Citrus Sinensis ID: 000593

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400--

MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

ccccccccHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEEcccEEEEEEEEccccccHHcHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcEEEEEcccccccEEEEEEEccEEEcccccccccccccEEEEcccccccHHHHccccccHHHccccHHHHHHHHHcccccEEEEEEEcccccEEEEccccccHHHHHHHHHcHHHHccccEEEcccccEEEEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEcccccccEEEEEccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccHHHccccccEEEccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHcccccccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEccEEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccc

ccccEEccHHHHHHHHccHHEccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHcHcccccHHHHHHHHHHHHccccccHHHHHHHHcEEEEEccccccHHHHHEEHccccEEEEEEcccccccccEEEEEEcccccHHHHHHHHccHHHHHccHHHHHHHHHHHcccEEEEEEccccEEEEEEccccHHHHHHHHHHHcHHHHHHHccEEccccccEEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccEEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccHcccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHccccccccHHHHHHHHcccccccccccccccccHHHHccccccEEEEccHHHHHHHHHHccccHcccccHHHHHccccHHHHccccccHHHHccccHHHHHccHHHcHccEEEEEEcccccccccHHHHcccHHHHHHHHHccccHHHHHcccHHHHHHHHHcccEccccHHHHHccccHHHcccccccccccccccccccEEEEccccEEcEEEEcccccccccHHHcccccccEEEEEcccccccccccccccccHcccccEEEccccccccccccccccccccccccccccccccccccEEEEEccccccEEEccEEEEEEEcccccccccccccccHHcccccccccccccccccccccccccHHHHccccccccccccEcccccccEEEcccccccccEcccccccccccccccccccccccEEEccccccccEcccccEcccEEccccccEEEccccccccccHHHEcccccccccccccccHHHHHHcccccccccccccccccEEEcccccccccccccccccccEEccHccccccccccEEEcccccccccccccccEEEEEEcccccccccccHHHHHHHHHcHHHHHHHHcccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEHHEcccEEEEEEccccEEEEEHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccHHHHHHHHHHHHHHHHccEEEEEEEEcccccccEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHcccccHHHccccEEcHHHHHHHHHccccc

MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKvvddgsgisrdGLVLLGErhatsklghladmddatgigtfgfrgealasisdVSLLEIITKahgrpngyrkvmkgskclylgidderkdvgttvvsrdlfynqpvrrkymqsspkkvLHSVKKCVLRIALVhpkvsfkfidmesedellctcssssplALLISSfgiedfsfldevnandgaleisgyisspydsisVKAFQYVYINSRYVCKGPIHKLLNHLAasfdcsdswkanngflkgkrsksqacpayllnlrcphslydltfdplkthvvfkdwEPVLAFIERAIRSAWMKKIahdsfdvdmledaelplessrfqshqssthlhssplknlAKQRDHMFHKECERItfqefqkdpvelaeentemeffsqpkhssslldgsfaeclpivppkidhrvwtiesswfqdhqpsrhlfspplenlkkEGDHLFRKECeritfgdaekdpaelqeentemeyvpqpkysfglsdgsfakclpivpwkidrhawtiessrfqyhqssphlyssplenlskegdHLFREECEritfgefekhtpelkeenskrelvsqpkyssklldcpfaeclspvlrkidlhgwtsgnrfslkgsyfletcfladgrssipvegdllnsqrgyeylqiepgvsngasgtaspldkdefsnefevskdikkplrlscfsqgspplggplfsggeercesstgcfkykrkrkRVCYDKRMDILeadfsnqsfdsfsrtplqdeascsqhlprlstagditagFDLMSRAslnlfpshaepftketnflsdsiepvgnsvsdykalnsvwcskisdpfpqgaswndghfiynnaleghsilgegtscgqladteenykfdydsklrrsnqekcttarsglrfeyydnsSEDFCKYLqehdpcnkfsrehsdvpfdktdWLCSVLSSieydnpetqrykfrnhncepnpihkelsrrshsappfhrhkrryislnccsveagksnahtlhcaknspeagafkhlqqssgvcnanvkpsseeedfrpdfkiesstildleethkaenfklslcphahlgaqaegtsiisgtkwrnghpqttnnniscdihnqdnilDISSGllhltgeffipdsinksCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLsgegksvayldaeqelvLPEIGYQLLQNFAEQIKDwgwicnihtqgsrsfnkNLNLLQRQITVITLLAvpcifgvnlsdVDLLEFLQQLadtdgssttppsvLRVLNSkacrgaimfgdsllpSECALIVEELKQTSlcfqcahgrpttvpLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

mgtinrlpeavrntvrsgtvlfDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAtsklghladmdDATGIGTFGFRGEALASISDVSLLEIITkahgrpngyrkvmKGSKCLYLGIdderkdvgttvvsrdlfynqpvrrkymqsspkkvlhsVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQshqssthlhssplkNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERitfgdaekdpaELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITfgefekhtpelkeenskrelvsqpkYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGgplfsggeercesstgcfkykrkrkrVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFdydsklrrsnqekcttarsglrfeyYDNSSEDFCKYLQEHDPCNKFSrehsdvpfdKTDWLCSVLSSIEYDNPETQRYKFRNHNCEpnpihkelsrrshsappfhrhkrRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKpsseeedfrpdfKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAdtdgssttppsVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHrgeislkrasrrlltgvrg

MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCssssplallissFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFqshqssthlhssPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCfsqgspplggplfsggEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

**********VRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDML****************************************CERITF*****************************LDGSFAECLPIVPPKIDHRVWTIESSWFQD**********************F***C**I*************************KYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQY**********************FREECERITF***************************KLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQI*************************************************************TGCFKYKRKRKRVCYDKRMDILEADF*****************************GDITAGFDLMSRASLNLFP**********NFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDY*************TARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDN************************************RRYISLNCCSVEAGK****TL**********************************************L*L****KAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAD*********SVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEI***************

MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMK************************************************************************************************************************************************************************VPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRF********************GDHLFREECERITFGEFEKHTPELKE**SKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGV***ASGTASPLDKDEFSNEFEVSKDIKKPLRL*CF******L****FSGGEERCES****************DKRMDILEADFSNQSFDSFSRTPLQ***********************LMSRASLNLFPSHAEPFTKETNFLSDSIE**************************GASWNDGHFIYNNALEG*S*********QLADTEENYKFDYDSKL**SNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSI****PETQRYKFRNHNC******************FHRHKRRYISLNCCSVE**********CAKNSPEAGAFKHLQQSSGVCNANVKP**************SSTILDL***********************************************************************************AKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRH************LDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAD********PSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLN********LHRGEISLKRASRRLL*****

MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRK**********HSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPL******************LKNLAKQRDHMFHKECERITFQEFQKDPVELAEENT*************LLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHT****************KYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFS*********TGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQ*****************FRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

*GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANN*FLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI************************************************************************************************************ESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSC*********************SSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEA*C***********DITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDY*A****WCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAF*******************************************************************************************************************SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLT****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1402	2.2.26 [Sep-21-2011]
Q9UHC1		1453	DNA mismatch repair prote	yes	no	0.239	0.231	0.309	5e-36
A3QAD8		631	DNA mismatch repair prote	yes	no	0.224	0.499	0.326	2e-35
A3CR14		647	DNA mismatch repair prote	yes	no	0.291	0.632	0.281	2e-34
B8E280		572	DNA mismatch repair prote	yes	no	0.229	0.562	0.321	3e-34
Q9CDL1		656	DNA mismatch repair prote	yes	no	0.229	0.490	0.295	4e-34
Q02VS5		656	DNA mismatch repair prote	yes	no	0.311	0.666	0.273	4e-34
Q5FLX4		631	DNA mismatch repair prote	yes	no	0.281	0.624	0.286	9e-34
B8J9F5		607	DNA mismatch repair prote	yes	no	0.231	0.533	0.324	1e-33
A2RP08		656	DNA mismatch repair prote	yes	no	0.311	0.666	0.269	1e-33
Q01QW7		660	DNA mismatch repair prote	yes	no	0.238	0.506	0.308	1e-33

>sp\|Q9UHC1\|MLH3_HUMAN DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3	Back alignment and function desciption

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 182/352 (51%), Gaps = 16/352 (4%)

Query: 4   INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGI 63
           I  L   V+  +RSG  +  L + VEEL  NS+DA A  V V V +    V+V+D+G G+
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQVQVIDNGFGM 61

Query: 64  SRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDV-SLLEIITKAHGRPN 122
             D +  +G R+ TSK   + D+++      +GFRGEALA+I+D+ S +EI +K +    
Sbjct: 62  GSDDVEKVGNRYFTSKCHSVQDLENPR---FYGFRGEALANIADMASAVEISSKKNRTMK 118

Query: 123 GYRKVMKGSKCL-YLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 181
            + K+ +  K L     D  R   GTTV   +LFY  PVRRK M   P+     V++ + 
Sbjct: 119 TFVKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCM--DPRLEFEKVRQRIE 176

Query: 182 RIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEIS 241
            ++L+HP +SF   +  S   +L    +    +     +G+     L E++      E+S
Sbjct: 177 ALSLMHPSISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELS 236

Query: 242 GYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHL--AASFDC----SDSWKANNGFL 295
           GYISS  ++   K  Q++++N R V +  +HKL++ L    S  C      + +  N  L
Sbjct: 237 GYISS--EAHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSL 294

Query: 296 KGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIR 347
           +  RS  +    Y++N++C    YD+  +P KT + F++W+ +L  I+  ++
Sbjct: 295 R-HRSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVK 345

Probably involved in the repair of mismatches in DNA.
Homo sapiens (taxid: 9606)

>sp\|A3QAD8\|MUTL_SHELP DNA mismatch repair protein MutL OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|A3CR14\|MUTL_STRSV DNA mismatch repair protein MutL OS=Streptococcus sanguinis (strain SK36) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|B8E280\|MUTL_DICTD DNA mismatch repair protein MutL OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|Q9CDL1\|MUTL_LACLA DNA mismatch repair protein MutL OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=mutL PE=3 SV=2	Back alignment and function description

>sp\|Q02VS5\|MUTL_LACLS DNA mismatch repair protein MutL OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|Q5FLX4\|MUTL_LACAC DNA mismatch repair protein MutL OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|B8J9F5\|MUTL_ANAD2 DNA mismatch repair protein MutL OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|A2RP08\|MUTL_LACLM DNA mismatch repair protein MutL OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|Q01QW7\|MUTL_SOLUE DNA mismatch repair protein MutL OS=Solibacter usitatus (strain Ellin6076) GN=mutL PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1402
296088648		1230	unnamed protein product [Vitis vinifera]	0.574	0.654	0.457	1e-173
359477080		1218	PREDICTED: uncharacterized protein LOC10	0.574	0.660	0.452	1e-170
255561427		1137	conserved hypothetical protein [Ricinus	0.511	0.630	0.453	1e-151
356495309		1208	PREDICTED: uncharacterized protein LOC10	0.529	0.615	0.409	1e-139
357484163		1293	MutL DNA mismatch repair protein [Medica	0.559	0.606	0.393	1e-134
334187192		1169	DNA mismatch repair protein MLH3 [Arabid	0.365	0.438	0.461	1e-119
449456955		1238	PREDICTED: uncharacterized protein LOC10	0.348	0.394	0.464	1e-115
297802396		1119	hypothetical protein ARALYDRAFT_328199 [	0.436	0.546	0.414	1e-114
3367570		1151	putative protein [Arabidopsis thaliana]	0.363	0.442	0.456	1e-113
400202059		1208	mutL-like protein 3 [Hordeum vulgare sub	0.263	0.306	0.530	2e-97

>gi\|296088648\|emb\|CBI37639.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 396/866 (45%), Positives = 501/866 (57%), Gaps = 61/866 (7%)

Query: 569  SSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAE 628
            SSP+E L++E DH    +  +I F +    T E + + +K   V Q   S + LD   ++
Sbjct: 383  SSPMELLTEENDHFSCRKENKIPFQKLRNDTSEFEGQRNKIGFVHQIDSSFQSLDDSPSK 442

Query: 629  CLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEP 688
            C+S V    + H     + F +  + FLE  F     S   VE  +L S  G E L ++ 
Sbjct: 443  CISGVHPHTE-HLELPDDNFFITKNNFLENKFTVLESSFDHVEDKILGSTWGNESLNVDH 501

