Citrus Sinensis ID: 000586

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400---
MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG
ccccccccHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEEcccEEEEEEEEccccccHHcHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcEEEEEcccccccEEEEEEEccEEEcccccccccccccEEEEcccccccHHHHccccccHHHccccHHHHHHHHHcccccEEEEEEEcccccEEEEccccccHHHHHHHHHcHHHHccccEEEcccccEEEEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEccccccEEEEEccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccHHHccccccEEEccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHcccccccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEccEEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccc
ccccEEccHHHHHHHHccHHEccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHcHcccccHHHHHHHHHHHHccccccHHHHHHHHcEEEEEccccccHHHHHHEHccccEEEEEEcccccccccEEEEEEcccccHHHHHHHHccHHHHHccHHHHHHHHHHHcccEEEEEEccccEEEEEEccccHHHHHHHHHHHcHHHHHHHccEEccccccEEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccEEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHcccccEEEcccHHHHHHHHHHccccHcccccHHHHHccccHHHHcccccHHHHHHHHccHHHcccHHHHHHHHEHHHHHccccccccHHHHccccccEEEcccccccHHHHcccccccccHHHHHHHHHcccHHHHHccccHHHcccccccccccccccccccEEEEccccEEcEEEEcccccccccHHHcccccccEEEEEcccccccccccccccccHcccccEEEccccccccccccccccccccccccccccccccccccEEEEEccccccEEEccEEEEEEEcccccccccccccccHHcccccccccccccccccccccccccHHHHccccccccccccEcccccccEEEcccccccccEcccccccccccccccccccccccEEEccccccccEcccccEcccEEccccccEEEccccccccccHHHEcccccccccccccccHHHHHHcccccccccccccccccEEEcccccccccccccccccccEEccHccccccccccEEEcccccccccccccccEEEEEEHcccHHcccccHHHHHHHHHccHHHHHHHHccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHcHHHHccccHccccccccccccccccEHHEcccEEEEEEccccEEEEEHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccHHHHHHHHHHHHHHHHccEEEEEEEEcccccccEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHHccccHHHccccEEcHHHHHHHHHccccc
MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKvvddgsgisrdgLVLLGERHAAtsklghladmddatgigtfgfrgealasisdVSLLEIITKahgrpngyrkvmkgskclylgidderkdvgttvvsrdlfynqpvrrkymqsspkkvLHSVKKCVLRIALVhpkvsfkfidmesedellctcssssplALLISSfgiedfsfldevnandgaleisgyisspydsisVKAFQYVYINSRYVCKGPIHKLLNHLAasfdcsdswkanngflkgkrsksqacpayllnlrcphslydltfdplkthvvfkdwEPVLAFIERAIRSAWMKKIahdsfdvdmledaelplessrfqshqssthlhssplknlAKQRDHMFHKECERItfqefqkdpvelaeentemeffsqpkhssslldgsfaeclpivppkidhrvwtiesswfqdhqpsrhlfspplenlkkEGDHLFRKECeritfgdaekdpaelqeentemeyvpqpkysfglsdgsfakclpivpwkidrhawtiessrfqyhqssphlyssplenlskegdHLFREECEritfgefekhtpelkeenskrelvsqpkyssklldcpfaeclspvlrkidlhgwtsgnrfslkgsyfletcfladgrssipvegdllnsqrgyeylqiepgvsngasgtaspldkdefsnefevskdikkplrlscfsqgspplggplfsggeercesstgcfkykrkrkRVCYDKRMDILeadfsnqsfdsfsrtplqdeascsqhlprlstagditagFDLMSRAslnlfpshaepftketnflsdsiepvgnsvsdykalnsvwcskisdpfpqgaswndghfiynnaleghsilgegtscgqladteenykfdydsklrrsnqekcttarsglrfeyydnsSEDFCKYLqehdpcnkfsrehsdvpfdktdWLCSVLSSieydnpetqrykfrnhncepnpihkelsrrshsappfhrhkrryislnccsveagksnahtlhcaknspeagafkhlqqssgvcnanvkpsseeedfrpdfkiesstildleethkaenfklslcphahlgaqaegtsiisgtkwrnghpqttnnniscdihnqdnilDISSGllhltgeffipdsinksCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLsgegksvayldaeqelvLPEIGYQLLQNFAEQIKDwgwicnihtqgsrsfnkNLNLLQRQITVITLLAvpcifgvnlsdVDLLEFLQQLadtdgssttppsvLRVLNSkacrgaimfgdsllpSECALIVEELKQTSlcfqcahgrpttvpLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG
mgtinrlpeavrntvrsgtvlfDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATsklghladmdDATGIGTFGFRGEALASISDVSLLEIITkahgrpngyrkvmKGSKCLYLGIdderkdvgttvvsrdlfynqpvrrkymqsspkkvlhsVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQshqssthlhssplkNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERitfgdaekdpaELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITfgefekhtpelkeenskrelvsqpkYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGgplfsggeercesstgcfkykrkrkrVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFdydsklrrsnqekcttarsglrfeyYDNSSEDFCKYLQEHDPCNKFSrehsdvpfdKTDWLCSVLSSIEYDNPETQRYKFRNHNCEpnpihkelsrrshsappfhrhkrRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKpsseeedfrpdfKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAdtdgssttppsVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHrgeislkrasrrlltgvrg
MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCssssplallissFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFqshqssthlhssPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCfsqgspplggplfsggEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG
**********VRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDML****************************************CERITF*****************************LDGSFAECLPIVPPKIDHRVWTIESSWFQD**********************F***C**I*************************KYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQY**********************FREECERITF***************************KLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQI*************************************************************TGCFKYKRKRKRVCYDKRMDILEADF*****************************GDITAGFDLMSRASLNLFP**********NFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDY*************TARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDN************************************RRYISLNCCSVEAGK****TL**********************************************L*L****KAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAD*********SVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEI***************
MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMK************************************************************************************************************************************************************************VPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRF********************GDHLFREECERITFGEFEKHTP*********ELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGV***ASGTASPLDKDEFSNEFEVSKDIKKPLRL*CF******L****FSGGEERCES****************DKRMDILEADFSNQSFDSFSRTPLQ***********************LMSRASLNLFPSHAEPFTKETNFLSDSIE**************************GASWNDGHFIYNNALEG*S*********QLADTEENYKFDYDSK********CTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIE***PETQRYKFRNHNC******************FHRHKRRYISLNCCSVE**********CAKNSPEAGAFKHLQQSSGVCNANVKPS*************SSTILDL***********************************************************************************AKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRH************LDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAD*********SVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL***********RGEISLKRASRRLL*****
MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRK**********HSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPL******************LKNLAKQRDHMFHKECERITFQEFQKDPVELAEENT*************LLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHT****************KYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFS*********TGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQ*****************FRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG
*GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDS*********GKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI***********************************************************************************************************IESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSC*********************SSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEA*C***********DITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDY*A****WCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAF*******************************************************************************************************************SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLT****
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MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1403 2.2.26 [Sep-21-2011]
Q9UHC11453 DNA mismatch repair prote yes no 0.239 0.231 0.308 1e-34
A3QAD8631 DNA mismatch repair prote yes no 0.224 0.499 0.325 4e-34
A3CR14647 DNA mismatch repair prote yes no 0.291 0.632 0.280 4e-33
B8E280572 DNA mismatch repair prote yes no 0.229 0.562 0.321 6e-33
Q9CDL1656 DNA mismatch repair prote yes no 0.229 0.490 0.294 1e-32
Q02VS5656 DNA mismatch repair prote yes no 0.311 0.666 0.273 1e-32
Q5FLX4631 DNA mismatch repair prote yes no 0.280 0.624 0.285 3e-32
B8J9F5607 DNA mismatch repair prote yes no 0.230 0.533 0.323 3e-32
A2RP08656 DNA mismatch repair prote yes no 0.311 0.666 0.269 3e-32
Q01QW7660 DNA mismatch repair prote yes no 0.238 0.506 0.307 3e-32
>sp|Q9UHC1|MLH3_HUMAN DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 182/353 (51%), Gaps = 17/353 (4%)

Query: 4   INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGI 63
           I  L   V+  +RSG  +  L + VEEL  NS+DA A  V V V +    V+V+D+G G+
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQVQVIDNGFGM 61

Query: 64  SRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDV-SLLEIITKAHGRP 122
             D +  +G R+  TSK   + D+++      +GFRGEALA+I+D+ S +EI +K +   
Sbjct: 62  GSDDVEKVGNRY-FTSKCHSVQDLENPR---FYGFRGEALANIADMASAVEISSKKNRTM 117

Query: 123 NGYRKVMKGSKCL-YLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCV 181
             + K+ +  K L     D  R   GTTV   +LFY  PVRRK M   P+     V++ +
Sbjct: 118 KTFVKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCM--DPRLEFEKVRQRI 175

Query: 182 LRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEI 241
             ++L+HP +SF   +  S   +L    +    +     +G+     L E++      E+
Sbjct: 176 EALSLMHPSISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLGKSQKLREISFKYKEFEL 235

Query: 242 SGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHL--AASFDC----SDSWKANNGF 295
           SGYISS  ++   K  Q++++N R V +  +HKL++ L    S  C      + +  N  
Sbjct: 236 SGYISS--EAHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSS 293

Query: 296 LKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIR 348
           L+  RS  +    Y++N++C    YD+  +P KT + F++W+ +L  I+  ++
Sbjct: 294 LR-HRSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVK 345
Probably involved in the repair of mismatches in DNA.
Homo sapiens (taxid: 9606)
>sp|A3QAD8|MUTL_SHELP DNA mismatch repair protein MutL OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|A3CR14|MUTL_STRSV DNA mismatch repair protein MutL OS=Streptococcus sanguinis (strain SK36) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|B8E280|MUTL_DICTD DNA mismatch repair protein MutL OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|Q9CDL1|MUTL_LACLA DNA mismatch repair protein MutL OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=mutL PE=3 SV=2 Back     alignment and function description
>sp|Q02VS5|MUTL_LACLS DNA mismatch repair protein MutL OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|Q5FLX4|MUTL_LACAC DNA mismatch repair protein MutL OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|B8J9F5|MUTL_ANAD2 DNA mismatch repair protein MutL OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|A2RP08|MUTL_LACLM DNA mismatch repair protein MutL OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|Q01QW7|MUTL_SOLUE DNA mismatch repair protein MutL OS=Solibacter usitatus (strain Ellin6076) GN=mutL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1403
2960886481230 unnamed protein product [Vitis vinifera] 0.573 0.654 0.457 1e-173
3594770801218 PREDICTED: uncharacterized protein LOC10 0.573 0.660 0.452 1e-170
2555614271137 conserved hypothetical protein [Ricinus 0.511 0.630 0.453 1e-151
3564953091208 PREDICTED: uncharacterized protein LOC10 0.529 0.615 0.409 1e-139
3574841631293 MutL DNA mismatch repair protein [Medica 0.557 0.604 0.397 1e-134
3341871921169 DNA mismatch repair protein MLH3 [Arabid 0.365 0.438 0.461 1e-119
4494569551238 PREDICTED: uncharacterized protein LOC10 0.348 0.394 0.464 1e-115
2978023961119 hypothetical protein ARALYDRAFT_328199 [ 0.436 0.546 0.414 1e-114
33675701151 putative protein [Arabidopsis thaliana] 0.362 0.442 0.456 1e-113
4002020591208 mutL-like protein 3 [Hordeum vulgare sub 0.264 0.307 0.517 2e-96
>gi|296088648|emb|CBI37639.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 396/866 (45%), Positives = 501/866 (57%), Gaps = 61/866 (7%)

Query: 570  SSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAE 629
            SSP+E L++E DH    +  +I F +    T E + + +K   V Q   S + LD   ++
Sbjct: 383  SSPMELLTEENDHFSCRKENKIPFQKLRNDTSEFEGQRNKIGFVHQIDSSFQSLDDSPSK 442

Query: 630  CLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEP 689
            C+S V    + H     + F +  + FLE  F     S   VE  +L S  G E L ++ 
Sbjct: 443  CISGVHPHTE-HLELPDDNFFITKNNFLENKFTVLESSFDHVEDKILGSTWGNESLNVDH 501

Query: 690  GVSNGASGTASPLDKDEFSNEFE-VSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESS 748
             + NG S  A   +  EF N  E  SKD KKP+  SC       LG  L S      ES 
Sbjct: 502  DMGNGFS--ALSYNSYEFRNGVEEASKDFKKPILQSC------SLGRSLLSD----WESD 549

Query: 749  TGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITA 808
               F+    R R    +++D       N+SFD F  T  Q+EAS      RL T  ++  
Sbjct: 550  KFEFQIDGLRTR---QRQID------HNKSFDFFPGTAWQEEASSDWPSSRLKTKPEMCT 600

Query: 809  GFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGA 868
            G D MSR SL    ++ E F  E N   DS+E  G   S + +LNS  CS +S    Q  
Sbjct: 601  GLDFMSRDSLKSLSTYRERFAVENNLPPDSVEQSGKFGSGHLSLNSECCSMVSQSLFQTT 660

Query: 869  SWNDGHFIYNNALEGHSILGEGTSCGQLADTEEN-YKFDYD---SKLRRSNQEKCTTARS 924
             W+  HF + N  +G        S     D+E   + F +D   S   + N    +   +
Sbjct: 661  PWDVEHFTHENTPQGGLGSDRNVSYEHFIDSESGGWIFSHDIMPSSSSQENCSSSSCINT 720

Query: 925  GLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWL-----------------C 967
            GL  + Y   S D  + L+E++  N F+  HSD+   +TDWL                 C
Sbjct: 721  GLGLKDYTVPSRDIYRLLKENNLDNIFTPRHSDILSIETDWLYSKSCGKDNNNNRAVPSC 780

Query: 968  SVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLN-CCSVEA 1026
            S+  S      E ++ + R  NC      KE SR SHSAPP +R KR++++LN   ++E+
Sbjct: 781  SIPLSTNIHKDENKKERLRYQNCGQIHASKERSR-SHSAPPIYRGKRKFLALNDHWTMES 839

Query: 1027 GKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDF---RPDFKIESSTILDL 1083
             K +    H A   PE    KH  QSSG CN   KPS  E+     R D K       D+
Sbjct: 840  KKVDVIDSHDAPTFPETDELKHPLQSSGACNQYFKPSFLEDPLFYGRSDMKKMLENEPDM 899

Query: 1084 EETHKAENFKLSLCPHAHLGAQA-------EGTSII-SGTKWRNGHPQTTNNNISCDIHN 1135
            ++    + F+ S C      + +       E T ++ S +KWRN  P+  + + S   ++
Sbjct: 900  DKIQNIDIFRKSQCLPIDDDSYSFKDFTTKEATDLMNSESKWRNNCPKIASGDKSQKFND 959

Query: 1136 QDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAAD 1195
            Q N+LDISSG+LHL G+  IP SI K+CL+DAKVLQQVDKKFIPVVA GTLA+IDQHAAD
Sbjct: 960  QYNVLDISSGILHLAGDSLIPQSITKNCLQDAKVLQQVDKKFIPVVADGTLAIIDQHAAD 1019

Query: 1196 ERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGS 1255
            ERIRLEELR KVLSGE K++ YLDAEQELVLPEIGYQLL  +AEQI++WGWICNIH Q S
Sbjct: 1020 ERIRLEELRQKVLSGEVKTITYLDAEQELVLPEIGYQLLHTYAEQIQNWGWICNIHAQNS 1079

Query: 1256 RSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLN 1315
            RSF KNL+LL ++ TVITLLAVPCI GVNLSDVDLLEFLQQLADTDGSST PPSVLRVLN
Sbjct: 1080 RSFTKNLDLLHKKPTVITLLAVPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLN 1139

Query: 1316 SKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNN 1375
             KACRGAIMFGD+LLPSEC+LIVEELK+TSLCFQCAHGRPTTVPLVNLEALHKQIA+L +
Sbjct: 1140 LKACRGAIMFGDALLPSECSLIVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLGS 1199

Query: 1376 ----SSELWHGLHRGEISLKRASRRL 1397
                S ELWHGL R E+SL+RA+ RL
Sbjct: 1200 GGGGSIELWHGLRRHELSLERAAHRL 1225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477080|ref|XP_002272829.2| PREDICTED: uncharacterized protein LOC100253902 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561427|ref|XP_002521724.1| conserved hypothetical protein [Ricinus communis] gi|223539115|gb|EEF40711.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356495309|ref|XP_003516521.1| PREDICTED: uncharacterized protein LOC100788019 [Glycine max] Back     alignment and taxonomy information
>gi|357484163|ref|XP_003612368.1| MutL DNA mismatch repair protein [Medicago truncatula] gi|355513703|gb|AES95326.1| MutL DNA mismatch repair protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|334187192|ref|NP_195277.5| DNA mismatch repair protein MLH3 [Arabidopsis thaliana] gi|332661126|gb|AEE86526.1| DNA mismatch repair protein MLH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449456955|ref|XP_004146214.1| PREDICTED: uncharacterized protein LOC101213777 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297802396|ref|XP_002869082.1| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp. lyrata] gi|297314918|gb|EFH45341.1| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3367570|emb|CAA20022.1| putative protein [Arabidopsis thaliana] gi|7270503|emb|CAB80268.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|400202059|gb|AFP73613.1| mutL-like protein 3 [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1403
RGD|13092271442 Mlh3 "mutL homolog 3 (E. coli) 0.238 0.232 0.330 3.5e-54
UNIPROTKB|E2QZJ21424 MLH3 "Uncharacterized protein" 0.242 0.238 0.316 1.8e-52
UNIPROTKB|E1BNK21452 MLH3 "Uncharacterized protein" 0.258 0.25 0.304 5.7e-52
UNIPROTKB|F1S2R61427 MLH3 "Uncharacterized protein" 0.243 0.239 0.301 1e-50
UNIPROTKB|E1C7F31424 LOC100859200 "Uncharacterized 0.240 0.236 0.334 1.1e-49
ZFIN|ZDB-GENE-060810-451171 mlh3 "mutL homolog 3 (E. coli) 0.242 0.290 0.313 7.7e-47
UNIPROTKB|Q9UHC11453 MLH3 "DNA mismatch repair prot 0.239 0.231 0.308 2.3e-45
UNIPROTKB|G3V4191275 MLH3 "DNA mismatch repair prot 0.239 0.263 0.308 5.7e-42
DICTYBASE|DDB_G02838831658 mlh3 "MutL DNA mismatch repair 0.138 0.117 0.351 1.4e-39
UNIPROTKB|Q75F21734 AAL093C "AAL093Cp" [Ashbya gos 0.254 0.486 0.297 1.5e-35
RGD|1309227 Mlh3 "mutL homolog 3 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 408 (148.7 bits), Expect = 3.5e-54, Sum P(4) = 3.5e-54
 Identities = 117/354 (33%), Positives = 185/354 (52%)

Query:     4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGI 63
             I  L + V+  +RSG  L  L + VEEL  NS+DA AT V + V +    V+V+D+G G+
Sbjct:     2 IRCLSDEVQAKLRSGLALSSLGQCVEELTLNSIDAEATCVAIRVNMETFQVQVIDNGLGM 61

Query:    64 SRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDV-SLLEIITKAHGRP 122
             + D +  +G R+  TSK   + D+++ T    +GFRGEALASI+D+ S +EI +K     
Sbjct:    62 AGDDVEKVGNRYF-TSKCHSVRDLENPT---FYGFRGEALASIADMASAVEISSKKSTTL 117

Query:   123 NGYRKVMKGSKCLYLGIDD-ERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCV 181
               + K+ +  K L     D  R  VGTTV   +LFY  PVRRK M   P+     V++ V
Sbjct:   118 KTFVKMFQNGKALAAREADLTRPSVGTTVTVYNLFYQFPVRRKSMD--PRLEFEKVRQRV 175

Query:   182 LRIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFGIEDFSFLDEVNANDGALEI 241
               ++L+HP +SF   +  S   +L               +G+     L E++      E 
Sbjct:   176 EALSLMHPSISFSLRNDVSGSMILQLPKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEF 235

Query:   242 SGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAA--SFDC-----SDSWKANNG 294
             +GYISS  ++   K  Q++++N R V +  +HKL++ L    S  C     S S + N+ 
Sbjct:   236 NGYISS--EAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSS 293

Query:   295 FLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIR 348
                  RS S+    Y++N++CP   YD+  +P KT + F++W+ VL  ++  I+
Sbjct:   294 --PRHRSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNWDTVLICVQEGIK 345
GO:0000793 "condensed chromosome" evidence=ISO
GO:0000795 "synaptonemal complex" evidence=ISO;IBA
GO:0001673 "male germ cell nucleus" evidence=IEA;ISO
GO:0003674 "molecular_function" evidence=ND
GO:0003682 "chromatin binding" evidence=IEA;ISO
GO:0003697 "single-stranded DNA binding" evidence=IBA
GO:0005524 "ATP binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0005712 "chiasma" evidence=ISO;IBA
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006298 "mismatch repair" evidence=ISO;IBA
GO:0006974 "response to DNA damage stimulus" evidence=ISO
GO:0007130 "synaptonemal complex assembly" evidence=IEA;ISO
GO:0007131 "reciprocal meiotic recombination" evidence=IBA
GO:0007140 "male meiosis" evidence=IEA;ISO
GO:0007144 "female meiosis I" evidence=IEA;ISO
GO:0008104 "protein localization" evidence=IEA;ISO
GO:0008150 "biological_process" evidence=ND
GO:0016887 "ATPase activity" evidence=IBA
GO:0019237 "centromeric DNA binding" evidence=IEA;ISO
GO:0030983 "mismatched DNA binding" evidence=IEA
GO:0032300 "mismatch repair complex" evidence=IBA
GO:0032390 "MutLbeta complex" evidence=IBA
GO:0032407 "MutSalpha complex binding" evidence=IBA
UNIPROTKB|E2QZJ2 MLH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNK2 MLH3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2R6 MLH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7F3 LOC100859200 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060810-45 mlh3 "mutL homolog 3 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UHC1 MLH3 "DNA mismatch repair protein Mlh3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V419 MLH3 "DNA mismatch repair protein Mlh3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283883 mlh3 "MutL DNA mismatch repair protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q75F21 AAL093C "AAL093Cp" [Ashbya gossypii ATCC 10895 (taxid:284811)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1403
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 2e-69
COG0323638 COG0323, MutL, DNA mismatch repair enzyme (predict 7e-61
PRK00095617 PRK00095, mutL, DNA mismatch repair protein; Revie 6e-46
smart00853140 smart00853, MutL_C, MutL C terminal dimerisation d 3e-24
COG0323638 COG0323, MutL, DNA mismatch repair enzyme (predict 5e-21
cd03486141 cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transdu 1e-20
cd00782122 cd00782, MutL_Trans, MutL_Trans: transducer domain 1e-18
PRK00095617 PRK00095, mutL, DNA mismatch repair protein; Revie 3e-17
pfam08676144 pfam08676, MutL_C, MutL C terminal dimerisation do 1e-12
pfam01119119 pfam01119, DNA_mis_repair, DNA mismatch repair pro 9e-11
cd03482123 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transdu 2e-10
cd00329107 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer 3e-09
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 1e-07
cd03485132 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_ 1e-05
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 2e-04
cd03484142 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_ 5e-04
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 0.003
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information 
 Score =  235 bits (602), Expect = 2e-69
 Identities = 115/334 (34%), Positives = 159/334 (47%), Gaps = 27/334 (8%)

Query: 2   GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDG 60
            TI  LP  + N + +G V+     VV+ELV NS+DAGAT++ V +       ++V D+G
Sbjct: 1   MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNG 60

Query: 61  SGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHG 120
           SGI ++ L L  ERH ATSK+    D+     I T GFRGEALASIS VS L I TK   
Sbjct: 61  SGIDKEDLPLACERH-ATSKIQSFEDL---ERIETLGFRGEALASISSVSRLTITTK-TS 115

Query: 121 RPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKC 180
             +G          +   I    + VGTTV  RDLFYN PVRRK++  SPKK    +   
Sbjct: 116 AADGLAYQALLEGGMIESIKPAPRPVGTTVEVRDLFYNLPVRRKFL-KSPKKEFRKILDV 174

Query: 181 VLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISS-FGIEDFSFLDEVNAN-DGA 238
           + R AL+HP +SF       +   L T  + S     I S FG      L  ++   D  
Sbjct: 175 LQRYALIHPDISFSLTHDGKKVLQLSTKPNQSTKENRIRSVFGTAVLRKLIPLDEWEDLD 234

Query: 239 LEISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLK 297
           L++ G+IS P         +Q+++IN R V    + K +  +   +             K
Sbjct: 235 LQLEGFISQPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEY-----------LPK 283

Query: 298 GKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHV 331
           G+       P ++LNL     L D+   P K  V
Sbjct: 284 GQY------PVFVLNLEIDPELVDVNVHPDKKEV 311

All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 312
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|214857 smart00853, MutL_C, MutL C terminal dimerisation domain Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|239568 cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) Back     alignment and domain information
>gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain Back     alignment and domain information
>gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL Back     alignment and domain information
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1403
KOG19771142 consensus DNA mismatch repair protein - MLH3 famil 100.0
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 100.0
PRK00095617 mutL DNA mismatch repair protein; Reviewed 100.0
KOG1978672 consensus DNA mismatch repair protein - MLH2/PMS1/ 100.0
KOG1979694 consensus DNA mismatch repair protein - MLH1 famil 100.0
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 100.0
PF08676144 MutL_C: MutL C terminal dimerisation domain; Inter 99.95
PRK14867659 DNA topoisomerase VI subunit B; Provisional 99.92
PF01119119 DNA_mis_repair: DNA mismatch repair protein, C-ter 99.89
cd03485132 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran 99.88
cd03482123 MutL_Trans_MutL MutL_Trans_MutL: transducer domain 99.88
cd03486141 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain 99.87
cd03483127 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain 99.87
PRK14868795 DNA topoisomerase VI subunit B; Provisional 99.87
cd00782122 MutL_Trans MutL_Trans: transducer domain, having a 99.86
smart00853136 MutL_C MutL C terminal dimerisation domain. MutL a 99.86
cd03484142 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran 99.84
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 99.84
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 99.84
PRK05644638 gyrB DNA gyrase subunit B; Validated 99.81
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 99.81
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 99.81
PRK14939756 gyrB DNA gyrase subunit B; Provisional 99.78
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 99.77
PRK05218613 heat shock protein 90; Provisional 99.76
PRK04184535 DNA topoisomerase VI subunit B; Validated 99.65
cd00329107 TopoII_MutL_Trans MutL_Trans: transducer domain, h 99.48
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.46
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.35
PRK14083601 HSP90 family protein; Provisional 99.24
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 99.23
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 99.01
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 98.88
PTZ00109903 DNA gyrase subunit b; Provisional 98.82
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 98.82
PTZ00130814 heat shock protein 90; Provisional 98.81
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 98.74
PLN031281135 DNA topoisomerase 2; Provisional 98.66
PTZ001081388 DNA topoisomerase 2-like protein; Provisional 98.66
PLN032371465 DNA topoisomerase 2; Provisional 98.51
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.32
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 97.82
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 97.74
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.65
PRK10604433 sensor protein RstB; Provisional 97.61
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 97.61
PRK10364457 sensor protein ZraS; Provisional 97.54
PRK09303380 adaptive-response sensory kinase; Validated 97.54
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.51
COG3290537 CitA Signal transduction histidine kinase regulati 97.49
COG4191603 Signal transduction histidine kinase regulating C4 97.41
PRK09470461 cpxA two-component sensor protein; Provisional 97.33
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.32
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.32
PRK11100475 sensory histidine kinase CreC; Provisional 97.26
PRK09467435 envZ osmolarity sensor protein; Provisional 97.24
PRK10815485 sensor protein PhoQ; Provisional 97.15
KOG0020785 consensus Endoplasmic reticulum glucose-regulated 97.14
PRK15347921 two component system sensor kinase SsrA; Provision 97.1
PRK10755356 sensor protein BasS/PmrB; Provisional 97.05
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 97.04
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.04
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.04
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.04
PRK10337449 sensor protein QseC; Provisional 96.98
PRK11086542 sensory histidine kinase DcuS; Provisional 96.96
PRK11091779 aerobic respiration control sensor protein ArcB; P 96.89
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 96.81
PRK11360607 sensory histidine kinase AtoS; Provisional 96.74
PRK13557540 histidine kinase; Provisional 96.62
PRK10490895 sensor protein KdpD; Provisional 96.59
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 96.58
PRK10618894 phosphotransfer intermediate protein in two-compon 96.58
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 96.55
PRK13837828 two-component VirA-like sensor kinase; Provisional 96.49
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 96.37
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 96.35
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 96.32
PRK09835482 sensor kinase CusS; Provisional 96.27
PRK099591197 hybrid sensory histidine kinase in two-component r 96.17
PRK10841924 hybrid sensory kinase in two-component regulatory 95.99
PRK04069161 serine-protein kinase RsbW; Provisional 95.7
PRK10547670 chemotaxis protein CheA; Provisional 95.38
COG0643716 CheA Chemotaxis protein histidine kinase and relat 95.24
COG5002459 VicK Signal transduction histidine kinase [Signal 95.06
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 95.05
PRK03660146 anti-sigma F factor; Provisional 94.98
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 94.77
COG3851497 UhpB Signal transduction histidine kinase, glucose 94.27
PRK11644495 sensory histidine kinase UhpB; Provisional 93.82
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 93.11
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 93.09
COG3850574 NarQ Signal transduction histidine kinase, nitrate 93.08
COG2972456 Predicted signal transduction protein with a C-ter 93.07
COG5000712 NtrY Signal transduction histidine kinase involved 92.99
COG4585365 Signal transduction histidine kinase [Signal trans 92.43
COG4192673 Signal transduction histidine kinase regulating ph 92.3
COG3852363 NtrB Signal transduction histidine kinase, nitroge 91.77
PRK13560807 hypothetical protein; Provisional 91.15
KOG0355842 consensus DNA topoisomerase type II [Chromatin str 88.74
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 87.66
PRK13559361 hypothetical protein; Provisional 86.07
COG4251750 Bacteriophytochrome (light-regulated signal transd 84.66
COG3920221 Signal transduction histidine kinase [Signal trans 83.29
COG3275557 LytS Putative regulator of cell autolysis [Signal 83.08
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-128  Score=1119.76  Aligned_cols=1117  Identities=22%  Similarity=0.214  Sum_probs=910.2

Q ss_pred             CcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCC
Q 000586            3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLG   82 (1403)
Q Consensus         3 ~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~   82 (1403)
                      +|++||.+|..+++||..|.+++++|+|||.|||||+||+|.|.|+...+.++|.|||.||.++||..+|.|| +|||++
T Consensus         1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry-~TSK~h   79 (1142)
T KOG1977|consen    1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRY-FTSKCH   79 (1142)
T ss_pred             CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhh-hhhhce
Confidence            4999999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             CccccccccCCcccCcccchhHHHhhcccEEEEEEecCCCCeEE--EEEeCceeeeeccccccCCCCeEEEEcccccCch
Q 000586           83 HLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYR--KVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP  160 (1403)
Q Consensus        83 s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt~~~~~g~~--i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNlP  160 (1403)
                      ...|+.+.   .||||||||||||+.+|.+.|+|+.++.+.+|.  +...|.++...+++..+...||||+|+||||++|
T Consensus        80 ~~ndl~~~---~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lP  156 (1142)
T KOG1977|consen   80 SVNDLENP---RTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLP  156 (1142)
T ss_pred             eccccccc---cccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcch
Confidence            99999874   699999999999999999999999999988887  5666777777788888889999999999999999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeCCCCCHHHHHHHhhCcccccCcEEEeecCCCeE
Q 000586          161 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALE  240 (1403)
Q Consensus       161 VRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~ld~L~~IFG~evas~L~eIe~e~~~~k  240 (1403)
                      |||++....++++++.|++.|.++||+||.|+|+|.++.++.+++++.++....+.+..--|-                .
T Consensus       157 VRRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilfr~k~~----------------e  220 (1142)
T KOG1977|consen  157 VRRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILFRYKEF----------------E  220 (1142)
T ss_pred             hhhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhhhhccc----------------c
Confidence            999988888999999999999999999999999999998888999998776554444332222                2


Q ss_pred             EEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcCCCcc
Q 000586          241 ISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLY  320 (1403)
Q Consensus       241 IsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~V  320 (1403)
                      +.   +..+  .-++..+|+|||||.|.....++.+..+.+.                  ....-.|-|||+|.||..+|
T Consensus       221 ~~---~s~~--~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~------------------~~~~~~P~yvi~v~cp~~ly  277 (1142)
T KOG1977|consen  221 LS---SSEA--HYNKTMGFLFVNKRLVLRTKKHKLIDQLLRK------------------ESIICKPKYVINVQCPFCLY  277 (1142)
T ss_pred             cc---cchh--ccccccceeeecchhhhccchhhHHHHHHHh------------------hheeccCcceeecccchhhh
Confidence            21   1111  1246689999999999988888888765321                  11235688999999999999


Q ss_pred             cccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCCCCCchhhhccccCCCccccccccCCCccccccccchhhhhccc
Q 000586          321 DLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDH  400 (1403)
Q Consensus       321 DVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  400 (1403)
                      ||..+|+|+.|.|++|+.|+.+|++.+..||++......++++     .+.+..+.+|.     .++|.+.         
T Consensus       278 ~vs~epakt~ieF~~w~~~l~~I~~~~~~~~kkd~~f~~~~G~-----~~~lad~~~Q~-----~vds~~r---------  338 (1142)
T KOG1977|consen  278 DVSMEPAKTLIEFQNWDTLLFCIQEGVKMFLKKDKLFVELSGE-----GFSLADATLQK-----RVDSDER---------  338 (1142)
T ss_pred             hhhcCcccchhhhhcchhhHhHHHHhhhhhhhcceeEEEecCc-----ccccchhhhhh-----hcchhhh---------
Confidence            9999999999999999999999999999999999888888865     12222233333     1222211         


Q ss_pred             cccccccccccccccCCchhhhhhccccccccCCCCCCccccCcccccCCCCCCCcccceeeccccccccCCCCccccCc
Q 000586          401 MFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSP  480 (1403)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (1403)
                              ..|||.-..-+.+    -+|                                       |.      ..+.+
T Consensus       339 --------~~~~~~~~~i~~~----~~~---------------------------------------~~------~~~~~  361 (1142)
T KOG1977|consen  339 --------SNFQEACNNILDS----YEM---------------------------------------FN------LQSKA  361 (1142)
T ss_pred             --------hhhhhhhhhhhhh----hhh---------------------------------------hh------hhhhh
Confidence                    1122221111111    000                                       00      33456


Q ss_pred             hhhcccccCCccccccccccccccccCCchhhhhccccccccCCCCCccCcCCCCccccccCCccccccccccccccccc
Q 000586          481 PLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQ  560 (1403)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (1403)
                      ...+++++++|..  .-..++..||..|+++|...+..|  -|.-+.....++.+.+.|.-.                |-
T Consensus       362 ~krk~~~~n~~~~--ss~lf~a~df~~~g~~l~~~ksvg--~p~~~~~~~~~~~kd~~~~~~----------------~~  421 (1142)
T KOG1977|consen  362 VKRKTTAENVNTQ--SSRLFEATDFNTNGAFLYIYKSVG--PPHSKMTEPSLQNKDSSCSES----------------KM  421 (1142)
T ss_pred             hhhhhcccccCCc--hhccchhhccCCCCceEEeecccC--CCcccccccccCcccccccch----------------hh
Confidence            7789999999988  557888999999999999888777  111111111123333333211                11


Q ss_pred             cccCCCCccCCccccccccCCcccchhhhhhcccccccCCchhhcccchh-hhccccccCCCcCCCCccccccccccccc
Q 000586          561 YHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKR-ELVSQPKYSSKLLDCPFAECLSPVLRKID  639 (1403)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (1403)
                      -.  .+.+ ....+.++.+..+||+                   ++++.. ..++                         
T Consensus       422 ~~--~eti-~~S~~~e~e~~~~~~~-------------------~~~~le~~~~~-------------------------  454 (1142)
T KOG1977|consen  422 LE--QETI-VASEAGENEKHKKSFL-------------------EHSSLENLSPF-------------------------  454 (1142)
T ss_pred             hc--hhhh-hhcccccccccccccc-------------------ccccccccccc-------------------------
Confidence            11  1222 3444555566666654                   233332 1222                         


Q ss_pred             ccCCccCCccccccccccchhhccCCCCCCcccccccccccCC-ccccccCCccCCCCCCCCCCCccccCcccccccccC
Q 000586          640 LHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGY-EYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIK  718 (1403)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (1403)
                               ...+..+++..|.   ....+++.+|+++..+=. ++                    .+|+++.||++.++
T Consensus       455 ---------dt~C~~e~~~~~q---~tt~~~~~~d~lkd~~i~nq~--------------------k~~kd~~evt~~~g  502 (1142)
T KOG1977|consen  455 ---------DTPCHFELEIWKQ---STTVNGMAADILKDNRIQNQP--------------------KRFKDATEVTTLWG  502 (1142)
T ss_pred             ---------cCchhhhhhcccc---ccccccchhhhhcChhhhccc--------------------ccccchhhhhhhHH
Confidence                     2344556788888   889999999999987722 44                    89999999999999


Q ss_pred             cccccccccCCCCCCCCCCccCCcccccccccccccccccccccccccchhhhhcccCCccCCCCCCCCCcc----cccc
Q 000586          719 KPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDE----ASCS  794 (1403)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  794 (1403)
                      |++++.|+++.+..+++|.+++ ..++|...++|++.++...+..+-+--  .--.+..--|--++.+|||+    +.|+
T Consensus       503 kh~~~~c~~r~~~s~~~p~isH-V~~~e~~ep~i~n~~~~~~R~~eTf~g--~t~~s~~TPD~s~~as~~d~~~~~~nCs  579 (1142)
T KOG1977|consen  503 KHSAQTCGRRNVFSYSTPFISH-VVQNEETEPSIKNYVRGPTRAQETFGG--RTRHSVETPDISDLASTLDQLPNKKNCS  579 (1142)
T ss_pred             HHHhhhccccceeeccCCccee-eeccccccccccccccCCchhhhhccC--cccccccCCCccccccccccCccccccc
Confidence            9999999999999999999999 999999999999877765544331100  00011233344558999998    7898


Q ss_pred             ccCcccccccccccccccccccccccCCCCCCCccccccCCCCCcccccCccccccccccccccccCCCCCCCCCcCCCc
Q 000586          795 QHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGH  874 (1403)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  874 (1403)
                      +..    --+.+.+++...+...+. +.+|++..+..+++   +..++|+|..+..+|.++|.|+|+.|  .+|.|.+++
T Consensus       580 t~~----~~~~~~e~tat~p~~~v~-~dsrd~~igskk~i---~r~n~~sS~~Gs~~ls~q~~P~~~~~--~~t~~~sd~  649 (1142)
T KOG1977|consen  580 TNI----SYGLENEPTATYPMFHVS-NDSRDKLIGSKKPI---VRKNLLSSQLGSLELSLQVEPDILLK--DTTMEHSDS  649 (1142)
T ss_pred             ccc----cccccCCccccccchhcc-ccchhhhhccccce---eeeecchhhhcceeecccccccccCc--ccccccccc
Confidence            443    234677888887766554 45889999999996   67778999999999999999999998  799999999


Q ss_pred             cccccccccccccCCCCccCccccccc-ccccccccccccCccccccccccCCccccccCchhhhhhhcccCCCCCccCc
Q 000586          875 FIYNNALEGHSILGEGTSCGQLADTEE-NYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSR  953 (1403)
Q Consensus       875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  953 (1403)
                      ..+|..++.++.+|+ +|...++.+.. |++|||+.   .|.+.+|.|  +..+|++..+|+..                
T Consensus       650 ~~gCri~~~~l~~ek-~p~~~~~~s~~nni~~D~e~---~~e~~~~~~--g~~Sr~~~klcs~~----------------  707 (1142)
T KOG1977|consen  650 DSGCRIASHILDSEK-FPFSKKELSLFNNIPLDLEK---SSEFNELPN--GDSSRKDSKLCSAT----------------  707 (1142)
T ss_pred             ccccchhhhhccccc-CCCchhhhhhhcCccccccc---ccccccCcC--Cchhhhhhhhcccc----------------
Confidence            999999999999999 99999999998 89999999   788999999  99999999999887                


Q ss_pred             CCCCCCCCCccccccccc----ccccCCchhhhcccccCCCCCCCcccccccccCCCCCccccccccccccccccccCCC
Q 000586          954 EHSDVPFDKTDWLCSVLS----SIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKS 1029 (1403)
Q Consensus       954 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1403)
                               .|-.|.+++    ++..|+..|++.+|.|+...|++++|+|+.|+++||||||+++|||++.|.+..+.+.
T Consensus       708 ---------~D~~f~~s~~h~~~~~td~~~ir~~~~~y~~~nq~~~gk~~~~~~ra~~~~~~~~k~fi~~~c~d~T~~qN  778 (1142)
T KOG1977|consen  708 ---------QDNSFNKSKTHSNSNTTDNCVIRETPLVYPYNNQKVTGKDSDVLIRASEQSLDSPKGFIMNPCEDATGDQN  778 (1142)
T ss_pred             ---------ccccccccccccCCeeecceeeeccceeeecccccccccccchhhhcCccccccccceEEeehhhccCCcC
Confidence                     455565555    6678899999999999999999999999999999999999999999999999999883


Q ss_pred             --CCccccccCCCCcccccccccccccccccccCCC-CccCCCCchhhhhhccch------hhHhhhhhcccccccCccc
Q 000586         1030 --NAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPS-SEEEDFRPDFKIESSTIL------DLEETHKAENFKLSLCPHA 1100 (1403)
Q Consensus      1030 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 1100 (1403)
                        .+.+..|   ...++....         |+.++. .+|+.| +.|........      ..|.|..++.-.+..+.|.
T Consensus       779 ~~cp~~~e~---~~~aC~et~---------~~~~c~~l~dv~y-~~m~ev~k~tf~A~dlk~~a~C~tV~vd~~~ed~~q  845 (1142)
T KOG1977|consen  779 GICPQSEES---KARACSETE---------ESNTCCRLFDVAY-GRMVEVNKMTFIAPDLKIQAACTTVAVDVVLEDRCQ  845 (1142)
T ss_pred             CCCcchhHh---hcccchhhh---------hhccchhHHHHHH-HHHHHhhhcceecccchhhccceEEEeeeehhhhhc
Confidence              5566666   555555555         677777 555544 66665544221      5567999999888889999


Q ss_pred             ccccccccccccccccccCCCCCcccCCcccccccCCCcccccccccccccc-cccccccCcccccCceEeeeecCEEEE
Q 000586         1101 HLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGE-FFIPDSINKSCLEDAKVLQQVDKKFIP 1179 (1403)
Q Consensus      1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~i~dis~g~~~l~~~-~~i~~~IsK~~f~~~rVIGQvdkkFIL 1179 (1403)
                      ++.|+..-.-|...++||..+.+-+++..+++.+.++-..+++.+..+++-+ +++|++|+|.++.+|+|+.|++++||.
T Consensus       846 ~f~Se~~l~~lk~~~~wr~~~~~~~V~~ES~e~~~~e~~~~v~a~llev~~d~sl~p~~~nk~~i~~~qvlqqvDkkyi~  925 (1142)
T KOG1977|consen  846 PFRSELVLPFLKRARAWRTVMVDDTVSSESLESLFSEWDNPVFARLLEVAVDVSLYPYRFNKGMIHSMQVLQQVDKKYIA  925 (1142)
T ss_pred             ccchhhccccchhhhhhccccccccccHHhhhhhccccccchhhcchhhccchhhchhhhcccchhhHHHHHhhchhhee
Confidence            9999977667788999999999999999999999999999999999998655 899999999999999999999999999


Q ss_pred             EEeCCeEEEEehhhHHHHHHHHHHHHHHhcCCCccccccCcceeeecCHHHHHHHHHHHHHHHHcCcEEEEeccCccccc
Q 000586         1180 VVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFN 1259 (1403)
Q Consensus      1180 ~E~~dgLyIIDQHAAHERI~yErL~k~l~s~~~~sq~lL~p~Q~LllP~~e~~lLee~le~LeklGFeiei~~~G~~sFG 1259 (1403)
                      |..-+..-++|||||+||++.|.+..++...     .+|+++.++.+-+.++++|+.|.++++.|||++.+...+...|.
T Consensus       926 ~v~~~~~~~~~qha~dek~~~q~~~~k~l~~-----s~li~~l~~kvlpm~~~ll~~Y~~~~~d~gw~~~~~~~~~s~~~ 1000 (1142)
T KOG1977|consen  926 CVMSTKTEENGQHASDEKQQAQGSGRKKLLS-----STLIPPLEIKVLPMQRRLLWCYHKNLEDLGWEFVFPDTSDSLVL 1000 (1142)
T ss_pred             eeeeccccccccchhHHHHHhhhhccccccc-----cccccceeEEechhhHHHHHHHHHHhhhhceEEeccccccccee
Confidence            9999999999999999999999998776532     35777788877778999999999999999999998878877888


Q ss_pred             cccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHhhccccccCCCCCHHHHHHHHH
Q 000586         1260 KNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVE 1339 (1403)
Q Consensus      1260 ~n~~~~~~~~~tI~LrsVP~iL~~~l~~~DL~ElL~eL~et~gs~~ip~~i~elLAS~ACRsAIK~GD~LS~eEM~~LI~ 1339 (1403)
                      .++.++.+.+..+...++|+++......+++.+++.+|+++.|++++|..+.++|+++|||+||||||.|++.||..||+
T Consensus      1001 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~gsstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~ 1080 (1142)
T KOG1977|consen 1001 VGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGSSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIE 1080 (1142)
T ss_pred             ccccceecccccchhhccccccccchhHHHHHHHHHHHhccCCCCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHH
Confidence            88888888888888999999999888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCcEEEEcCChHHHHHHHHHhhhchHhhhccccccchHHHHHHHhhhc
Q 000586         1340 ELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTG 1400 (1403)
Q Consensus      1340 eL~~c~~Pf~CPHGRPT~v~L~sl~eL~k~F~rl~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1400 (1403)
                      .|.+|.+||+|+||||+|+||+++..|+||++.+ -.+..||++++.+..++||..|++.+
T Consensus      1081 ~Ls~c~lpFqCAHGRPsmvPladlk~l~kqi~~~-~~k~~~~~~~~r~~~~~~~~tr~~~~ 1140 (1142)
T KOG1977|consen 1081 ALSSCQLPFQCAHGRPSMVPLADLKHLEKQIKPN-LTKLRKMAQAWRLFGKAECDTRQSLQ 1140 (1142)
T ss_pred             HHHhcCCchhhccCCCCccchhhHHHHHHHhhhh-hHHHHHHHHHHHHhhHhhhhhhhhhc
Confidence            9999999999999999999999999999999998 56667999999999999999998754

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors [] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL Back     alignment and domain information
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 Back     alignment and domain information
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL Back     alignment and domain information
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) Back     alignment and domain information
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family Back     alignment and domain information
>smart00853 MutL_C MutL C terminal dimerisation domain Back     alignment and domain information
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1403
1bkn_A352 Crystal Structure Of An N-Terminal 40kd Fragment Of 3e-28
1b62_A355 Mutl Complexed With Adp Length = 355 4e-28
1b63_A333 Mutl Complexed With Adpnp Length = 333 2e-27
1nhj_A333 Crystal Structure Of N-Terminal 40kd MutlA100P MUTA 7e-27
3na3_A348 Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens 5e-18
3h4l_A367 Crystal Structure Of N Terminal Domain Of A Dna Rep 1e-15
1ea6_A364 N-Terminal 40kda Fragment Of Nhpms2 Complexed With 2e-11
1h7u_A365 Hpms2-atpgs Length = 365 2e-11
1h7s_A365 N-Terminal 40kda Fragment Of Human Pms2 Length = 36 5e-11
3ncv_A220 Ngol Length = 220 2e-06
4fmn_B240 Structure Of The C-terminal Domain Of The Saccharom 4e-04
4e4w_B239 Structure Of The C-terminal Domain Of The Saccharom 4e-04
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E. Coli Dna Mismatch Repair Protein Mutl Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 175/359 (48%), Gaps = 34/359 (9%)
Query: 4   INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
           I  LP  + N + +G V+     VV+ELV NS+DAGAT++ + +       +++ D+G G
Sbjct: 6   IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 65
Query: 63  ISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRP 122
           I +D L L   RHA TSK+   A +DD   I + GFRGEALASIS VS L + ++   + 
Sbjct: 66  IKKDELALALARHA-TSKI---ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQ 121
Query: 123 NGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 182
             ++   +G + + + +      VGTT+   DLFYN P RRK++++   +  H + + + 
Sbjct: 122 EAWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIR 179
Query: 183 RIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGA 238
           RIAL    V+   I++    +++                G I   +FL++  A     G 
Sbjct: 180 RIALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGD 236
Query: 239 LEISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLK 297
           L + G+++ P + + ++   QY Y+N R +      +L+NH A    C D   A+     
Sbjct: 237 LTLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ--- 288
Query: 298 GKRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 355
                    PA++L L   PH + D+   P K  V F     V  FI + + S   +++
Sbjct: 289 ---------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL 337
>pdb|1B62|A Chain A, Mutl Complexed With Adp Length = 355 Back     alignment and structure
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp Length = 333 Back     alignment and structure
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT PROTEIN COMPLEX With Adpnp And One Sodium Length = 333 Back     alignment and structure
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens Length = 348 Back     alignment and structure
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair Prote Length = 367 Back     alignment and structure
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp Length = 364 Back     alignment and structure
>pdb|1H7U|A Chain A, Hpms2-atpgs Length = 365 Back     alignment and structure
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2 Length = 365 Back     alignment and structure
>pdb|3NCV|A Chain A, Ngol Length = 220 Back     alignment and structure
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 240 Back     alignment and structure
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 239 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1403
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 5e-64
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 2e-62
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 4e-59
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 8e-59
3kdg_A197 DNA mismatch repair protein MUTL; endonuclease, DN 1e-22
3ncv_A220 DNA mismatch repair protein MUTL; endonuclease, di 1e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1x9z_A188 DNA mismatch repair protein MUTL; alpha-beta fold, 9e-09
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
 Score =  221 bits (565), Expect = 5e-64
 Identities = 92/389 (23%), Positives = 157/389 (40%), Gaps = 65/389 (16%)

Query: 1   MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVV 57
           M  I+++ +   + + SG V+ DLT  V+ELV NS+DA A ++ +     G+    ++  
Sbjct: 3   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLE--SIECS 60

Query: 58  DDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITK 117
           D+G GI       L  +H  TSK+   A   D   + T GFRGEAL+S+  ++ L +IT 
Sbjct: 61  DNGDGIDPSNYEFLALKHY-TSKI---AKFQDVAKVQTLGFRGEALSSLCGIAKLSVITT 116

Query: 118 AHGRPNGYRKVMKGSKCLYLGIDDERKDV----GTTVVSRDLFYNQPVRRKYMQSSPKKV 173
                    +               +       GTTV+   LF+N PVR+K    + K+ 
Sbjct: 117 TSPPKADKLEYDMVGHIT------SKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQ 170

Query: 174 LHSVKKCVLRIALVHPKVSFKFIDMESEDE---LLCTCSSSSPLALLISSFGIEDFSFLD 230
                  +   A+++  + F   ++  + +   +L T  +SS    + S FG      L+
Sbjct: 171 FTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLE 230

Query: 231 EVN-----------------------ANDGALEISGYISSPYDSI--SVKAFQYVYINSR 265
           EV+                         D  + + GYIS        + K  Q++Y+N R
Sbjct: 231 EVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKR 290

Query: 266 YVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFD 325
            V    + K  N         + +K    F   +       PA  LNL  P SL D+   
Sbjct: 291 PVEYSTLLKCCN---------EVYK---TFNNVQF------PAVFLNLELPMSLIDVNVT 332

Query: 326 PLKTHVVFKDWEPVLAFIERAIRSAWMKK 354
           P K  ++  +   V+   +  +   + ++
Sbjct: 333 PDKRVILLHNERAVIDIFKTTLSDYYNRQ 361
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* Length = 197 Back     alignment and structure
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} Length = 220 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 Length = 188 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1403
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 2e-34
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 1e-26
d1x9za_182 d.292.1.1 (A:) DNA mismatch repair protein MutL {E 1e-25
d1b63a1115 d.14.1.3 (A:217-331) DNA mismatch repair protein M 7e-15
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 5e-14
d1h7sa1134 d.14.1.3 (A:232-365) DNA mismatch repair protein P 9e-10
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score =  129 bits (325), Expect = 2e-34
 Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 7/195 (3%)

Query: 3   TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGS 61
            I  LP  + N + +G V+     VV+ELV NS+DAGAT++ + +       +++ D+G 
Sbjct: 4   PIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGC 63

Query: 62  GISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGR 121
           GI +D L L   RHA       +A +DD   I + GFRGEALASIS VS L + ++   +
Sbjct: 64  GIKKDELALALARHA----TSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQ 119

Query: 122 PNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCV 181
              ++   +  + + + +      VGTT+   DLFYN P RRK++++   +  H   + +
Sbjct: 120 QEAWQAYAE-GRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHID-EII 177

Query: 182 LRIALVHPKVSFKFI 196
            RIAL    V+    
Sbjct: 178 RRIALARFDVTINLS 192
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 182 Back     information, alignment and structure
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1403
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 100.0
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 100.0
d1x9za_182 DNA mismatch repair protein MutL {Escherichia coli 100.0
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.91
d1b63a1115 DNA mismatch repair protein MutL {Escherichia coli 99.91
d1h7sa1134 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.9
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.63
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.57
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 99.48
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.47
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 99.46
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 99.28
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 99.25
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.52
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 98.49
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.47
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 98.41
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.4
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.29
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 98.22
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.84
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 97.6
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.43
d2isya276 Iron-dependent regulator {Mycobacterium tuberculos 90.38
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure