Citrus Sinensis ID: 000733

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320----
MATPTRIEIEEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFTLSDAEDDVPAVVPVDSNLPRVYSGSGLQKIEPVASSFKSQGVKLKELDTDDTCGVTAKSNLKGFDKYESSTSISISNSQELENKDRQQIQNSLQKSTNLVQSPPKASLPEVTSFGVRDSSKTGTQDTGGFGLGSTGFVGKFPTDTPSLSSHKDLLKSLEFGKEAQGNFGSAGLQSLSSQSQSCGNFISSEDSRVKLPVLPSSHSHEKTYENSSLGAPNVSGSFVGKPLSSKDATGSLTPVFSAKPVHGDGDRASTGAGKIESLPSVRSSQFSLPQNFASGKSHNQKLYPSKDDYKTATLSGLPNSEPNLSKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELELKRGHILSINQDLINQLIELERHFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQIAAAEQLSDRLSKQMALLSIESPVKQQNVKKELFETLGIPYDASFSSPDVTKVMDQSSIKKLIHSSGSAAANDQSRRRQSSAMKSYDPETARRRRDSLDRSWASFEPPKTTVKRMLLQDHQKCSQVKSSLKDKQQISPHMLEGAAIVRPKDRTTPSTSWNPLRIKGLQDASLKQTSESQSTLFKWAGDPTGPSQMTGLKSPVFQSNIASTRSSLSATQLSPMGWQNHARNTGDVTAEKLSSGVYFDVKSNSTLTNETKSTMQSESNIFQKPTISTMSPTLTPSLLKNPSEMPISNGKGTVPESSTIGSEKHGAATTKTLFVESGKNRDAQVSTPAAVPTSSAFPGIVPIFDAANKSQPGGKSFTPSTFSLSLSASSSPMEEFQVDWHLEARLISQA
ccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEccccEEEEEEcccEEEEEEEHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccEEEEEEcccccEEEEEEcHHccccccccEEEEccccccEEEEEEccccccEEEEEEEcccEEEEEcccccccccccccEEEEEccccEEEEEEccEEEEEccccccccccccccccccccccccccEEEEEEEEEcccEEEEEEEEcccccccccEEEEEEEccccccccccccccEEEcccccccccccccccccccEEEEcccccccEEEEEcccccccEEEEEEEccccccccEEEEEccccccccEEccccccccccEEEEEEEEcccccEEEcccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccc
cccccEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEcHHHHHHHHHccccccccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEHHHHHccccccccEEccccccEEEEccccccccccEEEEEcccEEEEccccccHHHHcccccEEEEcccccEEEEEEccEEEEccHHHHcEEEcccccccccccccccccEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEcccccccccccccEEEEEcccccccHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccEEEEEEEEcEEEEEEEEEEccccHcccccccEEEEEEcccEEEEEEEEEEcccccccccccccccHHcccccccccccccccEccccccccccccccccccccccHHHHccccccccHccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHEEEcccccccccccccccccHHccccHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHEEcHHHHHHHHccc
MATPTRIEIEEeieggriesndfffdeigesipiirdddsqfdlqnppslplAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKengtrccvqelsvvdvpfenenvdilslsndesTLAVSLyqsphihffSVHSLlnkeikpsfscslngstyvkdirwrkkpensflalsnvgrlyrggvngpledvmdNVDAVEWSVKGKFVAVAKKNVLSILTSKlkerlpislsfkswvgdcdvncsvkvdsirwvrRDCIIIgcfqltedgkeeNYLVQVIQSkdgkitdassepvvlSFSDVFSdviddilpsgtgpyLFLTYVERWGLAISANRKNIDDHVVLLRWslddekndiavvdinrdkwipriklqdngndnlIMGLCIDKVSLCGKVKVQLgveekelspYFILMCLTLDGKLNMFHVAsvsgpscspdvdftlsdaeddvpavvpvdsnlprvysgsglqkiepvassfksqgvklkeldtddtcgvtaksnlkgfdkyesstsisisnsqeleNKDRQQIQNSLQKstnlvqsppkaslpevtsfgvrdssktgtqdtggfglgstgfvgkfptdtpslssHKDLLKSLEFgkeaqgnfgsaglqslssqsqscgnfissedsrvklpvlpsshshektyensslgapnvsgsfvgkplsskdatgsltpvfsakpvhgdgdrastgagkieslpsvrssqfslpqnfasgkshnqklypskddyktatlsglpnsepnlskqsgNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIvkqasdsrywdlwnrqklspelelkrghILSINQDLINQLIELERHFNSLelnkfgendgvhgcqrrpqsrfgtsrhIQSLHSLHTTMSSQIAAAEQLSDRLSKQMALLSIESPVKQQNVKKELFEtlgipydasfsspdvtkvmDQSSIKKLIHssgsaaandqsrrrqssamksydpetarRRRDSLdrswasfeppktTVKRMLLQDHQkcsqvksslkdkqqisphmlegaaivrpkdrttpstswnplrikglqdaslkqTSESQSTLFkwagdptgpsqmtglkspvfqsniastrsslsatqlspmgwqnharntgdvtaeklssgvyfdvksnstltnetkstmqsesnifqkptistmsptltpsllknpsempisngkgtvpesstigsekhgaatTKTLFVEsgknrdaqvstpaavptssafpgivpifdaanksqpggksftpstfslslsassspmeefQVDWHLEARLISQA
matptrieieeeieggriesndfFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPensflalsnvgrlyrGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSIltsklkerlpislsfkswvgdcdvNCSVKvdsirwvrrDCIIIGcfqltedgkeeNYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRwslddekndiavvdinrdkwipriklqdngndNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFTLSDAEDDVPavvpvdsnlprvysgsglqkiepvassfksqgvklkeldtddtcgvtaksnlkgfdkyesSTSISISNSQELENKDRQQIQNSLQkstnlvqsppkaslpevtsfgvrdssktgtqdtggfglGSTGFVGKFPTDTPSLSSHKDLLKSLEFGKEAQGNFGSAGLQSLSSQSQSCGNFISSEDSRVKLPVLPSSHSHEKtyensslgapnvsGSFVGKPLSSKDATGSLTPVfsakpvhgdgdrASTGAGKIESLPSVRSSQFSLPQNfasgkshnqklypSKDDYKTATlsglpnsepnlskqsgNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEEleegigslsekcGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEgivkqasdsrywdLWNRQKLSpelelkrgHILSINQDLINQLIELERHFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQIAAAEQLSDRLSKQMALLSiespvkqqNVKKELFETLGipydasfsspdVTKVMDQSSIKKLihssgsaaandqsrrrqssamksydpetarrrrdsldrswasfeppkttvkrMLLQDHQKCSQVKsslkdkqqisphmlegaaivrpkdrttpstswnplrikGLQDASLKQTSESQSTLFKWAGDPTGPSQMTGLKSPVFQSNIASTRSSLSATQLSPMGWQNHARNTGDVTAEKLSSGVYFDVksnstltnetkstmqsesnifqkptistmspTLTPSLLKNPSEMPISNGKGTVPEsstigsekhgaaTTKTLFVESGKNRDAQVSTPAAVPTSSAFPGIVPIFDAANKSQPGGKSFTPSTFSLSLSASSSPMEEFQVDWHLEARLISQA
MATPTrieieeeieggrieSNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPvvlsfsdvfsdviddilPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFTLSdaeddvpavvpvdSNLPRVYSGSGLQKIEPVASSFKSQGVKLKELDTDDTCGVTAKSNLKGFDKYEsstsisisnsQELENKDRQQIQNSLQKSTNLVQSPPKASLPEVTSFGVRDSSKTGTQDtggfglgstgfvgKFPTDTPslsshkdllkslEFGKEAQGNFGSAGlqslssqsqsCGNFISSEDSRVKLPVLPSSHSHEKTYENSSLGAPNVSGSFVGKPLSSKDATGSLTPVFSAKPVHGDGDRASTGAGKIESLPSVRSSQFSLPQNFASGKSHNQKLYPSKDDYKTATLSGLPNSEPNLSKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVeeleegigslseKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELELKRGHILSINQDLINQLIELERHFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQIAAAEQLSDRLSKQMALLSIESPVKQQNVKKELFETLGIPYDASFSSPDVTKVMDQSSIKKLIHSSGSAAANDQSRRRQSSAMKSYDPETARRRRDSLDRSWASFEPPKTTVKRMLLQDHQKCSQVKSSLKDKQQISPHMLEGAAIVRPKDRTTPSTSWNPLRIKGLQDASLKQTSESQSTLFKWAGDPTGPSQMTGLKSPVFQSNIASTRSSLSATQLSPMGWQNHARNTGDVTAEKLSSGVYFDVKSNSTLTNETKSTMQSESNIFQKPTISTMSPTLTPSLLKNPSEMPISNGKGTVPESSTIGSEKHGAATTKTLFVESGKNRDAQVSTPAAVPTSSAFPGIVPIFDAANKSQPGGKsftpstfslslsassspMEEFQVDWHLEARLISQA
*****************IESNDFFFDEIGESIPIIRD************LPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFTL********AVVPV***********************************************************************************************************************************************************************************************************************************************************************************************************************LLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELELKRGHILSINQDLINQLIELERHFNSLELNKFGEN*****************************************************************LFETLGIPY**********************************************************************************************************************************************************************************************************YF***************************************************************************************************GIVPIF***********************************WH*********
*******************SNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVID***************ELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL***************TYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLK**L*ISLS*KSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTE***EENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCG***********ELSPYFILMCLTLDGKLNMFHVASVSGP*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLINQLIELERHFNSL******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************WHLEARLIS**
MATPTRIEIEEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFTLSDAEDDVPAVVPVDSNLPRVYSGSGLQKIEPVASSFKSQGVKLKELDTDDTCGVTAKSNLKGFDKYESSTSISISNSQELENKDRQQIQNSLQKSTNLVQSPPKASLPEVTSFGVRDSSKTGTQDTGGFGLGSTGFVGKFPTDTPSLSSHKDLLKSLEFGKEAQGNFGSAGLQSLSSQSQSCGNFISSEDSRVKLPVLPS************LGAPNVSGSFVGKPLSSKDATGSLTPVFSAKPVHGDGDRASTGAGKIESLPSVRSSQFSLPQNFASGKSHNQKLYPSKDDYKTATLSGLPNSEPNLSKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELELKRGHILSINQDLINQLIELERHFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQIAAAEQLSDRLSKQMALLSIESPVKQQNVKKELFETLGIPYDASFSSPDVTKVMDQSSIKKL***********************************LDRSWASFEPPKTTVKRMLLQDH**************QISPHMLEGAAIVRPKDRTTPSTSWNPLRIKGLQD***********TLFKWAGDPTGPSQMTGLKSPVFQSNIASTRSSLSATQLSPMGWQNHARNTGDVTAEKLSSGVYFDVKSNSTLTN*********SNIFQKPTISTMSPTLTPSLLKNPSEMPISNGKGTVPESSTIGSEKHGAATTKTLFVESG**************TSSAFPGIVPIFDAANKSQPGGKSFTPSTFSL***********FQVDWHLEARLISQA
****TRIEIEEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGP***************************************************************************************QELENK******************************G*R***************************************************************************************************************************************************************************************GLPNSEPNLSKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELELKRGHILSINQDLINQLIELERHFNSLELNKF***********************QSLHSLHTTMSSQIAAAEQLSDRLSKQMALLSIESPVKQQNVKKELFETLGIPYDAS*****************************************************LDRSWASFEPPKTTVKRMLLQDHQKC***********************************************************************************************************************VYFDVKSNSTLTNETK***************************************************************************************IVP****AN*********************SSPMEEFQVDWHLEARLISQA
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MATPTRIEIEEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFTLSDAEDDVPAVVPVDSNLPRVYSGSGLQKIEPVASSFKSQGVKLKELDTDDTCGVTAKSNLKGFDKYESSTSISISNSQELENKDRQQIQNSLQKSTNLVQSPPKASLPEVTSFGVRDSSKTGTQDTGGFGLGSTGFVGKFPTDTPSLSSHKDLLKSLEFGKEAQGNFGSAGLQSLSSQSQSCGNFISSEDSRVKLPVLPSSHSHEKTYENSSLGAPNVSGSFVGKPLSSKDATGSLTPVFSAKPVHGDGDRASTGAGKIESLPSVRSSQFSLPQNFASGKSHNQKLYPSKDDYKTATLSGLPNSEPNLSKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELELKRGHILSIxxxxxxxxxxxxxxxxxxxxxKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQxxxxxxxxxxxxxxxxxxxxxSPVKQQNVKKELFETLGIPYDASFSSPDVTKVMDQSSIKKLIHSSGSAAANDQSRRRQSSAMKSYDPETARRRRDSLDRSWASFEPPKTTVKRMLLQDHQKCSQVKSSLKDKQQISPHMLEGAAIVRPKDRTTPSTSWNPLRIKGLQDASLKQTSESQSTLFKWAGDPTGPSQMTGLKSPVFQSNIASTRSSLSATQLSPMGWQNHARNTGDVTAEKLSSGVYFDVKSNSTLTNETKSTMQSESNIFQKPTISTMSPTLTPSLLKNPSEMPISNGKGTVPESSTIGSEKHGAATTKTLFVESGKNRDAQVSTPAAVPTSSAFPGIVPIFDAANKSQPGGKSFTPSTFSLSLSASSSPMEEFQVDWHLEARLISQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1324 2.2.26 [Sep-21-2011]
P35658 2090 Nuclear pore complex prot yes no 0.271 0.172 0.241 5e-08
Q80U93 2085 Nuclear pore complex prot yes no 0.269 0.171 0.237 5e-05
>sp|P35658|NU214_HUMAN Nuclear pore complex protein Nup214 OS=Homo sapiens GN=NUP214 PE=1 SV=2 Back     alignment and function desciption
 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 188/439 (42%), Gaps = 79/439 (17%)

