452 (1601)
+.++|++|+||||++++.+.|.. +.|.+.|+|.|.|++.. ++.|.|.|||+|++.||+.||+.|.+...
T Consensus 12 ~~~y~s~LqE~~Qk~~~~p~y~~~~~~Gp~h~~~F~v~v~v~~~~-----~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~ 85 (90)
T d1qu6a1 12 AGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGRE-----FPEGEGRSKKEAKNAAAKLAVEILNKEKK 85 (90)
T ss_dssp SCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSC-----CCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEECCEE-----EECCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 778999999999982999857998710798874479999977566-----40567876999999999999999983077
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=4.9e-10 Score=76.29 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCCCCCCC----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26899999831699753201----3579849999999312477027699973799999999999999982433999
Q 000380 1382 PIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYV 1453 (1601)
Q Consensus 1382 P~~~L~e~~~~~~~~~~~~~----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 1453 (1601)
+++.|+||||++++.+.+.. +.|.+.|+|.|.|++.. ++.|.|.|||+|++.||+.||..|......
T Consensus 1 Y~s~L~E~~Qk~~~~~~~~~~~~G~~h~~~F~~~v~v~~~~-----~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~ 71 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTM-----YGTGSGVTKQEAKQLAAKEAYQKLLKSPPK 71 (76)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCE-----EEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEE-----ECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 94899999998689976444776989997589999999999-----578576279999999999999999704887
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.1e-10 Score=78.65 Aligned_cols=65 Identities=20% Similarity=0.095 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHCCCCCCCCC-----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 7726899999831699753201-----3579849999999312477027699973799999999999999982433
Q 000380 1380 LNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1380 ~~P~~~L~e~~~~~~~~~~~~~-----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
++|++.|+|||+++++.+.|.. +.|.+.|++.|.|++. .+.|.|+|||+|++.||+.||..|+..
T Consensus 2 K~Pis~L~E~~qk~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~------~~~g~g~sKK~Aeq~AA~~al~~L~~~ 71 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDI------TCTGEGTSKKLAKHRAAEAAINILKAN 71 (73)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETTE------EEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEEE------EEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 5877999999996798988998653589887179999999889------988614659999999999999998742
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=99.05 E-value=2.6e-10 Score=78.05 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCCCCCC------CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 26899999831699753201------35798499999993124770276999737999999999999999824
Q 000380 1382 PIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448 (1601)
Q Consensus 1382 P~~~L~e~~~~~~~~~~~~~------~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1448 (1601)
||++|||+|+++++.+|.|. +.|.+.|.|.|.|++.. ..|.|+|||+|++.||+.||+.|+
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~------~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV------ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE------EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE------EECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8389999999759999838999843787774168999986678------763767299999999999999845
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=3.5e-10 Score=77.19 Aligned_cols=66 Identities=17% Similarity=0.027 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 87726899999831699753201----357984999999931247702769997379999999999999998243
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
.++|++.||||||+.++..+.|. ..+...|.+.|.|++.. ++.|.|+|||.|++.||+.||+.|..
T Consensus 8 ~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~~-----~~~g~G~sKK~Aeq~AA~~AL~~L~~ 77 (85)
T d1x47a1 8 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVT-----YGSGTASSKKLAKNKAARATLEILIP 77 (85)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEE-----EEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCEE-----EECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 95988999999998299999737875478988889999999999-----74478412999999999999999988
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=6.3e-10 Score=75.63 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHCCCCCCCCC----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7726899999831699753201----35798499999993124770276999737999999999999999824339999
Q 000380 1380 LNPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVP 1454 (1601)
Q Consensus 1380 ~~P~~~L~e~~~~~~~~~~~~~----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 1454 (1601)
.|||+.||||||+++..+.|.. +.|.+.|+|+|.|.+......+.+.|.|.|||+|++.||+.||+.|...+...
T Consensus 26 ~n~Ks~LqE~~Qk~k~~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g~i~ 104 (113)
T d1uila_ 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIE 104 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4799999999986799996598554268899599999994212597677640626099999999999999999748867
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3.8e-10 Score=76.97 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87726899999831699753201----3579849999999312477027699973799999999999999982433999
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYV 1453 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 1453 (1601)
..++|+.||||||++++.+.|.. +.|.+.|.|.|.|++.. +.+.|.|.|||+|++.||+.||..|.+.+..
T Consensus 5 ~~~~Ks~LqE~~qk~k~~P~Y~~~~~G~~h~~~F~~~v~v~g~~----~~~~g~g~sKK~AEq~AA~~al~~L~~~~~~ 79 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFN----YAGMGNSTNKKDAQSNAARDFVNYLVRINEV 79 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCS----CCEEEEESSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCC----CEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 76688999999986899986998402478886089999851654----3100577528899999999999999985999
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=3.8e-10 Score=76.97 Aligned_cols=62 Identities=24% Similarity=0.197 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCC------CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 726899999831699753201------3579849999999312477027699973799999999999999982
Q 000380 1381 NPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKL 1447 (1601)
Q Consensus 1381 ~P~~~L~e~~~~~~~~~~~~~------~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1447 (1601)
+||+.|+||||+.++..|.|. +.|.+.|++.|.+++.. ++.|.|+|||+|++.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-----~~~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKT-----IATGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEE-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEE-----EEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 91789999999749999979999966888884299999989999-----999872899999999999999986
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=6.9e-10 Score=75.37 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC---CCCCCEEEEEEEEECCCCCEEEEEEEEE-CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 87726899999831699753201---3579849999999312477027699973-799999999999999982433
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS---LKKGGKFLAEAKVTGKDKDVFISACATN-LSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~---~~~~~~f~~~v~v~~~~~~~~~~~~g~g-~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
.++||+.||||||++++.++.|. ..++..|++.|.|++.. +..+.| +|||+|++.||+.||+.|...
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~~-----~~s~~g~~SKK~AEq~AA~~AL~~Lg~~ 95 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQK-----YQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEE-----EEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCEE-----EECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9987899999998639999768876225577777999988847-----6516774538999999999999983898
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.96 E-value=6.4e-10 Score=75.57 Aligned_cols=62 Identities=23% Similarity=0.161 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHCCCCCCCCC------CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 726899999831699753201------35798499999993124770276999737999999999999999824
Q 000380 1381 NPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448 (1601)
Q Consensus 1381 ~P~~~L~e~~~~~~~~~~~~~------~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1448 (1601)
+|++.|+||||++++.+|.|. +.|.+.|++.|.|++.. +.|.|+|||.|++.||..||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~------~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR------TLGEGKSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE------EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEE------EEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 90789999999759999989999841888784799999988779------999509999999999999999739
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.95 E-value=1.4e-10 Score=79.66 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCC-----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 787726899999831699753201-----357984999999931247702769997379999999999999998243
Q 000380 1378 LQLNPIRELLELCNSYDLDLQFPS-----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1378 ~~~~P~~~L~e~~~~~~~~~~~~~-----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
..++|++.|+|||+++++.+.|.. +.|.+.|+|.|.|++. .+.|.|.|||+|++.||..||..|+.
T Consensus 5 ~~k~Pvs~L~E~~q~~~~~~~y~~~~~~G~~h~~~F~~~v~v~~~------~~~g~G~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 5 DKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSI------VTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETTE------EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEEEE------EEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 788989999999996798970899971379887089999998214------76605676999999999999999870
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.90 E-value=4.3e-08 Score=64.08 Aligned_cols=152 Identities=16% Similarity=0.242 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH---HHHHHHHHCCCCEE
Q ss_conf 049999999998-50698999469606999999999999999618999589999178657999---99999987098199
Q 000380 59 ARKYQLELCKKA-MEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ---QAKVIEESIGFKVR 134 (1601)
Q Consensus 59 ~R~yQ~e~~~~a-l~~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Q---q~~~l~~~~~l~v~ 134 (1601)
.|+|..+++-.+ +.+.-|+-+.||-|||+++.+++. ...+ .|+.|-+++..--|+.- |...+-+++|++|+
T Consensus 79 ~RhyDVQLiGgi~L~~G~iaem~TGEGKTL~a~l~a~--l~al---~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg 153 (273)
T d1tf5a3 79 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVY--LNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 153 (273)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHH--HHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHH--HHHH---CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 4773047899999876553020688751039999999--9996---6998569715730033124577679998298734
Q ss_pred EEECCCCCCCCHHHHHHHHCCCEEEEECHHHHH-HHHHCCC------CCCCCEEEEEEECCCCCCCC-CCCHH-------
Q ss_conf 984798767743218863036709998499999-9882166------68651529999657644334-89749-------
Q 000380 135 TFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRF------IKMELIALLIFDECHHAQVK-SNHPY------- 199 (1601)
Q Consensus 135 ~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll-~~l~~~~------~~l~~i~liViDEaH~~~~~-~~~~y------- 199 (1601)
....+.....++..+. +||+.+|..-|. |.|+... .-...+.+.|+||++.+.-+ ...|.
T Consensus 154 ~~~~~~~~~~r~~~Y~-----~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~ 228 (273)
T d1tf5a3 154 LNLNSMSKDEKREAYA-----ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSM 228 (273)
T ss_dssp ECCTTSCHHHHHHHHH-----SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHH-----CCCEECCHHHHHHHHCCHHHHCCHHHHCCCCCCEEEEECCHHHHHHCCCCCEEECCCCC
T ss_conf 5655457777777760-----78355025555444411433258666456888789997534662534688558536864
Q ss_pred --HHH-HHHHCCCCCCCCCEEEEEECCC
Q ss_conf --999-9987299989998899981345
Q 000380 200 --AKI-MKDFYKPDIMKVPRIFGMTASP 224 (1601)
Q Consensus 200 --~~I-m~~~~~~~~~~~p~ilgLTATP 224 (1601)
+.| .+.|++ .-+++-|||+|.
T Consensus 229 ~~a~it~q~~f~----~y~~l~gmtgta 252 (273)
T d1tf5a3 229 TLATITFQNYFR----MYEKLAGMTGTA 252 (273)
T ss_dssp EEEEEEHHHHHT----TSSEEEEEESCC
T ss_pred CHHHHHHHHHHH----HHHHHHCCCCCC
T ss_conf 154644999999----999985774630
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=2.5e-09 Score=71.89 Aligned_cols=66 Identities=21% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 87726899999831699753201-3579849999999312477027699973799999999999999982433
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS-LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~-~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
.+||++.|+|+|++..+.+.... +.|.+.|++.|.|++.. ..|.|+|||+||++||+.||+.|...
T Consensus 3 ~Knpv~~L~E~~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~------~~g~G~SKK~Ak~~AA~~aL~~L~~~ 69 (71)
T d2b7va1 3 GKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQF------FEGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHCCSCEEEEEECCCCTTTCCEEEEEECSSCE------EEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEECCEE------EEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 87989999997659868992516899897399999999999------98168988999999999999998746
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=1.3e-08 Score=67.42 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCC----CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 6787726899999831699753201----357984999999931247702769997379999999999999998243
Q 000380 1377 NLQLNPIRELLELCNSYDLDLQFPS----LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1377 ~~~~~P~~~L~e~~~~~~~~~~~~~----~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
+++++++++|+|||++.+..+.|.. ..+...|.+.|.+.+.. ..+.|.|.|||.|++.||+.||+.+..
T Consensus 3 ~id~~~K~~L~e~~~~~g~~P~Y~~~~~~~~~~~~f~v~~~v~~~~----~~~~g~g~SKK~AEq~AA~~aL~~~~~ 75 (81)
T d1t4oa_ 3 KLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGT----VLGTGVGRNIKIAGIRAAENALRDKKM 75 (81)
T ss_dssp CCCTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCC----EEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCC----EEEECCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 5556899999999830899857997014787889889999996682----587645330108999999999983228
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=2.5e-07 Score=59.32 Aligned_cols=122 Identities=17% Similarity=0.125 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88899999999531358980499993324169999999995000113431147720478776899999999998724993
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~~ 485 (1601)
..|...+.+-+.+. ...+..+||++.++...+.++.+|+..+. +...+ +. .. .+++..+-...-..-
T Consensus 17 ~eK~~AIi~eV~~~-~~~grPVLIgT~SIe~SE~ls~~L~~~gi----~h~vL---nA----k~-~~~Ea~II~~Ag~~g 83 (175)
T d1tf5a4 17 EGKFKAVAEDVAQR-YMTGQPVLVGTVAVETSELISKLLKNKGI----PHQVL---NA----KN-HEREAQIIEEAGQKG 83 (175)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCEEEEESCHHHHHHHHHHHHTTTC----CCEEE---CS----SC-HHHHHHHHTTTTSTT
T ss_pred HHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHCCC----CCEEE---HH----HH-HHHHHHHHHHCCCCC
T ss_conf 99999999999999-96599889996819999999999997599----71221---02----26-899888887513798
Q ss_pred CEEEEECCCCCCCCCCCCC--------EEEECCCCCCHHHHHHHHHCC-CCCCCEEEE-EEECCC
Q ss_conf 2999805543585688866--------799707998998999986047-899970999-992798
Q 000380 486 NLLVATKVGEEGLDIQTCC--------LVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDSGN 540 (1601)
Q Consensus 486 ~iLVaT~vleeGIDip~~~--------~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vi-lv~~~~ 540 (1601)
.|.|||+++++|.||.--. +||....+.+.+-..|.+||+ |.|+.|... ++.-++
T Consensus 84 ~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 84 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CEEEHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCCCEEEEECCH
T ss_conf 16644558870887566388985798589984048526678888423442078745189999087
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6.2e-08 Score=63.09 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 87726899999831699753201-3579849999999312477027699973799999999999999982433
Q 000380 1379 QLNPIRELLELCNSYDLDLQFPS-LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1379 ~~~P~~~L~e~~~~~~~~~~~~~-~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1450 (1601)
.+||+.+|+|+.+...+.+.... +.|.+.|++.|.|++.. ..|.|+|||+|++.||+.||+.|...
T Consensus 11 ~~n~~~~L~e~~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~------~~g~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T d2dmya1 11 LMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTT------YEASGPSKKTAKLHVAVKVLQAMGYP 77 (84)
T ss_dssp CTHHHHHHHHHSCSCCCEEEEEESCSSSCEEEEEEEETTEE------EEEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEECCEE------EECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 44999999870789869997706898897599999999999------98589998999999999999994889
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=1e-07 Score=61.68 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCC---CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 787726899999831699753201---357984999999931247702769997379999999999999998243
Q 000380 1378 LQLNPIRELLELCNSYDLDLQFPS---LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 1449 (1601)
Q Consensus 1378 ~~~~P~~~L~e~~~~~~~~~~~~~---~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1449 (1601)
.+++|+.+|+|+. .+..+.... +.|++.|++.|.|++.. ..|.|+|||+|++.||+.||+.|.+
T Consensus 5 ~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~------~~g~G~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQV------FEGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSE------EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHCC--CCCEEEEEEEECCCCCCEEEEEEEECCEE------EECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9819999998518--99879998712899996499999999999------9918874999999999999999853
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.14 E-value=3.5e-08 Score=64.70 Aligned_cols=89 Identities=13% Similarity=-0.000 Sum_probs=61.3
Q ss_pred CCCCCCEEEECCCCEEEEEE---EECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 33458678835699189998---003787778989888998725456562076445899980883103542233447766
Q 000380 875 SDVENSLVYATHKKWFYLVT---NIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKL 951 (1601)
Q Consensus 875 ~~~~~~~V~~~~~~~~y~v~---~i~~d~~p~S~~~~~~~~ty~ey~~~~y~~~l~~~~QPll~~~~~~~~~n~l~~~~~ 951 (1601)
..+.+.+|.|.|+++.|.+. +++++.+|.+.+..+...+|.+||.++|++ +.+||+|..+.-.+.+
T Consensus 185 k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~~~~s~ieYYk~~Yni---D~~QPlLvs~~k~~~~-------- 253 (322)
T d1u04a1 185 LKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQV---DLKQPAILAKFASKIK-------- 253 (322)
T ss_dssp TCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCSC---CTTSCEEEEEESCC----------
T ss_pred HHEECEEEEECCCCCCEECCHHHCCCCCCCCCCEECCCCCCCHHHHHHHHCCC---CCCCCEEEEECCCCCC--------
T ss_conf 63016499750578661044120277565866222258966399999984599---9778559875134567--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 7743233443221164222232103554757
Q 000380 952 EDSESHELEEYFDDLPPELCQLKIIGFSKDI 982 (1601)
Q Consensus 952 ~~~~~~~~~~~~~~L~pelC~~~~~~~~~~~ 982 (1601)
...+..++|+||||.+ .+++..+
T Consensus 254 ------~~~~~~i~LiPELc~l--TGltD~m 276 (322)
T d1u04a1 254 ------KNKNYKIYLLPQLVVP--TYNAEQL 276 (322)
T ss_dssp ---------CCCEEECTTTEEE--EEEGGGC
T ss_pred ------CCCCEEEEECHHHHHH--CCCCHHH
T ss_conf ------9984079971676555--1883788
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.83 E-value=0.00058 Score=38.15 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHH-HHHHHHHCCC
Q ss_conf 888999999995313589804999933241699999999950001134311477204787768999999-9999872499
Q 000380 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMK-SILEKFRSGE 484 (1601)
Q Consensus 406 s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~-~vl~~Fr~g~ 484 (1601)
..|...+++-+... ...+..+||.+.++...+.|+.+|...+. ....+.. .. .+|+ +++. ..|.
T Consensus 17 ~~K~~Avv~ei~~~-h~~GqPVLVGT~SVe~SE~lS~lL~~~gi----~h~vLNA-------K~-herEAeIIA--qAG~ 81 (219)
T d1nkta4 17 EAKYIAVVDDVAER-YAKGQPVLIGTTSVERSEYLSRQFTKRRI----PHNVLNA-------KY-HEQEATIIA--VAGR 81 (219)
T ss_dssp HHHHHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHHHHHTTC----CCEEECS-------SC-HHHHHHHHH--TTTS
T ss_pred HHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHHCC----CHHCCCH-------HH-HHHHHHHHH--HCCC
T ss_conf 99999999999999-96699889961759999999999987253----4322410-------46-888889999--6466
Q ss_pred -CCEEEEECCCCCCCCCCC----------------------------------------------------CCEEEECCC
Q ss_conf -329998055435856888----------------------------------------------------667997079
Q 000380 485 -LNLLVATKVGEEGLDIQT----------------------------------------------------CCLVIRFDL 511 (1601)
Q Consensus 485 -~~iLVaT~vleeGIDip~----------------------------------------------------~~~VI~fd~ 511 (1601)
-.|-|||+++++|-||.- ==+||-...
T Consensus 82 ~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTEr 161 (219)
T d1nkta4 82 RGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER 161 (219)
T ss_dssp TTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC
T ss_pred CCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 88379620004787764646860155677765414673128789999998777888998887777777449967984255
Q ss_pred CCCHHHHHHHHHCC-CCCCCEEEEE-EECCCH
Q ss_conf 98998999986047-8999709999-927987
Q 000380 512 PETVASFIQSRGRA-RMPQSEYAFL-VDSGNQ 541 (1601)
Q Consensus 512 p~s~~~yiQr~GRA-R~g~s~~vil-v~~~~~ 541 (1601)
..|-+---|-+||+ |.|+.|..-| +.-++.
T Consensus 162 HeSrRIDnQLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 162 HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 66555553302666456897512567744679
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=0.0001 Score=42.89 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf 4999999999850-6989994696069999999999999996189995899991786579999999998709-8199984
Q 000380 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG-FKVRTFC 137 (1601)
Q Consensus 60 R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~-l~v~~~~ 137 (1601)
-+.|.+++..++. +-++|..|.|+|||.+....+..+..... ..+.++++++||-.-+....+.+..... +......
T Consensus 150 ~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~-~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~ 228 (359)
T d1w36d1 150 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 228 (359)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCEEHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 6389999999970885999768988752169999999999875-269828984375999999998887777645810445
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 7987677432188630367099984999999882166686515299996576443
Q 000380 138 GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 138 G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~ 192 (1601)
... ........ ...+-.++.. ..+.+.......++++|+||+-.+.
T Consensus 229 ~~~-~~~~~~t~------~~ll~~~~~~--~~~~~~~~~~l~~d~lIIDEaSmv~ 274 (359)
T d1w36d1 229 KKR-IPEDASTL------HRLLGAQPGS--QRLRHHAGNPLHLDVLVVDEASMID 274 (359)
T ss_dssp CCS-CSCCCBTT------TSCC-------------CTTSCCSCSEEEECSGGGCB
T ss_pred HHH-HHHHHHHH------HHHHHHHHCC--HHHHHHHHCCCCCCEEEEHHHHCCC
T ss_conf 542-01345578------9987631000--6777754366654134653321448
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=2.7e-05 Score=46.58 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCCCEEEECCCC---EEEEEEEECCCCCCCCCCCC----C--CCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 3458678835699---18999800378777898988----8--9987254565620764458999808831035422334
Q 000380 876 DVENSLVYATHKK---WFYLVTNIVFEKNGYSPYKD----S--DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL 946 (1601)
Q Consensus 876 ~~~~~~V~~~~~~---~~y~v~~i~~d~~p~S~~~~----~--~~~ty~ey~~~~y~~~l~~~~QPll~~~~~~~~~n~l 946 (1601)
.+.+.-|.+.|.+ +.|.|.++.++.++.+.|+. + ...|+.+||.++|++.+.+|++|+|.+..-.
T Consensus 36 ~Lkgl~V~~~h~~~~~r~y~I~gl~~~~~~~~~F~~~~~~g~~~~iTV~~YFk~~Y~~~L~~p~lP~l~vg~~~------ 109 (126)
T d1si2a_ 36 EIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQ------ 109 (126)
T ss_dssp HHTTCEEEECTTTTCCCEEEEEEEEEEETTTCEEECC------CEEEHHHHHHHTSCCCCSCTTSEEEEESCGG------
T ss_pred HHCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEECCCC------
T ss_conf 83882999955898853699730237888775342015778852788999999871963479998889857899------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4776677432334432211642222321
Q 000380 947 HNRKLEDSESHELEEYFDDLPPELCQLK 974 (1601)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~L~pelC~~~ 974 (1601)
...++|+|+|.+.
T Consensus 110 ---------------k~~~lP~Elc~I~ 122 (126)
T d1si2a_ 110 ---------------KHTYLPLEVCNIV 122 (126)
T ss_dssp ---------------GCEEEEGGGEEEC
T ss_pred ---------------CCEEECCEEEEEC
T ss_conf ---------------9869766845956
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.30 E-value=0.00041 Score=39.13 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 049999999998506989994696069999999999999996189995899991786579999999998709
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 59 ~R~yQ~e~~~~al~~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~ 130 (1601)
+.+=|.++++. ...+.+|.++-|||||.+.+..+..+.+....+ ..+++++++|.+++......+.+..+
T Consensus 2 L~~eQ~~av~~-~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~-~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 2 LNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQ-ARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCC-GGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC-HHHEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 69899999819-999989996288438999999999999956999-55789996869999999999998537
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=97.04 E-value=0.0026 Score=34.03 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHC------CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 2204999999999850------6989994696069999999999999996189995899991786579999999998709
Q 000380 57 QIARKYQLELCKKAME------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG 130 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~ 130 (1601)
+.|.--|-++++.+.+ ++.++..-||||||++...++... ++.+|+|+|+..++.|+++.++.+++
T Consensus 10 ~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~--------~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 10 YEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV--------NKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp SCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH--------TCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 8999988899999999986599858996778748999999999973--------99989994899999999999998748
Q ss_pred CCEEEEE
Q ss_conf 8199984
Q 000380 131 FKVRTFC 137 (1601)
Q Consensus 131 l~v~~~~ 137 (1601)
-....+.
T Consensus 82 ~~~v~~f 88 (413)
T d1t5la1 82 HNAVEYF 88 (413)
T ss_dssp TSEEEEE
T ss_pred CCCEEEC
T ss_conf 7745432
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.00 E-value=0.0017 Score=35.28 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 0499999999985069899946960699999999999999961899958999917865799999999987
Q 000380 59 ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEES 128 (1601)
Q Consensus 59 ~R~yQ~e~~~~al~~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~ 128 (1601)
+.+=|.++++. ....++|.++-|||||.+++-.+..+......+ ..+++++++++..+......+...
T Consensus 12 L~~eQ~~~v~~-~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~-p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 12 LNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVA-PWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp SCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCC-GGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC-HHHEEEEECCHHHHHHHHHHHHHH
T ss_conf 78999999829-999989995298668999999999999808998-789375766498999899999862
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.002 Score=34.84 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=66.4
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHHHHHCC-CEEEEECHHHHHHHHHCCCCCCCCEE
Q ss_conf 995899991786579999999998709-8199984798767743218863036-70999849999998821666865152
Q 000380 104 QKSICIFLAPTVALVQQQAKVIEESIG-FKVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIA 181 (1601)
Q Consensus 104 ~~k~vlvLvPt~~Lv~Qq~~~l~~~~~-l~v~~~~G~~~~~~~~~~w~~~~~~-~~ViV~Tpq~Ll~~l~~~~~~l~~i~ 181 (1601)
.+..++|++|.+.-.....+.+++.++ +++..++|.++..+......+...+ .+|+|+| ..+.. -++..+.+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~T-----tvIEv-GiDvpnA~ 103 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIET-GIDIPTAN 103 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES-----STTGG-GSCCTTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEE-----HHHHH-CCCCCCCC
T ss_conf 6995999971752126688888874773379999722688889999999982986268875-----53440-46899876
Q ss_pred EEEEECCCCCC
Q ss_conf 99996576443
Q 000380 182 LLIFDECHHAQ 192 (1601)
Q Consensus 182 liViDEaH~~~ 192 (1601)
++|+..|++..
T Consensus 104 ~iiI~~a~rfG 114 (211)
T d2eyqa5 104 TIIIERADHFG 114 (211)
T ss_dssp EEEETTTTSSC
T ss_pred EEEEECCHHCC
T ss_conf 99871300033
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.0081 Score=30.99 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 78888999999995313589804999933241699999999950001134311477204787768999999999987249
Q 000380 404 FFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSG 483 (1601)
Q Consensus 404 ~~s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g 483 (1601)
.-|+|...-....... ...+.++++.+.+..-+...+..++.....-++. +.-+|+ +++.++|.++..+.++|
T Consensus 113 vGSGKT~Va~~a~~~~-~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~---v~~l~~---~~~~~~r~~~~~~~~~g 185 (264)
T d1gm5a3 113 VGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIH---VALLIG---ATTPSEKEKIKSGLRNG 185 (264)
T ss_dssp SSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCC---EEECCS---SSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHH-HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCC---CEEECC---CCCHHHHHHHHHHHHCC
T ss_conf 3556659999999998-8513550587404766578999998862012312---111011---01369999999999779
Q ss_pred CCCEEEEE-CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 93299980-554358568886679970799899899998604789997099999
Q 000380 484 ELNLLVAT-KVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLV 536 (1601)
Q Consensus 484 ~~~iLVaT-~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vilv 536 (1601)
+.+++|+| +++.+.+.+.+..+||.=.- .--.|-||.+-...+..-.++++
T Consensus 186 ~~~iiIGThsl~~~~~~f~~LglviiDEq--H~fgv~Qr~~l~~~~~~~~~l~~ 237 (264)
T d1gm5a3 186 QIDVVIGTHALIQEDVHFKNLGLVIIDEQ--HRFGVKQREALMNKGKMVDTLVM 237 (264)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEESC--CCC-----CCCCSSSSCCCEEEE
T ss_pred CCCEEEEEHHHHCCCCCCCCCCEEEECCC--CCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 97999965388548987455622563242--10024347999971869998999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.09 E-value=0.023 Score=28.09 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred HHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHH-H-HHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999850----69899946960699999999999999961899958999917865-7-9999999998709819998
Q 000380 63 QLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVA-L-VQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 63 Q~e~~~~al~----~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~-L-v~Qq~~~l~~~~~l~v~~~ 136 (1601)
|.+.+..+.+ .+.|+..|.|+|||-+|..+...+... .....-++++.|... . ++| .+.+.++
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~--~~~h~D~~~i~~~~~~I~Id~-IR~i~~~-------- 70 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKF--PPKASDVLEIDPEGENIGIDD-IRTIKDF-------- 70 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTS--CCCTTTEEEECCSSSCBCHHH-HHHHHHH--------
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCHHH-HHHHHHH--------
T ss_conf 78999999966998559988989988899999999998434--567998899807767899899-9999999--------
Q ss_pred ECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 47987677432188630367099984999999882166686515299996576443348974999999872999899988
Q 000380 137 CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPR 216 (1601)
Q Consensus 137 ~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~~~p~ 216 (1601)
+.... .....+.+|+||||.+. ....+.+++.+-.+. ...+
T Consensus 71 ---------------------------------~~~~~-~~~~~KviIId~ad~l~---~~aqNaLLK~LEEPp--~~t~ 111 (198)
T d2gnoa2 71 ---------------------------------LNYSP-ELYTRKYVIVHDCERMT---QQAANAFLKALEEPP--EYAV 111 (198)
T ss_dssp ---------------------------------HTSCC-SSSSSEEEEETTGGGBC---HHHHHHTHHHHHSCC--TTEE
T ss_pred ---------------------------------HHHCC-CCCCCEEEEEECCCCCC---HHHHHHHHHHHHCCC--CCCE
T ss_conf ---------------------------------96175-45898799994731036---666647888773789--8852
Q ss_pred EEEEECCC
Q ss_conf 99981345
Q 000380 217 IFGMTASP 224 (1601)
Q Consensus 217 ilgLTATP 224 (1601)
++..|..+
T Consensus 112 fiLit~~~ 119 (198)
T d2gnoa2 112 IVLNTRRW 119 (198)
T ss_dssp EEEEESCG
T ss_pred EEECCCCH
T ss_conf 22206995
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.011 Score=30.26 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCEEEEECHHHHHHHHHCCCCCCCCEEE
Q ss_conf 995899991786579999999998709819998479876774321886303-6709998499999988216668651529
Q 000380 104 QKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIAL 182 (1601)
Q Consensus 104 ~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~-~~~ViV~Tpq~Ll~~l~~~~~~l~~i~l 182 (1601)
.+.++++.|+++.-+...++.+++. ++++..++|+++...+.....+... ..+|+|+| +.+..| ++..++++
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~-Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT-----~v~~~G-iDip~V~~ 102 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEH-GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLREG-LDIPEVSL 102 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCTT-CCCTTEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE-----EEEEEE-CCCCCCCE
T ss_conf 5983899982303799999999865-9725898615541889999999977986999963-----564211-36777738
Q ss_pred EEEECCCCC
Q ss_conf 999657644
Q 000380 183 LIFDECHHA 191 (1601)
Q Consensus 183 iViDEaH~~ 191 (1601)
+|+=.++..
T Consensus 103 Vi~~~~~~~ 111 (174)
T d1c4oa2 103 VAILDADKE 111 (174)
T ss_dssp EEETTTTSC
T ss_pred EEEECCCCC
T ss_conf 998036544
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.033 Score=27.17 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 88889999999953135898049999332416999999999500011343114772047877689999999999872499
Q 000380 405 FSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGE 484 (1601)
Q Consensus 405 ~s~K~~~L~~iL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~g~~~~~~~~r~~vl~~Fr~g~ 484 (1601)
-|+|...-........ ..+.++++.+++..-+...+..+++... .+.. .+.-+|+ ..+..++.++.+...+|+
T Consensus 86 GsGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La~Q~~~~~~~~~~--~~~~-~v~~l~~---~~~~~~~~~~~~~~~~g~ 158 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFA--NWPV-RIEMISR---FRSAKEQTQILAEVAEGK 158 (233)
T ss_dssp CTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHST--TTTC-CEEEEST---TSCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHHHH--HCCC-EEEECCC---CCCCHHHHHHHHHHHCCC
T ss_conf 8772899999999999-7689569974688767999999999872--4797-7976357---653126999999996799
Q ss_pred CCEEEEEC-CCCCCCCCCCCCEEEE
Q ss_conf 32999805-5435856888667997
Q 000380 485 LNLLVATK-VGEEGLDIQTCCLVIR 508 (1601)
Q Consensus 485 ~~iLVaT~-vleeGIDip~~~~VI~ 508 (1601)
.+++|.|. ++...+.+++..+||.
T Consensus 159 ~~iviGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 159 IDILIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEEEHHHHCCCCCCCCCCCEEE
T ss_conf 7889742023306776555463022
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.027 Score=27.70 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHC-------CC-EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999850-------69-8999469606999999999999999618999589999178657999999999870981
Q 000380 61 KYQLELCKKAME-------EN-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132 (1601)
Q Consensus 61 ~yQ~e~~~~al~-------~n-~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~ 132 (1601)
+||.++++...+ .+ .++..|.|+|||..|..++..+.- ..+...... -. ...+..+.......
T Consensus 5 Pw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~--~~~~~~~~~---~~----~~~~~~i~~~~~~~ 75 (207)
T d1a5ta2 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC--QQPQGHKSC---GH----CRGCQLMQAGTHPD 75 (207)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC--SSCBTTBCC---SC----SHHHHHHHHTCCTT
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCCCCC---CC----CCHHHHHHHCCCCC
T ss_conf 1219999999999985996737988899987599999999982101--012321223---34----20155654303431
Q ss_pred EEEEECCCCC-CCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998479876-774321886303670999849999998821666865152999965764433489749999998729998
Q 000380 133 VRTFCGGSKR-LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI 211 (1601)
Q Consensus 133 v~~~~G~~~~-~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~ 211 (1601)
+..+..+... ....... ..+...+... -...+..++|+||+|.+. ....+.+++.+-.+.
T Consensus 76 ~~~~~~~~~~~~i~~~~i--------------r~l~~~~~~~-~~~~~~kviIide~d~l~---~~a~n~Llk~lEep~- 136 (207)
T d1a5ta2 76 YYTLAPEKGKNTLGVDAV--------------REVTEKLNEH-ARLGGAKVVWVTDAALLT---DAAANALLKTLEEPP- 136 (207)
T ss_dssp EEEECCCTTCSSBCHHHH--------------HHHHHHTTSC-CTTSSCEEEEESCGGGBC---HHHHHHHHHHHTSCC-
T ss_pred CCHHHHHHCCCCCCCCHH--------------HHHHHHHHHC-CCCCCCCEEEECHHHHHH---HHHHHHHHHHHHHHC-
T ss_conf 101234313453332114--------------6776532110-035764047731344200---001499999998501-
Q ss_pred CCCCEEEEEECC
Q ss_conf 999889998134
Q 000380 212 MKVPRIFGMTAS 223 (1601)
Q Consensus 212 ~~~p~ilgLTAT 223 (1601)
...+++..|-.
T Consensus 137 -~~~~fIl~t~~ 147 (207)
T d1a5ta2 137 -AETWFFLATRE 147 (207)
T ss_dssp -TTEEEEEEESC
T ss_pred -CCCEEEEEECC
T ss_conf -11104553068
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.54 E-value=0.028 Score=27.58 Aligned_cols=58 Identities=19% Similarity=0.056 Sum_probs=39.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8999469606999999999999999618999589999178-6579999999998709819998
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT-VALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt-~~Lv~Qq~~~l~~~~~l~v~~~ 136 (1601)
+.++.|||+|||-...-++..+ ....++..++-+.| +.=+.+|.+.+.+.+++.+...
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~----~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~ 67 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYY----QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQG 67 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH----HTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEEC
T ss_conf 9998999998899999999999----9779907999813666540266764054568238961
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0039 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHC-----CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 4999999999850-----698999469606999999999999
Q 000380 60 RKYQLELCKKAME-----ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 60 R~yQ~e~~~~al~-----~n~Ii~~pTGsGKTlia~l~i~~l 96 (1601)
++...+.+..+.. .+.++..|.|+|||.++-.++.++
T Consensus 16 ~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 16 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 399999999999769987859988999998899999999762
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.27 E-value=0.018 Score=28.76 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9999999850----698999469606999999999999
Q 000380 63 QLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 63 Q~e~~~~al~----~n~Ii~~pTGsGKTlia~l~i~~l 96 (1601)
..+.+..+++ .+.|+..|.|+|||.+|-.++.++
T Consensus 23 ~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 23 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99999999986998749998899987054699999997
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.035 Score=27.01 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=57.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCEEEEECHHHHHHHHHCCCCCCCCEE
Q ss_conf 9995899991786579999999998709819998479876774321886303-670999849999998821666865152
Q 000380 103 PQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIA 181 (1601)
Q Consensus 103 ~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~-~~~ViV~Tpq~Ll~~l~~~~~~l~~i~ 181 (1601)
..+++++|-++|+.-+...+..++.. ++.+..++|+.....+......... ..+|+|+| +++..| +++.+++
T Consensus 28 ~~~~~~IIF~~t~~~~~~l~~~l~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT-----d~~~~G-iD~p~v~ 100 (200)
T d1oywa3 28 QRGKSGIIYCNSRAKVEDTAARLQSK-GISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-----VAFGMG-INKPNVR 100 (200)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----TTSCTT-TCCTTCC
T ss_pred CCCCCEEEEEEEEHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-----CHHHHC-CCCCCCC
T ss_conf 69998899982231167764432447-8535775388717778999988741343078740-----234531-6887888
Q ss_pred EEEEEC
Q ss_conf 999965
Q 000380 182 LLIFDE 187 (1601)
Q Consensus 182 liViDE 187 (1601)
+||.=+
T Consensus 101 ~VI~~~ 106 (200)
T d1oywa3 101 FVVHFD 106 (200)
T ss_dssp EEEESS
T ss_pred EEEECC
T ss_conf 999877
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=95.25 E-value=0.053 Score=25.88 Aligned_cols=71 Identities=24% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHC-----CC-EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 204999999999850-----69-899946960699999999999999961899958999917865799999999987098
Q 000380 58 IARKYQLELCKKAME-----EN-IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131 (1601)
Q Consensus 58 ~~R~yQ~e~~~~al~-----~n-~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l 131 (1601)
.|+.-|-++++.+.+ +. ..+..-+||+|+++...++... ++.++||+|+...+.|+++.++.+++-
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~--------~rp~LvVt~~~~~A~~l~~dL~~~l~~ 79 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL--------GRPALVLAPNKILAAQLAAEFRELFPE 79 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--------TCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 999877999999999986699737985688878999999999985--------999999918999999999999986476
Q ss_pred CEEEE
Q ss_conf 19998
Q 000380 132 KVRTF 136 (1601)
Q Consensus 132 ~v~~~ 136 (1601)
....+
T Consensus 80 ~~v~~ 84 (408)
T d1c4oa1 80 NAVEY 84 (408)
T ss_dssp SEEEE
T ss_pred CCEEE
T ss_conf 64556
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.055 Score=25.75 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=52.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 8999469606999999999999999618999589999178-657999999999870981999847987677432188630
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT-VALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI 153 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt-~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~ 153 (1601)
+.++.|||+|||-...-++..+ .....+..++-+.| +.=+.+|.+.+.+.+++.+........ +.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~----~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d-------~~--- 77 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQF----EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD-------SA--- 77 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH----HTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCC-------HH---
T ss_pred EEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-------HH---
T ss_conf 9998999999899999999999----977994799823213666120455543433886211356877-------99---
Q ss_pred CCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 36709998499999988216668651529999657644
Q 000380 154 DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHA 191 (1601)
Q Consensus 154 ~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~ 191 (1601)
.++.+.+.. ....+.++|++|=+=+.
T Consensus 78 ----------~~l~~~~~~--a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 78 ----------SVIFDAIQA--AKARNIDVLIADTAGRL 103 (211)
T ss_dssp ----------HHHHHHHHH--HHHTTCSEEEECCCCCG
T ss_pred ----------HHHHHHHHH--HHHCCCCEEEECCCCCC
T ss_conf ----------999999999--98769988996568876
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=95.01 E-value=0.032 Score=27.24 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=62.5
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCEEEEECHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 95899991786579999999998709819998479876774321886303-67099984999999882166686515299
Q 000380 105 KSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIALL 183 (1601)
Q Consensus 105 ~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~-~~~ViV~Tpq~Ll~~l~~~~~~l~~i~li 183 (1601)
+.++++.++++.-+...+..++.. ++++..++|+++...+.......-. ..+|+|+| +.+.+| ++..+++++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~-g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT-----dv~~rG-iDip~v~~V 103 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEA-GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLREG-LDIPEVSLV 103 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTT-TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES-----CCCSSS-CCCTTEEEE
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-----HHHHCC-CCCCCCCEE
T ss_conf 982899961034667888878767-9404674178638899999999978998889762-----477713-899997889
Q ss_pred EEECCCCC
Q ss_conf 99657644
Q 000380 184 IFDECHHA 191 (1601)
Q Consensus 184 ViDEaH~~ 191 (1601)
|.-++..-
T Consensus 104 I~~d~p~~ 111 (181)
T d1t5la2 104 AILDADKE 111 (181)
T ss_dssp EETTTTSC
T ss_pred EEECCCCC
T ss_conf 99569964
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.072 Score=25.02 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCEEEEECHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99589999178657999999999870981999847987677432188630-36709998499999988216668651529
Q 000380 104 QKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIAL 182 (1601)
Q Consensus 104 ~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~-~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~l 182 (1601)
+.+++++-|.++.-+.+.++.+... ++++..++|+.+...+....+... ...+|+|+| +.+.+| +++.++++
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T-----dv~~rG-iDi~~v~~ 98 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRND-KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLARG-IDVQQVSL 98 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTTT-CCCCSCSE
T ss_pred CCCCEEEEEEEECHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-----CCCCCC-CCCCCCEE
T ss_conf 9885899998870699999888654-9559995167752367789998764036456515-----623446-55777508
Q ss_pred EEEECCC
Q ss_conf 9996576
Q 000380 183 LIFDECH 189 (1601)
Q Consensus 183 iViDEaH 189 (1601)
+|.=+.-
T Consensus 99 VI~~d~P 105 (162)
T d1fuka_ 99 VINYDLP 105 (162)
T ss_dssp EEESSCC
T ss_pred EEEECCC
T ss_conf 9993451
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.70 E-value=0.074 Score=24.93 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 99999999850----698999469606999999999999
Q 000380 62 YQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 62 yQ~e~~~~al~----~n~Ii~~pTGsGKTlia~l~i~~l 96 (1601)
...+.+..+++ .+.++..|.|+|||.++-.++.++
T Consensus 31 ~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 31 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999999985999769997899974879999999998
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.00 E-value=0.016 Score=29.07 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 069899946960699999999999
Q 000380 72 EENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 72 ~~n~Ii~~pTGsGKTlia~l~i~~ 95 (1601)
..|+++..|||+|||++|-.++..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 564799899998899999999987
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.12 Score=23.56 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCEEEEECHHHHHHHHHCCCCCCCCEEE
Q ss_conf 995899991786579999999998709819998479876774321886303-6709998499999988216668651529
Q 000380 104 QKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILLYCLYHRFIKMELIAL 182 (1601)
Q Consensus 104 ~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~-~~~ViV~Tpq~Ll~~l~~~~~~l~~i~l 182 (1601)
...++++.|+++.-+...++.+++ .+.++..++|+++...+......... ..+|+|+| +.+.. .+++..+++
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T-----~~~~~-Gid~~~~~~ 98 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFGR-GMDIERVNI 98 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCCST-TCCGGGCSE
T ss_pred CCCEEEEEEEEEECCHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC-----CCCCC-HHHCCCCHH
T ss_conf 998199998034411013334301-24443211122210222211221112221144123-----30110-012044134
Q ss_pred EEEECCCC
Q ss_conf 99965764
Q 000380 183 LIFDECHH 190 (1601)
Q Consensus 183 iViDEaH~ 190 (1601)
+|+=+.-.
T Consensus 99 vi~~~~p~ 106 (168)
T d1t5ia_ 99 AFNYDMPE 106 (168)
T ss_dssp EEESSCCS
T ss_pred HHHHHCCC
T ss_conf 43221132
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.52 E-value=0.047 Score=26.19 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=20.9
Q ss_pred HHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
Q ss_conf 999999850--698999469606999999999999999618999589999178657
Q 000380 64 LELCKKAME--ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 64 ~e~~~~al~--~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~L 117 (1601)
.+.+..+.+ +|++++.+||||||-..-.++ . .-++..+++.+-.+.+|
T Consensus 156 ~~~l~~~v~~~~nili~G~tgSGKTT~l~al~----~--~i~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 156 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM----E--FIPKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSSHHHHHHHHG----G--GSCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH----H--HCCCCCCEEECCCHHHH
T ss_conf 99999999837888999403566257899986----5--30145623311322655
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.48 E-value=0.13 Score=23.42 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCE-EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 698-9994696069999999999999996189995899991--786579999999998709819998479
Q 000380 73 ENI-IVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLA--PTVALVQQQAKVIEESIGFKVRTFCGG 139 (1601)
Q Consensus 73 ~n~-Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLv--Pt~~Lv~Qq~~~l~~~~~l~v~~~~G~ 139 (1601)
+++ +++.|||+|||-....++..+.. . ++++.+++ ..+.-+.+|.+.+.+.+++.+......
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~----~-g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~ 74 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG----K-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 74 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH----T-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH----C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 868999899999889999999999997----7-9927999544346408888999998628863111244
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.13 Score=23.37 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 999999999850----698999469606999999999999
Q 000380 61 KYQLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYEL 96 (1601)
Q Consensus 61 ~yQ~e~~~~al~----~n~Ii~~pTGsGKTlia~l~i~~l 96 (1601)
+-..+.+..+++ .+.+++.|+|+|||..+-+++.++
T Consensus 20 ~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 20 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999999976999859998899877558999999985
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.41 E-value=0.13 Score=23.35 Aligned_cols=58 Identities=28% Similarity=0.216 Sum_probs=38.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899946960699999999999999961899958999917-86579999999998709819998
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP-TVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvP-t~~Lv~Qq~~~l~~~~~l~v~~~ 136 (1601)
++++.|||+|||-...-++..+. . ...+..++-+. .+.=+.+|.+.+.+.+++.+...
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~---~-~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~ 72 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFV---D-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISH 72 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH---H-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---H-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99989999988999999999999---7-79906999601334204678887764327641036
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.13 Score=23.33 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=58.4
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCEEEEECHHHHHHHHHCCCCCCCCEE
Q ss_conf 999589999178657999999999870981999847987677432188630-3670999849999998821666865152
Q 000380 103 PQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIA 181 (1601)
Q Consensus 103 ~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~-~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~ 181 (1601)
.+..++++-|+++.-+...+..++.. ++++..++|+.+...+........ ...+|+|+| +.+.+| +++..++
T Consensus 30 ~~~~k~iVF~~~~~~~~~l~~~L~~~-g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~T-----d~~~~G-id~~~v~ 102 (171)
T d1s2ma2 30 LQINQAIIFCNSTNRVELLAKKITDL-GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLLTRG-IDIQAVN 102 (171)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHH-TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCSSSS-CCCTTEE
T ss_pred CCCCCEEEEEEEEEHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH-----HHHHHC-CCCCEEE
T ss_conf 89876599972241356767765013-3443334333211456655321136863110120-----176541-0466248
Q ss_pred EEEEECCCC
Q ss_conf 999965764
Q 000380 182 LLIFDECHH 190 (1601)
Q Consensus 182 liViDEaH~ 190 (1601)
++|.=++..
T Consensus 103 ~VI~~d~p~ 111 (171)
T d1s2ma2 103 VVINFDFPK 111 (171)
T ss_dssp EEEESSCCS
T ss_pred EEEECCCCC
T ss_conf 999648760
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.97 E-value=0.14 Score=23.28 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHH-----C----CC----EEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 220499999999985-----0----69----89994696069999999999999996
Q 000380 57 QIARKYQLELCKKAM-----E----EN----IIVYLGTGCGKTHIAVLLIYELAHLI 100 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al-----~----~n----~Ii~~pTGsGKTlia~l~i~~l~~~~ 100 (1601)
..-|+-|.+.+..++ + .| .+++.|+|+|||.++-.++..+....
T Consensus 18 ~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~ 74 (287)
T d1w5sa2 18 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA 74 (287)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 887899999999999999974998888534899678999899999999999987541
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.16 Score=22.85 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=66.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 89994696069999999999999996189995899991786579999999998709819998479876774321886303
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID 154 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~ 154 (1601)
..+..+....|.-.-.-++ .. ....++++-|+++.-+...++.++.. ++++..++|+.+...+.......-.
T Consensus 11 ~~v~v~~~~~K~~~L~~ll---~~----~~~~k~iiF~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~fk~ 82 (168)
T d2j0sa2 11 FFVAVEREEWKFDTLCDLY---DT----LTITQAVIFCNTKRKVDWLTEKMREA-NFTVSSMHGDMPQKERESIMKEFRS 82 (168)
T ss_dssp EEEEESSTTHHHHHHHHHH---HH----HTSSEEEEECSSHHHHHHHHHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHH---HH----CCCCCEEEEEEEHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999668699999999999---84----78776399960588878888776630-4431333112257899999999863
Q ss_pred -CCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf -6709998499999988216668651529999657
Q 000380 155 -QYEVLVMIPQILLYCLYHRFIKMELIALLIFDEC 188 (1601)
Q Consensus 155 -~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEa 188 (1601)
..+|+|+| +.+.+| +++.+++++|.=.+
T Consensus 83 g~~~iLv~T-----d~~~rG-iDi~~v~~VIn~d~ 111 (168)
T d2j0sa2 83 GASRVLIST-----DVWARG-LDVPQVSLIINYDL 111 (168)
T ss_dssp TSSCEEEEC-----GGGSSS-CCCTTEEEEEESSC
T ss_pred CCCCEEECC-----CHHCCC-CCCCCCCEEEEECC
T ss_conf 884077414-----410056-55357656899337
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.48 E-value=0.18 Score=22.51 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=42.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 89994696069999999999999996189995899991786579999999998709819998479876774321886303
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID 154 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~ 154 (1601)
++++.|+|+|||+.+.....++.. .+..++++ +...+..+....+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------- 86 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKK-----RGYRVIYS-SADDFAQAMVEHLKKG-------------------------- 86 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH-----TTCCEEEE-EHHHHHHHHHHHHHHT--------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CCCCEEEE-CHHHHHHHHHHHHHCC--------------------------
T ss_conf 799888998399999999987446-----76504884-4378799999998716--------------------------
Q ss_pred CCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 67099984999999882166686515299996576443
Q 000380 155 QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192 (1601)
Q Consensus 155 ~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~ 192 (1601)
..+-+.+ .+...++|++|+.|.+.
T Consensus 87 -------~~~~~~~-------~~~~~dll~iDDi~~i~ 110 (213)
T d1l8qa2 87 -------TINEFRN-------MYKSVDLLLLDDVQFLS 110 (213)
T ss_dssp -------CHHHHHH-------HHHTCSEEEEECGGGGT
T ss_pred -------CHHHHHH-------HHHHCCCHHHHHHHHHC
T ss_conf -------6266789-------87621301011265505
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.23 Score=21.91 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=52.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 98999469606999999999999999618999589999178657999999999870981999847987677432188630
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI 153 (1601)
Q Consensus 74 n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~ 153 (1601)
..++..|.|+|||..|.+.+.++..... ... .|. .. .+.+..+.......+..+.+.... .
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~--~~~-----~~~-~~-~~~~~~i~~~~~~~~~~~~~~~~~--~-------- 96 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCETG--ITA-----TPC-GV-CDNCREIEQGRFVDLIEIDAASRT--K-------- 96 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCTTC--SCS-----SCC-SC-SHHHHHHHHTCCTTEEEEETTCSS--S--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC--CCC-----CCC-CC-CHHHHHHHCCCCCEEEEECCHHCC--C--------
T ss_conf 5988889987589999999998468556--666-----755-54-247999974798707996112007--8--------
Q ss_pred CCCEEEEECHHHHHHHHHCCCC--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 3670999849999998821666--8651529999657644334897499999987299989998899981
Q 000380 154 DQYEVLVMIPQILLYCLYHRFI--KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMT 221 (1601)
Q Consensus 154 ~~~~ViV~Tpq~Ll~~l~~~~~--~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~~~p~ilgLT 221 (1601)
-+.+.+.+..... ......++|+||+|.+. ....+.+.+.+-.. ....++++.|
T Consensus 97 ---------i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~---~~~q~~Llk~lE~~--~~~~~~il~t 152 (239)
T d1njfa_ 97 ---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---RHSFNALLKTLEEP--PEHVKFLLAT 152 (239)
T ss_dssp ---------HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---HHHHHHHHHHHHSC--CTTEEEEEEE
T ss_pred ---------HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC---HHHHHHHHHHHHCC--CCCEEEEEEC
T ss_conf ---------99999999999746525998799997811089---99999999998568--9886999973
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.33 E-value=0.24 Score=21.71 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCHHHHHHHHHHH
Q ss_conf 2204999999999850----------6989994696069999999999999996189995899-9917865799999999
Q 000380 57 QIARKYQLELCKKAME----------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICI-FLAPTVALVQQQAKVI 125 (1601)
Q Consensus 57 ~~~R~yQ~e~~~~al~----------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vl-vLvPt~~Lv~Qq~~~l 125 (1601)
..=|+.|.+.+..++. .++++..|+|+|||.++-.+... +.......++ +-+.......+....+
T Consensus 18 l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (276)
T d1fnna2 18 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL----YKDKTTARFVYINGFIYRNFTAIIGEI 93 (276)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH----HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH----HHCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 8877999999999999998578988881688898999899999999999----754468857873230011246665456
Q ss_pred HHH
Q ss_conf 987
Q 000380 126 EES 128 (1601)
Q Consensus 126 ~~~ 128 (1601)
...
T Consensus 94 ~~~ 96 (276)
T d1fnna2 94 ARS 96 (276)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 776
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.67 E-value=0.1 Score=24.11 Aligned_cols=23 Identities=43% Similarity=0.421 Sum_probs=19.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 69899946960699999999999
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~ 95 (1601)
++++++.|||+|||++|-.++..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.53 E-value=0.31 Score=21.05 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 69899946960699999999999
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~ 95 (1601)
.+++++.|+|+|||..|-.++.+
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 74898799997388999999850
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.26 E-value=0.42 Score=20.19 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=51.0
Q ss_pred HHHHHHC-------CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999850-------698999469606999999999999999618999589999178657999999999870981999847
Q 000380 66 LCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCG 138 (1601)
Q Consensus 66 ~~~~al~-------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G 138 (1601)
.+..++. +=+.++.|.|+|||.+++..+...+. .+..++|+-.--.+-..+++. +++..
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk-----~g~~v~yiDtE~~~~~~~a~~----~Gvd~----- 109 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-----AGGTCAFIDAEHALDPVYARA----LGVNT----- 109 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSCCCCHHHHHH----TTCCG-----
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-----CCCEEEEEECCCCCCHHHHHH----HCCCC-----
T ss_conf 9999756798667547898058765227999999999970-----799899998876589999998----28981-----
Q ss_pred CCCCCCCHHHHHHHHCCCEEEEE---CHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98767743218863036709998---499999988216668651529999657644
Q 000380 139 GSKRLKSHCDWEKEIDQYEVLVM---IPQILLYCLYHRFIKMELIALLIFDECHHA 191 (1601)
Q Consensus 139 ~~~~~~~~~~w~~~~~~~~ViV~---Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~ 191 (1601)
.++++. |.+-.++.+. ..+.-..++++|+|=+-.+
T Consensus 110 -----------------d~i~~~~~~~~E~~~~~~~-~l~~~~~~~liIiDSi~al 147 (268)
T d1xp8a1 110 -----------------DELLVSQPDNGEQALEIME-LLVRSGAIDVVVVDSVAAL 147 (268)
T ss_dssp -----------------GGCEEECCSSHHHHHHHHH-HHHTTTCCSEEEEECTTTC
T ss_pred -----------------HHEEEECCCCHHHHHHHHH-HHHHCCCCCEEEEECCCCC
T ss_conf -----------------2379974899999999999-9986589719999454545
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.22 E-value=0.041 Score=26.55 Aligned_cols=93 Identities=9% Similarity=0.113 Sum_probs=62.3
Q ss_pred CCCEEEEEECCHHHHH--------HHHHHHHHH-C-CCCEEEEECCCCCCCCHHHHHHHHCC-CEEEEECHHHHHHHHHC
Q ss_conf 9958999917865799--------999999987-0-98199984798767743218863036-70999849999998821
Q 000380 104 QKSICIFLAPTVALVQ--------QQAKVIEES-I-GFKVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYH 172 (1601)
Q Consensus 104 ~~k~vlvLvPt~~Lv~--------Qq~~~l~~~-~-~l~v~~~~G~~~~~~~~~~w~~~~~~-~~ViV~Tpq~Ll~~l~~ 172 (1601)
.+..+.|+||.+.=.. ..++.+.+. + +++++.++|.++..++.....+...+ .+|+||| +.+..
T Consensus 28 ~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaT-----tViE~ 102 (206)
T d1gm5a4 28 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST-----TVIEV 102 (206)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS-----SCCCS
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE-----HHHHC
T ss_conf 4998899975144553211013678999999850899728898603659999999999977987899970-----24310
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 666865152999965764433489749999998
Q 000380 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKD 205 (1601)
Q Consensus 173 ~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~ 205 (1601)
-++..+.+.+|+..+++. +-..+.++.-+
T Consensus 103 -GIDip~a~~iii~~a~~f---glsqlhQlrGR 131 (206)
T d1gm5a4 103 -GIDVPRANVMVIENPERF---GLAQLHQLRGR 131 (206)
T ss_dssp -CSCCTTCCEEEBCSCSSS---CTTHHHHHHHT
T ss_pred -CCCCCCCCEEEEECCCCC---CHHHHHHHHHH
T ss_conf -455267848999804886---37788765202
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.00 E-value=0.43 Score=20.16 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHC-------CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 9999850-------69899946960699999999999999961899958999917865799999999
Q 000380 66 LCKKAME-------ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 66 ~~~~al~-------~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l 125 (1601)
.++.++. +=+.++.|.|+|||.+++.++...+. .+..++|+-.--.+..++++.+
T Consensus 47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~-----~g~~~vyIDtE~~~~~e~a~~~ 108 (269)
T d1mo6a1 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGGVAAFIDAEHALDPDYAKKL 108 (269)
T ss_dssp HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH-----TTCEEEEEESSCCCCHHHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-----CCCEEEEEECCCCCCHHHHHHH
T ss_conf 8987556698666336999648874889999999998754-----8988999989766799999980
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.73 E-value=0.46 Score=19.98 Aligned_cols=58 Identities=22% Similarity=0.151 Sum_probs=37.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899946960699999999999999961899958999917-86579999999998709819998
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAP-TVALVQQQAKVIEESIGFKVRTF 136 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvP-t~~Lv~Qq~~~l~~~~~l~v~~~ 136 (1601)
+.++.|||+|||-...-++..+. ....+..++-+. .+.=+..|.+.+.+.+++.+...
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~----~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~ 73 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK----KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 73 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH----HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH----HCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEEC
T ss_conf 99989999998999999999999----779936999720235515678987401468422302
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.99 E-value=0.44 Score=20.07 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=19.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 69899946960699999999999
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~ 95 (1601)
.+++++.|+|+|||..|-.+..+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73898897998788899999998
|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute 2 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.91 E-value=0.24 Score=21.71 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=41.6
Q ss_pred EEEEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 189998003787778989888-9987254565620764458999808831035422334477667743233443221164
Q 000380 889 WFYLVTNIVFEKNGYSPYKDS-DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLP 967 (1601)
Q Consensus 889 ~~y~v~~i~~d~~p~S~~~~~-~~~ty~ey~~~~y~~~l~~~~QPll~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~L~ 967 (1601)
+.|.|.++.+.-.-...|+.+ ...|-.+||. +|++.+.+|+.|.|.+..-. ...++|
T Consensus 55 R~~~I~glt~~~a~~~~F~~dg~~itV~~YF~-~~~~~Lk~p~lPcl~vG~~~---------------------k~~ylP 112 (123)
T d1t2sa_ 55 RVYRVNGLSRAPASSETFEHDGKKVTIASYFH-SRNYPLKFPQLHCLNVGSSI---------------------KSILLP 112 (123)
T ss_dssp EEEEECEEEEEETTTCEEEETTEEEEHHHHHH-HTTCCCSCTTSEEEEEECSS---------------------SEEEEC
T ss_pred CEEEECCCCCCCHHCCEECCCCEEEEHHHHHH-HHCCCCCCCCCCEEEECCCC---------------------CCCEEC
T ss_conf 36998137888632255537991888999999-85954348997679967888---------------------872855
Q ss_pred CCCCCC
Q ss_conf 222232
Q 000380 968 PELCQL 973 (1601)
Q Consensus 968 pelC~~ 973 (1601)
.|+|.+
T Consensus 113 mElc~I 118 (123)
T d1t2sa_ 113 IELCSI 118 (123)
T ss_dssp GGGEEE
T ss_pred HHHEEE
T ss_conf 502786
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.90 E-value=0.51 Score=19.69 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=28.6
Q ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
Q ss_conf 50698999469606999999999999999618999589999178657
Q 000380 71 MEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL 117 (1601)
Q Consensus 71 l~~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~L 117 (1601)
..+|++|..+||+|||.....++..+ ... +..++++=|.-.+
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~~~---~~~--g~~~iiiD~kge~ 90 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAYTG---LLR--GDRMVIVDPNGDM 90 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH---HHT--TCEEEEEEETTHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH---HHC--CCCEEEEECCHHH
T ss_conf 52658999079996899999999999---847--9988999687169
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.17 E-value=0.34 Score=20.82 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=18.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHH
Q ss_conf 6989994696069999999999
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIY 94 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~ 94 (1601)
.|++...|||.|||.+|-.++.
T Consensus 69 ~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 5324418998637899999986
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.06 E-value=0.63 Score=19.11 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=25.5
Q ss_pred HHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 9999999850----6989994696069999999999999
Q 000380 63 QLELCKKAME----ENIIVYLGTGCGKTHIAVLLIYELA 97 (1601)
Q Consensus 63 Q~e~~~~al~----~n~Ii~~pTGsGKTlia~l~i~~l~ 97 (1601)
..+.+..+++ .+.++..|+|+|||..+-.++.++.
T Consensus 20 ~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 20 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999999999869988599989999984999999999970
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=84.50 E-value=0.65 Score=19.03 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 698999469606999999999999999618999589999178
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt 114 (1601)
.-+++..++|+|||..+..++.+.. + .+..++|+.-.
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~~~---~--~~~~~~~is~e 63 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVENAC---A--NKERAILFAYE 63 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH---T--TTCCEEEEESS
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHH---H--HCCCCCEEECC
T ss_conf 4999991899999999999999998---7--23244112126
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=0.7 Score=18.81 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=25.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 698999469606999999999999999618999589999178
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt 114 (1601)
+++++..|.|+|||..+..++..+.. .......+.++.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~----~~~~v~~~~~~~ 39 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS----SGVPVDGFYTEE 39 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH----TTCCCEEEECCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----CCCEEEEEEECC
T ss_conf 69999889997199999999999997----799799998455
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=81.60 E-value=0.87 Score=18.24 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=52.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 89994696069999999999999996189995899991786579999999998709819998479876774321886303
Q 000380 75 IIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID 154 (1601)
Q Consensus 75 ~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l~v~~~~G~~~~~~~~~~w~~~~~ 154 (1601)
.++..|+.||||--.+..+..+. . .+++++++-|...-- . +-.+..-.|..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~---~--~~~kv~~ikp~~D~R---------~-~~~i~s~~g~~-------------- 55 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLE---Y--ADVKYLVFKPKIDTR---------S-IRNIQSRTGTS-------------- 55 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH---H--TTCCEEEEEECCCGG---------G-CSSCCCCCCCS--------------
T ss_pred EEEECCCCCHHHHHHHHHHHHHH---H--CCCCEEEEEECCCCC---------C-CCEEECCCCCE--------------
T ss_conf 99991506789999999999998---7--799589997731342---------4-64477236852--------------
Q ss_pred CCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 6709998499999988216668651529999657644334897499999987
Q 000380 155 QYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206 (1601)
Q Consensus 155 ~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~ 206 (1601)
...+.+....-+++.+.... ...+.+.|.+||||-.. + .+..++...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~-~~~~~dvI~IDE~QFf~---d-~i~~~~~~~ 102 (139)
T d2b8ta1 56 LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD---D-RICEVANIL 102 (139)
T ss_dssp SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC---T-HHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHC-CCCCCCEEEECHHHHCC---H-HHHHHHHHH
T ss_conf 65589526403578887530-16676799961034356---1-588999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=80.80 E-value=0.92 Score=18.07 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 69899946960699999999999999961899958999917865799999999
Q 000380 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI 125 (1601)
Q Consensus 73 ~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l 125 (1601)
+=+++++++|+|||..+..++..+. . ..+.+++|+..--+- .|....+
T Consensus 36 ~l~vi~G~~G~GKT~~~~~la~~~a--~--~~g~~v~~~s~E~~~-~~~~~r~ 83 (277)
T d1cr2a_ 36 EVIMVTSGSGMGKSTFVRQQALQWG--T--AMGKKVGLAMLEESV-EETAEDL 83 (277)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--H--TSCCCEEEEESSSCH-HHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHH--H--HCCCCEEEEEECCCH-HHHHHHH
T ss_conf 0899994799979999999997265--5--336634576401111-3577699
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.70 E-value=0.31 Score=21.05 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 9899946960699999999999
Q 000380 74 NIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 74 n~Ii~~pTGsGKTlia~l~i~~ 95 (1601)
.++++.|+|+|||.+|-.+..+
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998897998899999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=80.42 E-value=0.57 Score=19.39 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 069899946960699999999999
Q 000380 72 EENIIVYLGTGCGKTHIAVLLIYE 95 (1601)
Q Consensus 72 ~~n~Ii~~pTGsGKTlia~l~i~~ 95 (1601)
++++++..+.|+|||-+|-.+...
T Consensus 2 ~k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 974999899999999999999999
|