Query: 689  GVSNGASGTASPLDKDEFSNEFE-VSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESS 747
             + NG S  A   +  EF N  E  SKD KKP+  SC       LG  L S      ES 
Sbjct: 502  DMGNGFS--ALSYNSYEFRNGVEEASKDFKKPILQSC------SLGRSLLSD----WESD 549

Query: 748  TGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITA 807
               F+    R R    +++D       N+SFD F  T  Q+EAS      RL T  ++  
Sbjct: 550  KFEFQIDGLRTR---QRQID------HNKSFDFFPGTAWQEEASSDWPSSRLKTKPEMCT 600

Query: 808  GFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGA 867
            G D MSR SL    ++ E F  E N   DS+E  G   S + +LNS  CS +S    Q  
Sbjct: 601  GLDFMSRDSLKSLSTYRERFAVENNLPPDSVEQSGKFGSGHLSLNSECCSMVSQSLFQTT 660

Query: 868  SWNDGHFIYNNALEGHSILGEGTSCGQLADTEEN-YKFDYD---SKLRRSNQEKCTTARS 923
             W+  HF + N  +G        S     D+E   + F +D   S   + N    +   +
Sbjct: 661  PWDVEHFTHENTPQGGLGSDRNVSYEHFIDSESGGWIFSHDIMPSSSSQENCSSSSCINT 720

Query: 924  GLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWL-----------------C 966
            GL  + Y   S D  + L+E++  N F+  HSD+   +TDWL                 C
Sbjct: 721  GLGLKDYTVPSRDIYRLLKENNLDNIFTPRHSDILSIETDWLYSKSCGKDNNNNRAVPSC 780

Query: 967  SVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLN-CCSVEA 1025
            S+  S      E ++ + R  NC      KE SR SHSAPP +R KR++++LN   ++E+
Sbjct: 781  SIPLSTNIHKDENKKERLRYQNCGQIHASKERSR-SHSAPPIYRGKRKFLALNDHWTMES 839

Query: 1026 GKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDF---RPDFKIESSTILDL 1082
             K +    H A   PE    KH  QSSG CN   KPS  E+     R D K       D+
Sbjct: 840  KKVDVIDSHDAPTFPETDELKHPLQSSGACNQYFKPSFLEDPLFYGRSDMKKMLENEPDM 899

Query: 1083 EETHKAENFKLSLCPHAHLGAQA-------EGTSII-SGTKWRNGHPQTTNNNISCDIHN 1134
            ++    + F+ S C      + +       E T ++ S +KWRN  P+  + + S   ++
Sbjct: 900  DKIQNIDIFRKSQCLPIDDDSYSFKDFTTKEATDLMNSESKWRNNCPKIASGDKSQKFND 959

Query: 1135 QDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAAD 1194
            Q N+LDISSG+LHL G+  IP SI K+CL+DAKVLQQVDKKFIPVVA GTLA+IDQHAAD
Sbjct: 960  QYNVLDISSGILHLAGDSLIPQSITKNCLQDAKVLQQVDKKFIPVVADGTLAIIDQHAAD 1019

Query: 1195 ERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGS 1254
            ERIRLEELR KVLSGE K++ YLDAEQELVLPEIGYQLL  +AEQI++WGWICNIH Q S
Sbjct: 1020 ERIRLEELRQKVLSGEVKTITYLDAEQELVLPEIGYQLLHTYAEQIQNWGWICNIHAQNS 1079

Query: 1255 RSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLN 1314
            RSF KNL+LL ++ TVITLLAVPCI GVNLSDVDLLEFLQQLADTDGSST PPSVLRVLN
Sbjct: 1080 RSFTKNLDLLHKKPTVITLLAVPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLN 1139

Query: 1315 SKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNN 1374
             KACRGAIMFGD+LLPSEC+LIVEELK+TSLCFQCAHGRPTTVPLVNLEALHKQIA+L +
Sbjct: 1140 LKACRGAIMFGDALLPSECSLIVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLGS 1199

Query: 1375 ----SSELWHGLHRGEISLKRASRRL 1396
                S ELWHGL R E+SL+RA+ RL
Sbjct: 1200 GGGGSIELWHGLRRHELSLERAAHRL 1225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477080\|ref\|XP_002272829.2\| PREDICTED: uncharacterized protein LOC100253902 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255561427\|ref\|XP_002521724.1\| conserved hypothetical protein [Ricinus communis] gi\|223539115\|gb\|EEF40711.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356495309\|ref\|XP_003516521.1\| PREDICTED: uncharacterized protein LOC100788019 [Glycine max]	Back alignment and taxonomy information

>gi\|357484163\|ref\|XP_003612368.1\| MutL DNA mismatch repair protein [Medicago truncatula] gi\|355513703\|gb\|AES95326.1\| MutL DNA mismatch repair protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|334187192\|ref\|NP_195277.5\| DNA mismatch repair protein MLH3 [Arabidopsis thaliana] gi\|332661126\|gb\|AEE86526.1\| DNA mismatch repair protein MLH3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449456955\|ref\|XP_004146214.1\| PREDICTED: uncharacterized protein LOC101213777 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297802396\|ref\|XP_002869082.1\| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp. lyrata] gi\|297314918\|gb\|EFH45341.1\| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|3367570\|emb\|CAA20022.1\| putative protein [Arabidopsis thaliana] gi\|7270503\|emb\|CAB80268.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|400202059\|gb\|AFP73613.1\| mutL-like protein 3 [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1402
RGD\|1309227		1442	Mlh3 "mutL homolog 3 (E. coli)	0.238	0.232	0.331	3.6e-55
UNIPROTKB\|E2QZJ2		1424	MLH3 "Uncharacterized protein"	0.242	0.238	0.317	1.8e-53
UNIPROTKB\|E1BNK2		1452	MLH3 "Uncharacterized protein"	0.258	0.25	0.305	5.8e-53
UNIPROTKB\|F1S2R6		1427	MLH3 "Uncharacterized protein"	0.243	0.239	0.302	1.1e-51
UNIPROTKB\|E1C7F3		1424	LOC100859200 "Uncharacterized	0.240	0.236	0.335	1.2e-50
ZFIN\|ZDB-GENE-060810-45		1171	mlh3 "mutL homolog 3 (E. coli)	0.242	0.290	0.314	7.9e-48
UNIPROTKB\|Q9UHC1		1453	MLH3 "DNA mismatch repair prot	0.239	0.231	0.309	2.5e-46
UNIPROTKB\|G3V419		1275	MLH3 "DNA mismatch repair prot	0.239	0.263	0.309	6.1e-43
DICTYBASE\|DDB_G0283883		1658	mlh3 "MutL DNA mismatch repair	0.139	0.117	0.351	1.7e-39
UNIPROTKB\|Q75F21		734	AAL093C "AAL093Cp" [Ashbya gos	0.254	0.486	0.298	1.5e-36

RGD\|1309227 Mlh3 "mutL homolog 3 (E. coli)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 417 (151.9 bits), Expect = 3.6e-55, Sum P(4) = 3.6e-55
 Identities = 117/353 (33%), Positives = 185/353 (52%)

Query:     4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGI 63
             I  L + V+  +RSG  L  L + VEEL  NS+DA AT V + V +    V+V+D+G G+
Sbjct:     2 IRCLSDEVQAKLRSGLALSSLGQCVEELTLNSIDAEATCVAIRVNMETFQVQVIDNGLGM 61

Query:    64 SRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDV-SLLEIITKAHGRPN 122
             + D +  +G R+ TSK   + D+++ T    +GFRGEALASI+D+ S +EI +K      
Sbjct:    62 AGDDVEKVGNRYFTSKCHSVRDLENPT---FYGFRGEALASIADMASAVEISSKKSTTLK 118

Query:   123 GYRKVMKGSKCLYLGIDD-ERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 181
              + K+ +  K L     D  R  VGTTV   +LFY  PVRRK M   P+     V++ V 
Sbjct:   119 TFVKMFQNGKALAAREADLTRPSVGTTVTVYNLFYQFPVRRKSMD--PRLEFEKVRQRVE 176

Query:   182 RIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFGIEDFSFLDEVNANDGALEIS 241
              ++L+HP +SF   +  S   +L               +G+     L E++      E +
Sbjct:   177 ALSLMHPSISFSLRNDVSGSMILQLPKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEFN 236

Query:   242 GYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAA--SFDC-----SDSWKANNGF 294
             GYISS  ++   K  Q++++N R V +  +HKL++ L    S  C     S S + N+  
Sbjct:   237 GYISS--EAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSS- 293

Query:   295 LKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIR 347
                 RS S+    Y++N++CP   YD+  +P KT + F++W+ VL  ++  I+
Sbjct:   294 -PRHRSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNWDTVLICVQEGIK 345

GO:0000793 "condensed chromosome" evidence=ISO

GO:0000795 "synaptonemal complex" evidence=ISO;IBA

GO:0001673 "male germ cell nucleus" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005712 "chiasma" evidence=ISO;IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006298 "mismatch repair" evidence=ISO;IBA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007130 "synaptonemal complex assembly" evidence=IEA;ISO

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0007140 "male meiosis" evidence=IEA;ISO

GO:0007144 "female meiosis I" evidence=IEA;ISO

GO:0008104 "protein localization" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IBA

GO:0019237 "centromeric DNA binding" evidence=IEA;ISO

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

UNIPROTKB\|E2QZJ2 MLH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BNK2 MLH3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S2R6 MLH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C7F3 LOC100859200 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060810-45 mlh3 "mutL homolog 3 (E. coli)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UHC1 MLH3 "DNA mismatch repair protein Mlh3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V419 MLH3 "DNA mismatch repair protein Mlh3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283883 mlh3 "MutL DNA mismatch repair protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q75F21 AAL093C "AAL093Cp" [Ashbya gossypii ATCC 10895 (taxid:284811)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1402
TIGR00585		312	TIGR00585, mutl, DNA mismatch repair protein MutL	5e-71
COG0323		638	COG0323, MutL, DNA mismatch repair enzyme (predict	2e-62
PRK00095		617	PRK00095, mutL, DNA mismatch repair protein; Revie	2e-47
smart00853		140	smart00853, MutL_C, MutL C terminal dimerisation d	2e-24
COG0323		638	COG0323, MutL, DNA mismatch repair enzyme (predict	5e-21
cd03486		141	cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transdu	2e-20
cd00782		122	cd00782, MutL_Trans, MutL_Trans: transducer domain	1e-18
PRK00095		617	PRK00095, mutL, DNA mismatch repair protein; Revie	2e-17
pfam08676		144	pfam08676, MutL_C, MutL C terminal dimerisation do	1e-12
pfam01119		119	pfam01119, DNA_mis_repair, DNA mismatch repair pro	9e-11
cd03482		123	cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transdu	2e-10
cd00329		107	cd00329, TopoII_MutL_Trans, MutL_Trans: transducer	3e-09
pfam13589		134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	9e-09
cd03485		132	cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_	1e-05
cd00075		103	cd00075, HATPase_c, Histidine kinase-like ATPases;	2e-04
cd03484		142	cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_	5e-04
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	6e-04

>gnl\|CDD\|233035 TIGR00585, mutl, DNA mismatch repair protein MutL	Back alignment and domain information

 Score =  240 bits (614), Expect = 5e-71
 Identities = 115/333 (34%), Positives = 159/333 (47%), Gaps = 26/333 (7%)

Query: 2   GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDG 60
            TI  LP  + N + +G V+     VV+ELV NS+DAGAT++ V +       ++V D+G
Sbjct: 1   MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNG 60

Query: 61  SGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGR 120
           SGI ++ L L  ERHATSK+    D+     I T GFRGEALASIS VS L I TK    
Sbjct: 61  SGIDKEDLPLACERHATSKIQSFEDL---ERIETLGFRGEALASISSVSRLTITTK-TSA 116

Query: 121 PNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCV 180
            +G          +   I    + VGTTV  RDLFYN PVRRK++  SPKK    +   +
Sbjct: 117 ADGLAYQALLEGGMIESIKPAPRPVGTTVEVRDLFYNLPVRRKFL-KSPKKEFRKILDVL 175

Query: 181 LRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISS-FGIEDFSFLDEVNAN-DGAL 238
            R AL+HP +SF       +   L T  + S     I S FG      L  ++   D  L
Sbjct: 176 QRYALIHPDISFSLTHDGKKVLQLSTKPNQSTKENRIRSVFGTAVLRKLIPLDEWEDLDL 235

Query: 239 EISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKG 297
           ++ G+IS P         +Q+++IN R V    + K +  +   +             KG
Sbjct: 236 QLEGFISQPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEY-----------LPKG 284

Query: 298 KRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHV 330
           +       P ++LNL     L D+   P K  V
Sbjct: 285 QY------PVFVLNLEIDPELVDVNVHPDKKEV 311

All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 312

>gnl\|CDD\|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|214857 smart00853, MutL_C, MutL C terminal dimerisation domain	Back alignment and domain information

>gnl\|CDD\|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|239568 cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3)	Back alignment and domain information

>gnl\|CDD\|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family	Back alignment and domain information

>gnl\|CDD\|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain	Back alignment and domain information

>gnl\|CDD\|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL	Back alignment and domain information

>gnl\|CDD\|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins	Back alignment and domain information

>gnl\|CDD\|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2	Back alignment and domain information

>gnl\|CDD\|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>gnl\|CDD\|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2)	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1402
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	100.0
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	100.0
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	100.0
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	100.0
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	100.0
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	100.0
PF08676		144	MutL_C: MutL C terminal dimerisation domain; Inter	99.95
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	99.92
PF01119		119	DNA_mis_repair: DNA mismatch repair protein, C-ter	99.89
cd03485		132	MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran	99.88
cd03482		123	MutL_Trans_MutL MutL_Trans_MutL: transducer domain	99.88
cd03483		127	MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain	99.88
cd03486		141	MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain	99.88
cd00782		122	MutL_Trans MutL_Trans: transducer domain, having a	99.86
smart00853		136	MutL_C MutL C terminal dimerisation domain. MutL a	99.86
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	99.86
cd03484		142	MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran	99.85
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	99.84
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	99.84
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	99.82
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	99.81
PRK05644		638	gyrB DNA gyrase subunit B; Validated	99.81
PRK14939		756	gyrB DNA gyrase subunit B; Provisional	99.78
PRK05218		613	heat shock protein 90; Provisional	99.77
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	99.77
PRK04184		535	DNA topoisomerase VI subunit B; Validated	99.64
cd00329		107	TopoII_MutL_Trans MutL_Trans: transducer domain, h	99.48
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.36
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	99.35
TIGR01058		637	parE_Gpos DNA topoisomerase IV, B subunit, Gram-po	99.29
PRK14083		601	HSP90 family protein; Provisional	99.23
COG0187		635	GyrB Type IIA topoisomerase (DNA gyrase/topo II, t	99.11
COG0326		623	HtpG Molecular chaperone, HSP90 family [Posttransl	98.92
PTZ00109		903	DNA gyrase subunit b; Provisional	98.9
PTZ00108		1388	DNA topoisomerase 2-like protein; Provisional	98.84
PTZ00130		814	heat shock protein 90; Provisional	98.82
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	98.81
PHA02569		602	39 DNA topoisomerase II large subunit; Provisional	98.75
PLN03128		1135	DNA topoisomerase 2; Provisional	98.73
PLN03237		1465	DNA topoisomerase 2; Provisional	98.57
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	98.36
KOG0019		656	consensus Molecular chaperone (HSP90 family) [Post	97.84
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	97.81
COG3290		537	CitA Signal transduction histidine kinase regulati	97.75
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	97.71
PRK10604		433	sensor protein RstB; Provisional	97.69
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	97.64
PRK10364		457	sensor protein ZraS; Provisional	97.62
PRK09303		380	adaptive-response sensory kinase; Validated	97.6
PRK10549		466	signal transduction histidine-protein kinase BaeS;	97.56
COG4191		603	Signal transduction histidine kinase regulating C4	97.56
PRK11100		475	sensory histidine kinase CreC; Provisional	97.43
PRK11086		542	sensory histidine kinase DcuS; Provisional	97.42
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	97.42
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	97.37
KOG0020		785	consensus Endoplasmic reticulum glucose-regulated	97.35
PRK09470		461	cpxA two-component sensor protein; Provisional	97.34
COG0642		336	BaeS Signal transduction histidine kinase [Signal	97.33
PRK09467		435	envZ osmolarity sensor protein; Provisional	97.25
PRK10815		485	sensor protein PhoQ; Provisional	97.19
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	97.16
PRK15347		921	two component system sensor kinase SsrA; Provision	97.13
PRK10337		449	sensor protein QseC; Provisional	97.12
PRK10755		356	sensor protein BasS/PmrB; Provisional	97.1
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	97.08
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	97.03
PRK11091		779	aerobic respiration control sensor protein ArcB; P	97.0
PRK11360		607	sensory histidine kinase AtoS; Provisional	96.98
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	96.96
PRK10618		894	phosphotransfer intermediate protein in two-compon	96.7
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	96.66
PRK13557		540	histidine kinase; Provisional	96.65
PRK10490		895	sensor protein KdpD; Provisional	96.65
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	96.6
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	96.6
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	96.55
PRK13837		828	two-component VirA-like sensor kinase; Provisional	96.5
PRK09835		482	sensor kinase CusS; Provisional	96.46
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	96.37
PRK09959		1197	hybrid sensory histidine kinase in two-component r	96.21
PRK04069		161	serine-protein kinase RsbW; Provisional	96.06
PRK10841		924	hybrid sensory kinase in two-component regulatory	96.01
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	95.59
PRK10547		670	chemotaxis protein CheA; Provisional	95.33
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	95.17
PRK03660		146	anti-sigma F factor; Provisional	95.16
COG5000		712	NtrY Signal transduction histidine kinase involved	95.06
COG3851		497	UhpB Signal transduction histidine kinase, glucose	94.97
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	94.7
COG3852		363	NtrB Signal transduction histidine kinase, nitroge	94.24
COG5002		459	VicK Signal transduction histidine kinase [Signal	94.14
PRK11644		495	sensory histidine kinase UhpB; Provisional	93.74
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	93.7
COG4192		673	Signal transduction histidine kinase regulating ph	93.29
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	93.16
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	92.8
COG4585		365	Signal transduction histidine kinase [Signal trans	92.58
COG2972		456	Predicted signal transduction protein with a C-ter	92.3
KOG0355		842	consensus DNA topoisomerase type II [Chromatin str	91.41
PRK13560		807	hypothetical protein; Provisional	90.79
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	88.09
PRK10935		565	nitrate/nitrite sensor protein NarQ; Provisional	87.32
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	86.72
PRK13559		361	hypothetical protein; Provisional	85.01
COG4251		750	Bacteriophytochrome (light-regulated signal transd	81.74
COG3275		557	LytS Putative regulator of cell autolysis [Signal	81.3
COG3920		221	Signal transduction histidine kinase [Signal trans	80.84

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=2.7e-128  Score=1120.06  Aligned_cols=1117  Identities=22%  Similarity=0.211  Sum_probs=912.2

Q ss_pred             CcccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCC
Q 000593            3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGH   82 (1402)
Q Consensus         3 ~IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s   82 (1402)
                      +|++||.+|..+++||..|.++++||+|||.|||||+||.|.|.|+...+.+.|.|||.||..+||.+++.||+|||++.
T Consensus         1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~   80 (1142)
T KOG1977|consen    1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHS   80 (1142)
T ss_pred             CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhhcee
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCcccCccchhHHHHhhcccEEEEEEecCCCceEE--EEEeCceeeeeccccCCCCCceEEEEcccccChhH
Q 000593           83 LADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYR--KVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPV  160 (1402)
Q Consensus        83 ~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt~~~~~g~~--i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlPV  160 (1402)
                      .+|+.+.   .||||||||||||+.+|.+.++|+..+.+.+|.  +...|.++...+++..+...||||+|+||||++||
T Consensus        81 ~ndl~~~---~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPV  157 (1142)
T KOG1977|consen   81 VNDLENP---RTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPV  157 (1142)
T ss_pred             ccccccc---cccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchh
Confidence            8898763   799999999999999999999999999998887  56677777777888888999999999999999999


Q ss_pred             HHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeCCCCCHHHHHHhhhCcccccCcEEEeecCCcEEE
Q 000593          161 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEI  240 (1402)
Q Consensus       161 RRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~le~L~sIFG~e~as~LieIe~e~~~~kI  240 (1402)
                      |||+....++++++.|++.+.++||+||.|+|+|.++.++..++++.++....+.+..--|.+..++             
T Consensus       158 RRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilfr~k~~e~~~s-------------  224 (1142)
T KOG1977|consen  158 RRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILFRYKEFELSSS-------------  224 (1142)
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhhhhcccccccc-------------
Confidence            9998888899999999999999999999999999999888999999887776666554433332211             


Q ss_pred             EEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCCCccc
Q 000593          241 SGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYD  320 (1402)
Q Consensus       241 eGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VD  320 (1402)
                            .  ..-++..+|+|||||.+.....++.+..+.+  +                .+..-.|-|||+|.||..+||
T Consensus       225 ------~--~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR--~----------------~~~~~~P~yvi~v~cp~~ly~  278 (1142)
T KOG1977|consen  225 ------E--AHYNKTMGFLFVNKRLVLRTKKHKLIDQLLR--K----------------ESIICKPKYVINVQCPFCLYD  278 (1142)
T ss_pred             ------h--hccccccceeeecchhhhccchhhHHHHHHH--h----------------hheeccCcceeecccchhhhh
Confidence                  1  1123567999999999998888888876532  1                112346889999999999999


Q ss_pred             ccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCCCCCchhhhccccCCCccccccccCCCccccccccchhhhhcccc
Q 000593          321 LTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHM  400 (1402)
Q Consensus       321 VNVhPaKtEV~F~dE~~Il~lI~kaIksfL~~~~a~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  400 (1402)
                      |..+|+|+.|.|++|+.|+.+|.+.+..||++......++.+     .+.+..+.+|.     .++|.+.          
T Consensus       279 vs~epakt~ieF~~w~~~l~~I~~~~~~~~kkd~~f~~~~G~-----~~~lad~~~Q~-----~vds~~r----------  338 (1142)
T KOG1977|consen  279 VSMEPAKTLIEFQNWDTLLFCIQEGVKMFLKKDKLFVELSGE-----GFSLADATLQK-----RVDSDER----------  338 (1142)
T ss_pred             hhcCcccchhhhhcchhhHhHHHHhhhhhhhcceeEEEecCc-----ccccchhhhhh-----hcchhhh----------
Confidence            999999999999999999999999999999999888877764     12223333332     1111111          


Q ss_pred             ccccccccccccccCCchhhhhhccccccccCCCCCCccccCcccccCCCCCCCcccceeeccccccccCCCCccccCch
Q 000593          401 FHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPP  480 (1402)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (1402)
                             ..|||.-..-+.+    -+|                                       |.      ..+.+.
T Consensus       339 -------~~~~~~~~~i~~~----~~~---------------------------------------~~------~~~~~~  362 (1142)
T KOG1977|consen  339 -------SNFQEACNNILDS----YEM---------------------------------------FN------LQSKAV  362 (1142)
T ss_pred             -------hhhhhhhhhhhhh----hhh---------------------------------------hh------hhhhhh
Confidence                   2222221111111    000                                       00      344667


Q ss_pred             hhcccccCCccccccccccccccccCCchhhhhccccccccCCCCCccCcCCCCccccccCCcccccccccccccccccc
Q 000593          481 LENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQY  560 (1402)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (1402)
                      ..+++++++|..  .-..++..||..|+++|...+..|  -|.-+.....++.+.+.|.-.                |--
T Consensus       363 krk~~~~n~~~~--ss~lf~a~df~~~g~~l~~~ksvg--~p~~~~~~~~~~~kd~~~~~~----------------~~~  422 (1142)
T KOG1977|consen  363 KRKTTAENVNTQ--SSRLFEATDFNTNGAFLYIYKSVG--PPHSKMTEPSLQNKDSSCSES----------------KML  422 (1142)
T ss_pred             hhhhcccccCCc--hhccchhhccCCCCceEEeecccC--CCcccccccccCcccccccch----------------hhh
Confidence            789999999988  557888999999999999888777  111111111123333333211                111


Q ss_pred             ccCCCCccCCccccccccCCcccchhhhhhcccccccCCchhhcccchh-hhccccccCCCcCCCCcccccccccccccc
Q 000593          561 HQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKR-ELVSQPKYSSKLLDCPFAECLSPVLRKIDL  639 (1402)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (1402)
                      .  .+.+ ....+.++.+..+||+                   ++++.. ..++                          
T Consensus       423 ~--~eti-~~S~~~e~e~~~~~~~-------------------~~~~le~~~~~--------------------------  454 (1142)
T KOG1977|consen  423 E--QETI-VASEAGENEKHKKSFL-------------------EHSSLENLSPF--------------------------  454 (1142)
T ss_pred             c--hhhh-hhcccccccccccccc-------------------ccccccccccc--------------------------
Confidence            1  1222 3444555566666654                   233332 1222                          


Q ss_pred             cCCccCCccccccccccchhhccCCCCCCcccccccccccCC-ccccccCCccCCCCCCCCCCCccccCcccccccccCc
Q 000593          640 HGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGY-EYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKK  718 (1402)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (1402)
                              ...+..+++..|.   ....+++.+|+++..+=. ++                    .+|+++.||++.++|
T Consensus       455 --------dt~C~~e~~~~~q---~tt~~~~~~d~lkd~~i~nq~--------------------k~~kd~~evt~~~gk  503 (1142)
T KOG1977|consen  455 --------DTPCHFELEIWKQ---STTVNGMAADILKDNRIQNQP--------------------KRFKDATEVTTLWGK  503 (1142)
T ss_pred             --------cCchhhhhhcccc---ccccccchhhhhcChhhhccc--------------------ccccchhhhhhhHHH
Confidence                    2344556788888   889999999999987722 44                    899999999999999


Q ss_pred             ccccccccCCCCCCCCCCccCCcccccccccccccccccccccccccchhhhhcccCCccCCCCCCCCCcc----ccccc
Q 000593          719 PLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDE----ASCSQ  794 (1402)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  794 (1402)
                      ++++.|+++.+..+++|.+++ ..++|...++|++.++...+..+-+--  .--.+..--|--++.+|||+    +.|++
T Consensus       504 h~~~~c~~r~~~s~~~p~isH-V~~~e~~ep~i~n~~~~~~R~~eTf~g--~t~~s~~TPD~s~~as~~d~~~~~~nCst  580 (1142)
T KOG1977|consen  504 HSAQTCGRRNVFSYSTPFISH-VVQNEETEPSIKNYVRGPTRAQETFGG--RTRHSVETPDISDLASTLDQLPNKKNCST  580 (1142)
T ss_pred             HHhhhccccceeeccCCccee-eeccccccccccccccCCchhhhhccC--cccccccCCCccccccccccCcccccccc
Confidence            999999999999999999999 999999999999877765544331100  00011233344558999998    78984


Q ss_pred             cCcccccccccccccccccccccccCCCCCCCccccccCCCCCcccccCccccccccccccccccCCCCCCCCCcCCCcc
Q 000593          795 HLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHF  874 (1402)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  874 (1402)
                      ..    --+.+.+++...+...+. +.+|++..+..+++   +..++|+|..+..+|.++|.|+|+.|  .+|.|.+++.
T Consensus       581 ~~----~~~~~~e~tat~p~~~v~-~dsrd~~igskk~i---~r~n~~sS~~Gs~~ls~q~~P~~~~~--~~t~~~sd~~  650 (1142)
T KOG1977|consen  581 NI----SYGLENEPTATYPMFHVS-NDSRDKLIGSKKPI---VRKNLLSSQLGSLELSLQVEPDILLK--DTTMEHSDSD  650 (1142)
T ss_pred             cc----cccccCCccccccchhcc-ccchhhhhccccce---eeeecchhhhcceeecccccccccCc--cccccccccc
Confidence            43    234677888887766554 45889999999996   67778999999999999999999998  7999999999


Q ss_pred             ccccccccccccCCCCccCccccccc-ccccccccccccCccccccccccCCccccccCchhhhhhhcccCCCCCccCcC
Q 000593          875 IYNNALEGHSILGEGTSCGQLADTEE-NYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSRE  953 (1402)
Q Consensus       875 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  953 (1402)
                      .+|..++.++.+|+ +|...++.+.. |++|||+.   .|.+.+|.|  +..+|++..+|+..                 
T Consensus       651 ~gCri~~~~l~~ek-~p~~~~~~s~~nni~~D~e~---~~e~~~~~~--g~~Sr~~~klcs~~-----------------  707 (1142)
T KOG1977|consen  651 SGCRIASHILDSEK-FPFSKKELSLFNNIPLDLEK---SSEFNELPN--GDSSRKDSKLCSAT-----------------  707 (1142)
T ss_pred             cccchhhhhccccc-CCCchhhhhhhcCccccccc---ccccccCcC--Cchhhhhhhhcccc-----------------
Confidence            99999999999999 99999999998 89999999   788999999  99999999999887                 


Q ss_pred             CCCCCCCCccccccccc----ccccCCchhhhcccccCCCCCCCcccccccccCCCCCccccccccccccccccccCCC-
Q 000593          954 HSDVPFDKTDWLCSVLS----SIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKS- 1028 (1402)
Q Consensus       954 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1028 (1402)
                              .|-.|.+++    ++..|+..|++.+|.|+...|++++|+|+.|+++||||||+++|||++.|.+..+.+. 
T Consensus       708 --------~D~~f~~s~~h~~~~~td~~~ir~~~~~y~~~nq~~~gk~~~~~~ra~~~~~~~~k~fi~~~c~d~T~~qN~  779 (1142)
T KOG1977|consen  708 --------QDNSFNKSKTHSNSNTTDNCVIRETPLVYPYNNQKVTGKDSDVLIRASEQSLDSPKGFIMNPCEDATGDQNG  779 (1142)
T ss_pred             --------ccccccccccccCCeeecceeeeccceeeecccccccccccchhhhcCccccccccceEEeehhhccCCcCC
Confidence                    455565555    6678899999999999999999999999999999999999999999999999999883 


Q ss_pred             -CCccccccCCCCcccccccccccccccccccCCC-CccCCCCchhhhhhccch------hhHhhhhhcccccccCcccc
Q 000593         1029 -NAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPS-SEEEDFRPDFKIESSTIL------DLEETHKAENFKLSLCPHAH 1100 (1402)
Q Consensus      1029 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 1100 (1402)
                       .+.+..|   ...++....         |+.++. .+|+.| +.|........      ..|.|..++.-.+..+.|.+
T Consensus       780 ~cp~~~e~---~~~aC~et~---------~~~~c~~l~dv~y-~~m~ev~k~tf~A~dlk~~a~C~tV~vd~~~ed~~q~  846 (1142)
T KOG1977|consen  780 ICPQSEES---KARACSETE---------ESNTCCRLFDVAY-GRMVEVNKMTFIAPDLKIQAACTTVAVDVVLEDRCQP  846 (1142)
T ss_pred             CCcchhHh---hcccchhhh---------hhccchhHHHHHH-HHHHHhhhcceecccchhhccceEEEeeeehhhhhcc
Confidence             5566666   555555555         677777 555544 66665544221      55679999998888899999


Q ss_pred             cccccccccccccccccCCCCCcccCCcccccccCCCcccccccccccccc-cccccccCcccccCceEeeeecCEEEEE
Q 000593         1101 LGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGE-FFIPDSINKSCLEDAKVLQQVDKKFIPV 1179 (1402)
Q Consensus      1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dis~g~~~l~~~-~~v~~~Isk~~f~~~rVIGQvdkkFIL~ 1179 (1402)
                      +.|+..-.-|...++||..+.+-+++..+++.+.++-..+++.+..+++-+ +++|++|+|.++.+|+|+.|++++||.|
T Consensus       847 f~Se~~l~~lk~~~~wr~~~~~~~V~~ES~e~~~~e~~~~v~a~llev~~d~sl~p~~~nk~~i~~~qvlqqvDkkyi~~  926 (1142)
T KOG1977|consen  847 FRSELVLPFLKRARAWRTVMVDDTVSSESLESLFSEWDNPVFARLLEVAVDVSLYPYRFNKGMIHSMQVLQQVDKKYIAC  926 (1142)
T ss_pred             cchhhccccchhhhhhccccccccccHHhhhhhccccccchhhcchhhccchhhchhhhcccchhhHHHHHhhchhheee
Confidence            999977667788999999999999999999999999999999999997554 8999999999999999999999999999


Q ss_pred             EeCCeEEEEehhhHHHHHHHHHHHHHHhcCCCccccccCcceeeecCHHHHHHHHHHHHHHHHcCcEEEEeccCcccccc
Q 000593         1180 VAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNK 1259 (1402)
Q Consensus      1180 e~~dgLyIIDQHAAHERIlyErL~k~~~~~~~~sq~lL~p~Q~LllP~~e~~LL~e~~e~LeklGFeiei~~~G~~sFG~ 1259 (1402)
                      ..-+..-++|||||+||++.|.+..++...     .+|+++.++.+-+.++++|..|.++++.|||++.+...+...|..
T Consensus       927 v~~~~~~~~~qha~dek~~~q~~~~k~l~~-----s~li~~l~~kvlpm~~~ll~~Y~~~~~d~gw~~~~~~~~~s~~~~ 1001 (1142)
T KOG1977|consen  927 VMSTKTEENGQHASDEKQQAQGSGRKKLLS-----STLIPPLEIKVLPMQRRLLWCYHKNLEDLGWEFVFPDTSDSLVLV 1001 (1142)
T ss_pred             eeeccccccccchhHHHHHhhhhccccccc-----cccccceeEEechhhHHHHHHHHHHhhhhceEEecccccccceec
Confidence            999999999999999999999998876532     367777888777789999999999999999999988788778888


Q ss_pred             ccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q 000593         1260 NLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEE 1339 (1402)
Q Consensus      1260 n~~i~~~~~~tI~IrsVP~iL~~~~~~~dl~ElL~eL~e~~g~~~~p~~i~elLAS~ACRsAIK~GD~LS~eEm~~LI~q 1339 (1402)
                      ++.++.+.+..+...++|+++......+++.+++.+|+++.|++++|..+.++|+++|||+||||||.|++.||..||+.
T Consensus      1002 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~gsstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~~ 1081 (1142)
T KOG1977|consen 1002 GKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGSSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIEA 1081 (1142)
T ss_pred             cccceecccccchhhccccccccchhHHHHHHHHHHHhccCCCCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHHH
Confidence            88888888888889999999998888888889999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCcEEEECCChHHHHHHHHHhhhchHhhhhcccccchHHHHHHHhhhc
Q 000593         1340 LKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTG 1399 (1402)
Q Consensus      1340 L~~c~~Pf~CPHGRPTiv~L~sl~eL~K~F~rl~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1399 (1402)
                      |..|.+||+|+||||+|+||+++.+|+||++.+ -.+..||++++.+..++||..|++.+
T Consensus      1082 Ls~c~lpFqCAHGRPsmvPladlk~l~kqi~~~-~~k~~~~~~~~r~~~~~~~~tr~~~~ 1140 (1142)
T KOG1977|consen 1082 LSSCQLPFQCAHGRPSMVPLADLKHLEKQIKPN-LTKLRKMAQAWRLFGKAECDTRQSLQ 1140 (1142)
T ss_pred             HHhcCCchhhccCCCCccchhhHHHHHHHhhhh-hHHHHHHHHHHHHhhHhhhhhhhhhc
Confidence            999999999999999999999999999999998 56667999999999999999998754

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL	Back alignment and domain information

>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2	Back alignment and domain information

>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL	Back alignment and domain information

>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1)	Back alignment and domain information

>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3)	Back alignment and domain information

>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family	Back alignment and domain information

>smart00853 MutL_C MutL C terminal dimerisation domain	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2)	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>PRK14939 gyrB DNA gyrase subunit B; Provisional	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00109 DNA gyrase subunit b; Provisional	Back alignment and domain information

>PTZ00108 DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>PHA02569 39 DNA topoisomerase II large subunit; Provisional	Back alignment and domain information

>PLN03128 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PLN03237 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1402
1bkn_A		352	Crystal Structure Of An N-Terminal 40kd Fragment Of		1e-29
1b63_A		333	Mutl Complexed With Adpnp Length = 333		8e-29
1nhj_A		333	Crystal Structure Of N-Terminal 40kd MutlA100P MUTA		3e-28
1b62_A		355	Mutl Complexed With Adp Length = 355		5e-28
3na3_A		348	Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens		2e-19
3h4l_A		367	Crystal Structure Of N Terminal Domain Of A Dna Rep		6e-17
1ea6_A		364	N-Terminal 40kda Fragment Of Nhpms2 Complexed With		9e-13
1h7u_A		365	Hpms2-atpgs Length = 365		9e-13
1h7s_A		365	N-Terminal 40kda Fragment Of Human Pms2 Length = 36		2e-12
3ncv_A		220	Ngol Length = 220		2e-06
4e4w_B		239	Structure Of The C-terminal Domain Of The Saccharom		4e-04
4fmn_B		240	Structure Of The C-terminal Domain Of The Saccharom		4e-04

>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E. Coli Dna Mismatch Repair Protein Mutl Length = 352