Query: 19  ESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDV 78
           E  DF F  + +    +R  DS  +L    S  LAVS   + L+FA  +SG  +  T ++
Sbjct: 13  EMKDFQFRALKK----VRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQIFPTKNL 67

Query: 79  IDAAKEMKE-NGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH---IHFF 134
           +   K   + N     VQ L +V + F    +  L+LS D  TL+  +  S +   I FF
Sbjct: 68  LIQNKPGDDPNKIVDKVQGL-LVPMKFP---IHHLALSCDNLTLSACMMSSEYGSIIAFF 123

Query: 135 SVHSLLN--KEIKPSFSCSL---NGSTYVKDIRWRKK-PE-------NSFLALSNVGRLY 181
            V +  N  K+ K  F+      +    V D++W    P        +  +A+  V    
Sbjct: 124 DVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183

Query: 182 RGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKSWVG 238
           +  V   L   +  V +V WS KGK +AV K+N   V  + T + K+ +P    ++S   
Sbjct: 184 K--VCATLPSTVA-VTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES--- 237

Query: 239 DCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGKITDASSEPV 295
               +  V+V  + W+     +        DG  E   + ++ ++  K+ K         
Sbjct: 238 ----DHPVRVLDVLWI--GTYVFAIVYAAADGTLETSPDVVMALLPKKEEK--------- 282

Query: 296 VLSFSDVFSDVIDDILPSGT--GPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEK 353
                ++F + ++    S T    + +L+Y+E W L ++A+  + +  V +L    D   
Sbjct: 283 ---HPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE--VSILARQSD--- 334

Query: 354 NDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELS 407
                  IN + W+        + + D  +D+L MG+ +D      +V++ +  +EK L 
Sbjct: 335 ------QINWESWLLEDSSRAELPVTDKSDDSLPMGVVVD---YTNQVEITIS-DEKTLP 384

Query: 408 PYFILMCLTLDGKLNMFHV 426
           P  +LM L+ DG L  F++
Sbjct: 385 PAPVLMLLSTDGVLCPFYM 403
May serve as a docking site in the receptor-mediated import of substrates across the nuclear pore complex.
Homo sapiens (taxid: 9606)
>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1324
297746515 1685 unnamed protein product [Vitis vinifera] 0.933 0.733 0.522 0.0
255564792 1824 nuclear pore complex protein nup153, put 0.952 0.691 0.500 0.0
359478820 1696 PREDICTED: uncharacterized protein LOC10 0.889 0.694 0.499 0.0
334183347 1816 Nuclear pore complex protein [Arabidopsi 0.895 0.652 0.445 0.0
334183349 1819 Nuclear pore complex protein [Arabidopsi 0.895 0.651 0.444 0.0
4204261 1804 Hypothetical protein [Arabidopsis thalia 0.895 0.656 0.443 0.0
297853258 1825 hypothetical protein ARALYDRAFT_337635 [ 0.898 0.652 0.443 0.0
449458781 2161 PREDICTED: uncharacterized protein LOC10 0.900 0.551 0.424 0.0
356569182 1825 PREDICTED: uncharacterized protein LOC10 0.753 0.546 0.415 0.0
414888159 1735 TPA: hypothetical protein ZEAMMB73_62426 0.859 0.655 0.358 1e-167
>gi|297746515|emb|CBI16571.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1192 bits (3084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1327 (52%), Positives = 875/1327 (65%), Gaps = 91/1327 (6%)

Query: 1    MATP-TRIEIE-EEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNP-PSLPLAVSQL 57
            MATP + I++E +++EGGR++ +D+ F +IGES+  I+     F+L +P PS PLAVS+ 
Sbjct: 1    MATPESVIDLEGKDLEGGRLDCDDYVFVKIGESV-TIKPQYYNFNLDSPLPSQPLAVSER 59

Query: 58   SHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSND 117
            S QLIF AHS GFCVART  VI+ AKE+KE G+   +QELSVVDVP  N  V IL+LS D
Sbjct: 60   S-QLIFVAHSDGFCVARTEAVIELAKEIKEKGSGSSIQELSVVDVPIAN--VRILALSTD 116

Query: 118  ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV 177
             STLA S+     IHFFSV SLLNK  +PSF+ SL+GS+ VKD+RWRKK +NS++ LS+ 
Sbjct: 117  SSTLAASV--GGDIHFFSVDSLLNKGQEPSFTRSLSGSSSVKDMRWRKKMDNSYVVLSSD 174

Query: 178  GRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWV 237
            G+LY G   GPL+DVMD VDAVEWSVKG  +AVA+KN LS+L+SK KERL +SLSFKSW+
Sbjct: 175  GKLYHGAAEGPLKDVMDGVDAVEWSVKGNSIAVARKNTLSLLSSKFKERLCMSLSFKSWI 234

Query: 238  GDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVL 297
            GD  VNC+VKVDSIRWVR DCII+GCF+LT DGKEE+++VQV+ SK+GKITDASS P VL
Sbjct: 235  GDSGVNCTVKVDSIRWVRPDCIILGCFKLTADGKEESFMVQVVTSKEGKITDASSLPTVL 294

Query: 298  SFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIA 357
            SF DVF  ++DDI+P G+GPYLFL+Y+E+  LAI+ +RKN+D+H+VL  WSLDD+KN+ A
Sbjct: 295  SFYDVFPGLVDDIVPFGSGPYLFLSYLEQCQLAITTSRKNVDNHIVLFGWSLDDKKNEAA 354

Query: 358  VVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEE-KELSPYFILMCLT 416
            ++DI RDK+ PRI+LQ+N +DNLI+GLC DKVSL GKV++QLG EE +ELSPY +L CLT
Sbjct: 355  ILDIGRDKYRPRIELQENDDDNLILGLCCDKVSLYGKVEIQLGAEEPRELSPYCVLFCLT 414

Query: 417  LDGKLNMFHVASVSGPSCSPDVDFT-LSDAEDDVPAVVPVDSNLPRVYSGSGLQKIEPVA 475
            L+GKL MF VASV+G + +P  D + L+  ED+ PA  PV+ +                 
Sbjct: 415  LEGKLVMFQVASVTG-TPAPTQDLSPLTGDEDETPAEAPVEHD----------------- 456

Query: 476  SSFKSQGVKLKELDTDDTCGVTAKSNLKGFDKYESSTSISIS------------------ 517
               +S+    KE+       +  K++L  F + +S  S  I+                  
Sbjct: 457  ---QSREANTKEISIKQEGEILIKNDLNTFQENKSLISACIADQILHKETIAADHEAKSL 513

Query: 518  -NSQELENKDRQQI------------QNSL--QKSTNLVQSPPKASLPEVTSFGVRDSSK 562
             NSQ  E   +Q++            Q+ L  Q+STNL  S  K S  E     V D  K
Sbjct: 514  VNSQTFEADGQQRVSTIKLYQEVDGKQSGLPRQQSTNLEGSSLKTSPLEGLGNVVGDVKK 573

Query: 563  TGTQDTGGFGLGSTGFVGKFPTDTPSLSSHKDLLKSLEFGKEAQGNFGSAGLQSLSSQSQ 622
            T  Q            +    +   S  S  +  +S E  KE  G  GS  LQ+ +SQS 
Sbjct: 574  TDIQK-----------ITGVGSGLGSSQSSHNFSRSFETHKELPGKIGSTNLQN-ASQSW 621

Query: 623  SCGNFISSEDSRVKLPVLPSSHSHEKTYENS--SLGAPNVSGSFVGKPLSSKDATGSLTP 680
            S G F   + +  KL  L SS       E +  +L  P V G  VG P+  KDA  SL  
Sbjct: 622  SGGKFTFPKSTEEKL-SLSSSFVESGRSETAGINLSIPQVPGGPVGSPIYPKDAATSLAA 680

Query: 681  VFSAKPVHGDGDRASTGAGKIESLPSVRSSQFSLPQNFASGKSHNQKLYPSKDDYKTATL 740
                +     G R S  AG +E + S   SQ S+ +NF + KS N K YP K++Y+T  L
Sbjct: 681  GNFGRISQSRGQRGSMVAGNVEPISSTLGSQLSMQENFPA-KSPNYKSYPPKENYRTPPL 739

Query: 741  SGLPNSEPNLSKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLS 800
             G  NSEPNLSKQ GN+KEM KELD LLQ IE  GGFRDACT+FQ+  V ELE+GIG+LS
Sbjct: 740  QGQLNSEPNLSKQFGNVKEMAKELDTLLQCIEGPGGFRDACTIFQKSSVMELEQGIGTLS 799

Query: 801  EKCGMWRSIMDERLQEIQNLFDKTVQVLARKIYTEGIVKQASDSRYWDLWNRQKLSPELE 860
            E C MWRSI+D++  EI +L DKTVQVLARK+Y +GIVKQA+DSRYWDLW+RQKL+ ELE
Sbjct: 800  ENCRMWRSIIDQQHGEIHHLLDKTVQVLARKVYMQGIVKQATDSRYWDLWSRQKLASELE 859

Query: 861  LKRGHILSINQDLINQLIELERHFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHS 920
            LKR +IL INQDL NQLIELERHFN++ELNKFGEN G H  +R  QSR G SRH+QSLHS
Sbjct: 860  LKRRNILKINQDLTNQLIELERHFNAIELNKFGENGGNHVGRRALQSRSGPSRHMQSLHS 919

Query: 921  LHTTMSSQIAAAEQLSDRLSKQMALLSIESPVKQQNVKKELFETLGIPYD-ASFSSPDVT 979
            LH TM+SQ+AAAEQLS+ LSKQM +LSI+S VK+QNVKKELFE +GIPYD AS SSP ++
Sbjct: 920  LHNTMNSQLAAAEQLSECLSKQMTMLSIDSTVKKQNVKKELFEAIGIPYDSASVSSPTIS 979

Query: 980  KVMDQSSIKKLIHSSGSAAANDQSRRRQSSAMKSYDPETARRRRDSLDRSWASFEPPKTT 1039
               D  S+K  + SS S+A  DQSRR Q SA+KSY+PET RRRRDSL +SWA+FEPPKT 
Sbjct: 980  NTSDTPSMKNFLVSS-SSANKDQSRRNQLSALKSYEPETVRRRRDSLGQSWANFEPPKTI 1038

Query: 1040 VKRMLLQDHQKCSQVKSSLK-DKQQISPHMLEGAAIVRPKDRTTPSTSWNPLRIKGLQDA 1098
            VKRM+L++ QK    K S   DK+Q SPH LEG+A     + TTPS    P R KG+ + 
Sbjct: 1039 VKRMVLEEQQKVGVNKPSFSVDKRQFSPHKLEGSAFAYSNNNTTPSAFLYPSRNKGIHEI 1098

Query: 1099 SLKQTSESQST-LFKWAGDPTGPSQMTGLKSP---VFQSNIASTRSSLSATQLSPMGWQN 1154
            S KQ S S ST LF+WA DP+GPSQ  G +SP       N  S  SSLSA Q SP+  Q+
Sbjct: 1099 SAKQASYSPSTSLFRWANDPSGPSQSFGSRSPTPHALPGNNLSAFSSLSAPQSSPVVDQS 1158

Query: 1155 HARNTGDVTAEKLSSGVYFDVKSNSTLTNETKSTMQSESNIFQKPTISTMSPTLTPSLLK 1214
            +A  T ++T E+ SSGV F  KS++   NETKST+ SES++ Q P IST  P  T  L K
Sbjct: 1159 NAMETCNLTNERSSSGVTFVEKSDAVSINETKSTLLSESHLPQTPIISTSLPARTLPLTK 1218

Query: 1215 NPSEMPISNGKGTVPESSTIGSEKHGAATTKTLFVESGKNRDAQVSTPAAVPTSSAFPGI 1274
             P+EM  SNGKGTV    TIGS K    +  + F +SG +  + +S   AV  + + PG 
Sbjct: 1219 KPNEMSNSNGKGTVLAKPTIGSVKQKPVSPGSSFSQSGVSPFSPIS---AVQPAPSLPGK 1275

Query: 1275 VPIFDAA 1281
            V   D A
Sbjct: 1276 VFQLDIA 1282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564792|ref|XP_002523390.1| nuclear pore complex protein nup153, putative [Ricinus communis] gi|223537340|gb|EEF38969.1| nuclear pore complex protein nup153, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359478820|ref|XP_002283769.2| PREDICTED: uncharacterized protein LOC100245011 [Vitis vinifera] Back     alignment and taxonomy information
>gi|334183347|ref|NP_564694.2| Nuclear pore complex protein [Arabidopsis thaliana] gi|332195141|gb|AEE33262.1| Nuclear pore complex protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183349|ref|NP_001117499.2| Nuclear pore complex protein [Arabidopsis thaliana] gi|332195142|gb|AEE33263.1| Nuclear pore complex protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4204261|gb|AAD10642.1| Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297853258|ref|XP_002894510.1| hypothetical protein ARALYDRAFT_337635 [Arabidopsis lyrata subsp. lyrata] gi|297340352|gb|EFH70769.1| hypothetical protein ARALYDRAFT_337635 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449458781|ref|XP_004147125.1| PREDICTED: uncharacterized protein LOC101219502 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356569182|ref|XP_003552784.1| PREDICTED: uncharacterized protein LOC100794048 [Glycine max] Back     alignment and taxonomy information
>gi|414888159|tpg|DAA64173.1| TPA: hypothetical protein ZEAMMB73_624267 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1324
MGI|MGI:1095411 2085 Nup214 "nucleoporin 214" [Mus 0.075 0.047 0.284 2.1e-11
UNIPROTKB|F1MH31 2074 NUP214 "Uncharacterized protei 0.074 0.047 0.299 4.4e-08
UNIPROTKB|F1S0W9 2081 NUP214 "Uncharacterized protei 0.075 0.048 0.293 2e-07
UNIPROTKB|P35658 2090 NUP214 "Nuclear pore complex p 0.075 0.047 0.275 1.6e-06
CGD|CAL0006203 768 orf19.4906 [Candida albicans ( 0.290 0.501 0.219 1.6e-06
UNIPROTKB|Q5APQ2 768 CaO19.4906 "Putative uncharact 0.290 0.501 0.219 1.6e-06
RGD|1304977 2067 Nup214 "nucleoporin 214" [Ratt 0.075 0.048 0.284 3.6e-06
POMBASE|SPBC215.13534 SPBC215.13 "sequence orphan" [ 0.293 0.726 0.206 1.4e-05
WB|WBGene00013498 1489 Y70G10A.2 [Caenorhabditis eleg 0.261 0.232 0.257 8.2e-05
FB|FBgn0036203 1514 Muc68D "Mucin 68D" [Drosophila 0.275 0.241 0.237 0.00036
MGI|MGI:1095411 Nup214 "nucleoporin 214" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 99 (39.9 bits), Expect = 2.1e-11, Sum P(5) = 2.1e-11
 Identities = 31/109 (28%), Positives = 59/109 (54%)

Query:   318 YLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGN 377
             + +L+Y+E W L ++A+  + +  + L R +         + D +R + +P   + D  +
Sbjct:   304 HYYLSYIEEWDLVLAASAASTEVSI-LARQNDQTNWESWLLEDSSRAE-LP---VTDKSD 358

Query:   378 DNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHV 426
             D+L MG+ ID  +   +V+V +  EEK L P  +L+ L+ DG L  F++
Sbjct:   359 DSLPMGVAIDYTN---EVEVTIN-EEKTLPPAPVLLLLSTDGVLCPFYM 403
GO:0005487 "nucleocytoplasmic transporter activity" evidence=IMP
GO:0005634 "nucleus" evidence=IEA
GO:0005643 "nuclear pore" evidence=TAS
GO:0006406 "mRNA export from nucleus" evidence=IMP
GO:0006606 "protein import into nucleus" evidence=IMP
GO:0006611 "protein export from nucleus" evidence=ISO
GO:0006810 "transport" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0051028 "mRNA transport" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IMP
UNIPROTKB|F1MH31 NUP214 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0W9 NUP214 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P35658 NUP214 "Nuclear pore complex protein Nup214" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
RGD|1304977 Nup214 "nucleoporin 214" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00013498 Y70G10A.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024855001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1103 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1324
KOG36301405 consensus Nuclear pore complex, Nup214/CAN compone 100.0
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.21
PTZ00421493 coronin; Provisional 98.97
KOG1274933 consensus WD40 repeat protein [General function pr 98.62
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.6
PTZ00420568 coronin; Provisional 98.6
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.59
KOG0973942 consensus Histone transcription regulator HIRA, WD 98.54
KOG0318603 consensus WD40 repeat stress protein/actin interac 98.54
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.46
KOG0266456 consensus WD40 repeat-containing protein [General 98.41
PLN00181793 protein SPA1-RELATED; Provisional 98.39
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.36
KOG1407313 consensus WD40 repeat protein [Function unknown] 98.34
KOG0269839 consensus WD40 repeat-containing protein [Function 98.31
KOG0296399 consensus Angio-associated migratory cell protein 98.27
KOG0315311 consensus G-protein beta subunit-like protein (con 98.26
PLN00181793 protein SPA1-RELATED; Provisional 98.23
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 98.17
KOG0645312 consensus WD40 repeat protein [General function pr 98.17
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 98.15
KOG0293519 consensus WD40 repeat-containing protein [Function 98.13
KOG0318603 consensus WD40 repeat stress protein/actin interac 98.07
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 98.04
KOG14451012 consensus Tumor-specific antigen (contains WD repe 98.04
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 98.01
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 97.98
KOG0266456 consensus WD40 repeat-containing protein [General 97.96
KOG14081080 consensus WD40 repeat protein [Function unknown] 97.96
PRK11028330 6-phosphogluconolactonase; Provisional 97.95
KOG0772641 consensus Uncharacterized conserved protein, conta 97.93
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 97.92
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 97.91
PTZ00420568 coronin; Provisional 97.9
KOG0294362 consensus WD40 repeat-containing protein [Function 97.88
PTZ00421493 coronin; Provisional 97.88
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 97.88
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 97.86
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 97.86
KOG2110391 consensus Uncharacterized conserved protein, conta 97.84
KOG1274933 consensus WD40 repeat protein [General function pr 97.83
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 97.81
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.78
KOG0302440 consensus Ribosome Assembly protein [General funct 97.72
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 97.72
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.71
KOG0268433 consensus Sof1-like rRNA processing protein (conta 97.7
KOG0284464 consensus Polyadenylation factor I complex, subuni 97.68
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 97.67
KOG0640430 consensus mRNA cleavage stimulating factor complex 97.67
KOG0283712 consensus WD40 repeat-containing protein [Function 97.64
KOG1407313 consensus WD40 repeat protein [Function unknown] 97.61
KOG15381081 consensus Uncharacterized conserved protein WDR10, 97.6
KOG0279315 consensus G protein beta subunit-like protein [Sig 97.59
KOG0288459 consensus WD40 repeat protein TipD [General functi 97.59
KOG0315311 consensus G-protein beta subunit-like protein (con 97.59
KOG2055514 consensus WD40 repeat protein [General function pr 97.59
KOG0639705 consensus Transducin-like enhancer of split protei 97.59
KOG2048691 consensus WD40 repeat protein [General function pr 97.55
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 97.52
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.49
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 97.45
PRK03629429 tolB translocation protein TolB; Provisional 97.43
KOG0278334 consensus Serine/threonine kinase receptor-associa 97.41
PRK05137435 tolB translocation protein TolB; Provisional 97.41
KOG0283712 consensus WD40 repeat-containing protein [Function 97.41
KOG0306888 consensus WD40-repeat-containing subunit of the 18 97.39
KOG0263707 consensus Transcription initiation factor TFIID, s 97.39
PRK11028330 6-phosphogluconolactonase; Provisional 97.39
KOG0303472 consensus Actin-binding protein Coronin, contains 97.38
KOG0310487 consensus Conserved WD40 repeat-containing protein 97.36
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 97.36
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 97.34
KOG2321703 consensus WD40 repeat protein [General function pr 97.34
KOG0279315 consensus G protein beta subunit-like protein [Sig 97.33
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 97.3
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.26
PRK03629429 tolB translocation protein TolB; Provisional 97.23
KOG1063764 consensus RNA polymerase II elongator complex, sub 97.22
KOG2110391 consensus Uncharacterized conserved protein, conta 97.22
KOG0645312 consensus WD40 repeat protein [General function pr 97.21
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 97.17
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 97.16
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 97.16
KOG0265338 consensus U5 snRNP-specific protein-like factor an 97.15
KOG0310487 consensus Conserved WD40 repeat-containing protein 97.14
KOG0306888 consensus WD40-repeat-containing subunit of the 18 97.13
KOG2106626 consensus Uncharacterized conserved protein, conta 97.13
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 97.11
KOG0268433 consensus Sof1-like rRNA processing protein (conta 97.11
KOG2096420 consensus WD40 repeat protein [General function pr 97.1
KOG0263707 consensus Transcription initiation factor TFIID, s 97.1
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 97.09
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 97.05
KOG0771398 consensus Prolactin regulatory element-binding pro 97.03
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 97.03
KOG2139445 consensus WD40 repeat protein [General function pr 97.03
KOG1539910 consensus WD repeat protein [General function pred 97.03
KOG0293519 consensus WD40 repeat-containing protein [Function 96.99
PRK01742429 tolB translocation protein TolB; Provisional 96.98
KOG0288459 consensus WD40 repeat protein TipD [General functi 96.97
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 96.95
KOG0265338 consensus U5 snRNP-specific protein-like factor an 96.94
PRK05137435 tolB translocation protein TolB; Provisional 96.93
KOG2055514 consensus WD40 repeat protein [General function pr 96.91
PRK01742429 tolB translocation protein TolB; Provisional 96.91
KOG0647347 consensus mRNA export protein (contains WD40 repea 96.9
KOG0295406 consensus WD40 repeat-containing protein [Function 96.89
PRK01029428 tolB translocation protein TolB; Provisional 96.87
PRK04922433 tolB translocation protein TolB; Provisional 96.87
KOG0302440 consensus Ribosome Assembly protein [General funct 96.81
KOG2106626 consensus Uncharacterized conserved protein, conta 96.79
KOG0284464 consensus Polyadenylation factor I complex, subuni 96.77
PRK02889427 tolB translocation protein TolB; Provisional 96.77
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 96.76
KOG2111346 consensus Uncharacterized conserved protein, conta 96.74
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 96.73
KOG0649325 consensus WD40 repeat protein [General function pr 96.68
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 96.66
KOG0275508 consensus Conserved WD40 repeat-containing protein 96.65
KOG0772641 consensus Uncharacterized conserved protein, conta 96.63
PRK02889427 tolB translocation protein TolB; Provisional 96.62
KOG0278334 consensus Serine/threonine kinase receptor-associa 96.59
KOG0646476 consensus WD40 repeat protein [General function pr 96.58
KOG0643327 consensus Translation initiation factor 3, subunit 96.57
PRK04922433 tolB translocation protein TolB; Provisional 96.55
KOG0313423 consensus Microtubule binding protein YTM1 (contai 96.55
KOG1188376 consensus WD40 repeat protein [General function pr 96.55
KOG0289506 consensus mRNA splicing factor [General function p 96.53
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 96.52
PRK00178430 tolB translocation protein TolB; Provisional 96.51
KOG0275508 consensus Conserved WD40 repeat-containing protein 96.49
KOG0289506 consensus mRNA splicing factor [General function p 96.49
KOG2315566 consensus Predicted translation initiation factor 96.44
PRK04792448 tolB translocation protein TolB; Provisional 96.39
KOG2048691 consensus WD40 repeat protein [General function pr 96.38
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 96.36
KOG1273405 consensus WD40 repeat protein [General function pr 96.36
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 96.33
KOG0319775 consensus WD40-repeat-containing subunit of the 18 96.31
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 96.29
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 96.28
KOG0641350 consensus WD40 repeat protein [General function pr 96.25
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 96.23
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 96.23
KOG0973942 consensus Histone transcription regulator HIRA, WD 96.23
KOG2096420 consensus WD40 repeat protein [General function pr 96.23
KOG0643327 consensus Translation initiation factor 3, subunit 96.21
KOG0640430 consensus mRNA cleavage stimulating factor complex 96.17
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.17
KOG1063764 consensus RNA polymerase II elongator complex, sub 96.16
KOG0286343 consensus G-protein beta subunit [General function 96.15
KOG14451012 consensus Tumor-specific antigen (contains WD repe 96.07
KOG0299479 consensus U3 snoRNP-associated protein (contains W 96.05
KOG0296399 consensus Angio-associated migratory cell protein 95.98
COG2319466 FOG: WD40 repeat [General function prediction only 95.94
KOG0308735 consensus Conserved WD40 repeat-containing protein 95.93
KOG0286343 consensus G-protein beta subunit [General function 95.91
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 95.88
KOG0299479 consensus U3 snoRNP-associated protein (contains W 95.87
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 95.86
PRK01029428 tolB translocation protein TolB; Provisional 95.86
KOG4283397 consensus Transcription-coupled repair protein CSA 95.85
KOG0270463 consensus WD40 repeat-containing protein [Function 95.84
KOG0647347 consensus mRNA export protein (contains WD40 repea 95.84
PRK00178430 tolB translocation protein TolB; Provisional 95.82
KOG0301745 consensus Phospholipase A2-activating protein (con 95.81
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 95.75
KOG0269839 consensus WD40 repeat-containing protein [Function 95.69
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 95.68
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 95.64
COG2319466 FOG: WD40 repeat [General function prediction only 95.59
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 95.54
PRK04792448 tolB translocation protein TolB; Provisional 95.52
KOG0282503 consensus mRNA splicing factor [Function unknown] 95.52
KOG0267825 consensus Microtubule severing protein katanin p80 95.51
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 95.48
KOG02921202 consensus Vesicle coat complex COPI, alpha subunit 95.42
KOG0641350 consensus WD40 repeat protein [General function pr 95.37
KOG1539910 consensus WD repeat protein [General function pred 95.36
KOG0290364 consensus Conserved WD40 repeat-containing protein 95.35
KOG15381081 consensus Uncharacterized conserved protein WDR10, 95.26
KOG0282503 consensus mRNA splicing factor [Function unknown] 95.24
KOG0639705 consensus Transducin-like enhancer of split protei 95.24
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 95.21
KOG4497447 consensus Uncharacterized conserved protein WDR8, 95.14
KOG4497447 consensus Uncharacterized conserved protein WDR8, 95.11
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 95.04
KOG0301745 consensus Phospholipase A2-activating protein (con 95.01
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 94.97
KOG0319775 consensus WD40-repeat-containing subunit of the 18 94.96
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 94.87
KOG4328498 consensus WD40 protein [Function unknown] 94.8
KOG12401431 consensus Protein kinase containing WD40 repeats [ 94.8
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 94.69
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 94.69
KOG0308735 consensus Conserved WD40 repeat-containing protein 94.63
KOG0270463 consensus WD40 repeat-containing protein [Function 94.59
PF10214765 Rrn6: RNA polymerase I-specific transcription-init 94.49
KOG2139445 consensus WD40 repeat protein [General function pr 94.48
KOG0294362 consensus WD40 repeat-containing protein [Function 94.43
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 94.38
KOG0316307 consensus Conserved WD40 repeat-containing protein 94.37
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 94.23
KOG2111346 consensus Uncharacterized conserved protein, conta 94.22
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 94.22
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 94.2
KOG0646476 consensus WD40 repeat protein [General function pr 94.19
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 94.16
KOG0313423 consensus Microtubule binding protein YTM1 (contai 94.11
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 94.03
PRK13616591 lipoprotein LpqB; Provisional 93.98
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 93.96
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 93.95
KOG14081080 consensus WD40 repeat protein [Function unknown] 93.85
PRK04043419 tolB translocation protein TolB; Provisional 93.81
PRK04043419 tolB translocation protein TolB; Provisional 93.68
KOG0316307 consensus Conserved WD40 repeat-containing protein 93.63
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 93.51
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 93.49
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 93.45
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 93.39
KOG4532344 consensus WD40-like repeat containing protein [Gen 93.37
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 93.22
KOG1963792 consensus WD40 repeat protein [General function pr 93.12
KOG4328498 consensus WD40 protein [Function unknown] 93.04
KOG1273405 consensus WD40 repeat protein [General function pr 93.02
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 93.0
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 92.99
KOG3621726 consensus WD40 repeat-containing protein [General 92.97
PF15390671 DUF4613: Domain of unknown function (DUF4613) 92.76
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 92.73
KOG2321703 consensus WD40 repeat protein [General function pr 92.72
KOG20411189 consensus WD40 repeat protein [General function pr 92.68
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 92.55
KOG2314698 consensus Translation initiation factor 3, subunit 92.47
COG4946668 Uncharacterized protein related to the periplasmic 92.41
KOG1963792 consensus WD40 repeat protein [General function pr 92.31
KOG2315566 consensus Predicted translation initiation factor 92.24
KOG4714319 consensus Nucleoporin [Nuclear structure] 92.23
KOG1188376 consensus WD40 repeat protein [General function pr 92.16
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 92.04
KOG1310758 consensus WD40 repeat protein [General function pr 92.03
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 91.94
KOG0295406 consensus WD40 repeat-containing protein [Function 91.61
KOG15171387 consensus Guanine nucleotide binding protein MIP1 91.57
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 91.08
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 90.81
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 90.59
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 90.54
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 90.34
KOG15171387 consensus Guanine nucleotide binding protein MIP1 90.33
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 90.3
KOG0771398 consensus Prolactin regulatory element-binding pro 90.15
KOG4283397 consensus Transcription-coupled repair protein CSA 89.92
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 89.57
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 89.45
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 89.14
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 88.48
smart0032040 WD40 WD40 repeats. Note that these repeats are per 88.15
COG4946668 Uncharacterized protein related to the periplasmic 87.93
KOG12401431 consensus Protein kinase containing WD40 repeats [ 87.84
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 87.62
KOG02921202 consensus Vesicle coat complex COPI, alpha subunit 87.38
KOG19161283 consensus Nuclear protein, contains WD40 repeats [ 87.24
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 87.02
PLN029191057 haloacid dehalogenase-like hydrolase family protei 87.0
KOG0290364 consensus Conserved WD40 repeat-containing protein 86.94
PLN029191057 haloacid dehalogenase-like hydrolase family protei 86.62
KOG0267825 consensus Microtubule severing protein katanin p80 86.05
COG0823425 TolB Periplasmic component of the Tol biopolymer t 85.96
KOG41901034 consensus Uncharacterized conserved protein [Funct 85.52
KOG4227609 consensus WD40 repeat protein [General function pr 84.35
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 84.15
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 84.11
COG0823425 TolB Periplasmic component of the Tol biopolymer t 84.06
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 83.92
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 83.68
KOG3881412 consensus Uncharacterized conserved protein [Funct 83.55
KOG4547541 consensus WD40 repeat-containing protein [General 83.24
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 83.11
PRK02888635 nitrous-oxide reductase; Validated 82.67
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 82.32
KOG0300481 consensus WD40 repeat-containing protein [Function 82.26
KOG20411189 consensus WD40 repeat protein [General function pr 82.06
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 81.97
KOG0303472 consensus Actin-binding protein Coronin, contains 81.13
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 80.46
KOG1310758 consensus WD40 repeat protein [General function pr 80.37
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-51  Score=493.48  Aligned_cols=382  Identities=18%  Similarity=0.205  Sum_probs=296.9

Q ss_pred             cccccceeecccceeeecCCccccccCCCC----CCCCCCCCCcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhc
Q 000733           11 EEIEGGRIESNDFFFDEIGESIPIIRDDDS----QFDLQNPPSLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEM   85 (1324)
Q Consensus        11 ~eVegEeI~TeDFgFK~Lgk~vslLRLfss----~~dLP~~~sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa   85 (1324)
                      ++++-++-+++||+|+.+++ +   |+|++    .+.+|...+|+|||+| +|||+||++..+ |.|+.|..|+-.....
T Consensus         6 ~d~~p~~~~s~df~f~~l~k-~---riF~Sfa~~~e~lp~~~sn~la~sn-~ysl~Fa~~nsk~L~vfgtknlLi~~it~   80 (1405)
T KOG3630|consen    6 KDEVPTETGSEDFGFKFLGK-K---RIFPSFAALNEKLPFASSNNLAISN-SYSLFFAASNSKSLAVFGTKNLLIDHITS   80 (1405)
T ss_pred             cccCCccccccchhheeccc-e---eeecccccccccCchhhhhhhhccc-ccceEEEecCCcceeeeccccceeecccc
Confidence            45566667799999999999 4   88887    5778888999999999 999999999888 8898888886544332


Q ss_pred             -ccCCcccccccc-eeeeecCCCCCeeEEEEecCCCEEEEEeec-CCeEEEEEcccccCC---CCcceeEEec--CCCcc
Q 000733           86 -KENGTRCCVQEL-SVVDVPFENENVDILSLSNDESTLAVSLYQ-SPHIHFFSVHSLLNK---EIKPSFSCSL--NGSTY  157 (1324)
Q Consensus        86 -~en~tv~~~~dl-~vi~VPLp~s~VshLAFSsDEs~LAVcaes-Gg~L~VYDV~SLlng---~t~P~~sisL--n~st~  157 (1324)
                       ..|.+++..+.+ ..|++.++   +.|++++||...++|..++ |-.|.+||++.|.+-   ...|++...+  +-...
T Consensus        81 D~~n~~Vd~~~~~t~~v~k~~p---i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf  157 (1405)
T KOG3630|consen   81 DSTNSLVDADENLTFKVEKEIP---IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVF  157 (1405)
T ss_pred             cccccccccccccceeeecccc---ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccc
Confidence             245444444332 12556666   8899999998877766654 779999999999875   4788888766  33467


Q ss_pred             eEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-----eecceeEEEeccCCCEEEEEecCc-eEEEccCccccccccc
Q 000733          158 VKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISL  231 (1324)
Q Consensus       158 VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~  231 (1324)
                      ..++.|||....++|+|+.|+.|.|+.++.....     +...++||||||||||+++|.+|| ++||+|.+++|++|||
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~  237 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE  237 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccC
Confidence            8899999999999999999999999988754322     346789999999999999999999 9999999999999999


Q ss_pred             CccccCCCCCCCCceeEEEEEEecCCeEEEEEEeec-CCCCcceeEEEEEecCCCCccCCCCCCeEEeecccccccccCC
Q 000733          232 SFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLT-EDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDI  310 (1324)
Q Consensus       232 Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vysa-eDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~D~~~~~~DDi  310 (1324)
                      |+.      ..  +++|.+|+||++.+|++.|...+ ++++++.|.+ .+.+.+   .+.     +.+|.+.|    |-.
T Consensus       238 Pp~------~e--~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~-~~~k~k---p~g-----~~nF~E~~----d~t  296 (1405)
T KOG3630|consen  238 PPV------EE--NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQ-KMYKIK---PDG-----SANFQETF----DIT  296 (1405)
T ss_pred             CCc------CC--CcceeEEEEecceeEEEEecccccCcCCchhhhh-cccccc---Ccc-----eeeecccc----CCC
Confidence            961      11  57999999999966665554332 2333333543 222211   121     88999998    333


Q ss_pred             CCCCCc---ceEEEeeecccc-----EEEEEecCcccceeEEe--eeccccCCCcceeeeccCCCccceeeCCCCCC-Cc
Q 000733          311 LPSGTG---PYLFLTYVERWG-----LAISANRKNIDDHVVLL--RWSLDDEKNDIAVVDINRDKWIPRIKLQDNGN-DN  379 (1324)
Q Consensus       311 ~PFGsg---P~~yl~~L~dWd-----LL~VASSaStDIgIL~~--~W~L~D~~~~~~vlEi~DDS~RAeLPLTED~D-DT  379 (1324)
                      .|||-.   ||||+.+|.+|+     |+||+|++|+||+||+.  +|...-          .+|..||+||+++..| ||
T Consensus       297 ppfg~~~rq~h~y~~~L~~W~~~~~~vVvvansaSsEvsila~~~qW~~w~----------~vde~ra~LP~s~k~d~Dt  366 (1405)
T KOG3630|consen  297 PPFGQIVRQPHMYKVTLSGWIEPDANVVVVANSASSEVSILASMKQWIEWS----------QVDEKRAVLPISEKTDKDT  366 (1405)
T ss_pred             CCccccCccchhHHHhhhhhcccccceEEEecccccchhhhhhhcceeecc----------ccccceeeecccccCCCCC
Confidence            458754   899999999998     99999999999999863  343221          2336899999998767 99


Q ss_pred             ceeEEEEEecCCCceeeecCCCCc-ccCCCceEEEEEcCCccEEEEEEEeccCCCC
Q 000733          380 LIMGLCIDKVSLCGKVKVQLGVEE-KELSPYFILMCLTLDGKLNMFHVASVSGPSC  434 (1324)
Q Consensus       380 ~PIGLALDLSSTe~kVevpIg~DE-~eLPPlPiL~VLTnEGvL~sw~VVnL~~~~~  434 (1324)
                      .|||+|+|++.++   ++.++.|. ..++|+|+||||||||+||++|+++......
T Consensus       367 ~PigVaVD~t~td---eIl~p~dg~~t~~PlPlV~~lnnDg~l~~~y~I~~aaa~s  419 (1405)
T KOG3630|consen  367 NPIGVAVDVTTTD---EILEPCDGVDTIEPLPLVYILNNDGSLQIVYLIHVAAAKS  419 (1405)
T ss_pred             CcceEEEEeeecc---eEecCCCcccccCCCceEEEEcCCCceeEEEEEeeccccc
Confidence            9999999999976   44445443 6799999999999999999999998876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1324
3fmo_A450 Crystal Structure Of The Nucleoporin Nup214 In Comp 8e-05
2oit_A434 Crystal Structure Of The N-Terminal Domain Of The H 2e-04
3fhc_A405 Crystal Structure Of Human Dbp5 In Complex With Nup 6e-04
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 450 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 84/443 (18%)
Query: 26  DEIGESIPIIRDDDSQFD-------LQNPPSLP------LAVSQLSHQLIFAAHSSGFCV 72
           DE+   IP     D QF          +P  LP      LAVS   + L+FA  +SG  +
Sbjct: 3   DEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQI 61
Query: 73  ARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH-- 130
             T +++   K   +      V ++  + VP +   +  L+LS D  TL+  +  S +  
Sbjct: 62  FPTKNLLIQNKPGDDPNK--IVDKVQGLLVPMKFP-IHHLALSCDNLTLSACMMSSEYGS 118
Query: 131 -IHFFSVHSLLN--KEIKPSFSCSL---NGSTYVKDIRWRKK-PENSFLALSNVGRLYRG 183
            I FF V +  N  K+ K  F+      +    V D++W    P    + L++ G +   
Sbjct: 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD-GSIAVL 177
Query: 184 GVNGPLEDVMD-----NVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKS 235
            V   ++          V +V WS KGK +AV K+N   V  + T + K+ +P    ++S
Sbjct: 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237
Query: 236 WVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGK---ITD 289
                  +  V+V  + W+     +        DG  E   + ++ ++  K+ K   I  
Sbjct: 238 -------DHPVRVLDVLWI--GTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFV 288
Query: 290 ASSEPXXXXXXXXXXXXXXXXXPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSL 349
              EP                       + +L+Y+E W L ++A+  + +  + L R S 
Sbjct: 289 NFMEPCYGSCTERQH-------------HYYLSYIEEWDLVLAASAASTEVSI-LARQS- 333
Query: 350 DDEKNDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEE 403
            D+        IN + W+        + + D  +D+L MG+ +D  +   +V++ +  +E
Sbjct: 334 -DQ--------INWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTN---QVEITIS-DE 380
Query: 404 KELSPYFILMCLTLDGKLNMFHV 426
           K L P  +LM L+ DG L  F++
Sbjct: 381 KTLPPAPVLMLLSTDGVLCPFYM 403
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Proto-Oncogene Nup214CAN Length = 434 Back     alignment and structure
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 405 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1324
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 5e-36
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 8e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 Back     alignment and structure
 Score =  141 bits (356), Expect = 5e-36
 Identities = 90/439 (20%), Positives = 169/439 (38%), Gaps = 49/439 (11%)

Query: 10  EEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSG 69
           E +      E  DF F  + +    +R  DS  +L    S  LAVS   + L+FA  +SG
Sbjct: 4   EMDAMIPEREMKDFQFRALKK----VRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASG 58

Query: 70  FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQS- 128
             +  T +++   K   +        +  +V + F    +  L+LS D  TL+  +  S 
Sbjct: 59  LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP---IHHLALSCDNLTLSACMMSSE 115

Query: 129 --PHIHFFSVHSLLNKEIKPSFSCSL-----NGSTYVKDIRWRKKPENSFLALSNVGRLY 181
               I FF V +  N+  +     +      +    V D++W     +        G + 
Sbjct: 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA 175

Query: 182 -----RGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKN-VLSILTSKLKERLPISLSFKS 235
                              V +V WS KGK +AV K+N  +      L+E+  I      
Sbjct: 176 VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFY 235

Query: 236 WVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPV 295
                     V+V  + W+      I         +    +V  +  K  +         
Sbjct: 236 ESDH-----PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE--------- 281

Query: 296 VLSFSDVFSDVIDDILPSGT--GPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEK 353
                ++F + ++    S T    + +L+Y+E W L ++A+  + +  V +L    D   
Sbjct: 282 --KHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE--VSILARQSDQIN 337

Query: 354 NDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILM 413
            +  +++   D     + + D  +D+L MG+ +D  +   +V++ +  +EK L P  +LM
Sbjct: 338 WESWLLE---DSSRAELPVTDKSDDSLPMGVVVDYTN---QVEITIS-DEKTLPPAPVLM 390

Query: 414 CLTLDGKLNMFHVASVSGP 432
            L+ DG L  F++ + +  
Sbjct: 391 LLSTDGVLCPFYMINQNPG 409
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Length = 388 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1324
d1xipa_381 b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast ( 8e-35
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (341), Expect = 8e-35
 Identities = 61/431 (14%), Positives = 136/431 (31%), Gaps = 66/431 (15%)

Query: 8   EIEEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHS 67
            +++E+      S DF F  +G    I+   +    L       L +S  S  L  AA  
Sbjct: 3   SLKDEVPT--ETSEDFGFKFLG-QKQILPSFNE--KLPFASLQNLDISN-SKSLFVAASG 56

Query: 68  SGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQ 127
           S   V     + D         T     E  +        +V  +    D+    V +  
Sbjct: 57  SKAVVGELQLLRDHITSDSTPLT--FKWEKEI-------PDVIFVCFHGDQ----VLVST 103

Query: 128 SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV-N 186
              ++   +  L       SF         V  ++      N+ + L++V  L    +  
Sbjct: 104 RNALYSLDLEELSEFRTVTSF------EKPVFQLKN---VNNTLVILNSVNDLSALDLRT 154

Query: 187 GPLEDVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSV 246
              + +  NV + + +     V +  ++  S      +       S  S + +       
Sbjct: 155 KSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL-EELPVEEY 213

Query: 247 KVDSIRWVRRDCIIIGCFQL---TEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVF 303
              S+  +     +     +   T+D    +  + +I+  DG  +   +  +   F  + 
Sbjct: 214 SPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDITPPFGQIV 273

Query: 304 SDVIDDILPSGTGPYLFLTYVERW-----GLAISANRKNIDDHVV---LLRWSLDDEKND 355
                        PY++   +         + + A+  + +  +     +     D +  
Sbjct: 274 RF-----------PYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSKQVIEPSQDSER- 321

Query: 356 IAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCL 415
            AV+ I+          ++   D   +G+ +D V+    ++   GV+  E  P  ++  L
Sbjct: 322 -AVLPIS----------EETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLP--LVYIL 368

Query: 416 TLDGKLNMFHV 426
             +G L +  +
Sbjct: 369 NNEGSLQIVGL 379

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1324
d1xipa_381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.18
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.12
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.05
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.05
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.96
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.89
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.88
d1tbga_340 beta1-subunit of the signal-transducing G protein 98.87
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 98.84
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 98.71
d1tbga_340 beta1-subunit of the signal-transducing G protein 98.7
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 98.68
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 98.67
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.66
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 98.63
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 98.61
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 98.47
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 98.46
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 98.45
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 98.45
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 98.31
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 98.31
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 98.21
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 98.1
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 98.05
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 98.02
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 97.93
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.88
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 97.85
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.8
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 97.78
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.75
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 97.69
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 97.64
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 97.59
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 97.5
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 97.47
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 97.34
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 97.33
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 97.32
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 97.15
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 97.07
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 96.76
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.78
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 95.48
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 95.37
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 95.17
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 93.96
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 93.8
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 93.23
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 92.71
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 92.15
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 91.81
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 87.89
d1xipa_381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 85.55
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 81.57
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 81.27
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 80.07
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=487.35  Aligned_cols=356  Identities=15%  Similarity=0.120  Sum_probs=272.5

Q ss_pred             CCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHHCCC
Q ss_conf             44411135512115621220288656224899978899999865575378502999981881599970578989730145
Q 000733            8 EIEEEIEGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKE   87 (1324)
Q Consensus         8 ~~~~eVegEeIeTeDFgFK~Lgk~vsiLRLfss~~dLP~~~sSLLAVSN~K~GLvfAAgpsGLvV~rTsDLr~a~ksade   87 (1324)
                      |+.||++  +++|+|||||++++ ..+++  ++++.||.+++||||||| +|||+|||++++++|++|++||++.+...+
T Consensus         3 ~~~~e~p--~~~tedfgFk~l~~-~~~~~--~~~d~lP~~~~~LLAVsn-~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~   76 (381)
T d1xipa_           3 SLKDEVP--TETSEDFGFKFLGQ-KQILP--SFNEKLPFASLQNLDISN-SKSLFVAASGSKAVVGELQLLRDHITSDST   76 (381)
T ss_dssp             EECCCCC--EEEESSCEEEEEEE-EECSC--CCTTCCCSSCCBCEEEET-TTTEEEEEETTEEEEEEHHHHHHHHHSSSC
T ss_pred             CCCCCCC--CEECCCCEEEECCC-CCCCC--CCCCCCCCCCCCEEEEEC-CCCEEEEECCCEEEEEEHHHHHHHHHCCCC
T ss_conf             5466678--16646530587166-21278--954458964442689957-778899988997799998997878655678


Q ss_pred             CCCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCC
Q ss_conf             87423346412443128988814999953998899994259829999723102799721068822898315887756999
Q 000733           88 NGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP  167 (1324)
Q Consensus        88 n~tv~~v~dl~li~VPLp~s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~  167 (1324)
                      .  ..+.+     ..+++  +|+||||++|+  |++..  ++.+++|++.++.++...+..      ...++++.|||  
T Consensus        77 ~--~~~~~-----~~~ip--~v~~vafs~d~--l~v~~--~~~l~~~~~~~l~~~~~~~~~------~~~~~~~~~~p--  135 (381)
T d1xipa_          77 P--LTFKW-----EKEIP--DVIFVCFHGDQ--VLVST--RNALYSLDLEELSEFRTVTSF------EKPVFQLKNVN--  135 (381)
T ss_dssp             C--CCCSE-----EEECT--TEEEEEEETTE--EEEEE--SSEEEEEESSSTTCEEEEEEC------SSCEEEEEECS--
T ss_pred             C--CCCEE-----CCCCC--CEEEEEEECCE--EEEEE--CCCEEEEEEECCCCCCCCCCC------CCCCCCEECCC--
T ss_conf             8--86234-----16899--86899861898--99995--897899985100145446554------55611102188--


Q ss_pred             CCEEEEEEECCEEEEEEECCCC-EEE---------ECCEEEEEECCCCCEEEEEECCC-EEEECCCCCCCCCCCCCCCCC
Q ss_conf             9949999808809999808995-144---------14434898542797799993396-599804764332112586555
Q 000733          168 ENSFLALSNVGRLYRGGVNGPL-EDV---------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSW  236 (1324)
Q Consensus       168 sslLAVVSsDGsL~Vldl~e~l-k~I---------asgVTSVaWSPKGKQLVVGl~DG-IsQyTPDleeKkvIP~Pf~S~  236 (1324)
                       +++++|..+|.+.++.+.+.. ..+         ..+++|+|||+||||+++|  +| ..|+++++.....+++|+   
T Consensus       136 -~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~--~g~~~q~k~~i~~~~~~~~p~---  209 (381)
T d1xipa_         136 -NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW--RNGEMEKQFEFSLPSELEELP---  209 (381)
T ss_dssp             -SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE--ETTEEEEEEEECCCHHHHTSC---
T ss_pred             -CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEE--CCCCEEECCCCCCCCCCCCCC---
T ss_conf             -60699965897789994158644444775238733892699996896899981--898203656778820157886---


Q ss_pred             CCCCCCCCCEEEEEEEEECCCEEEEEEEEEC---CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             7877899843588988834874999997426---9999630699998538987568899972774024434533588998
Q 000733          237 VGDCDVNCSVKVDSIRWVRRDCIIIGCFQLT---EDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPS  313 (1324)
Q Consensus       237 IgD~d~d~sv~V~SI~WLeNdsfLFa~v~st---eDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~Di~~~~~DDi~PF  313 (1324)
                            +..++|++|.||+|+.|+++|....   +|+..+.+.+++++.++       ++++|++|+|+|       +||
T Consensus       210 ------~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~~~~~~~~~ii~~~~-------~~~~f~~~~Di~-------~pf  269 (381)
T d1xipa_         210 ------VEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHID-------GSASFQETFDIT-------PPF  269 (381)
T ss_dssp             ------TTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEET-------TEEEEEEESSSC-------CCC
T ss_pred             ------CCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCC-------CCCCEECCCCCC-------CCC
T ss_conf             ------778616689995175699998777666676776433799982699-------983035256566-------776


Q ss_pred             CCC---CEEEEEEECCC-----CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCC-CCCCCEEEE
Q ss_conf             886---52788430461-----199997067642146774302666777621662158876613307899-998401499
Q 000733          314 GTG---PYLFLTYVERW-----GLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDN-GNDNLIMGL  384 (1324)
Q Consensus       314 Gsg---P~~yla~L~dW-----dLLIVASSaSTDIgIL~~~W~l~D~~~~~~vlEi~DDS~RAeLPLTED-~DDTsPIGL  384 (1324)
                      |++   |+||+.+|++|     +|+|++|++|+||+|++..          .+++++||++||+|||+++ ++||+||||
T Consensus       270 gs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~~~----------~~~~~~~D~~Ra~lP~~~~~d~Dt~piGl  339 (381)
T d1xipa_         270 GQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK----------QVIEPSQDSERAVLPISEETDKDTNPIGV  339 (381)
T ss_dssp             CCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS----------SEEEESSGGGCCBCCBCTTTCCBCCEEEE
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECC----------CCEEEECCCCCEEECCCCCCCCCCCCEEE
T ss_conf             56666751799983005656786899955676345686136----------74898126753040357788876531589


Q ss_pred             EEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf             99713788622111788744579732999983885298999984
Q 000733          385 CIDKVSLCGKVKVQLGVEEKELSPYFILMCLTLDGKLNMFHVAS  428 (1324)
Q Consensus       385 ALDLSSte~kVevpIg~DE~eLPPlPiLlVLTsEGvL~sw~VVn  428 (1324)
                      |||+|+++...+++.+.|  +++|+|+||||||||+|++|||+|
T Consensus       340 alD~ss~~~v~~p~~g~~--~~~plP~l~vL~~~G~L~~ww~~~  381 (381)
T d1xipa_         340 AVDVVTSGTILEPCSGVD--TIERLPLVYILNNEGSLQIVGLFH  381 (381)
T ss_dssp             EEECSCCC----------------CCEEEEEETTSEEEEEEEEC
T ss_pred             EEECCCCCEEECCCCCCC--CCCCCCEEEEECCCCEEEEEEEEC
T ss_conf             997124752315788822--278998899996987899999879
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure