Citrus Sinensis ID: 000609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390---
MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAPLRASGGGSHHAGVSSFQSIDMDDDISESEVKISTKKKKFTSNESDSFASRFQGSRSFSSKRKGKSADLGHDNEADEVGEADEGDLKNSDMLSKSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQ
ccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccc
ccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccEEEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccHHHcccccHHHHHHHHHccHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHcccEEEEEcccccc
MGEKLEQQLKEVgskletppstkDGLVKLLKQAATCLselnqsppasiLEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEitritapeapysddvLKDIFQLIVGTfsglkdtggpsfgRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAvasddhpesvLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSsmsgdsrpghshidyheviydvyrcspqilsgvvpyltgeLLTDQLDTRLKAVGLVGdlfavpgsanneqFHSVFSEFLKRLTDRIVAVRMSVLEHVKSclltdpsradaPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCclrnfngsinqnefewipgkilrclydkdfgsdtiesvlcgslfptgfsvkdRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQmhqdgdapeIQKKILFCFRVmsrsfaepakAEENFLILDQLKDANVWKILMNLLdsntsfdqaftGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILArfsplllggTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGciaqtampvfeTRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKsylpvkdahirpGIDDLLGILKSMLsygemsediesssvDKAHLRLASAKAVLRLSrqwdhkipvdvfhltlrtpeisfpQAKKLFLSKVHQYVKDRLLDAKYACAFLFgiteskspefeEEKQNLADIIQMHHQMKARQIsvqsdansfatypeyIIPYLVHtfahhscpdideckdvkAFELVYCRLYFIVSMLIhkdedvkseasnkESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSrmednsqgvfssvslpstlykpyekkegddslASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDdlekdgnevplGKMIQQLKSqgakggkakkkksspaevkgtendVDILQMVREINLDNlgvlnkfessnghkhfpskqikvdleneeikkrkatdvtsfpvpkrrrslsahggfrtpksnskaplrasgggshhagvssfqsidmdddisesEVKISTkkkkftsnesdsfasrfqgsrsfsskrkgksadlghdneadevgeadegdlknsdmlskspvgsakkrkrrsiaglakcttknagvnieDLIGYRIKvwwpmdkq
MGEKLEQQLKevgskletppstkDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITritapeapysdDVLKDIFQLIVGTfsglkdtggpsfGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSclltdpsradAPQILTALCDRLLDFDENVRKQVVAVICDVAChalnsipvetvklvaerlrdksvlvkrytmerlADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLfptgfsvkdrvrHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALaaitkddglksLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIkskilrcsnkirndtkacwddrsELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKdedvkseasnkesISVIISIFRSIKCSEDIVDAaksknshaicDLGLSITKRLSRMEDNsqgvfssvslpstlykpyEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLksqgakggkakkkksspaevkgtendvdiLQMVREINLDNLGVLNKFessnghkhfpskqikvdleneeikkrkatdvtsfpvpkrrrslsahggfrtpksnskAPLRASGGGSHHAGVSSFQSIDMDDDISESEVKistkkkkftsnesdsfasrfqgsrsfsskrkgksadlghdneadevgeadegdlknsdmlskspvgsakkrkrrsiaglakcttknagvniedligyrikvwwpmdkq
MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTeeelvnllkeeneIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETReseieefikskiLRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKEsisviisifrsiKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIqqlksqgakggkakkkksspaEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAPLRasgggshhagvssFQsidmdddiseseVKISTKKKKFTSNESDsfasrfqgsrsfsskrkgksaDLGHdneadevgeadegdLKNSDMLSKSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQ
**************************VKLLKQAATCLS********SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS**********SHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILE*************************EIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTI****************RLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSY*********************AKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGIT****************IIQ*********ISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKD***********SISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITK****************************************TWLADESVLTHFESLKLETHEVVG******************************************************VDILQMVREINLDNLGVLNKF*********************************************************************************************************************************************************************IAGLAKCTTKNAGVNIEDLIGYRIKVWWP****
***********************DGLVKLLKQAATCLSE************MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLV**************DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLS*****************LFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDL*******HRLYDFLSTLSMKCSYLLFNKEHVKEILL***************SCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKIL***************DRSELCLLKIYGIKTLVKSYLPVK****RPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHH******************YPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKR*************************************************************************************************************************************************************************************************************************************************************************************************************************************RIKVWWPMDKQ
*******************PSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEM*********DKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK********QNLADIIQMHH**********SDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDE********KESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYE***********RQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQL**********************TENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRR******************************GVSSFQSIDMDDDISESEVKIS************************************HDNEADEVGEADEGDLKNSDMLS***************AGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQ
***********VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN*****TKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE*******************************************************NDVDILQMVREINLDNLG*****************************************************************************************************************************************************************************LA*C*TKNAGVNIEDLIGYRIKVWWPMD**
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MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIExxxxxxxxxxxxxxxxxxxxxxxxRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAPLRASGGGSHHAGVSSFQSIDMDDDISESEVKISTKKKKFTSNESDSFASRFQGSRSFSSKRKGKSADLGHDNEADEVGEADEGDLKNSDMLSKSPVGSAKKRKRRSIAGLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1393 2.2.26 [Sep-21-2011]
Q5F3U91412 Sister chromatid cohesion yes no 0.727 0.717 0.248 1e-71
Q9NTI51447 Sister chromatid cohesion yes no 0.727 0.700 0.248 2e-71
Q5U2411464 Sister chromatid cohesion N/A no 0.728 0.693 0.242 1e-70
Q4VA531446 Sister chromatid cohesion yes no 0.727 0.700 0.246 1e-70
Q6TRW41447 Sister chromatid cohesion yes no 0.727 0.700 0.246 1e-70
Q498H01448 Sister chromatid cohesion N/A no 0.728 0.700 0.245 2e-69
Q29RF71337 Sister chromatid cohesion no no 0.730 0.761 0.245 3e-66
A4L9P71333 Sister chromatid cohesion no no 0.730 0.763 0.244 5e-66
A1L1F41320 Sister chromatid cohesion no no 0.719 0.759 0.243 7e-66
Q5F3V31330 Sister chromatid cohesion no no 0.730 0.764 0.247 3e-65
>sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 Back     alignment and function desciption
 Score =  272 bits (696), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 271/1090 (24%), Positives = 492/1090 (45%), Gaps = 77/1090 (7%)

Query: 9    LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLN---AIVQPVLL 65
            +KE+  K+     +K+ +V+ LK       +++Q       E  + +LN    +     L
Sbjct: 19   VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKELYLNLALHLASDFFL 69

Query: 66   KHQDKDVKLLVATCICEITRITAPEAPY-SDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV 124
            KH DKDV+LLVA C+ +I RI APEAPY S D LKDIF  I     GL+DT  P F R  
Sbjct: 70   KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129

Query: 125  VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 183
             +LE +A  +S  +  +LE  +E+  ++Y T F+V ++ H + V   M  +M  ++ E +
Sbjct: 130  YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189

Query: 184  DIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDSRPG 239
             + ++LL  +L  L    +N N  A  LA  ++++ A  +E  I  F     M G +   
Sbjct: 190  TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249

Query: 240  HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299
                   ++I ++Y     +L  V+P L  +L ++  + RL+ V L+  +F    S    
Sbjct: 250  DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309

Query: 300  QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 359
            Q   ++  +L R  D  V +R+  ++    CL+  P  A    +   L  R  D +E +R
Sbjct: 310  QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAK--DLTEYLKVRSHDPEEAIR 367

Query: 360  KQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419
              V+  I   A   L  +    +  V ER  DK   V++  M  LA I++   L++  G 
Sbjct: 368  HDVIVSIVTAAKKDLLLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYSLQSEAGK 427

Query: 420  INQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI 478
                +  WI  K+L   Y         +E +    + P      +R++    +++  D  
Sbjct: 428  EAAKQISWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETNERMKCLYYLYATLDSN 487

Query: 479  EMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
             +KAL ++ + +  L+ +++  + L +Q   D  +  I  K++    V++R+  +P KA+
Sbjct: 488  AVKALNEMWKCQNLLRHQVKDLVDLIKQPKTDASSKAIFSKVM----VITRNLPDPGKAQ 543

Query: 538  ENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLSM 594
            +      Q+   D  +   L  L+    S  QA     ++ K LG  K     FL  +  
Sbjct: 544  DFMKKFTQVLEDDEKIRSQLEMLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKF 603

Query: 595  ---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCMDILGILARFSPLL 642
               + + +  + E +  ++ +V            +     Q +++ +++L +L+   P+ 
Sbjct: 604  LLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPIS 663

Query: 643  LGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 700
                E  E L+  LK ++E + E  L +    G  I E      S++  +L     +G  
Sbjct: 664  FHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKAKKGPP 723

Query: 701  RQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFE 758
            RQAKYA+H + AI      +  + +++ L   L+     HL   L ++G IA  A   F 
Sbjct: 724  RQAKYAIHCINAIFSSKETQ-FAQIFEPLHKSLDPSNFEHLITPLVTIGHIAMLAPDQFA 782

Query: 759  TR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGIKTLVKSYLPVKDA 814
               +S +  FI   +L         T   W   ++ S   L+KI  IK +V+  L +K+ 
Sbjct: 783  APLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETLVKIQAIKMMVRWLLGMKNN 842

Query: 815  HIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ--WDHKIPVD 872
            H + G   L  +   + S G+++E  + S  D + LRLA+  A+++L+++  +   I ++
Sbjct: 843  HSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLE 902

Query: 873  VFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLFGITESKSPEFEEE-- 928
             + L          Q +++F  K+H+ +    L  +Y   CA       +K P  E    
Sbjct: 903  QYQLCALAINDECYQVRQIFAQKLHKGLSRLRLPLEYMAICALC-----AKDPVKERRAH 957

Query: 929  -KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKA 987
             +Q L   I +  +   +  +V     S    PEY++PY +H  AH   PD  + +D++ 
Sbjct: 958  ARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD--PDYVKVQDIEQ 1013

Query: 988  FELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIV---DAAKSKNS 1044
             + +   L+FI+ +L+ K+E+         S + I  +  +IK ++D     DA  ++  
Sbjct: 1014 LKDIKECLWFILEILMAKNEN--------NSHAFIRKMVENIKQTKDAQGPDDAKMNEKL 1065

Query: 1045 HAICDLGLSI 1054
            + +CD+ ++I
Sbjct: 1066 YTVCDVAMNI 1075
Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis.
Gallus gallus (taxid: 9031)
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 Back     alignment and function description
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 Back     alignment and function description
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 Back     alignment and function description
>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 Back     alignment and function description
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 Back     alignment and function description
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 Back     alignment and function description
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 Back     alignment and function description
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1393
147777785 1922 hypothetical protein VITISV_030148 [Viti 0.980 0.710 0.713 0.0
255585406 1735 androgen induced inhibitor of proliferat 0.975 0.783 0.719 0.0
2241394501417 predicted protein [Populus trichocarpa] 0.977 0.961 0.717 0.0
2240895651411 predicted protein [Populus trichocarpa] 0.951 0.939 0.698 0.0
356522079 1641 PREDICTED: sister chromatid cohesion pro 0.975 0.828 0.683 0.0
356564452 1642 PREDICTED: sister chromatid cohesion pro 0.975 0.827 0.679 0.0
449443672 1692 PREDICTED: sister chromatid cohesion pro 0.987 0.812 0.669 0.0
356557993 1656 PREDICTED: sister chromatid cohesion pro 0.975 0.820 0.649 0.0
186530154 1606 sister chromatid cohesion protein PDS5 [ 0.983 0.853 0.633 0.0
186530158 1607 sister chromatid cohesion protein PDS5 [ 0.983 0.852 0.633 0.0
>gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2013 bits (5215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1007/1411 (71%), Positives = 1174/1411 (83%), Gaps = 45/1411 (3%)

Query: 1    MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
            M +K +QQL++VGSKLE PP+TKD LVKLLKQAATCL+EL+QSP ASILE++QP LNAIV
Sbjct: 56   MDQKRQQQLRDVGSKLENPPATKDALVKLLKQAATCLTELDQSPSASILESLQPSLNAIV 115

Query: 61   QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
            +P LLKHQD+DVKLLVATCICEITRITAPEAPYSDDVLKDIF+LIV TFSGL DT GP+F
Sbjct: 116  KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFRLIVSTFSGLSDTNGPAF 175

Query: 121  GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
            GRRVVILETLA+YRSCVVMLDLECD+LVNEM+ TFF+VA DDHPESVL+SMQTIM+VLLE
Sbjct: 176  GRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFFSVARDDHPESVLTSMQTIMVVLLE 235

Query: 181  ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
            ESED++EDLL  +LS LGRNK+D    ARRLAMNVIE CA KLE GIKQFLVSS+SGD+R
Sbjct: 236  ESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVIEHCAAKLEPGIKQFLVSSISGDNR 295

Query: 238  PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
              +S IDYHEVIYD+YRC+PQILSGV PYLTGELLTD LDTRLKAV LVGDLFA+PG A 
Sbjct: 296  SMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVGDLFALPGLAI 355

Query: 298  NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
            +E F  +FSEFLKRL DR+V VRMSVLEHVKSCLL++PSRA+APQI++ALCDRLLD+DEN
Sbjct: 356  SEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISALCDRLLDYDEN 415

Query: 358  VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
            VRKQVVAVICDVACH+L+SIPVET KLVAERLRDKSVLVK+YT+ERLA+I+   CLR  +
Sbjct: 416  VRKQVVAVICDVACHSLSSIPVETXKLVAERLRDKSVLVKKYTLERLAEIYNLYCLRCCD 475

Query: 418  GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
            GS+N +EF+WIPGKILRC YDKDF SDTIESVLC +LFPT FS+KD+V+HWVR+FSGFD+
Sbjct: 476  GSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKHWVRVFSGFDK 535

Query: 478  IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
            +E+KALEKILEQKQRLQQEMQRYLSL+QMHQDG+ PEIQKK+ +C R+MSR FA+PAKAE
Sbjct: 536  VEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMSRLFADPAKAE 595

Query: 538  ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
            ENF ILDQLKD N+WKIL +L+D  TSF QA + RDDLL+ILG KHRLYDFL TLS+KCS
Sbjct: 596  ENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYDFLGTLSLKCS 655

Query: 598  YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE 657
            YLLFNKEHVKE LLE A QKSS N Q++QSCM++L +LARFSPLLL G EE+LV+LLK++
Sbjct: 656  YLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDD 715

Query: 658  NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
            NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+LERLCLEGSRRQAKYAVHALAAITKDD
Sbjct: 716  NEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAVHALAAITKDD 775

Query: 718  GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 777
            GLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQTAMPVFETRESEIE FIK +IL+CS+
Sbjct: 776  GLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGFIKCEILKCSS 835

Query: 778  KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
                                I+GIKT+VKSYLPVKDAH+R GIDDLL ILK++L +GE+S
Sbjct: 836  --------------------IFGIKTMVKSYLPVKDAHLRLGIDDLLEILKNILLFGEIS 875

Query: 838  EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
            +DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV VFHLTLRT E SFPQAKKLFLSKVH
Sbjct: 876  KDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLRTSESSFPQAKKLFLSKVH 935

Query: 898  QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
            QY+KDRLLDAKYACAF F I  S+  EFEE+K NL DIIQM+HQ KARQ+S QSDA+S A
Sbjct: 936  QYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQAKARQLSTQSDASSLA 995

Query: 958  TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--- 1014
             YPE+I+PYLVH  AHHSCPDIDECKDVKAFE +Y +L+  +SML+H DED K+EA    
Sbjct: 996  -YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDEDTKAEAGADK 1054

Query: 1015 NKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSL 1074
             KE IS IISIF+SIK SEDIVDAAKSKNSHA+CDLGLSI KRL + +D+ QG+ SS++L
Sbjct: 1055 EKEGISAIISIFQSIKLSEDIVDAAKSKNSHALCDLGLSIIKRLVQKQDDVQGLTSSITL 1114

Query: 1075 PSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEK 1134
            P  LYK  EKKEGDDS+ASE QTWLADE VLTHFESLKLET+ +V  E      ++B ++
Sbjct: 1115 PPILYKLCEKKEGDDSVASEGQTWLADEXVLTHFESLKLETNGMVDEE----GVINBNDR 1170

Query: 1135 DGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNK 1194
            DGNE+PLGKMI++LKS+G K  K K KKSSPA+ K  ENDVDIL+MVREIN D +G+ +K
Sbjct: 1171 DGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREINFDAMGMSSK 1230

Query: 1195 FESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAP 1254
            FESSNGH++   ++ K+  ++E+ K+R++T+VT   VPKRRRS SA      P+S SK  
Sbjct: 1231 FESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTPVTVPKRRRSSSAKSSL--PRSASKGS 1288

Query: 1255 LRASGGGSHHAGVSSFQSIDMDDDI-SESEVKISTKKKKFTSNESDSFASRFQGSRSFSS 1313
            +RA     H AGVSSFQS DMD ++ ++SE K+S  K      ESD   S F+ + +F S
Sbjct: 1289 VRALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVSALKNIGEPAESDLLVSCFRRNSNFLS 1348

Query: 1314 KRKGKSADLGHDNEADEVGEADEGDLKNSDMLS-----------KSPVGSAKKRKRRSIA 1362
            KRKGK +D G ++EA  VGE  + DL+  ++             KSP GS KKRKRRSIA
Sbjct: 1349 KRKGKGSDKGDNDEARIVGEDXDHDLRKPNVPMETDKIHTASNVKSPTGSTKKRKRRSIA 1408

Query: 1363 GLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQ 1393
            GLAK T+K    +  DLI  RIKVWWPMDKQ
Sbjct: 1409 GLAKSTSKEGRSHAADLIDCRIKVWWPMDKQ 1439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224089565|ref|XP_002308759.1| predicted protein [Populus trichocarpa] gi|222854735|gb|EEE92282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|186530154|ref|NP_001119389.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008169|gb|AED95552.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186530158|ref|NP_001119390.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008170|gb|AED95553.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1393
TAIR|locus:2169058 1607 AT5G47690 [Arabidopsis thalian 0.901 0.781 0.639 0.0
RGD|13070941333 Pds5a "PDS5, regulator of cohe 0.527 0.551 0.249 3.1e-66
UNIPROTKB|Q29RF71337 PDS5A "Sister chromatid cohesi 0.527 0.549 0.249 2.2e-65
UNIPROTKB|Q5F3V31330 PDS5A "Sister chromatid cohesi 0.528 0.553 0.247 2.3e-65
UNIPROTKB|E2R7R41337 PDS5A "Uncharacterized protein 0.527 0.549 0.249 2.8e-65
UNIPROTKB|F1NIQ31330 PDS5A "Sister chromatid cohesi 0.528 0.553 0.247 3.7e-65
UNIPROTKB|F1N7G81449 PDS5B "Uncharacterized protein 0.397 0.382 0.268 7.1e-64
UNIPROTKB|Q5F3U91412 PDS5B "Sister chromatid cohesi 0.397 0.392 0.270 1e-63
UNIPROTKB|F1P3B81446 PDS5B "Sister chromatid cohesi 0.397 0.383 0.270 1.2e-63
UNIPROTKB|F1Q0Z01447 PDS5B "Uncharacterized protein 0.397 0.382 0.268 3e-63
TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4159 (1469.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 808/1264 (63%), Positives = 988/1264 (78%)

Query:     1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
             M +K E+QLKE+GSKL+  P +KD L+KLLK+AA CLSEL QSPP ++L+++QPFL+A++
Sbjct:     1 MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60

Query:    61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
             +P +L HQDKDVKLLVA+C+ EITRITAPEAPYSD+++KDIFQLIV  F+GL D  GPSF
Sbjct:    61 KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120

Query:   121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
             GRRV+ILET+AKYRSCVVMLDLECD+LV E+++TF  VA DDHPE V SSMQ IMIVLLE
Sbjct:   121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLE 180

Query:   181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
             ESED+QE LL+ILLS LGRN++D    ARRLAM VIE CA K+E+ IKQFL+SSMSGDSR
Sbjct:   181 ESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDSR 240

Query:   238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
                S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG+LF++PG   
Sbjct:   241 FSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVGELFSLPGRVI 300

Query:   298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
             +E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++ALCDRLLD+DEN
Sbjct:   301 SEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISALCDRLLDYDEN 360

Query:   358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
             +RKQVVAVICDV+  AL SIPV+T+KLVAERLRDK++LVK YTMERL ++FR  CLR  +
Sbjct:   361 IRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTELFRVYCLRCAD 420

Query:   418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
             G ++  +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+HW++IFSGFD+
Sbjct:   421 GKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKHWIQIFSGFDK 480

Query:   478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
             +E KA EKILEQ+QR+QQEMQRYLS++Q  Q  DAPEIQKKILF FRVMSR+F++P K E
Sbjct:   481 VETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMSRAFSDPPKTE 540

Query:   538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
             +NFLILDQLKDAN+WKIL NLLD NTS  QA   RDD+LKIL  KH LYDFLSTLS+KCS
Sbjct:   541 QNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYDFLSTLSIKCS 600

Query:   598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTXXXXXXXXXXX 657
             YLLF+KE+VKEIL EV+ +KSS N   +Q CMD LG+LA F P L  G            
Sbjct:   601 YLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAEEELISFLKDD 660

Query:   658 XXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
               ++KEG L +LAKAGGTIRE L   +SSVDLLLER+C+EG+R+QAKYAVHALA+ITKDD
Sbjct:   661 DEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAVHALASITKDD 720

Query:   718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXXXXXXXLRCSN 777
             GLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR            L+  +
Sbjct:   721 GLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILKLKS 780

Query:   778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
             +  +D K  WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGILK++LS+GE+S
Sbjct:   781 ETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVS 840

Query:   838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
             ED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP AKK+FL KVH
Sbjct:   841 EDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPTAKKIFLGKVH 900

Query:   898 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
             QYVKDR+L+ KYAC+FLF IT S   E EE+K NLADIIQ  +Q K R+IS Q+DANS  
Sbjct:   901 QYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKISAQTDANSVT 960

Query:   958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKE 1017
              YP +I+PYLVH  AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+ED K+E  +KE
Sbjct:   961 LYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEEDGKTEDIDKE 1020

Query:  1018 XXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLP 1075
                           K SED+ DA KSKNSHAIC+LGLSI   L++ E + QG  + VSLP
Sbjct:  1021 REYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITPVSLP 1080

Query:  1076 STLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE--VVGSEIARHEALDDLE 1133
              TLYKP EK EGD S   E + WLADE+VL HF +LKLE+H    V  + + +E + D E
Sbjct:  1081 PTLYKPSEKVEGDKSQVGEEKLWLADETVLLHFRALKLESHADASVIPQTSENEVMIDGE 1140

Query:  1134 KDGNEVPLGKMIXXXXXXXXXXXXXXXXXXXXXEVKGTENDVDILQMVREINLDNLGVLN 1193
              DGNE+PLGK++                     E +  +NDVD+L+MVREINLD+L +L+
Sbjct:  1141 SDGNEIPLGKIVERLRAQGTKTRKGKKNKSVPAEDENGKNDVDVLKMVREINLDHLQMLD 1200

Query:  1194 KFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSF-PVPKRRRSLSAHGGFRTPKSNSK 1252
             KFESSNGHKH PS++ ++   +++  KR   D TS   VPKRRRS S H  ++   S  K
Sbjct:  1201 KFESSNGHKHSPSERAEICQRDQKGNKRNVGDATSVVSVPKRRRSSSGHSPYKFSNSGPK 1260

Query:  1253 APLR 1256
               L+
Sbjct:  1261 VQLK 1264
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0007067 "mitosis" evidence=RCA
RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0Z0 PDS5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1393
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 100.0
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 99.69
PTZ00429746 beta-adaptin; Provisional 98.55
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.5
PTZ00429746 beta-adaptin; Provisional 98.16
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 97.99
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.93
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 97.84
PRK09687280 putative lyase; Provisional 97.62
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.56
PRK09687280 putative lyase; Provisional 97.45
KOG18241233 consensus TATA-binding protein-interacting protein 97.37
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.22
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.09
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.9
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 96.69
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.68
KOG2025892 consensus Chromosome condensation complex Condensi 96.57
KOG18241233 consensus TATA-binding protein-interacting protein 96.53
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 96.51
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 96.43
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.31
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.29
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.13
KOG04141251 consensus Chromosome condensation complex Condensi 96.11
KOG1242569 consensus Protein containing adaptin N-terminal re 95.98
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.86
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 95.74
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.5
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.44
KOG19491005 consensus Uncharacterized conserved protein [Funct 95.33
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 94.76
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 94.66
COG5218885 YCG1 Chromosome condensation complex Condensin, su 94.6
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.53
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 94.36
KOG20111048 consensus Sister chromatid cohesion complex Cohesi 94.25
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 94.17
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.11
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 94.06
COG5096757 Vesicle coat complex, various subunits [Intracellu 94.06
KOG19491005 consensus Uncharacterized conserved protein [Funct 94.03
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.01
KOG04131529 consensus Uncharacterized conserved protein relate 93.97
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.63
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.63
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.52
COG5096757 Vesicle coat complex, various subunits [Intracellu 93.17
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 93.02
KOG2259823 consensus Uncharacterized conserved protein [Funct 92.82
KOG04141251 consensus Chromosome condensation complex Condensi 92.75
COG50981128 Chromosome condensation complex Condensin, subunit 92.54
KOG2025892 consensus Chromosome condensation complex Condensi 92.51
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 92.36
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.62
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 91.41
KOG09151702 consensus Uncharacterized conserved protein [Funct 91.0
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 90.99
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 90.74
PF1036392 DUF2435: Protein of unknown function (DUF2435) 90.5
KOG2259823 consensus Uncharacterized conserved protein [Funct 90.39
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 89.92
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.89
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 89.53
COG50981128 Chromosome condensation complex Condensin, subunit 89.44
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 89.15
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 88.73
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 88.69
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 88.42
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 87.87
TIGR02270410 conserved hypothetical protein. Members are found 87.72
KOG1242569 consensus Protein containing adaptin N-terminal re 87.69
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 87.55
KOG1820815 consensus Microtubule-associated protein [Cytoskel 86.83
KOG20111048 consensus Sister chromatid cohesion complex Cohesi 85.61
KOG2956516 consensus CLIP-associating protein [General functi 85.24
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 84.97
TIGR02270410 conserved hypothetical protein. Members are found 84.59
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 82.31
COG1413335 FOG: HEAT repeat [Energy production and conversion 82.27
PF05804708 KAP: Kinesin-associated protein (KAP) 81.47
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 80.52
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 80.46
COG1413335 FOG: HEAT repeat [Energy production and conversion 80.05
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-137  Score=1318.96  Aligned_cols=1064  Identities=30%  Similarity=0.467  Sum_probs=902.7

Q ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCC
Q 000609           10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP   89 (1393)
Q Consensus        10 ~~~g~kL~~~~~s~~~LlkrL~~l~~~L~~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP   89 (1393)
                      ..-|-+....|++++||++||++|++||++++|++  .+.+++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus         6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP   83 (1266)
T KOG1525|consen    6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP   83 (1266)
T ss_pred             cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence            34456666778999999999999999999999996  6999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000609           90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS  169 (1393)
Q Consensus        90 daPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~v~~  169 (1393)
                      ||||++.||+|||++|++||.||+|+.+|||.||+||||+|++||.|++|.|.+|++++.+||++||++++.+|+.+|.+
T Consensus        84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~  163 (1266)
T KOG1525|consen   84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN  163 (1266)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence            99999999999999999999999999999999999999999999955555555599999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCC-CCCCCchhH
Q 000609          170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY  245 (1393)
Q Consensus       170 ~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~---~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~-~~~~~~~~~  245 (1393)
                       |.+||+.+|.|.+.||.++|++||.+|..++.   ..|+.||..+|+.|++.+++.+++||++.+.++. ..+....++
T Consensus       164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~  242 (1266)
T KOG1525|consen  164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY  242 (1266)
T ss_pred             -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence             99999999999999999999999999976543   3999999999999999999999999999888764 455667789


Q ss_pred             HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000609          246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE  325 (1393)
Q Consensus       246 h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~  325 (1393)
                      |++|++||+++|++|++|||||++||++|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||+
T Consensus       243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~  322 (1266)
T KOG1525|consen  243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE  322 (1266)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000609          326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA  405 (1393)
Q Consensus       326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La  405 (1393)
                      ++++||.+||++..+..+..+++.|+.|+|++||..+|.++|+++.+.+..+|. +|+.++||+||||+.||++||++|+
T Consensus       323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La  401 (1266)
T KOG1525|consen  323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA  401 (1266)
T ss_pred             HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999999999998888899999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHH-hhhhccCCCcchhccccchHHHhhhhcccCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000609          406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL  483 (1393)
Q Consensus       406 ~lY~~-~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~~-~lvE~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~kal  483 (1393)
                      ++|+. ||..+++|...+..|.|||++||++||.|+.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus       402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf  481 (1266)
T KOG1525|consen  402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF  481 (1266)
T ss_pred             HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence            99996 565667777888999999999999999998764 4999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000609          484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS  561 (1393)
Q Consensus       484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~kl--nD~ri~klLk~~id~  561 (1393)
                      ..|+++|+++|.+++.||.+++..+.++   ..+++...|..++..||||.......++|++.  .+..+...+..+..+
T Consensus       482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~  558 (1266)
T KOG1525|consen  482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP  558 (1266)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999988765443   77788888999999999999999999999763  667888899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHhhhccccch-hHHHHHHHHHHhhc-------ccch--hhhHHH
Q 000609          562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQK-------SSAN--AQFMQS  627 (1393)
Q Consensus       562 ~t~~~t~~~a~~ELlkrL~~----~~~~~e~l~~Ll~R~S~li~Nk-s~V~~LL~~~~~~~-------~~~~--~~~~~~  627 (1393)
                      ..+|.++.-.+++++.+++.    +..+..+.+.|..|..++.+.. +.+..+++......       ..++  ......
T Consensus       559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl  638 (1266)
T KOG1525|consen  559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL  638 (1266)
T ss_pred             chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence            99998876666766666654    3447788889999999987777 77777776543211       1111  123455


Q ss_pred             HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000609          628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY  705 (1393)
Q Consensus       628 a~eLL~~IS~~~P~lFk~~--~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~  705 (1393)
                      ...||.++|..+|.+|...  +..++..+.+..+...+.+|+.+...|+......+...+.+...+.+++..|+|.|||+
T Consensus       639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~  718 (1266)
T KOG1525|consen  639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL  718 (1266)
T ss_pred             HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence            7889999999999988876  46666666666666778899999888855555555666788999999999999999999


Q ss_pred             HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccc
Q 000609          706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI  779 (1393)
Q Consensus       706 Av~~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Ia~~ap~vfe~~-~~eI~~fiik~IL~~~~~~  779 (1393)
                      |++|+.++...+.. .+.+.+..+.+.+...     .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus       719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~  797 (1266)
T KOG1525|consen  719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP  797 (1266)
T ss_pred             HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence            99999988876422 3445666677766433     599999999999999999666654 7889999999998888888


Q ss_pred             CCC-CCCCCCC---C-hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhHHhhhh
Q 000609          780 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR  851 (1393)
Q Consensus       780 ~~~-~~~~W~d---~-s~~~~aKi~aLK~lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR  851 (1393)
                      ++. ....|.+   . +..+.+|+++++++++||++...+.-  +-.+...+.+|..++ +.|+...+..+|..+++++|
T Consensus       798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr  877 (1266)
T KOG1525|consen  798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR  877 (1266)
T ss_pred             ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence            765 5667865   2 55688899999999999999876421  111112566777755 79999999889999999999


Q ss_pred             HHHHHHHHHhhhh--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHH
Q 000609          852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEK  929 (1393)
Q Consensus       852 LaAa~~lLKLar~--~d~~i~~~~f~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~L~~rY~~lflla~~a~ep~~~~e~k  929 (1393)
                      +.|+.+++|||..  +..+++++.|..+.+.++|++++||..|+.|+++++....+|.-|++.|.+++.+  +  ..+..
T Consensus       878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d--~--~~~~~  953 (1266)
T KOG1525|consen  878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPD--V--SKELL  953 (1266)
T ss_pred             hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccc--h--hhhhh
Confidence            9999999999976  5788999999888888999999999999999999999999999999999885422  1  11111


Q ss_pred             ---HHHHHHHHHHHHHHHhhhhhccccccccCcchhhhHHHHHHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccC
Q 000609          930 ---QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKD 1006 (1393)
Q Consensus       930 ---~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIhlLAHH~~pd~~e~~d~~~~~~~~~~L~F~L~~L~~~~ 1006 (1393)
                         ....+-...+++.+.....+.++.. ....|||+.+|.+|++|||  |++...+++..|-.+..++||.++.+...+
T Consensus       954 ~~~~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~ 1030 (1266)
T KOG1525|consen  954 ANKREEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN 1030 (1266)
T ss_pred             hHHHHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh
Confidence               1111111222222222232333221 5688999999999999999  999998899999999999999999995421


Q ss_pred             ccccccccccccH--HHHHHHHHHhhcccccccc---ccccchHHHHHhHHHHHHHHhc-cCCCCcccccccCCCccccc
Q 000609         1007 EDVKSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYK 1080 (1393)
Q Consensus      1007 ~~~~~~~~~~eNi--SlLy~la~rIKq~rDa~d~---~~S~nly~l~DLAq~IIk~~~~-k~w~lqsyPGkV~LP~~lF~ 1080 (1393)
                                +|+  .+.-.+.+-+++.+|...+   ..+..||+|||+|+.|+..... .+|...+|||+.+||..+|+
T Consensus      1031 ----------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~ 1100 (1266)
T KOG1525|consen 1031 ----------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFT 1100 (1266)
T ss_pred             ----------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhC
Confidence                      232  2333444556667787643   3456799999999999998775 67999999999999999999


Q ss_pred             CCCCCCcccccccccccccccch
Q 000609         1081 PYEKKEGDDSLASERQTWLADES 1103 (1393)
Q Consensus      1081 p~~s~~~~~a~~~~~k~yLpd~~ 1103 (1393)
                      +..+.    + -...++|+|+++
T Consensus      1101 ~~~~k----n-~~~~k~~i~e~~ 1118 (1266)
T KOG1525|consen 1101 SPKDK----N-FINNKIYIPEET 1118 (1266)
T ss_pred             Ccchh----h-hccccccCCchh
Confidence            97752    2 235899999993

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1393
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-16
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 5e-05
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 88.0 bits (217), Expect = 1e-17
 Identities = 94/638 (14%), Positives = 201/638 (31%), Gaps = 138/638 (21%)

Query: 507  HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 563
            H D +  E Q   K IL  F             E+ F+      + +   +     D   
Sbjct: 6    HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41

Query: 564  SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 611
                  +    D ++    A         TL  K   ++  ++ V+E+L          +
Sbjct: 42   -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98

Query: 612  EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 667
            +   ++ S   +      D L      F+   +  +  +    L++    ++     ++ 
Sbjct: 99   KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156

Query: 668  --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 703
                     +A                       L   +S   +L  L++L  +      
Sbjct: 157  GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 704  KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 754
              + H+     +   +++ L  L     Y+   LV   ++      A   +L C  +   
Sbjct: 215  SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268

Query: 755  PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 814
             +  TR  ++ +F+ +        + + +     D  +  LLK    +      LP +  
Sbjct: 269  -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323

Query: 815  HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 861
               P    ++   ++  L+           +++  IESS   ++ A  R +    +V   
Sbjct: 324  TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 862  SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 921
                   IP  +  L       S      + ++K+H+Y    L++ K        I    
Sbjct: 384  ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI---- 428

Query: 922  SPE-FEEEKQNLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDI 979
             P  + E K  L +   +H  +     I    D++     P Y+  Y      HH   +I
Sbjct: 429  -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNI 484

Query: 980  DECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE-- 1033
            +  + +  F +V+    F+   + H      +  S   ++  +      I  +    E  
Sbjct: 485  EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 1034 --DIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 1069
               I+D       + IC     +  R++ M ++   +F
Sbjct: 545  VNAILDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1393
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 3e-04
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 5e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 0.002
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1393
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.55
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.47
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.47
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.46
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.13
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.75
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.74
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.69
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.57
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.52
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.28
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.78
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.75
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.73
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.65
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.16
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.07
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.02
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.99
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.65
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.3
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.83
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 93.6
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 92.94
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 92.72
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 92.13
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 91.89
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.91
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 90.79
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 90.47
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 87.73
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-09  Score=78.89  Aligned_cols=367  Identities=14%  Similarity=0.147  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999863179994313873899999732021105898203899999887887521999999915899999999982
Q 000609           29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGT  108 (1393)
Q Consensus        29 rL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~~LkdIF~l~v~q  108 (1393)
                      |...+.+-+..+.++....+.+..+.+...|.+  +|.-++.+||..+.-||..+..- .     ..+++..+...++..
T Consensus        20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~-~-----~~~~~~~l~~~L~~~   91 (1207)
T d1u6gc_          20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSK-V-----KEYQVETIVDTLCTN   91 (1207)
T ss_dssp             HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTT-S-----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHH-C-----CHHHHHHHHHHHHHH
T ss_conf             999999999987230144576889999999999--96799879999999999999976-7-----686699999999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             26998889987246999999997-432532101698-4189999999999742389814099999999999960234465
Q 000609          109 FSGLKDTGGPSFGRRVVILETLA-KYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQ  186 (1393)
Q Consensus       109 l~~L~d~~~p~f~q~~~lLe~la-~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~iI~Ese~ip  186 (1393)
                      +.   +.+...-.-....|.++- +.-..  ...-. ...+...+...+.+.........+.....+++..++.-....-
T Consensus        92 l~---~~~~~~r~~~~~~L~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l  166 (1207)
T d1u6gc_          92 ML---SDKEQLRDISSIGLKTVIGELPPA--SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL  166 (1207)
T ss_dssp             TT---CSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HC---CCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56---896326599999999999966320--0231127889999999998763477778999999999999998756766


Q ss_pred             ----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             ----889999999613798578999999999996554-----46999999997305999998873038899999984163
Q 000609          187 ----EDLLVILLSALGRNKNDTARRLAMNVIEQCAGK-----LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP  257 (1393)
Q Consensus       187 ----~~vLd~IL~~l~~~~~~~a~~lA~~ii~~~~dk-----L~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P  257 (1393)
                          .+++..++..+...+ ..-++-|...+..-+..     +...+...+..+....+  ......+-..+-.|.+..|
T Consensus       167 ~~~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~~l~~l~~~~~  243 (1207)
T d1u6gc_         167 VNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS--MSTTRTYIQCIAAISRQAG  243 (1207)
T ss_dssp             TTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS--SCSCTTHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCC
T ss_conf             8779999999998808999-899999999999999877998799999999998705998--8999999999999998761


Q ss_pred             HHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHH-----------------------
Q ss_conf             134----41232120123578868999999999986258998701003999999982-----------------------
Q 000609          258 QIL----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK-----------------------  310 (1393)
Q Consensus       258 ~lL----~~ViP~Le~eL~aed~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~-----------------------  310 (1393)
                      ..+    ..++|.+...+..++.++|..|.+.++.+...-+..+...++.++...+.                       
T Consensus       244 ~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~  323 (1207)
T d1u6gc_         244 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD  323 (1207)
T ss_dssp             GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             54677799999999988258617778999999999998674654455999999999987407300034678877655540


Q ss_pred             --------------CCCCCCHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             --------------0069991299999999688772199999--867899999877079536899999999999643215
Q 000609          311 --------------RLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL  374 (1393)
Q Consensus       311 --------------R~~D~s~~VR~~~v~~~~~iL~~~p~~~--~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l  374 (1393)
                                    -..|.+..||...+++...++.+.|...  ...++.+.+..++.|.++.||.+++.++..+.....
T Consensus       324 ~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~  403 (1207)
T d1u6gc_         324 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR  403 (1207)
T ss_dssp             ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             11013566788875220133899999999998689888999999999999999998459854899999999999997303


Q ss_pred             CCC----------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             888----------------------9888999997603689269999999999999986
Q 000609          375 NSI----------------------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC  411 (1393)
Q Consensus       375 ~~v----------------------~~e~L~~l~eR~rDKK~~VR~eAi~~La~LY~~~  411 (1393)
                      ...                      -..++..+...++++...+|..++..+..+....
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~  462 (1207)
T d1u6gc_         404 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL  462 (1207)
T ss_dssp             CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             21255515488876302699999876999999999864886567888999999999972
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure