Citrus Sinensis ID: 000818
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1268 | 2.2.26 [Sep-21-2011] | |||||||
| P09122 | 563 | DNA polymerase III subuni | yes | no | 0.227 | 0.513 | 0.345 | 7e-46 | |
| Q89A95 | 370 | DNA polymerase III subuni | yes | no | 0.226 | 0.775 | 0.331 | 8e-43 | |
| P74876 | 642 | DNA polymerase III subuni | yes | no | 0.225 | 0.445 | 0.335 | 9e-43 | |
| P75177 | 681 | DNA polymerase III subuni | yes | no | 0.310 | 0.578 | 0.282 | 2e-42 | |
| P06710 | 643 | DNA polymerase III subuni | N/A | no | 0.225 | 0.444 | 0.332 | 3e-42 | |
| P47658 | 597 | DNA polymerase III subuni | yes | no | 0.227 | 0.482 | 0.332 | 6e-42 | |
| Q8K983 | 363 | DNA polymerase III subuni | yes | no | 0.207 | 0.724 | 0.334 | 5e-40 | |
| P43746 | 688 | DNA polymerase III subuni | yes | no | 0.194 | 0.359 | 0.34 | 5e-39 | |
| P57553 | 361 | DNA polymerase III subuni | yes | no | 0.216 | 0.761 | 0.323 | 8e-39 | |
| P63975 | 578 | DNA polymerase III subuni | yes | no | 0.226 | 0.496 | 0.332 | 8e-35 |
| >sp|P09122|DPO3X_BACSU DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3 | Back alignment and function desciption |
|---|
Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 165/292 (56%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV R+ KI E L VE +L++IA ADG +RDA ++LDQ +S G + +
Sbjct: 182 AIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ + +L + + ++ ++ EL+ G DP L+ + D++
Sbjct: 242 GAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDML 293
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 96/290 (33%), Positives = 171/290 (58%), Gaps = 3/290 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L++K++P F+++IGQ +V ++ N++ GRI +LF G RGTGKT+ A+I + +
Sbjct: 2 NYHILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC PC C C + G + EVD ++ ++ ++ +L ++ LPS R
Sbjct: 62 LNCKLGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRY-LPSKG-R 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FK+++IDE H+L ++ LK +EEPPQ + FI TT+++ +P +I SRC ++ I
Sbjct: 120 FKIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPIN 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+IVA + I +EN+ E AL LI+ ++GSLRDA T+ +Q+ +GK IT +V +
Sbjct: 180 LNEIVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRK 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+G++ E+++L +L ++ D V + + D+ ++ ++ ++ L+
Sbjct: 240 TLGMLYEDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLL 289
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaX PE=3 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 162/289 (56%), Gaps = 3/289 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+L I EE++ EP AL L++ ADGSLRDA ++ DQ G ++++ V+ ++G
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ +++ L L+E + ++ + E G++ L+ ++ SL+ I
Sbjct: 244 LDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRI 292
|
Isoform gamma: chain seems to interact with the delta subunit to transfer the beta subunit on the DNA. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/436 (28%), Positives = 215/436 (49%), Gaps = 42/436 (9%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L QKY+P F + +GQ+ + + +VN I++ ++ Y+F G RGTGKT+ AKI + A+N
Sbjct: 3 KVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAIN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + C C C S + + E+D +K G++ +R + +++ LP + K
Sbjct: 63 CLNWNGDV-CNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENV-FNLPFKFKK-K 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L ++W LK LEE P V+FIF TT+ + +P +I SRCQ + F +I +
Sbjct: 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITND 179
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL--VNEL 696
I RL +++A+E++ + DAL +A A GSLRD ++LDQ+S + T SL V +
Sbjct: 180 LIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKT 239
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
++ +E+ +E +S D ++ G++ + + +L +L +D+ G G
Sbjct: 240 FNLLDKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDLY-GYVKTG 298
Query: 757 GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM-------------- 802
++ + + + L+ + L + E T + + L L
Sbjct: 299 QIAVVKPSDQTMAAKLRFHPKQYALLVQAIEANTGYGPSQLSLSDQIKAIVIHYNNAVSK 358
Query: 803 --HSPDL-----TQSGSSRRQSSRTTEE-DPSSTSREAVVYKRMSGPQY----------- 843
H P TQS + S+T EE P ++E V+YK + P+
Sbjct: 359 EPHIPAYTPVVQTQSPAKEHVPSKTVEEAKPQLPAKEPVLYKVIEEPKVSSFVKDPVASK 418
Query: 844 ---MPQNAVSPASLRE 856
PQ V P + +E
Sbjct: 419 LIEQPQTIVQPEAQQE 434
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P06710|DPO3X_ECOLI DNA polymerase III subunit tau OS=Escherichia coli (strain K12) GN=dnaX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 162/289 (56%), Gaps = 3/289 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+L I EE++ EP AL L+A A+GSLRDA ++ DQ G ++++ V+ ++G
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ +++ L L+E + ++ + E G++ L+ ++ L+ I
Sbjct: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292
|
Isoform gamma: seems to interact with the delta subunit. to transfer the beta subunit on the DNA. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P47658|DPO3X_MYCGE DNA polymerase III subunit gamma/tau OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=dnaX PE=3 SV=3 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 4/292 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
QKY+PI F + +GQ + + LVN I+R ++ Y+F G RGTGKT+ AKI + A+NC+
Sbjct: 5 FYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINCL 64
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
DQ C C C + + + +E+D +K G++ +R +++++ P + KV+
Sbjct: 65 NWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNH-PFTFKK-KVY 122
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L +++W LK LEE P V+FIF TT+ + +P +I SRCQ + F KI I
Sbjct: 123 ILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDLI 182
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELVG 698
+ RL I+ +E + +E DAL IA + GSLRD ++LDQ+S ++I+ + V +
Sbjct: 183 LERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTFN 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
+V ++ +S D E + +G++ + +L +L +++ A
Sbjct: 243 IVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYA 294
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|Q8K983|DPO3X_BUCAP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 3/266 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++K++P F ++IGQ +V+++ N S G+I +L G RG GKT+ A++ + +
Sbjct: 2 NYQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + PC C C + G +F+E+D ++ ++ +R IL ++ PS S R
Sbjct: 62 LNCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYY-TPSKS-R 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L ++ A LK LEEPPQ + FI TTD++ +P++I+SRC + N +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+ DI L+ I + N + +AL +I+ A+GS+RDA +L+ L K I E
Sbjct: 180 EEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTE 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETV 721
++G+ +++ L + + D+ + +
Sbjct: 240 MLGIPNKKHAFLLTKFLLEQDSKKMM 265
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P43746|DPO3X_HAEIN DNA polymerase III subunit tau/gamma OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 144/250 (57%), Gaps = 3/250 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ ++ +L N + R+ YLF G RG GKTS A++F+ LNCV
Sbjct: 6 LARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C G + +E+D ++ ++ R +L ++ P RFKV+
Sbjct: 66 HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYK-PVVG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVGV 699
L I +EN+ E AL +A A GS+RD+ ++ DQ +G R +T+++V+ ++G+
Sbjct: 184 SQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGL 243
Query: 700 VSEEKLLELL 709
+ + +++L
Sbjct: 244 LDDNYSVDIL 253
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P57553|DPO3X_BUCAI DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 157/278 (56%), Gaps = 3/278 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++K++P +F ++IGQ +V ++ N +S GRI +L G RG GKT+ A++ + +
Sbjct: 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + PC C C + G + +E+DG ++ ++ +R IL S R
Sbjct: 62 LNCQNGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILD--SIYYSPIKSR 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L ++ A LK LEEPP+ V F+ TTD+D +P++I SRC + I
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+ I L+ I +E+++ + +L IA +A GS+RDA +L+ LG + V +
Sbjct: 180 EEKIFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
++G++ E+ L + + D+ +T+ ++ GV+
Sbjct: 240 MLGLLPEKYSFLLTDAVLKKDSKKTMLLLNKISSIGVE 277
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P63975|DPO3X_MYCTU DNA polymerase III subunit gamma/tau OS=Mycobacterium tuberculosis GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 8/295 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F E++GQ V L + GRI YLF GPRG GKTS+A+I + +LNC
Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGK--SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
PCG C C S + +E+D + G+D R L+ + P S R+
Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPVQS-RY 119
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++DE H++ + + A LK +EEPP+ ++FIF TT+ + V +I+SR Y F +
Sbjct: 120 RVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP 179
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
+ A L +I +E + V+ L+ GS RD ++LDQL L G T +
Sbjct: 180 RTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRAL 238
Query: 698 GV--VSEEKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDII 749
G+ V++ L++ A+++ A + A E ++D G DP + L D+I
Sbjct: 239 GLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLI 293
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1268 | ||||||
| 255556667 | 1270 | replication factor C / DNA polymerase II | 0.963 | 0.962 | 0.691 | 0.0 | |
| 359486198 | 1274 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.952 | 0.640 | 0.0 | |
| 395399800 | 1223 | trichome branching-like protein [Gossypi | 0.940 | 0.975 | 0.665 | 0.0 | |
| 224070732 | 1241 | predicted protein [Populus trichocarpa] | 0.945 | 0.966 | 0.659 | 0.0 | |
| 449431904 | 1267 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.970 | 0.639 | 0.0 | |
| 356520145 | 1237 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.966 | 0.632 | 0.0 | |
| 356564432 | 1236 | PREDICTED: uncharacterized protein LOC10 | 0.944 | 0.968 | 0.632 | 0.0 | |
| 224129822 | 1197 | predicted protein [Populus trichocarpa] | 0.914 | 0.968 | 0.640 | 0.0 | |
| 297814494 | 1222 | hypothetical protein ARALYDRAFT_484163 [ | 0.934 | 0.969 | 0.588 | 0.0 | |
| 18395372 | 1218 | AAA-type ATPase-like protein [Arabidopsi | 0.928 | 0.966 | 0.588 | 0.0 |
| >gi|255556667|ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223541434|gb|EEF42984.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1607 bits (4160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 892/1290 (69%), Positives = 1026/1290 (79%), Gaps = 68/1290 (5%)
Query: 17 IRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA--WKINNNNKQLVDEDNNVS 73
+ KAAR LRDPGTTSSWKSP+SSSRS AAA AA+A+ S WK +N + + N+ S
Sbjct: 11 VGKAARVLRDPGTTSSWKSPISSSRSAAAATLAAAAAASTSAWKQFDNENVIPNGHNSNS 70
Query: 74 INNGNV--NGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIESVDDS 131
+ NGKEKRVFL NWK QKSSSE SA+ARND D ED S SV +SVDDS
Sbjct: 71 HMDSYFRNNGKEKRVFLYNWKTQKSSSEKSAIARNDLD-------EDYESRSVQDSVDDS 123
Query: 132 LSDARNGGDSKSDTYLGENRASS-IFRCRDANLVSVATPAMKRAMAAKRKSKRHKTLSDS 190
LSDARN DSKSDTYLG++R+SS IFRCRDANLVS P+M+RAM K+KSK+ T D
Sbjct: 124 LSDARNAADSKSDTYLGDSRSSSMIFRCRDANLVS---PSMRRAMGIKKKSKKTDTHLDI 180
Query: 191 LTRYQQKQIILAR-----NSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASPLLLKLK 245
L+RYQQK+I L R S ALGLGR++SVEQSDDTEDY NSED RK SGASPLL+KLK
Sbjct: 181 LSRYQQKEINLRRLLKSHPSIALGLGREDSVEQSDDTEDYSNSEDLRKISGASPLLIKLK 240
Query: 246 HKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTASLNDNDD 305
HK WSHS SKLL+ RKEDSSY+YSTPALSTSSYNRY N NPST+GSWD TTAS+ND DD
Sbjct: 241 HKRWSHSPSKLLRISRKEDSSYTYSTPALSTSSYNRYCNHNPSTVGSWDGTTASVNDGDD 300
Query: 306 AMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHG 365
+DDHLDLPGRQGCGIPCYWSKRTP+HRGVCGSCCSPSLSDT++RKG+S+LCG Q+MYH
Sbjct: 301 EVDDHLDLPGRQGCGIPCYWSKRTPRHRGVCGSCCSPSLSDTIQRKGTSMLCGRQSMYHR 360
Query: 366 RRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSR 425
R SSSV NKRR++SRSAQG+LPLLAN+ DGR GSSIGTG SDDELSTNFGELDLEALSR
Sbjct: 361 RWHSSSVYNKRRISSRSAQGLLPLLANS-DGRGGSSIGTGNSDDELSTNFGELDLEALSR 419
Query: 426 LDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLV 484
LDGRRWSS CRSQDGLEIVALNG+ EEEG ENIRSLSQKYKP+FF E+IGQNIVVQSL+
Sbjct: 420 LDGRRWSS-CRSQDGLEIVALNGDGEEEGTPENIRSLSQKYKPLFFGEVIGQNIVVQSLI 478
Query: 485 NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544
N ISRGRIAPVYLFQGPRGTGKTSTA+IF++ALNC++T++TKPCGYCR+C+DFISGK+R+
Sbjct: 479 NAISRGRIAPVYLFQGPRGTGKTSTARIFASALNCISTEETKPCGYCRDCSDFISGKARD 538
Query: 545 FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
EVDGTNKKG+D+VR++LK +S P+ S R+KVF+IDECHLLPSK WLAFLKFLEEPP
Sbjct: 539 LWEVDGTNKKGIDKVRHLLKKVSQWPPTGSSRYKVFLIDECHLLPSKMWLAFLKFLEEPP 598
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
QRVVFIFITTD DNVPR++QSRCQKYLFNKIKDGDIVARLRK+S+EENL+VE DALDLIA
Sbjct: 599 QRVVFIFITTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKVSSEENLDVELDALDLIA 658
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA 724
LNADGSLRDAETMLDQLSLLGKRIT+SLVNELVGVV +EKLLELLEL+MSSDTAETVKRA
Sbjct: 659 LNADGSLRDAETMLDQLSLLGKRITTSLVNELVGVVPDEKLLELLELSMSSDTAETVKRA 718
Query: 725 RELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAELERLKHALKL 774
R+L+ SGVDP+VLMSQLASLIMDIIAGT+ + GGRSLTEAELERLKHALKL
Sbjct: 719 RDLLHSGVDPLVLMSQLASLIMDIIAGTHNVADAKYSISLFGGRSLTEAELERLKHALKL 778
Query: 775 LSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVV 834
LSEAEKQLR+SS+R TWFTATLLQLGS+ SPDLTQS SSRRQSSRTTEEDPSS SRE V
Sbjct: 779 LSEAEKQLRVSSDRSTWFTATLLQLGSVPSPDLTQSSSSRRQSSRTTEEDPSSASREVTV 838
Query: 835 YKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAV 894
YK+ S QY+ + + SPASL + +NG S H GE G NS +PSHS D+ +
Sbjct: 839 YKQKSDAQYLSRRSSSPASLYKAINGKSSHRGEF-----GFNSKLRPSHS--IDSCMSSA 891
Query: 895 SQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYV 954
S++ +V + + RN+EKL IW +CI CHS TL+QLL HGKL S+SEVE L+ YV
Sbjct: 892 SRDDELVESMPLRYRNAEKLDRIWEKCIANCHSNTLRQLLHTHGKLFSLSEVEGALVVYV 951
Query: 955 AFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNELPKGLKKTE 1014
AFGD DIK+RAERF+SSITNSIE VLR NVEVRII +PDGE S++ +EL + K+ E
Sbjct: 952 AFGDEDIKARAERFMSSITNSIEMVLRCNVEVRIIFVPDGEDSMNCVNQSEL-QIQKQVE 1010
Query: 1015 TTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFK-GEDDH----- 1068
T AIE+E KA C N + YSD+ + +RK+SRGSFN+L+ K K G D+
Sbjct: 1011 ATMAIEQEKKANCVNPVNGYSDAQQE------SRKLSRGSFNDLDSKLKGGSGDYLKSLT 1064
Query: 1069 ---------SNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAP 1119
S + L + N+E K QE+PMQRIESIIREQRLETAWLQA EKG P
Sbjct: 1065 LLDSSFQSTSLSAELLPEANTESDGVKETGQELPMQRIESIIREQRLETAWLQAAEKGTP 1124
Query: 1120 GSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVLKKD 1179
GSL L+PEKNQVLPQED +QN MES S LSSQ WE ELN ELK+LK+ E RVL KD
Sbjct: 1125 GSLSRLKPEKNQVLPQEDC-QQNQMESASSMALSSQHWEHELNDELKVLKMEERRVLHKD 1183
Query: 1180 ENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGKVKG 1239
+ GK+ ++YPI PSLLH S+F+GN +KE+ GYES S GGCSGLFCWN K H KV G
Sbjct: 1184 QIGKRADHYPISPSLLHGSNFVGNLNKESLGYESSSAGGGCSGLFCWNANKSH---KVNG 1240
Query: 1240 TPVRSR-KGGHFSLFVDCTKAKKSESRLRR 1268
TPVR R KGG FSLF +C K KK+E+R++R
Sbjct: 1241 TPVRYRGKGGRFSLFGECGKHKKTENRIKR 1270
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486198|ref|XP_002268959.2| PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1535 bits (3975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1304 (64%), Positives = 990/1304 (75%), Gaps = 90/1304 (6%)
Query: 11 KKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVDED 69
KK+LTQIRKAAR LRDPGTTSSW+SPLS++RSL+ + A ++
Sbjct: 13 KKQLTQIRKAARVLRDPGTTSSWRSPLSTARSLSLSAATPPPPQPPPPPPRPPEE----- 67
Query: 70 NNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIESVD 129
+RVFL NW++ +++S N+DD+ VD GSS VD
Sbjct: 68 -------------SRRVFLYNWRSASQKAKSSVNGENEDDEDGVD-----GSS-----VD 104
Query: 130 DSLSDARNGGDSKSDTYLGENR-----ASSIFRCRDANLVSVATPAMKRAMAAKRKSKRH 184
DSLSD RNG DSKSDTY+G R AS IFRCRDANLV AM R K+K
Sbjct: 105 DSLSDWRNGVDSKSDTYIGGRRHRRHHASMIFRCRDANLV-----AMGRPSGIKKKKGSK 159
Query: 185 KTLSDSLTRYQQKQIILARNSAALG---------LGRDESVEQSDDTEDYCNSEDFRKYS 235
S +L R+QQ+Q L N+A G LGRD+SVEQSDDTE+Y NSEDFR+
Sbjct: 160 NVHSIALLRHQQQQQQL--NTARSGNSKRLLEGILGRDDSVEQSDDTEEYYNSEDFRRIC 217
Query: 236 GASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDA 295
ASPLL +L+ +NWS SSS+LL+ RK+DSSYSYSTPALSTSSYN Y NRNPST+ SWD
Sbjct: 218 EASPLLSRLRQRNWSRSSSRLLRSKRKDDSSYSYSTPALSTSSYNPYGNRNPSTVESWDG 277
Query: 296 TTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKR-TPKHRGVCGS--CCSPSLSDTLRRKG 352
TTASL+D DD +DD LDLPGRQGCGIPCYWS+R TP+HRG+CGS C SPSLSDT+RRKG
Sbjct: 278 TTASLHDGDDEVDDQLDLPGRQGCGIPCYWSRRSTPRHRGICGSGSCDSPSLSDTIRRKG 337
Query: 353 SSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
SS+LCGSQT+Y R S KRR S + QG+LPLL N+ DG GSS+GTGRSDDELS
Sbjct: 338 SSMLCGSQTIYPRRHGLPLGSKKRRSVSMTPQGLLPLLTNSCDGHGGSSMGTGRSDDELS 397
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQKYKPIFFD 471
TNFGELDLEALSRLDGRRWSSSCRSQ+ +E+VALNGE EEEG EN+RSLSQKY+P+FFD
Sbjct: 398 TNFGELDLEALSRLDGRRWSSSCRSQEAMELVALNGEREEEGSPENVRSLSQKYRPMFFD 457
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
ELIGQNIVVQSLVN ISRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC+A +TKPCG C
Sbjct: 458 ELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCLAVGETKPCGIC 517
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
REC+DFISGKSR+F E+DGTNKKG+DR+RY+LK + G PS +KVFVIDECHLLPSK
Sbjct: 518 RECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKVFVIDECHLLPSK 577
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
TWLAFLKFLEEPP +VVFIFIT D++NVPR++ SRCQKYLFNKIK+GDIVARLRKIS +E
Sbjct: 578 TWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDE 637
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+VE DAL+LIALNADGSLRDAETMLDQLSLLGKRIT+SLVN+LVGVVS+EKLLELLEL
Sbjct: 638 NLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGVVSDEKLLELLEL 697
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLT 761
AMSSDTAETVKRARELMDSGVDP+VLMSQLASLIMDIIAGTY I GGRSLT
Sbjct: 698 AMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQQSDSFFGGRSLT 757
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
EAE++RLKHALKLLSEAEKQLR+SSER TWFTATLLQLGS SPD T SGSSRRQSS+TT
Sbjct: 758 EAEMDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGS-PSPDPTLSGSSRRQSSKTT 816
Query: 822 EEDPSSTSREA-VVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSK 880
E+DPSS SR+A +V+K+ +MP+ + SP S+ + NS H G++LS +DG N +K
Sbjct: 817 EDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLLSLVDGFNFNAK 876
Query: 881 PSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKL 940
P HS+ +++GA A S + ++GN + N++KL +IW +CIERCHSKTL+QLL HGKL
Sbjct: 877 PVHSQFRNSGASASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKL 936
Query: 941 LSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHH 1000
+SISE E L+AYVAF D DIK RAERFLSSITNSIE V+R NVEV+IILLPDGE S++
Sbjct: 937 VSISEAEGGLVAYVAFQDEDIKCRAERFLSSITNSIEIVMRSNVEVKIILLPDGEISMNM 996
Query: 1001 ---GISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNE 1057
G+ + L GLK+ ETTAA+E E KA D+ DS Q++ KVSRGSFN+
Sbjct: 997 KAVGLPDTL--GLKQRETTAAVEGERKAFSMKGIDSDLDSSHQEL-----LKVSRGSFND 1049
Query: 1058 LEGKFK-GEDDHSNCSPL----------FADGNSEISSTKGRRQEIPMQRIESIIREQRL 1106
EGK + G D SNCSPL A+G+ E SSTK R QEIPM RI+SIIREQRL
Sbjct: 1050 SEGKLRGGSRDPSNCSPLLDRTFGPTDELAEGHIERSSTKERNQEIPMHRIDSIIREQRL 1109
Query: 1107 ETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELK 1166
ETAWLQ EKG P S+ L+PEKNQ+LPQ+ YRQN +ES+ S G+ SQ+WEDELN E+K
Sbjct: 1110 ETAWLQVAEKGTPRSMSRLKPEKNQILPQDGTYRQNQVESMNSVGVPSQKWEDELNHEIK 1169
Query: 1167 ILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCW 1226
+LK+N+ R L+KD GK+ ++YPI PS LHDSSF+ NF+KE+ GYESG+ + GC+ FCW
Sbjct: 1170 VLKINDRRALQKDPVGKRVDHYPISPSSLHDSSFVANFNKESMGYESGTGSVGCNSFFCW 1229
Query: 1227 NNTKPHKKGKVKG-TPVRSRK--GGHFSLFVDCTKAKKSESRLR 1267
NN KP K+GK+K P+ S K G F F +C K++K++SR +
Sbjct: 1230 NNDKPPKRGKIKQRPPLPSPKVGRGRFPCFGECGKSRKTDSRFK 1273
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395399800|gb|AFN58239.1| trichome branching-like protein [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
Score = 1535 bits (3973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 864/1298 (66%), Positives = 1002/1298 (77%), Gaps = 105/1298 (8%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
M+++R RL LKKELTQIRKAAR LRDPGTTSSWKSP++SSRS+AA + + S S S
Sbjct: 1 MSDLRMPDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSPINSSRSVAA-LGSESLSRS- 58
Query: 56 WKINNNNKQL--------VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARND 107
N N L V+ + + I N N N K+KRVFL NW++QKSSS D
Sbjct: 59 ----NGNAHLDLSLLPFRVESNGHGRITNSNGNEKDKRVFLYNWRSQKSSSVNVDDDGED 114
Query: 108 DDDIDVDDDEDEGSSSVIESVDD-SLSDARNGGDSKSDTYLGENR-ASSIFRCRDANLVS 165
DDD D DD D+ SS + SVD+ SLSDAR GDSKSDT LGE+R AS +FRCRDANLVS
Sbjct: 115 DDDFDDGDDGDQSSSWIQGSVDENSLSDARKCGDSKSDTCLGESRSASMLFRCRDANLVS 174
Query: 166 VATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDY 225
+ TP+ KR + A + SK++ + D +RY+QK+ G+ R+ SV+QSDDTEDY
Sbjct: 175 LVTPSAKRMLGANKNSKKNGSNFDVFSRYEQKKN---------GVNRNSSVDQSDDTEDY 225
Query: 226 CNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNR 285
NSEDFRK SGASPLLLKLK KNW H SS+LLK RKEDSSYSYSTPALSTSSYN+Y N
Sbjct: 226 SNSEDFRKISGASPLLLKLKPKNWPHPSSRLLKADRKEDSSYSYSTPALSTSSYNKYFNH 285
Query: 286 NPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLS 345
NPS +GSWDATT SLND DD +DD LDLPG+QGCGIPCYW+KRTPKHR VCGSC SPSLS
Sbjct: 286 NPSVVGSWDATTTSLNDGDDDVDDPLDLPGQQGCGIPCYWTKRTPKHRVVCGSCYSPSLS 345
Query: 346 DTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTG 405
DTLRRKGSSILCGSQ+MYH RRS S+SNKR+ A RSAQGVLPLL+N+ DGR GSSIGT
Sbjct: 346 DTLRRKGSSILCGSQSMYHRHRRSLSLSNKRKNALRSAQGVLPLLSNSADGRGGSSIGTR 405
Query: 406 RSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQK 464
SDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVA GE EEEG ENI+SLSQK
Sbjct: 406 CSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVAHTGEAEEEGTPENIKSLSQK 465
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
YKP+FFDELIGQNIVVQSL+N +S+GRIAP YLFQGPRGTGKTSTA+IFSAALNC TD
Sbjct: 466 YKPMFFDELIGQNIVVQSLMNAVSKGRIAPFYLFQGPRGTGKTSTARIFSAALNCQTTDD 525
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDE 584
KPCG C EC +F SGK R F E D TN++G+DRVRY+LK LS GL S+S R+KVFVIDE
Sbjct: 526 DKPCGCCTECTEFTSGKRREFWEFDSTNRRGIDRVRYLLKSLSTGLASSSSRYKVFVIDE 585
Query: 585 CHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644
CHLLPSK WLA LKFLE+PP R+VFIFITTD+DNVPR++QSRCQKYLFNKIKD DI+ARL
Sbjct: 586 CHLLPSKIWLALLKFLEDPPPRLVFIFITTDLDNVPRTVQSRCQKYLFNKIKDCDIMARL 645
Query: 645 RKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL-VGVVSEE 703
RK+SA+ENL VE DALDLIALNADGSLRDAETMLDQLSLLGKRIT+SLVNEL VGVVS+E
Sbjct: 646 RKMSADENLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITASLVNELVVGVVSDE 705
Query: 704 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-------- 755
KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY I
Sbjct: 706 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYNIVDSKYSHS 765
Query: 756 --GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSS 813
GGR++TEAE+ERLK ALKLLSEAEKQLR+SSER TWFTATLLQLGS+ SPDL+QSGSS
Sbjct: 766 FFGGRAVTEAEVERLKDALKLLSEAEKQLRVSSERSTWFTATLLQLGSLPSPDLSQSGSS 825
Query: 814 RRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRID 873
RRQS++T E+D STSREA YK SG Q MP + + ASL++ VNG S GE++SRID
Sbjct: 826 RRQSAKTIEDDLQSTSREAKAYKPKSGTQRMPWKSTT-ASLQKSVNGKSTRQGELVSRID 884
Query: 874 GHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQL 933
G+ S SK S R D A + + ++ GN I+ CRNSEKL +IWA+CI +CHSKTL+QL
Sbjct: 885 GYGSNSKTSRGRYLDGSATPAACDNSLNGNMILACRNSEKLDDIWAKCINKCHSKTLRQL 944
Query: 934 LQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPD 993
L HGKLLS++E E VLIAY+AF DGDIKSRAERFLSSITNS+E V+RRNVEV+IILL D
Sbjct: 945 LLAHGKLLSLAEDEGVLIAYLAFADGDIKSRAERFLSSITNSMEIVMRRNVEVQIILLAD 1004
Query: 994 GEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRG 1053
+H +RKVS+G
Sbjct: 1005 --VDLHQE---------------------------------------------SRKVSKG 1017
Query: 1054 SFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQA 1113
SF++LEGK +G D CS A+G +I S+K RQEIPMQRIESIIREQRLETAWLQA
Sbjct: 1018 SFSDLEGKLRGVQD---CS---AEGKDDIDSSKECRQEIPMQRIESIIREQRLETAWLQA 1071
Query: 1114 TEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNED 1173
EKG PGSL L+PEKNQVLPQE +YRQ+++ S+ S+ SSQQW++ELN+ELKILK N+
Sbjct: 1072 AEKGTPGSLTRLKPEKNQVLPQE-VYRQSNLGSMDSAAFSSQQWDEELNRELKILKTNDG 1130
Query: 1174 RVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHK 1233
+ ++KD+ G++ ++YP+ PSLLH+S+ SKEN GYESGS GGCSGLFCWNN+KP +
Sbjct: 1131 QEIQKDQLGRRADHYPMSPSLLHNST----LSKEN-GYESGSGTGGCSGLFCWNNSKPRR 1185
Query: 1234 K---GKVKGTPVRSRKGGHFSLFVDCTKAKKSESRLRR 1268
+ G+VKGTPVRS + FSLF +C K+KK +++ RR
Sbjct: 1186 RAKVGQVKGTPVRSCRTRRFSLFGECGKSKKIQNKCRR 1223
|
Source: Gossypium arboreum Species: Gossypium arboreum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070732|ref|XP_002303217.1| predicted protein [Populus trichocarpa] gi|222840649|gb|EEE78196.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1504 bits (3895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1304 (65%), Positives = 993/1304 (76%), Gaps = 105/1304 (8%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
M+EMR RL LKKELTQIRKAAR LRDPGTTSS A + AAAS S SA
Sbjct: 1 MSEMRFSDPSRLHLKKELTQIRKAARVLRDPGTTSS--------WKSARSAAAASTSASA 52
Query: 56 WKINNNNKQL------VDEDNNVSINNG-------NVNGKEKRVFLCNWKNQKSSSETSA 102
WK N + NN S + G N NG +K+VFL NWK+QK SSE SA
Sbjct: 53 WKHFENENAIQNGGTTASHSNNSSTHLGSHFKSVLNNNGSDKKVFLYNWKSQKYSSEKSA 112
Query: 103 VARNDDDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENRASS-IFRCRDA 161
+ RND DD + S SV ES+DDSLSDARN GDSKSDTYLGE R+ + IFR RDA
Sbjct: 113 LPRNDADD-------NCESCSVQESLDDSLSDARNVGDSKSDTYLGETRSPAMIFRRRDA 165
Query: 162 NLVSVATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILAR-------NSAALGLGRDE 214
NLVS P+M+RAM K+K K+ T D L+RYQ+K++ L R +LGLGRD
Sbjct: 166 NLVS---PSMRRAMGVKKKGKKTNTRLDVLSRYQEKEMNLRRLLKGHPSMGLSLGLGRDA 222
Query: 215 SVEQSDDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPAL 274
VEQSDDTE+Y NSED RK SGASPLLLKLKHKNWSHS SK L+ RKEDSSY +STPAL
Sbjct: 223 IVEQSDDTEEYSNSEDLRKISGASPLLLKLKHKNWSHSPSKFLRTSRKEDSSYCHSTPAL 282
Query: 275 STSSYNRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRG 334
STSS N+Y NRNPST+GSWDATT S+ND DD DHLDLPGR GCGIPCYWSKRTP++RG
Sbjct: 283 STSSCNKYRNRNPSTVGSWDATTTSMNDGDDEDGDHLDLPGRHGCGIPCYWSKRTPRYRG 342
Query: 335 VCGS-CCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANN 393
VCGS CCSPSLSDTLRRKGSS+LCGSQ+MYH R RS S+SNKRR+ SR+ Q LPLLA++
Sbjct: 343 VCGSSCCSPSLSDTLRRKGSSMLCGSQSMYHRRLRSCSLSNKRRIGSRTGQAFLPLLADS 402
Query: 394 GDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEE 452
GDG GSSIGTG SDDELSTN+GELDLEAL RLDGRRWSS CR+QDGLEIVALNG+ E+E
Sbjct: 403 GDGIGGSSIGTGHSDDELSTNYGELDLEALCRLDGRRWSS-CRNQDGLEIVALNGDGEDE 461
Query: 453 GVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512
G ++NIRSLSQKYKP FF ELIGQNIVVQSL+N ISRGRIA VYLFQGPRGTGKTS A+I
Sbjct: 462 GTVQNIRSLSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARI 521
Query: 513 FSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
F++ALNC++T++ KPCG CRECND SGK+R+ EVDGT+KKG+D+VRY+LK +S G P
Sbjct: 522 FASALNCMSTEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKKISRGPPL 581
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
S R+KVF+IDECHLLPSK WLAFLKFLEEPPQRVVFIF+TTD DNVPR++QSRCQKYLF
Sbjct: 582 GSSRYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLF 641
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL 692
+KIKD DIVARLRKIS EENL+VE +ALDLIALNADGSLRDAETMLDQLSLLGK+IT+SL
Sbjct: 642 SKIKDRDIVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQLSLLGKKITTSL 701
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
VNELVG VS+EKLLELLELAMSS+TAETVKRAR+LMDSG+DPMVLMSQLASLIMDIIAGT
Sbjct: 702 VNELVGDVSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGT 761
Query: 753 YT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
Y IG ++LTEAELERLKHAL+LLSEAEKQLR+SS+R TWFTATLLQLGS
Sbjct: 762 YNVVYAKHGDSLIGTQNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGST 821
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNS 862
S DLT S SSRRQSSRTTEEDPSS S+E+ VYK S QY P+ + SP+SL +NG+S
Sbjct: 822 PSMDLTLSSSSRRQSSRTTEEDPSSVSKESNVYKPNSDAQYFPRRSSSPSSLYRAINGHS 881
Query: 863 RHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCI 922
H GE + +KP RL D+ N + GN + +NS+KL +IW +CI
Sbjct: 882 SHQGE-------YEFNAKP--PRLMDS-------NDEMTGNKVFRYKNSDKLDDIWEKCI 925
Query: 923 ERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRR 982
E+CHS+TL+QLL HGKLLSISEV+ L YVAF D DIK+RAERFLSSITNSIE VLR
Sbjct: 926 EKCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDEDIKARAERFLSSITNSIEIVLRC 985
Query: 983 NVEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQI 1042
NVEVRI+L+ DG S+ + +EL +G ++TETT A ER GKA S A YSD +SQ+
Sbjct: 986 NVEVRIVLVSDGLDSLIYANQSELQEGHRQTETTLANERGGKANWSGAVVGYSDLESQE- 1044
Query: 1043 PVNVARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIR 1102
+ K+SRGSFN D N+ G +QE+PMQRIESIIR
Sbjct: 1045 ---ESAKLSRGSFN--------------------DANA------GEKQEMPMQRIESIIR 1075
Query: 1103 EQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELN 1162
EQRLETAWLQ EKG PGSL HL+PEKNQVLPQED Y+QN MES+ S+ LSSQ+WEDELN
Sbjct: 1076 EQRLETAWLQVAEKGTPGSLSHLKPEKNQVLPQEDTYQQNQMESIDSATLSSQKWEDELN 1135
Query: 1163 QELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSG 1222
ELK+LK+ + RVL+KD+ GK + YP+ PSLLH SS++ N SKE+ GYES S GGCSG
Sbjct: 1136 HELKVLKMQDQRVLRKDQIGKMVDYYPMSPSLLHGSSYVANGSKESLGYESSSAGGGCSG 1195
Query: 1223 LFCWNNTKPHKKGKVKGTPVRSR-KGGHFSLFVDCTKAKKSESR 1265
LFCWNN++ + + K K TPV R + G FSLF +C K KKSESR
Sbjct: 1196 LFCWNNSRSN-RAKAKATPVGPRGRSGRFSLFGECAKQKKSESR 1238
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449431904|ref|XP_004133740.1| PREDICTED: uncharacterized protein LOC101212356 [Cucumis sativus] gi|449478091|ref|XP_004155220.1| PREDICTED: uncharacterized protein LOC101227259 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1479 bits (3829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1302 (63%), Positives = 991/1302 (76%), Gaps = 72/1302 (5%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
MAE+R +L LKKELTQIRKAAR LRDPGTTSSWKSPLSSSRS+ AA A A +G A
Sbjct: 1 MAEVRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVMAATATAVVAGGA 60
Query: 56 WKINNNNKQLVDE--------DNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARND 107
N N + D V + N N N K+K+++L NWK+ KSSSE SA +N+
Sbjct: 61 SSSLNKNLECETRRYSGQSQLDAIVPLRNENRNPKDKKIYLYNWKSHKSSSEKSATLQNE 120
Query: 108 DDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVA 167
D D + D+++ S + S+D SLSDARNGGDSKSDTYLG+ +S +FRC DANLVS +
Sbjct: 121 DHDGNDDNNDGSYSVPGV-SLDGSLSDARNGGDSKSDTYLGDLYSSMVFRCGDANLVSYS 179
Query: 168 TPAMKRAMAAKRKSKRHKTLSDSLTRYQQK--------QIILARNSAALGLGRDESVEQS 219
P+ KR A K+KSK+H + D L+R+QQK +++ S ++ +D+S+EQS
Sbjct: 180 GPSAKRTSAFKKKSKKHCSHLDVLSRHQQKGPGPLMGRKLLEGHPSLSINFSQDDSIEQS 239
Query: 220 DDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSY 279
DDTEDY NSEDFR+YS ASPLLLKLKHK++ H SSK L+ RKEDSSYSYSTPALSTSSY
Sbjct: 240 DDTEDYSNSEDFRRYSAASPLLLKLKHKSF-HPSSKFLRNSRKEDSSYSYSTPALSTSSY 298
Query: 280 NRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSC 339
NRYVNRNPST+GSWD TT S+ND DD +DD LD PGRQGCGIPCYWSKRTPKHRG+CGSC
Sbjct: 299 NRYVNRNPSTVGSWDGTTTSINDADDEVDDRLDFPGRQGCGIPCYWSKRTPKHRGICGSC 358
Query: 340 CSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAG 399
CSPSLSDTLRRKGSSIL GSQ++Y RR S S+KRR AS SA+GVLPLL N+ DG G
Sbjct: 359 CSPSLSDTLRRKGSSILFGSQSIYS--RRKSINSSKRRFASGSARGVLPLLTNSADGGVG 416
Query: 400 SSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENI 458
SSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRS +GLEIVALNGE E G E+
Sbjct: 417 SSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSHEGLEIVALNGEVEGGGTPEST 476
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RS SQKYKP+FF+ELIGQNIVVQSL+N ISRGRIAPVYLFQGPRGTGKT+ A+IF+AALN
Sbjct: 477 RSFSQKYKPMFFNELIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTAAARIFAAALN 536
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+A ++ KPCGYCREC DF++GK ++ +EVDGTNKKG+D++RY LK LS+G SA R+K
Sbjct: 537 CLAPEENKPCGYCRECTDFMAGKQKDLLEVDGTNKKGIDKIRYQLKLLSSGQSSAFFRYK 596
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+F++DECHLLPSK WLAFLK EEPPQRVVFIFITTD+D+VPR+IQSRCQKYLFNKIKD
Sbjct: 597 IFLVDECHLLPSKAWLAFLKLFEEPPQRVVFIFITTDLDSVPRTIQSRCQKYLFNKIKDC 656
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
D+V RL++ISA+ENL+V+ DALDLIA+NADGSLRDAETML+QLSLLGKRIT+SLVNELVG
Sbjct: 657 DMVERLKRISADENLDVDLDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVG 716
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI--- 755
+VS+EKLLELL LAMSS+TAETVKRARELMDSGVDP+VLMSQLASLIMDIIAGTY I
Sbjct: 717 IVSDEKLLELLALAMSSNTAETVKRARELMDSGVDPLVLMSQLASLIMDIIAGTYNIIDT 776
Query: 756 -------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
GGRSL+EAE+ERLKHALK LSEAEKQLR+SSER TWFTATLLQLGS+ SPD T
Sbjct: 777 KDGASIFGGRSLSEAEVERLKHALKFLSEAEKQLRVSSERSTWFTATLLQLGSISSPDFT 836
Query: 809 QSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEV 868
Q+GSSRRQS +TT++DPSSTS + YK+ S Q MP N SP SL NGN + ++
Sbjct: 837 QTGSSRRQSCKTTDDDPSSTSNGTIAYKQKSFAQLMPPNLGSPTSLCNLKNGNYNNQADM 896
Query: 869 LSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSK 928
+ +D SKP+H + + + S+ + N + +NSEKL IW CIERCHSK
Sbjct: 897 VPMVDNLIYNSKPTHKQFIEGKDSSFSREDVTLRNMVFRSKNSEKLNSIWVHCIERCHSK 956
Query: 929 TLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
TL+QLL HGKLLSISE E LIAYVAF D DIKSRAERFLSSITNS+E VLR NVEVRI
Sbjct: 957 TLRQLLYAHGKLLSISESEGTLIAYVAFEDVDIKSRAERFLSSITNSMEMVLRCNVEVRI 1016
Query: 989 ILLPDGEASIHHGISNEL-PKGLKKTETTAAIE-REGKALCSNANDNYSDSDSQQIPVNV 1046
ILLPDGEAS +S + P ++T A+E ++L +A S SDS Q+P
Sbjct: 1017 ILLPDGEASTAAKLSEGVEPDKERRTSNLNAMEGYSNRSLMLDATYQ-STSDSSQLPT-- 1073
Query: 1047 ARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRL 1106
E +H N DG ++ RRQEIPMQRIESIIREQRL
Sbjct: 1074 ------------------ESNHQN------DG------SRDRRQEIPMQRIESIIREQRL 1103
Query: 1107 ETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELK 1166
ETAWLQA EKG PGSL L+PEKNQVLPQ+ Y ++ M+ + S+ SS++WEDELN+ELK
Sbjct: 1104 ETAWLQAMEKGTPGSLSRLKPEKNQVLPQDGSYYKDQMDEMNSTEDSSRKWEDELNRELK 1163
Query: 1167 ILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCW 1226
+LK+ +D + +K++ G++ + Y I PS+LHD S +GN +K+N GYES S AGGCSGLFCW
Sbjct: 1164 VLKVGDDILAQKEQVGRRADRYAISPSILHDGSMVGNSNKDNLGYESSSAAGGCSGLFCW 1223
Query: 1227 NNTKPHKKGKVKGTPVRSRKGGHFSLFVDCTKAKKSESRLRR 1268
N++KPHK+ KV+ VRSR G FSLF +C K++ S SR RR
Sbjct: 1224 NSSKPHKRAKVRANHVRSRN-GRFSLFGECGKSRNSGSRFRR 1264
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520145|ref|XP_003528725.1| PREDICTED: uncharacterized protein LOC100814391 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1454 bits (3765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1294 (63%), Positives = 959/1294 (74%), Gaps = 99/1294 (7%)
Query: 8 LQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLV 66
L LKKELTQIRKAAR LRDPGTTSSWKSPLSSSRS+AA W + +++L
Sbjct: 6 LHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAA-----------WNNDTASRRLT 54
Query: 67 DEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIE 126
+ N N K+KRVFL NWKN KSSSE +D + ++++D+GSSS++
Sbjct: 55 TISQ---LGPNNTNDKDKRVFLYNWKNYKSSSEKY-------NDEEEEEEDDDGSSSLLG 104
Query: 127 SVD-DSLSDARNGGDSKSDTYLG--------ENRASSIFRCRDANLVSVATPAMKRAMAA 177
D DSLSDARNG DSKSDTYL SSIFRC DANLVS +R +
Sbjct: 105 DRDRDSLSDARNGCDSKSDTYLAAAVGGGGGGGTRSSIFRCGDANLVS------RRTVPV 158
Query: 178 KRKSKRHKTLSDSLTRYQQ----KQIILARNSAALG-----LGRDESVEQSDD-TEDYCN 227
K+KSK++ D L +YQ K+ + + + G RD+SVE SDD TEDY N
Sbjct: 159 KKKSKKNNPHFDFLAKYQHHRPGKKFVSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTN 218
Query: 228 SEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNP 287
SE R SG SPLLLKL+ KNWS SSSK L+ RKEDSSYSYSTPALSTSSYNRY +R P
Sbjct: 219 SEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYP 278
Query: 288 STIGSWDATTASLNDNDDAMDD--HLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLS 345
ST+GSWD TT S+ND D + HLDLPGRQGCGIPCYWSKRTPKHRG+CGSC SPSLS
Sbjct: 279 STLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLS 338
Query: 346 DTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTG 405
DTLRRKGSS+LCGSQT+Y RRS+S S+KRR++ RSA+GV+PLL N+GD R GSS+GTG
Sbjct: 339 DTLRRKGSSMLCGSQTIYPRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTG 398
Query: 406 RSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQK 464
RSDDELSTNFGELDLE LSRLDGRRWSSSCRSQ+GLEIVALNGE E +G EN RS SQK
Sbjct: 399 RSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQK 458
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
Y+P+FF ELIGQN+VVQSL++ +SRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC + ++
Sbjct: 459 YRPMFFGELIGQNVVVQSLISAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPNE 518
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDE 584
+KPCGYCREC DFISGKS + +EVDGTNK+G+D+ RY+LK LS G SASP++ +FVIDE
Sbjct: 519 SKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDE 578
Query: 585 CHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644
CHLLPSKTWL FLKFLEEPPQRVVFIFIT+D+DNVPR+IQSRCQKYLFNKIKDGDIV RL
Sbjct: 579 CHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRL 638
Query: 645 RKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEK 704
RKIS +ENL+VE DALDLIA+NADGSLRDAETML+QLSLLGKRIT+SLVNELVGVVS+EK
Sbjct: 639 RKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEK 698
Query: 705 LLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI--------- 755
LLELLELAMSSDT ETVKRARELMDSGVDPMVLMSQLA LIMDIIAG+Y +
Sbjct: 699 LLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSF 758
Query: 756 -GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSR 814
GGRSL ++ELERLK+ALKLLSEAEKQLR SSER TWFTATLLQLGS SPDLTQS SSR
Sbjct: 759 FGGRSLNQSELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSR 818
Query: 815 RQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDG 874
RQS +TTE+DPSS SR+ S PQY+P+ + AS ++ VN +S H ++ S+I+G
Sbjct: 819 RQSCKTTEDDPSSVSRDVTSCMHKSDPQYVPRKSAYTASQQKAVNESSHHQKDISSKIEG 878
Query: 875 HNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLL 934
SKPS+ + D G+ VS + +V N + C +S KL +IW CIERCHSKTL+QLL
Sbjct: 879 LK--SKPSNGPVIDDGSTVVSSDDLMVENRMFRCIDSGKLCDIWVHCIERCHSKTLRQLL 936
Query: 935 QVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDG 994
HGKL+S+ EVE VL+AYVAFGD DIK R ERFL SITNS+E VLRRNVEVRII LPDG
Sbjct: 937 HNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPDG 996
Query: 995 EASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGS 1054
E + GLK+ E+T A E+E + N ++YS S
Sbjct: 997 EGENQVNL-----LGLKQAESTVAGEKEERKGHMNRTESYS------------------S 1033
Query: 1055 FNE-LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQA 1113
F L+G + + S+ + A+GN K RRQ+ PMQRIESIIREQRLETAWLQA
Sbjct: 1034 FPPLLDGNLQSTNASSD---ILAEGN----GVKERRQDNPMQRIESIIREQRLETAWLQA 1086
Query: 1114 TEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSS-QQWEDELNQELKILKLNE 1172
EKG+PGSL LRPE+NQVL Q + + MES+ S+ S Q WEDELN E+K+L L
Sbjct: 1087 VEKGSPGSLSRLRPEENQVLLQNAV---DPMESMDSTRFPSHQHWEDELNNEVKVLSLKN 1143
Query: 1173 DRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPH 1232
RV +KD+ G+K + YP+ PSLLHD+S K+N GYESGS AGGC G CWN +KP
Sbjct: 1144 GRVPQKDQIGRKADRYPMSPSLLHDNSLATISGKDNLGYESGSGAGGC-GFLCWNKSKPR 1202
Query: 1233 KKGKVK-GTPVRSRKGGHFSLFVDCTKAKKSESR 1265
+ KVK GTPVR+R+ F+LF DCTK KK E R
Sbjct: 1203 RVVKVKGGTPVRARRAATFTLFGDCTKPKKRERR 1236
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564432|ref|XP_003550458.1| PREDICTED: uncharacterized protein LOC100791561 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1422 bits (3680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1295 (63%), Positives = 957/1295 (73%), Gaps = 98/1295 (7%)
Query: 1 MAEMR-GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKI 58
M+EMR L LKKELTQIRKAAR LRDPGTTSSWKSPLSSSRS+AA W
Sbjct: 1 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAA-----------WNK 49
Query: 59 NNNNKQLVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDED 118
+ +++ + N K+KRVFL NWKN KSSSE +D+ + +DD+D
Sbjct: 50 DTASRRF-------TTPNDKDKDKDKRVFLYNWKNYKSSSEKY------NDEEEEEDDDD 96
Query: 119 EGSSSVIESVD-DSLSDARNGGDSKSDTYLGENRA-----SSIFRCRDANLVSVATPAMK 172
+GSSS++ D DSLSDARNG DSKSDTYL SSIFRC DANLVS +
Sbjct: 97 DGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAADGGGGARSSIFRCGDANLVS------R 150
Query: 173 RAMAAKRKSKRHKTLSDSLTRYQQKQIILARNSAALGL---------GRDESVEQSDD-T 222
RA+ K+KSK++ D L +YQ + + S++ L RD+SVE SDD T
Sbjct: 151 RAVPVKKKSKKNNPHFDFLAKYQHHRPGRKKLSSSKALLEGHPSPFFNRDDSVEHSDDDT 210
Query: 223 EDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRY 282
EDY NSE R SG SPLLLKL+ KNWS SSSK L+ RKEDSSYSYSTPALSTSSYNRY
Sbjct: 211 EDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRY 270
Query: 283 VNRNPSTIGSWDATTASLNDNDDAMDD--HLDLPGRQGCGIPCYWSKRTPKHRGVCGSCC 340
+R PST+GSWD TT S+ND D + HLDLPGRQGCGIPCYWSKRTPKHR +CGSC
Sbjct: 271 GHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRRMCGSCY 330
Query: 341 SPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGS 400
SPSLSDTLRRKGSS+LCGSQ++Y RRS+S S+KRR++ RSA+GV+PLL N+GD R GS
Sbjct: 331 SPSLSDTLRRKGSSMLCGSQSIYPTHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGS 390
Query: 401 SIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIR 459
S+GTG SDDELSTNFGELDLE LSRLDGRRWSSSCRSQ+GLEIVALNGE E E EN R
Sbjct: 391 SVGTGWSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYESTPENNR 450
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
S SQKY+P+FF EL GQNIVVQSL+N +SRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC
Sbjct: 451 SFSQKYRPMFFGELFGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 510
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ D++KPCGYCREC DFISGKS + +EVDGTNK+G+D+ RY+LK LS+G SASP++ +
Sbjct: 511 ASPDESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSSGSSSASPQYTI 570
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
FVIDECHLLPSKTWL FLKFLEEPP RVVFIFIT+D+DNVPR+IQSRCQKYLFNKIKDGD
Sbjct: 571 FVIDECHLLPSKTWLGFLKFLEEPPLRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGD 630
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
IV RLRKIS +ENL+VE DALDLIA+NADGSLRDAETML+QLSLLGKRIT+SLVNELVGV
Sbjct: 631 IVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGV 690
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI---- 755
VS+EKLLELLELAMSSDT ETVKRARELMDSGVDPMVLMSQLA LIMDIIAG+Y +
Sbjct: 691 VSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTK 750
Query: 756 ------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQ 809
GGRSL E+ELERLK+ALKLLSEAEKQLR SSER TWFTATLLQLGS SPDLTQ
Sbjct: 751 PDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQ 810
Query: 810 SGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVL 869
S SSRRQS +TTE+DPSS SR+ S PQY+PQ + AS ++ VN NS H ++
Sbjct: 811 SSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPQKSAYTASQQKAVNDNSHHQKDIS 870
Query: 870 SRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKT 929
S+I+G + SKPS S + D G+ VS + +VGNT+ C +S KL IW CIERCHSKT
Sbjct: 871 SKIEGFSLKSKPSSSPVIDDGSTVVSSDDLMVGNTMFRCIDSGKLCYIWVHCIERCHSKT 930
Query: 930 LKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRII 989
L+QLL HGKL+S+ EVE VL+AYVAF D DIK R ERFL SITNS+E VLRRNVEVRII
Sbjct: 931 LRQLLHNHGKLVSVCEVEGVLVAYVAFEDADIKVRVERFLRSITNSMEMVLRRNVEVRII 990
Query: 990 LLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARK 1049
LP+GE LP GLK+ E+T A E+E + N ++YS
Sbjct: 991 HLPNGEGENQ----VNLP-GLKQAESTVAGEKEQRKSHMNGTESYS-------------- 1031
Query: 1050 VSRGSFNE-LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLET 1108
SF L+G + S+ + A+GN + RRQ+ PMQRIESIIREQRLET
Sbjct: 1032 ----SFPPLLDGNLQSTAASSD---ILAEGN----GVRERRQDNPMQRIESIIREQRLET 1080
Query: 1109 AWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSS-QQWEDELNQELKI 1167
AWLQA EKG+PGSL LRPEKNQVLPQ + + +ES+ S+ S Q WED+ N E+K+
Sbjct: 1081 AWLQAVEKGSPGSLSRLRPEKNQVLPQNGV---DPIESMDSTRFPSHQHWEDDPNDEVKV 1137
Query: 1168 LKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWN 1227
L L R+ +KD+ G+K + +P+ PSLLHD+S K+N GYESGS AGGC G CWN
Sbjct: 1138 LSLKNGRIPQKDQIGRKTDRFPMSPSLLHDNSLATISGKDNLGYESGSGAGGC-GFLCWN 1196
Query: 1228 NTKPHKKGKVK-GTPVRSRKGGHFSLFVDCTKAKK 1261
+KP + KVK GTPVR+ + F+LF DCTK K
Sbjct: 1197 KSKPRRVIKVKGGTPVRAGRAATFTLFGDCTKPNK 1231
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129822|ref|XP_002328811.1| predicted protein [Populus trichocarpa] gi|222839109|gb|EEE77460.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1419 bits (3674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1306 (64%), Positives = 957/1306 (73%), Gaps = 147/1306 (11%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
M+EMR RL LKKELTQIRKAAR LRDPGT+SSWKSPL+S+RS A AAA+++ ++
Sbjct: 1 MSEMRFSDPSRLHLKKELTQIRKAARVLRDPGTSSSWKSPLNSARSAATMAAAAASTSAS 60
Query: 56 -WKINNNNKQLVDEDN-----------NVSINNGNVNGKEKRVFLCNWKNQKSSSETSAV 103
WK + + + +GN +GK+KRVFL NWK+QKSSSE SA+
Sbjct: 61 AWKHFETENAIQNGGGGGSHNNNSAHLDSHFKSGNNHGKDKRVFLYNWKSQKSSSEKSAL 120
Query: 104 ARNDDDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENR-ASSIFRCRDAN 162
ARND DD D S S+ S+DDSLSDARN GDSKSDTYLGE R A+ IFRCRDAN
Sbjct: 121 ARNDADD-------DYESCSIQGSLDDSLSDARNAGDSKSDTYLGETRSAAMIFRCRDAN 173
Query: 163 LVSVATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILAR-------NSAALGLGRDES 215
LVS P+M+RAM K+KSK+ D L+RYQQK++ L R LGLGRD+
Sbjct: 174 LVS---PSMRRAMGIKKKSKKTNARFDVLSRYQQKEMNLRRLLKGHPSMGLGLGLGRDDV 230
Query: 216 VEQSDDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALS 275
VEQSDDTE+Y NSE RK SGASPLLLKLKHKN SHS SKLL+ RKEDSSYS+STPALS
Sbjct: 231 VEQSDDTEEYSNSEYLRKISGASPLLLKLKHKNRSHSPSKLLRTTRKEDSSYSHSTPALS 290
Query: 276 TSSYNRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGV 335
SSY++Y RNPS +GSWDATT S+ND DD DDHLDLPGRQGCGIPCYWSKRTP++RGV
Sbjct: 291 ASSYDKYRKRNPSNVGSWDATTTSVNDGDDEDDDHLDLPGRQGCGIPCYWSKRTPRYRGV 350
Query: 336 CGS-CCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNG 394
CGS CCSPSLSDTLRRKGSS+ CGSQ +YH RRRS S+SNKRR+ SR+ +LPLL N+G
Sbjct: 351 CGSSCCSPSLSDTLRRKGSSMFCGSQPLYHRRRRSWSISNKRRIGSRTGHALLPLLTNSG 410
Query: 395 DGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEG 453
DG GSSIGTG SDDELSTN+GELDLEALSRLDGRRWSS CRSQDGLEIVALNG+ EEEG
Sbjct: 411 DGIGGSSIGTGLSDDELSTNYGELDLEALSRLDGRRWSS-CRSQDGLEIVALNGDGEEEG 469
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
ENI SLSQKYKP+FF ELIGQNIVVQSL N ISRGRIAPVYLFQGPRG GKTS A+IF
Sbjct: 470 TPENIGSLSQKYKPVFFSELIGQNIVVQSLTNAISRGRIAPVYLFQGPRGIGKTSAARIF 529
Query: 514 SAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
++ALNC + ++ KPCGYCREC+D ISGK+R+ EVDGT+KKG+D+VRY+LK +S P
Sbjct: 530 ASALNCTSAEEIKPCGYCRECSDSISGKTRDLWEVDGTDKKGIDKVRYLLKKISHRPPLG 589
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S +KVF+IDECHLLPSK WLAFLKFLEEPPQRVVFIF+TTD DNVPR++QSRCQKYLFN
Sbjct: 590 SSHYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFN 649
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLV 693
KIKDGDIVARLRKIS EENL+VE ALDLI+LNADGSLRDAETMLDQLSLLGK+IT+SLV
Sbjct: 650 KIKDGDIVARLRKISKEENLDVELGALDLISLNADGSLRDAETMLDQLSLLGKKITTSLV 709
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
NELVGVVS+EKLLELLELAMSSDTAETVKRAR+LMDSGVDPMVLMSQLASLIMDIIAGTY
Sbjct: 710 NELVGVVSDEKLLELLELAMSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTY 769
Query: 754 TI----------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+ G +LTEAELERLKHAL+LLSEAEKQLR+SS+R TWFTATLLQLGS
Sbjct: 770 NVVDAKHGDSLFGTHNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGSTP 829
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
S DLTQS SSRRQSSRTTEEDPSS S+E+ VYK S QY+ Q + SP SL +NG S
Sbjct: 830 SMDLTQSSSSRRQSSRTTEEDPSSASKESKVYKTKSNAQYLTQRSSSPPSLYREINGCSS 889
Query: 864 HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIE 923
GE G N +K SRL ++ + S + I GN I +NSEKL +IW +CIE
Sbjct: 890 QQGEF-----GFN--AKAPRSRLVNSRTSSTSLDDEITGNMIFRYKNSEKLDDIWEKCIE 942
Query: 924 RCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRN 983
+CHS+TL+QLL HGKLLSISEV+ L YVAF D DIK+RAERFLSSITNSIE VLRRN
Sbjct: 943 KCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDQDIKARAERFLSSITNSIEIVLRRN 1002
Query: 984 VEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIP 1043
VEVRIIL+ D E P
Sbjct: 1003 VEVRIILITD----------EEFP------------------------------------ 1016
Query: 1044 VNVARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIRE 1103
K+S+GSFN+ + GE G+R E+PMQRIESIIRE
Sbjct: 1017 -----KLSKGSFNDANAENNGE---------------------GKR-EMPMQRIESIIRE 1049
Query: 1104 QRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQ 1163
QRLETAWLQA EKG PGSL L+PEKNQVLPQ+D Y+QN ELN
Sbjct: 1050 QRLETAWLQAAEKGTPGSLSCLKPEKNQVLPQDDTYQQN-----------------ELNH 1092
Query: 1164 ELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGL 1223
ELK+LK+ RV KD+ G ++YPI PSLLH SS++ N SKE+ GYES S GGCSGL
Sbjct: 1093 ELKVLKMQNRRVHHKDQIGHMVDHYPISPSLLHGSSYVVNGSKESLGYESSSAGGGCSGL 1152
Query: 1224 FCWNNTKPHKKGKVKGTPVRSR-KGGHFSLFVDCTKAKKSESRLRR 1268
CWN ++ H + KVK TPV+ R + G FSLF +C K KK +SR+ R
Sbjct: 1153 LCWNTSRSH-RAKVKETPVQPRGRSGRFSLFGECAKQKKPDSRITR 1197
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814494|ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp. lyrata] gi|297320968|gb|EFH51389.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1345 bits (3481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1289 (58%), Positives = 934/1289 (72%), Gaps = 104/1289 (8%)
Query: 7 RLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQL 65
+L LKKELTQIRKA R LRDPGTTSSWKSPL SSRS+A AS +G +
Sbjct: 11 KLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVAVFETPASRNGGS---------- 60
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
+ + GKEK+VFL NWK QKSSSE S +A+N ++ + ++++ +
Sbjct: 61 -SSQFPIRGESSTNRGKEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEEDASSWTQAS 119
Query: 126 ESVDDSLSDARNGGDSKSDTYLGENRASSI-FRCRDANLVSVATPAMKRAMAAKRKSKRH 184
+ DD +SDARNGGDSKSD+YLG+ +++S+ FRCRD NL S M+++ K K
Sbjct: 120 VNDDDDVSDARNGGDSKSDSYLGDIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKKSK 179
Query: 185 KTLS----DSLTRYQQKQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSGASP 239
+ +S D L++YQ ++ I+ARN A SDDTE+ NSEDFRK +GASP
Sbjct: 180 QKISSSRLDFLSKYQPREDIVARNCNA----------GSDDTEEELSNSEDFRKVTGASP 229
Query: 240 LLLKLKHKNWSHSSSKLLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATT 297
LL KLKHKNWS SSSKLL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD TT
Sbjct: 230 LLKKLKHKNWSRSSSKLLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWDGTT 289
Query: 298 ASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILC 357
SLND DD +DD+LDLPGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSSILC
Sbjct: 290 TSLNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILC 349
Query: 358 GSQTMYHGRRRSSSVSN-KRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFG 416
GSQ++Y R SS K+++A RSAQGVLPLL GDGR GSS+GTG SDDELSTN+G
Sbjct: 350 GSQSVYRRHNRHSSGGYIKQKIACRSAQGVLPLLTYGGDGRGGSSLGTGLSDDELSTNYG 409
Query: 417 ELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENIRSLSQKYKPIFFDELIG 475
ELDLEA SRLDGRRWS+S RSQDGLE VAL+GE E+G E IRS SQKY+P+FF+ELIG
Sbjct: 410 ELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEGEDGSTPETIRSFSQKYRPMFFEELIG 469
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
Q+IVVQSL+N + R RIAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC+ECN
Sbjct: 470 QSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECN 529
Query: 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLA 595
+F+SGKS++F E+DG NKKG D+VRY+LK+L LP S +KVFVIDECHLLP KTWL+
Sbjct: 530 EFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPLKTWLS 589
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNV 655
FLKFLE P Q+VVFIFITTD++NVPR+IQSRCQK+LF+K+KD DIV RL+KI+++ENL+V
Sbjct: 590 FLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDV 649
Query: 656 EPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSS 715
+ ALDLIA+NADGSLRDAETML+QLSLLGKRIT++LVNELVGVVS+EKLLELLELA+SS
Sbjct: 650 DLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSS 709
Query: 716 DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAEL 765
DTAETVKRAREL+D G DP+VLMSQLASLIMDIIAGTY + GR+LTEA++
Sbjct: 710 DTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFLDGRNLTEADM 769
Query: 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDP 825
E LKHALKLLSEAEKQLR+S++R TWFTATLLQLGSM SP T +GSSRRQSSR T++DP
Sbjct: 770 EGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDP 829
Query: 826 SSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSR 885
SS SRE + YK+ G + + A SPAS+ + NGN H + LSR+ +N Y S S+
Sbjct: 830 SSISREVMAYKQRIGGLHFSKLA-SPASVIKR-NGNHSHEAKALSRVIDNNCYKSSSSSQ 887
Query: 886 LKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISE 945
+ ++ A S ++ ++ R+SEKL +IW +CIERCHSKTL+QLL HGKL+SISE
Sbjct: 888 VIESEASIASHENSVASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISE 947
Query: 946 VERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNE 1005
VE +L+AY+AFG+ DIK RAERFLSSITNSIE VLRR+VEVRIILLP+ E I
Sbjct: 948 VEGILVAYIAFGETDIKLRAERFLSSITNSIEMVLRRSVEVRIILLPETELLI------- 1000
Query: 1006 LPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFKGE 1065
+P +K E T N S G N + G
Sbjct: 1001 VPHQTRKPEMT----------------NKS-----------------GHLNNIAG----- 1022
Query: 1066 DDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAPGSLGHL 1125
+ A+ + E+ S++ R ++PMQRIESIIREQRLETAWLQ +K PGS+ +
Sbjct: 1023 --------INAESDVEVGSSEESRSKLPMQRIESIIREQRLETAWLQTADKDTPGSIIRV 1074
Query: 1126 RPEKNQVLPQEDIYRQNHMESLL-SSGLSSQQWEDELNQELKILKLNEDRVLKKDENGKK 1184
+PE+NQ+LPQED YRQ ++ S + SSGL++ W DELN E+K+LK+ ++ L+++ G +
Sbjct: 1075 KPERNQILPQEDTYRQPNVASAISSSGLTTHHWVDELNNEVKLLKIGDNGELQENLTGTR 1134
Query: 1185 GENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGK---VKGTP 1241
G++ P+ PSLLHD++F GN GYESGS GC+ LFCW K ++ K VKGTP
Sbjct: 1135 GQHCPLSPSLLHDTNF-GNNKDNLGGYESGSGRVGCNILFCWKTKKTQRRSKSKQVKGTP 1193
Query: 1242 VRSRKG--GHFSLFVDCTKAKKSESRLRR 1268
VRSR+ FSLF C K +K+E +RR
Sbjct: 1194 VRSRRNRKSRFSLFNGCAKPRKAEGNIRR 1222
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18395372|ref|NP_565285.1| AAA-type ATPase-like protein [Arabidopsis thaliana] gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana] gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] gi|330250491|gb|AEC05585.1| AAA-type ATPase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1337 bits (3461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1293 (58%), Positives = 932/1293 (72%), Gaps = 116/1293 (8%)
Query: 7 RLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASG---SAWKINNNN 62
+L LKKELTQIRKA R LRDPGTTSSWKSPL SSRS+A AS +G S + I +
Sbjct: 11 KLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVALLETPASRNGGSSSQFPIRGES 70
Query: 63 KQLVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSS 122
+ N GKEK+VFL NWK QKSSSE S +A+N ++ + ++D +
Sbjct: 71 -------------STNRRGKEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEDASSWTQ 117
Query: 123 SVIESVDDSLSDARNGGDSKSDTYLGENRASSI-FRCRDANLVSVATPAMKRAMAAKRKS 181
+ + DD SDARNGGDS Y E +++S+ FRCRD NL S M+++ K
Sbjct: 118 ASVNDDDDV-SDARNGGDS----YRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKK 172
Query: 182 KRHKTLS----DSLTRYQQKQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSG 236
K K +S D L++YQ + I+ARN A SDDTE+ NSED RK +G
Sbjct: 173 KSKKKISSSRLDCLSKYQPRDDIVARNCNA----------GSDDTEEELSNSEDLRKVTG 222
Query: 237 ASPLLLKLKHKNWSHSSSKLLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWD 294
ASPLLLKLK KNWS SSS+LL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD
Sbjct: 223 ASPLLLKLKQKNWSRSSSRLLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWD 282
Query: 295 ATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSS 354
TT S+ND DD +DD+LDLPGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSS
Sbjct: 283 GTTTSVNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSS 342
Query: 355 ILCGSQTMY--HGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
ILCGSQ++Y H R S S K+++A RSAQGVLPLL+ GDGR GSS+GTG SDDELS
Sbjct: 343 ILCGSQSVYRRHNRHSSGGYS-KQKIACRSAQGVLPLLSYGGDGRGGSSLGTGLSDDELS 401
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENIRSLSQKYKPIFFD 471
TN+GELDLEA SRLDGRRWS+S RSQDGLE VAL+GEEEEG E IRS SQKY+P+FF+
Sbjct: 402 TNYGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFE 461
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
ELIGQ+IVVQSL+N + R RIAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC
Sbjct: 462 ELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYC 521
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
+ECNDF+SGKS++F E+DG NKKG D+VRY+LK+L LP S +KVFVIDECHLLPSK
Sbjct: 522 KECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSK 581
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
TWL+FLKFLE P Q+VVFIFITTD++NVPR+IQSRCQK+LF+K+KD DIV RL+KI+++E
Sbjct: 582 TWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDE 641
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+V+ ALDLIA+NADGSLRDAETML+QLSLLGKRIT++LVNELVGVVS+EKLLELLEL
Sbjct: 642 NLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLEL 701
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLT 761
A+SSDTAETVKRAREL+D G DP+VLMSQLASLIMDIIAGTY + GR+LT
Sbjct: 702 ALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLT 761
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
EA++E LKHALKLLSEAEKQLR+S++R TWFTATLLQLGSM SP T +GSSRRQSSR T
Sbjct: 762 EADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRAT 821
Query: 822 EEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKP 881
++DP+S SRE + YK+ G + ++A SPAS+ + NGN H + SR+ +N Y
Sbjct: 822 DDDPASVSREVMAYKQRIGGLHFSKSA-SPASVIKR-NGNHSHEAKPFSRVIDNNCYKSS 879
Query: 882 SHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLL 941
S S++ ++ S +I ++ R+SEKL +IW +CIERCHSKTL+QLL HGKL+
Sbjct: 880 SSSQMIESEGSIASHENSIASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLI 939
Query: 942 SISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHG 1001
SISEVE +L+AY+AFG+ DIK RAERFLSSITNSIE VLRR+VEVRIILLP+ E +
Sbjct: 940 SISEVEGILVAYIAFGENDIKLRAERFLSSITNSIEMVLRRSVEVRIILLPETELLV--- 996
Query: 1002 ISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGK 1061
+P +K E T N S G N + G
Sbjct: 997 ----VPHQTRKPEMT----------------NKS-----------------GHLNNIAG- 1018
Query: 1062 FKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAPGS 1121
L A+ + E+ S+ R ++PMQRIESIIREQRLETAWLQ +K PGS
Sbjct: 1019 ------------LNAETDVEVGSSVESRSKLPMQRIESIIREQRLETAWLQTADKDTPGS 1066
Query: 1122 LGHLRPEKNQVLPQEDIYRQNHMESLL-SSGLSSQQWEDELNQELKILKLNEDRVLKKDE 1180
+ ++PE+NQ+LPQED YRQ ++ S + SSGL++ QW DELN E+K+LK+ ++ L+++
Sbjct: 1067 IIRVKPERNQILPQEDTYRQTNVASAISSSGLTTHQWVDELNNEVKLLKIGDNGELQENL 1126
Query: 1181 NGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGK---V 1237
G +G++ P+ PSLLHD++F GN GYESGS GC+ LFCWN K ++ K V
Sbjct: 1127 TGTRGQHCPLSPSLLHDTNF-GNNKDNLGGYESGSGRVGCNILFCWNTKKTQRRSKSKQV 1185
Query: 1238 KGTPVRSRKG--GHFSLFVDCTKAKKSESRLRR 1268
KGTPVRSR+ FSLF C K +K+E +RR
Sbjct: 1186 KGTPVRSRRNRKSRFSLFNGCAKPRKAEGNIRR 1218
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1268 | ||||||
| TAIR|locus:2065299 | 1218 | STI "STICHEL" [Arabidopsis tha | 0.706 | 0.735 | 0.592 | 0.0 | |
| TAIR|locus:2012497 | 1116 | AT1G14460 [Arabidopsis thalian | 0.597 | 0.679 | 0.597 | 3.3e-282 | |
| TAIR|locus:2121934 | 857 | AT4G24790 [Arabidopsis thalian | 0.271 | 0.401 | 0.511 | 5.4e-101 | |
| TAIR|locus:2172013 | 966 | AT5G45720 [Arabidopsis thalian | 0.264 | 0.347 | 0.415 | 5.6e-80 | |
| TIGR_CMR|GSU_0094 | 579 | GSU_0094 "DNA polymerase III, | 0.253 | 0.556 | 0.327 | 1.5e-45 | |
| TIGR_CMR|DET_0585 | 559 | DET_0585 "DNA polymerase III, | 0.328 | 0.745 | 0.304 | 3.1e-45 | |
| TIGR_CMR|SPO_3550 | 583 | SPO_3550 "DNA polymerase III, | 0.222 | 0.483 | 0.351 | 2e-44 | |
| UNIPROTKB|Q97RF7 | 551 | dnaX "DNA polymerase III, gamm | 0.227 | 0.524 | 0.348 | 1.2e-43 | |
| TIGR_CMR|CHY_2675 | 511 | CHY_2675 "putative DNA polymer | 0.247 | 0.614 | 0.312 | 3.3e-43 | |
| TIGR_CMR|BA_0019 | 562 | BA_0019 "DNA polymerase III, g | 0.227 | 0.514 | 0.335 | 4.3e-43 |
| TAIR|locus:2065299 STI "STICHEL" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2623 (928.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 554/935 (59%), Positives = 662/935 (70%)
Query: 82 KEKRVFLCNWKNQKSSSETSAVARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXARNGGDS 141
KEK+VFL NWK QKSSSE S +A+N ARNGGDS
Sbjct: 77 KEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEDASSWTQASVNDDDDVSD-ARNGGDS 135
Query: 142 KSDTYLGENRASSI-FRCRDANLVSVATPXXXXXXXXXXXXXXHKTLS----DSLTRYQQ 196
Y E +++S+ FRCRD NL S K +S D L++YQ
Sbjct: 136 ----YRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKKSKKKISSSRLDCLSKYQP 191
Query: 197 KQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSGASPLLLKLKHKNWSHSSSK 255
+ I+ARN A G SDDTE+ NSED RK +GASPLLLKLK KNWS SSS+
Sbjct: 192 RDDIVARNCNA---G-------SDDTEEELSNSEDLRKVTGASPLLLKLKQKNWSRSSSR 241
Query: 256 LLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATTASXXXXXXXXXXXXXX 313
LL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD TT S
Sbjct: 242 LLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWDGTTTSVNDGDDELDDNLDL 301
Query: 314 PGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGXXXXXXXX 373
PGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSSILCGSQ++Y
Sbjct: 302 PGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILCGSQSVYRRHNRHSSGG 361
Query: 374 XXXX-MASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWS 432
+A RSAQGVLPLL+ GDGR GSS+GTG SDDELSTN+GELDLEA SRLDGRRWS
Sbjct: 362 YSKQKIACRSAQGVLPLLSYGGDGRGGSSLGTGLSDDELSTNYGELDLEAQSRLDGRRWS 421
Query: 433 SSCRSQDGLE-IXXXXXXXXXXXXXXIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGR 491
+S RSQDGLE + IRS SQKY+P+FF+ELIGQ+IVVQSL+N + R R
Sbjct: 422 TSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSR 481
Query: 492 IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT 551
IAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC+ECNDF+SGKS++F E+DG
Sbjct: 482 IAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDFMSGKSKDFWELDGA 541
Query: 552 NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611
NKKG D+VRY+LK+L LP S +KVFVIDECHLLPSKTWL+FLKFLE P Q+VVFIF
Sbjct: 542 NKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIF 601
Query: 612 ITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSL 671
ITTD++NVPR+IQSRCQK+LF+K+KD DIV RL+KI+++ENL+V+ ALDLIA+NADGSL
Sbjct: 602 ITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSL 661
Query: 672 RDAETMLDQLSLLGKRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSG 731
RDAETML+QLSLLGKRIT++LVN A+SSDTAETVKRAREL+D G
Sbjct: 662 RDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDTAETVKRARELLDLG 721
Query: 732 VDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAELERLKHALKLLSEAEKQ 781
DP+VLMSQLASLIMDIIAGTY + GR+LTEA++E LKHALKLLSEAEKQ
Sbjct: 722 ADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLTEADMEGLKHALKLLSEAEKQ 781
Query: 782 LRLSSERCTWFTATLLQLGSMHSPDLXXXXXXXXXXXXXXEEDPSSTSREAVVYKRMSGP 841
LR+S++R TWFTATLLQLGSM SP ++DP+S SRE + YK+ G
Sbjct: 782 LRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDPASVSREVMAYKQRIGG 841
Query: 842 QYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDA-GALAVSQNGNI 900
+ ++A SPAS+ + NGN H + SR+ +N Y S S++ ++ G++A +N +I
Sbjct: 842 LHFSKSA-SPASVIKR-NGNHSHEAKPFSRVIDNNCYKSSSSSQMIESEGSIASHEN-SI 898
Query: 901 VGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGD 960
++ R+SEKL +IW +CIERCHSKTL+QLL HGKL+SISEVE +L+AY+AFG+ D
Sbjct: 899 ASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGEND 958
Query: 961 IKSRAERFLSSITNSIETVLRRNVEVRIILLPDGE 995
IK RAERFLSSITNSIE VLRR+VEVRIILLP+ E
Sbjct: 959 IKLRAERFLSSITNSIEMVLRRSVEVRIILLPETE 993
|
|
| TAIR|locus:2012497 AT1G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2268 (803.4 bits), Expect = 3.3e-282, Sum P(4) = 3.3e-282
Identities = 481/805 (59%), Positives = 575/805 (71%)
Query: 205 SAALGLGRDESVEQSDDTEDYCNSEDF-RKYSGASPLLLKLKHKNWSHSSSKLLKG-GRK 262
++ L + RDES D+TED+ NSE+F K S SPLLLKLK KNWS SSSK L+G ++
Sbjct: 180 ASGLSVVRDES----DETEDFSNSENFPTKVS--SPLLLKLKRKNWSRSSSKFLRGTSKR 233
Query: 263 EDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATTASXXXXXXXXXXXXXXPGRQGCGI 321
EDSS++ STPALSTSSYN Y RNPST+GSW+ GRQGCGI
Sbjct: 234 EDSSHTCNSTPALSTSSYNMYGIRNPSTVGSWE------DGDDELDDDNLDFKGRQGCGI 287
Query: 322 PCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGXXXXXXXXXXXXMASR 381
P YW+KR KHRG C SCCSPS SDTLRRKGSSILCGSQ++Y +A R
Sbjct: 288 PFYWTKRNLKHRGGCRSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHSSGRFNKQKLALR 347
Query: 382 SAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGL 441
SA+GVLPLL GD R GSSIG G SDD+LST+FGE+DLEA SRLDGRRWSS C+SQDG
Sbjct: 348 SAKGVLPLLKYGGDSRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGRRWSSCCKSQDG- 406
Query: 442 EIXXXXXXXXXXXXXXIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGP 501
I+SLSQKYKP+FFDELIGQ+IVVQSL+N + +GR+A VYLFQGP
Sbjct: 407 --EREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGP 464
Query: 502 RGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560
RGTGKTSTA+I SAALNC V T++ KPCGYC+EC+D++ GKSR+ +E+D K G ++VR
Sbjct: 465 RGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVR 524
Query: 561 YILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVP 620
Y+LK L P +S R+KVFVIDECHLLPS+TWL+ LKFLE P Q+ VF+ ITTD+DNVP
Sbjct: 525 YLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVP 584
Query: 621 RSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
R+IQSRCQKY+FNK++DGDIV RLRKI+++ENL+VE ALDLIALNADGSLRDAETML+Q
Sbjct: 585 RTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQ 644
Query: 681 LSLLGKRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQ 740
LSL+GKRIT LVN A+SSDTAETVK+AREL+D G DP+++MSQ
Sbjct: 645 LSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQ 704
Query: 741 LASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCT 790
LASLIMDIIAG Y + R+LTEA+LERLKHALKLLSEAEKQLR+S++R T
Sbjct: 705 LASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRST 764
Query: 791 WFTATLLQLGSMHSPDLXXXXXXXXXXXXXXEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
WF ATLLQLGSM SP EE S SRE + YK+ SG Q N S
Sbjct: 765 WFIATLLQLGSMPSPGTTHTGSSRRQSSRATEE---SISREVIAYKQRSGLQC--SNTAS 819
Query: 851 PASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRN 910
P S+R+ +GN + EV S S L+ ++A S + +TCRN
Sbjct: 820 PTSIRK--SGNL--VREV--------KLSSSSSEVLESDTSMA-SHDDTTASTMTLTCRN 866
Query: 911 SEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLS 970
SEKL +IW +C++RCHSKTLKQLL HGKLLSISEVE +L+AY+AFG+G+IK+RAERF+S
Sbjct: 867 SEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKARAERFVS 926
Query: 971 SITNSIETVLRRNVEVRIILLPDGE 995
SITNSIE VLRRNVEVRIILL + E
Sbjct: 927 SITNSIEMVLRRNVEVRIILLSETE 951
|
|
| TAIR|locus:2121934 AT4G24790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 845 (302.5 bits), Expect = 5.4e-101, Sum P(4) = 5.4e-101
Identities = 182/356 (51%), Positives = 235/356 (66%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSLSQK++P FDEL+GQ +VV+ L++TI RGRI VYLF GPRGTGKTST+KIF+AALN
Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C++ ++PCG C EC + SG+ R+ ME D +R ++K SA LP S RF
Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIK--SASLPPVSSRF 356
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF+IDEC LL +TW L L+ Q VFI +T++++ +PR++ SR QKY F+K+ D
Sbjct: 357 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 416
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXX 697
DI +L KI EE ++ + A+D IA +DGSLRDAE MLDQLSLLGKRIT+SL
Sbjct: 417 ADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 476
Query: 698 XXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
AMSSDT+ TV RARELM S +DPM L+SQLA++IMDIIAG
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 758 -----RSLT----EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
R LT E E+++L++ALK+LS+AEK LR S + TW T LLQL + S
Sbjct: 537 SATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDS 592
|
|
| TAIR|locus:2172013 AT5G45720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 5.6e-80, Sum P(4) = 5.6e-80
Identities = 146/351 (41%), Positives = 219/351 (62%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+S +QKY P F +L+GQN+VVQ+L N I++ R+ +Y+F GP GTGKTS A++F+ ALN
Sbjct: 343 QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALN 402
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +T+Q+KPCG C C + GK+R E+ K D + K + +
Sbjct: 403 CHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV--KSFDFENLLDK---TNIRQQQKQQL 457
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V + D+C + + W K ++ P+RVVF+ + + +D +P I SRCQK+ F K+KD
Sbjct: 458 VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDV 517
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXX 698
DI+ L+ I+++E ++++ DAL L+A +DGSLRDAE L+QLSLLG RI+ LV
Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVG 577
Query: 699 XXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG- 757
A+S+DT TVK R +M++G++P+ LMSQLA++I DI+AG+Y
Sbjct: 578 LISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKD 637
Query: 758 ---------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ L++ ++E+LK ALK LSE+EKQLR+S+++ TW TA LLQL
Sbjct: 638 QCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQL 688
|
|
| TIGR_CMR|GSU_0094 GSU_0094 "DNA polymerase III, gamma and tau subunits" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 108/330 (32%), Positives = 176/330 (53%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L GQ V ++L N I GRIA +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C C + +G S + +E+DG + G+D +R + +++ LPS R+K+F
Sbjct: 66 QGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKY-LPSRL-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ +P +I SRCQ++ F +I +
Sbjct: 124 IIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNXXXXX 699
VARLR I E +++ ++L ++A DGS+RD+ ++LDQ L+ G+ + V
Sbjct: 184 VARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLGV 243
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI--MDIIAGTYTIGG 757
+ DT + + + G + +L + I+ G
Sbjct: 244 VDRRLLLEASAAVLGRDTRSVLGVVARVDEFGYNMRQFCGELIDHFRNLTIMRAVGDAGD 303
Query: 758 R-SLTEAELERLKHALK--LLSEAEKQLRL 784
L+EAEL+ ++ LL + ++ + +
Sbjct: 304 LLDLSEAELQSVREQASSALLEDLQRHMTI 333
|
|
| TIGR_CMR|DET_0585 DET_0585 "DNA polymerase III, gamma and tau subunits, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 3.1e-45, P = 3.1e-45
Identities = 132/433 (30%), Positives = 209/433 (48%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 66
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK P+ + +KV+
Sbjct: 67 NQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRE-LKEKVQYAPALA-NYKVY 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 125 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDM 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNXXXXX 699
+L KIS E +N+EP+AL LIA +A GS RD E +L Q++ G I+ V
Sbjct: 185 SRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGI 244
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGTYTIGGR 758
+ D ++ ++ G+D +L + I + + G
Sbjct: 245 SGDERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGSL 304
Query: 759 SLTEAELERLKHA-----LKLLSEAEK---QLRLSSERCTWFTATLLQLGSMHSPDLXXX 810
LT E + L+ L+ +++A K QL SS+ + + L + + +PD
Sbjct: 305 ELTADEKKALQKVSAITNLEGITKAIKAFSQLDFSSDTASSLSFELALVDASLNPDTAPA 364
Query: 811 XXXXXXXXXXXEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASL-REPVNGNSRHLGEVL 869
+ + + S E + + Q +NA PA+ R ++ L
Sbjct: 365 TIPPQAKLPAPKTEKPAVSNEPPQKEAKAEIQDKTKNASEPAAASRTGAKESAPKLTRTA 424
Query: 870 SRIDGHNSYSKPS 882
++ Y+ P+
Sbjct: 425 IPVEEKPKYTAPA 437
|
|
| TIGR_CMR|SPO_3550 SPO_3550 "DNA polymerase III, gamma and tau subunits" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 102/290 (35%), Positives = 160/290 (55%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G++ +R I+ S +AS
Sbjct: 72 GPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIID--SVRYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS-LVN 694
+ D++A +R+I+ E + DAL LI A+GS RDA ++LDQ G TS+ V
Sbjct: 190 EPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGAGETSAEQVR 249
Query: 695 XXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+ D + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDLAEI 299
|
|
| UNIPROTKB|Q97RF7 dnaX "DNA polymerase III, gamma and tau subunits" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 102/293 (34%), Positives = 162/293 (55%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNXX 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++
Sbjct: 181 DIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 XXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
D + + L D+G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLL 293
|
|
| TIGR_CMR|CHY_2675 CHY_2675 "putative DNA polymerase III, gamma/tau subunits" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 100/320 (31%), Positives = 173/320 (54%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F E++GQ +V+ L N ++ ++A YLF GPRGTGKT+TAK+ + A+NC
Sbjct: 4 ALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C + N E+D + +G+D +R + + + L A ++KV
Sbjct: 64 EHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIK--LVPAQGKYKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ V+FI TT+ + VP +I SRCQ++ F +I
Sbjct: 122 YIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKT 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXX 699
I L+ I+ +E L E +AL LIA ++G LRDA +++DQ+ + +IT
Sbjct: 182 IWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGF 241
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI--MDIIAGTYTIGG 757
++ + + E+++ G+D + + Q+ + +++I +
Sbjct: 242 VSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIKNGIEV-- 299
Query: 758 RSLTEAELERLKHALKLLSE 777
L LE+L+ L E
Sbjct: 300 EELMPEVLEKLRSEAALWEE 319
|
|
| TIGR_CMR|BA_0019 BA_0019 "DNA polymerase III, gamma and tau subunits" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 4.3e-43, P = 4.3e-43
Identities = 98/292 (33%), Positives = 158/292 (54%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNXXX 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 XXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.7.7 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1268 | |||
| TIGR02397 | 355 | TIGR02397, dnaX_nterm, DNA polymerase III, subunit | 1e-133 | |
| COG2812 | 515 | COG2812, DnaX, DNA polymerase III, gamma/tau subun | 3e-86 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 3e-83 | |
| PRK05563 | 559 | PRK05563, PRK05563, DNA polymerase III subunits ga | 3e-73 | |
| PRK06305 | 451 | PRK06305, PRK06305, DNA polymerase III subunits ga | 3e-70 | |
| PRK07133 | 725 | PRK07133, PRK07133, DNA polymerase III subunits ga | 1e-69 | |
| PRK14953 | 486 | PRK14953, PRK14953, DNA polymerase III subunits ga | 4e-69 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 6e-69 | |
| PRK05896 | 605 | PRK05896, PRK05896, DNA polymerase III subunits ga | 4e-68 | |
| PRK14965 | 576 | PRK14965, PRK14965, DNA polymerase III subunits ga | 7e-68 | |
| PRK09111 | 598 | PRK09111, PRK09111, DNA polymerase III subunits ga | 6e-65 | |
| PRK14962 | 472 | PRK14962, PRK14962, DNA polymerase III subunits ga | 2e-61 | |
| PRK14963 | 504 | PRK14963, PRK14963, DNA polymerase III subunits ga | 6e-61 | |
| PRK08451 | 535 | PRK08451, PRK08451, DNA polymerase III subunits ga | 3e-59 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 1e-57 | |
| PRK14961 | 363 | PRK14961, PRK14961, DNA polymerase III subunits ga | 2e-57 | |
| PRK06647 | 563 | PRK06647, PRK06647, DNA polymerase III subunits ga | 4e-57 | |
| PRK14955 | 397 | PRK14955, PRK14955, DNA polymerase III subunits ga | 5e-57 | |
| PRK14969 | 527 | PRK14969, PRK14969, DNA polymerase III subunits ga | 3e-56 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 2e-55 | |
| PRK14964 | 491 | PRK14964, PRK14964, DNA polymerase III subunits ga | 9e-55 | |
| PRK06645 | 507 | PRK06645, PRK06645, DNA polymerase III subunits ga | 1e-54 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 1e-53 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 1e-51 | |
| PRK08691 | 709 | PRK08691, PRK08691, DNA polymerase III subunits ga | 8e-50 | |
| PRK14970 | 367 | PRK14970, PRK14970, DNA polymerase III subunits ga | 9e-50 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 1e-48 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 5e-48 | |
| PRK14957 | 546 | PRK14957, PRK14957, DNA polymerase III subunits ga | 5e-46 | |
| PRK14958 | 509 | PRK14958, PRK14958, DNA polymerase III subunits ga | 1e-44 | |
| PRK14956 | 484 | PRK14956, PRK14956, DNA polymerase III subunits ga | 1e-43 | |
| PRK14960 | 702 | PRK14960, PRK14960, DNA polymerase III subunits ga | 2e-43 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 3e-42 | |
| PRK14952 | 584 | PRK14952, PRK14952, DNA polymerase III subunits ga | 1e-40 | |
| pfam13177 | 161 | pfam13177, DNA_pol3_delta2, DNA polymerase III, de | 2e-36 | |
| TIGR00678 | 188 | TIGR00678, holB, DNA polymerase III, delta' subuni | 1e-35 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 2e-34 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 4e-34 | |
| PRK00440 | 319 | PRK00440, rfc, replication factor C small subunit; | 2e-27 | |
| PRK12402 | 337 | PRK12402, PRK12402, replication factor C small sub | 3e-24 | |
| PRK08058 | 329 | PRK08058, PRK08058, DNA polymerase III subunit del | 6e-21 | |
| PRK07399 | 314 | PRK07399, PRK07399, DNA polymerase III subunit del | 1e-20 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 3e-15 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 7e-14 | |
| COG1466 | 334 | COG1466, HolA, DNA polymerase III, delta subunit [ | 7e-14 | |
| PRK07940 | 394 | PRK07940, PRK07940, DNA polymerase III subunit del | 2e-13 | |
| PRK05707 | 328 | PRK05707, PRK05707, DNA polymerase III subunit del | 3e-13 | |
| PRK08699 | 325 | PRK08699, PRK08699, DNA polymerase III subunit del | 5e-13 | |
| TIGR01128 | 302 | TIGR01128, holA, DNA polymerase III, delta subunit | 8e-13 | |
| PLN03025 | 319 | PLN03025, PLN03025, replication factor C subunit; | 5e-12 | |
| PHA02544 | 316 | PHA02544, 44, clamp loader, small subunit; Provisi | 8e-11 | |
| PRK05564 | 313 | PRK05564, PRK05564, DNA polymerase III subunit del | 1e-10 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 3e-10 | |
| PRK06090 | 319 | PRK06090, PRK06090, DNA polymerase III subunit del | 3e-10 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 4e-10 | |
| PRK06964 | 342 | PRK06964, PRK06964, DNA polymerase III subunit del | 7e-10 | |
| PRK06871 | 325 | PRK06871, PRK06871, DNA polymerase III subunit del | 9e-10 | |
| PRK07276 | 290 | PRK07276, PRK07276, DNA polymerase III subunit del | 2e-09 | |
| PRK09112 | 351 | PRK09112, PRK09112, DNA polymerase III subunit del | 1e-07 | |
| COG0470 | 230 | COG0470, HolB, ATPase involved in DNA replication | 3e-07 | |
| PRK05574 | 340 | PRK05574, holA, DNA polymerase III subunit delta; | 3e-07 | |
| pfam12169 | 143 | pfam12169, DNA_pol3_gamma3, DNA polymerase III sub | 4e-07 | |
| PRK07132 | 299 | PRK07132, PRK07132, DNA polymerase III subunit del | 2e-06 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 3e-06 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 3e-06 | |
| PRK07471 | 365 | PRK07471, PRK07471, DNA polymerase III subunit del | 2e-05 | |
| PRK05818 | 261 | PRK05818, PRK05818, DNA polymerase III subunit del | 4e-05 | |
| PRK05917 | 290 | PRK05917, PRK05917, DNA polymerase III subunit del | 2e-04 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 3e-04 | |
| COG0593 | 408 | COG0593, DnaA, ATPase involved in DNA replication | 8e-04 | |
| PRK07993 | 334 | PRK07993, PRK07993, DNA polymerase III subunit del | 0.002 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 0.003 |
| >gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Score = 410 bits (1057), Expect = e-133
Identities = 152/355 (42%), Positives = 214/355 (60%), Gaps = 16/355 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L++KY+P F+++IGQ +VQ+L N I GRIA YLF GPRGTGKTS A+IF+ ALN
Sbjct: 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C + SG S + +E+D + G+D +R IL + +S ++K
Sbjct: 62 CQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILD--NVKYAPSSGKYK 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT+ +P +I SRCQ++ F +I
Sbjct: 120 VYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLE 179
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELV 697
DIV RL+KI +E + +E +AL+LIA ADGSLRDA ++LDQL G IT VNEL+
Sbjct: 180 DIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V +EKL+ELLE ++ DTAE +K E+++SGVDP + L ++ D++ T
Sbjct: 240 GLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSN 299
Query: 758 -------------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ LE L L +L EA K LR S++ W TLL+L
Sbjct: 300 LLAVLESEQEFLKELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRL 354
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355 |
| >gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 3e-86
Identities = 126/354 (35%), Positives = 190/354 (53%), Gaps = 17/354 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P FD+++GQ VV++L N + GRIA YLF GPRG GKT+ A+I + ALNC
Sbjct: 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C + G + +E+D + G+D +R I++ + R+KV+
Sbjct: 66 NGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIE--KVNYAPSEGRYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TT+ +P +I SRCQ++ F ++ +I
Sbjct: 124 IIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVGV 699
L I +E +N+E DAL LIA A+GSLRDA ++LDQ G IT V +++G+
Sbjct: 184 AKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
EKLL LLE + D E ++ EL++ G DP + L + + D++ T+
Sbjct: 244 TDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNEL 303
Query: 760 L-----TEAELERLKHALK---------LLSEAEKQLRLSSERCTWFTATLLQL 799
E + L + LL K+L+ S TL++L
Sbjct: 304 QLNTTEIEERTKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRL 357
|
Length = 515 |
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 3e-83
Identities = 165/548 (30%), Positives = 266/548 (48%), Gaps = 61/548 (11%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P FDEL+GQ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ +PCG C C +G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 NSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIER--AQFAPVQARWK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L +I+ +E++ +EP+AL L+A + G LRDAE++LDQLSLL IT V +L+G
Sbjct: 184 AMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDLLG 243
Query: 699 VVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
V E+ LL LL+ A++S+ E++ R+L+D G +P+ ++ LA+ D++
Sbjct: 244 AVPEQDLLNLLK-ALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNR 302
Query: 758 RSLT------------EA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ-LGS 801
L A LER+ + L +E QL+ S++ W TLL L S
Sbjct: 303 PDLVAVSQQTWDELCKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
++ + + + P + + + + + P + AS PV
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVP-- 418
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
A + N + L E+W Q
Sbjct: 419 -----------------------------AEPTEPSPTPPANAANAPPSLN-LEELWQQI 448
Query: 922 IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLR 981
+ + + + LL +L+S+ R +IA G ++SR + + VL
Sbjct: 449 LAKLELPSTRMLLSQQAELVSLDS-NRAVIAVSPNWLGMVQSR----KPLLEQAFAKVLG 503
Query: 982 RNVEVRII 989
R++++ +
Sbjct: 504 RSIKLNLE 511
|
Length = 620 |
| >gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 3e-73
Identities = 138/473 (29%), Positives = 239/473 (50%), Gaps = 43/473 (9%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
K++P F++++GQ + ++L N I +G+I+ YLF GPRGTGKTS AKIF+ A+NC+
Sbjct: 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP 68
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYIL---KHLSAGLPSASPRFKVF 580
+PC C C +G + +E+D + G+D +R I K+ PS + ++KV+
Sbjct: 69 DGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYA----PSEA-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V+FI TT+ +P +I SRCQ++ F +I DI
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V RL+ I +E + E +AL LIA A+G +RDA ++LDQ +S ++T E+ G
Sbjct: 184 VERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGS 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYTI 755
VS+E L +L++ + D A+ +K EL+D G DP + L + D++ + I
Sbjct: 244 VSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEI 303
Query: 756 GGRS----------LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GSMH 803
S + ++ERL + +L++A++Q++ +++ + L++L +
Sbjct: 304 LDESTENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAA 363
Query: 804 SPDLTQSGSSRRQSSRTTEE-------DPSSTSREAVVYKRMSGPQYMPQNAVSPASLRE 856
SP+ Q E+ P + E K+ + V + +
Sbjct: 364 SPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYK 423
Query: 857 PVNGNSR--------HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIV 901
+ +R GE+L + K + L ++ +A S++ ++
Sbjct: 424 VLKEATRQDLELLKNVWGEILESLKAQR---KSLRALLVNSEPVAASEDTVVL 473
|
Length = 559 |
| >gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 3e-70
Identities = 126/409 (30%), Positives = 207/409 (50%), Gaps = 16/409 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
S+KY+P F E++GQ+ VV L N + R A YLF G RGTGKT+ A+IF+ ALNC
Sbjct: 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66
Query: 521 A-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
T+ +PC C C + SG S + +E+DG + +G++ +R I + + + R+K+
Sbjct: 67 NPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQI--NETVLFTPSKSRYKI 124
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + + LK LEEPPQ V F TT+I +P +I SRCQK +I +
Sbjct: 125 YIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEET 184
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ +L I+ +E + +AL IA A GSLRDAE++ D + L K + V + +G
Sbjct: 185 IIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALG 244
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
++S++ L L E + + A+ ++ + M+SGV P + L +I+
Sbjct: 245 LLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNIL----LKQYN 300
Query: 759 SLTEA-----ELERLKHALKLLSEAEKQLRLS-SERCTWFTATLLQLGSMHSPDLTQSGS 812
+ E+L + L E+ K ++L+ E+ T + + P L+Q S
Sbjct: 301 KQLSSVATKYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQRPTLSQLVS 360
Query: 813 SRRQSSRTT--EEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVN 859
+ + T E + + + +S PQ P + SL +
Sbjct: 361 QIKSPAFTQLRLESCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAAS 409
|
Length = 451 |
| >gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 1e-69
Identities = 129/337 (38%), Positives = 198/337 (58%), Gaps = 19/337 (5%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
++L +KY+P FD+++GQ+ +VQ+L N I +I+ YLF GPRGTGKTS AKIF+ A
Sbjct: 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANA 63
Query: 517 LNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
LNC TD +PC C E + S + +E+D + G+D +R L LP+ S
Sbjct: 64 LNCSHKTDLLEPCQECIENVN----NSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSK 118
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
+K+++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SR Q++ F +I
Sbjct: 119 -YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVN 694
+ +IV+RL I +EN++ E +AL LIA + GSLRDA ++ +Q+S+ G +IT V
Sbjct: 178 SEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
EL G+VS E L+ LL L S D E + ++ + G+DP +L+ L +L+ + I +
Sbjct: 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFI--IFN 295
Query: 755 IGGRS-----LTEAELERLK----HALKLLSEAEKQL 782
+ +E +LE+LK A K + L
Sbjct: 296 KTKDNSLLEYYSEEDLEKLKIDDDFAYKFIEILFDLL 332
|
Length = 725 |
| >gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 4e-69
Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 3/289 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P FF E+IGQ IVV+ L N + R++ Y+F GPRGTGKT+ A+I + LNC+
Sbjct: 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLN 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+ +PCG C C + G + +E+D + +G+D +R + +S P ++KV++
Sbjct: 67 PQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSY-TPIKG-KYKVYI 124
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + + A LK LEEPP R +FI TT+ D +P +I SRCQ+++F+K I
Sbjct: 125 IDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIK 184
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGVV 700
L++I EE + E ALDL+A ++G +RDA ++LDQ S G+ ++T +V E +G+V
Sbjct: 185 EYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIV 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
S+E + + L L + SD E +K R L + G + QL I +I+
Sbjct: 245 SQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNIL 293
|
Length = 486 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 6e-69
Identities = 126/345 (36%), Positives = 190/345 (55%), Gaps = 18/345 (5%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
++ L +K++ F EL+GQ VVQ+L N I+ GR+A YLF GPRG GKTSTA+I + A+
Sbjct: 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62
Query: 518 NCVATDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
NC D +PCG C C G + + +E+D + +D R I++ + A R
Sbjct: 63 NCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQ--FRPALAR 120
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT++ VP +I SRCQ++ F++
Sbjct: 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHS 180
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNE 695
D+ A LRKI+A E +N+EP AL+ IA A GS+RDAE +L QL + G I+ S V
Sbjct: 181 VADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD--------------PMVLMSQL 741
L+G+ +E++ L E ++ D ++ + G D M+L S
Sbjct: 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGA 300
Query: 742 ASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
++D+ A + A LE L +K S+ + QLR +S
Sbjct: 301 DRSLLDLTADEKAALQKVSQIANLEALTKWVKAFSQLDFQLRTTS 345
|
Length = 585 |
| >gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 4e-68
Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 7/337 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+KY+P F ++IGQ ++ + LVN I ++ Y+F GPRG GKTS AKIF+ A+NC+
Sbjct: 6 FYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
C C C + +S + +E+D + G+D +R I+ +++ LP+ ++KV+
Sbjct: 66 NPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINY-LPTTF-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + W A LK LEEPP+ VVFIF TT+ +P +I SRCQ+Y F K+ + ++
Sbjct: 124 IIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSEL 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L+ I+ +E + +E +A+D IA ADGSLRD ++LDQLS I +N+ G+
Sbjct: 184 QELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V K + L+EL +D E EL G++ L +L++D++ T
Sbjct: 244 VDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINL 303
Query: 760 LTEAELERLK----HALKLLSEAEKQLRLSSERCTWF 792
L + E+LK KLLS L + +
Sbjct: 304 LKKLSKEQLKTLNLEKQKLLSIEFNTNFLLNNFVSLI 340
|
Length = 605 |
| >gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 7e-68
Identities = 126/342 (36%), Positives = 187/342 (54%), Gaps = 18/342 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L GQ V ++L N I GR+A +LF G RG GKTSTA+I + ALNC
Sbjct: 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C C + G+S + E+DG + G+D +R + +++ LPS S R+K+F
Sbjct: 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKY-LPSRS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V RLR I+ +E +++ AL L+A DGS+RD+ + LDQ L+ G + V EL+GV
Sbjct: 184 VDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGV 243
Query: 700 VSEEKLLELLELAMSSDTA---ETVKR-----------ARELMDSGVDPMVLMS-QLASL 744
V LL++ DT E V+R +EL+D + +VL +
Sbjct: 244 VDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGD 303
Query: 745 IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
++D+ A+ L+ L LL AE ++ +S
Sbjct: 304 LLDLSEAELAELRAQAAAADAADLQRHLTLLLRAEGEMAHAS 345
|
Length = 576 |
| >gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 6e-65
Identities = 118/327 (36%), Positives = 183/327 (55%), Gaps = 11/327 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71
Query: 519 CVATDQTK-----PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
D CG C + G+ + +E+D + G+D +R I++ S
Sbjct: 72 YEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIE--SVRYRPV 129
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+KV++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 130 SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLR 189
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ + A L +I+A+E + VE +AL LIA A+GS+RD ++LDQ ++ +T+
Sbjct: 190 RIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEA 249
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V +++G+ ++++L E M D A + R D+G DP+V+++ LA +
Sbjct: 250 VRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLK 309
Query: 750 AGTYTIGGRSLTEAELERLKHALKLLS 776
SL+EAE R K LS
Sbjct: 310 IVPDAAEDPSLSEAERTRGAEFAKKLS 336
|
Length = 598 |
| >gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 2e-61
Identities = 105/343 (30%), Positives = 179/343 (52%), Gaps = 19/343 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L +KY+P F E++GQ+ V + ++N + + I+ Y+F GPRGTGKT+ A+I + +LNC
Sbjct: 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCE 63
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC CR C G + +E+D + +G+D +R I + G ++KV+
Sbjct: 64 NRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRD--AVGYRPMEGKYKVY 121
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP VVF+ TT+++ VP +I SRCQ F I D I
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELI 181
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS-LLGKRITSSLVNELVGV 699
+ RL++++ E + ++ +AL IA A G LRDA TML+Q+ +IT V+E +G+
Sbjct: 182 IKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ E + + + + D ++ SG D VL+ Q +++ +
Sbjct: 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL---------- 291
Query: 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ + L ++++ + E+ + +LGS
Sbjct: 292 -ERERANDIIQVSRQLLNILREIKFAEEK-----RLVCKLGSA 328
|
Length = 472 |
| >gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 6e-61
Identities = 119/399 (29%), Positives = 194/399 (48%), Gaps = 3/399 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L Q+ +PI FDE++GQ V + L+ + +GR+ YLF GPRG GKT+TA++ + A+NC
Sbjct: 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
D KPCG C C G + +E+D + ++ VR + + + L KV
Sbjct: 63 SGEDP-KPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKV--LLAPLRGGRKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H++ + A LK LEEPP+ V+FI TT+ + +P +I SR Q + F ++ + +
Sbjct: 120 YILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEE 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I +LR++ E EP+AL L+A ADG++RDAE++L++L LG +T V E +G+
Sbjct: 180 IAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGL 239
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+E+L + D AE + A +L G L+ L + +GG
Sbjct: 240 PPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGP 299
Query: 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSR 819
E RL A+ L E ++ S+ + A L L ++ + +
Sbjct: 300 RLEGAEPRLLAAMTALDEQMERFARRSDALSLELALLHALLALGGAPSEGVAAVAPPAPA 359
Query: 820 TTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPV 858
+ E V S P A +P +P
Sbjct: 360 PADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPR 398
|
Length = 504 |
| >gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 3e-59
Identities = 102/270 (37%), Positives = 161/270 (59%), Gaps = 3/270 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ KY+P FDELIGQ V ++L + R+A YLF G RG+GKTS+A+IF+ AL C
Sbjct: 4 LALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ PC C +C + + + +E+D + +G+D +R +++ PS RFK+F
Sbjct: 64 QGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYK-PS-MARFKIF 121
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P +I SR Q + F +I I
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSI 181
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
++ L+ I +E ++ EP+AL+++A + +GSLRD T+LDQ + K IT S V +++G+
Sbjct: 182 ISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMD 729
+ KL + + ++ D + + +EL D
Sbjct: 242 LDPSKLEDFFQAILNQDKEKLFELLKELED 271
|
Length = 535 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 1e-57
Identities = 122/424 (28%), Positives = 210/424 (49%), Gaps = 31/424 (7%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-T 522
KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+ +NC T
Sbjct: 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ C C C F +S N E+D + +D +R +++ +P ++K+++I
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQ--VRIPPQIGKYKIYII 127
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE H+L + AFLK LEEPP +FI TT+ + +I SRCQ + FN+I+ DIV
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVN 187
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVVS 701
L+ ++++E + EP+AL++IA ADG +RDA ++ DQ +S G IT V E + ++
Sbjct: 188 HLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILD 247
Query: 702 EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYTI-- 755
+ L + ++ ++++ E+++ G D ++ LAS D++ A T +
Sbjct: 248 YDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLE 307
Query: 756 GGRSLTEAELERLKH--------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDL 807
G S+ + LE+ + ALKL ++ + R S + TL+QL +
Sbjct: 308 VGESIRQRYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQKGD 367
Query: 808 TQSGSSRRQSSR-------------TTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASL 854
SG + + S + ++ + S PQ Q A +P ++
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 855 REPV 858
Sbjct: 428 SVDP 431
|
Length = 614 |
| >gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 2e-57
Identities = 95/293 (32%), Positives = 171/293 (58%), Gaps = 3/293 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++K++P +F ++IGQ +V ++ N +S GRI +L G RG GKT+ A++ + +
Sbjct: 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + PC C C + G + +E+D ++ ++ +R IL ++ PS S R
Sbjct: 62 LNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYY-SPSKS-R 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L ++ A LK LEEPPQ + FI TTD++ +P++I SRC ++ I
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+ I L+ I +E+++ + AL LIA +A GS+RDA +L+ LGK I V +
Sbjct: 180 EEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
++G+++E++ L + + D+ +T+ ++ G++ ++ ++ + I
Sbjct: 240 MLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHI 292
|
Length = 363 |
| >gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 4e-57
Identities = 100/268 (37%), Positives = 152/268 (56%), Gaps = 7/268 (2%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
K +P F+ L GQ+ VV++L ++I +IA Y+F GPRG GKTS+A+ F+ LNCV
Sbjct: 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP 68
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
PCG C C + S + +E+DG + + VR I + + P AS R++V++ID
Sbjct: 69 TPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIM--FPPASSRYRVYIID 126
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E H+L + + A LK +EEPP +VFIF TT++ +P +I+SRCQ + F + I
Sbjct: 127 EVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNM 186
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGVVSE 702
L+K+ E+ + E +AL IA + GS+RDA T+ DQ+ S IT + +G+ +
Sbjct: 187 LKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGD 246
Query: 703 EKLLELLELAMSSDTAETVKRARELMDS 730
E L +L SS E K ++DS
Sbjct: 247 EFLEKL----ASSILNEDAKELLCVLDS 270
|
Length = 563 |
| >gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 5e-57
Identities = 112/387 (28%), Positives = 193/387 (49%), Gaps = 30/387 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++KY+P F ++ Q + +++ N++ GR+ Y+F G RG GKT+ A++F+ A+NC
Sbjct: 6 IARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65
Query: 521 A--------TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+ T+PCG C C DF +G S N E D + +D +R + +++ G P
Sbjct: 66 RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYG-PQ 124
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R++V++IDE H+L + AFLK LEEPP +FIF TT++ +P +I SRCQ++ F
Sbjct: 125 KG-RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNF 183
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL------SLLGK 686
+I +I +L+ I E ++V+ DAL LI A GS+RDA+++LDQ+ S
Sbjct: 184 KRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEG 243
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--- 743
I V EL+ + +E + + D + A+ ++ +G D + +L
Sbjct: 244 SIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLR 303
Query: 744 --LIMDIIAGTYTIGGRSLTEAELER---------LKHALKLLSEAEKQLRLSSERCTWF 792
L++ + T + ER + LL + +K+L+ E F
Sbjct: 304 NFLVVHNLRSTRLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRF 363
Query: 793 TATLLQLGSMHSPDLTQSGSSRRQSSR 819
LL+L + P T + + + +
Sbjct: 364 ELALLKLIEIGHPAPTAAAAPTGGAQK 390
|
Length = 397 |
| >gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 3e-56
Identities = 131/418 (31%), Positives = 206/418 (49%), Gaps = 27/418 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F EL+GQ VV++L N + + R+ YLF G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + SG+ + +EVD + +D +R +L +A RFKV+
Sbjct: 66 TGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLD--NAQYAPTRGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD +P ++ SRC ++ ++ I
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L+ I +EN+ + AL L+A A GS+RDA ++LDQ ++ G + S V ++G
Sbjct: 184 VSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ ++ L LLE ++ D A + A + + + + LA+L+ + +
Sbjct: 244 IDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIA 303
Query: 760 LTEAELERLKHALKLLSEAEKQL------------RLSSERCTWFTATLLQLGSMHSPDL 807
E +RL K LS + QL L+ + FT TLL++ + P
Sbjct: 304 DDLPERDRLLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAF-RPSE 362
Query: 808 TQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHL 865
SG+ R + P AV + P A + S R+ NGN R L
Sbjct: 363 QDSGAGRAPGA-----VPGVNRTRAVPTAAPAAP------AAATPSDRQSFNGNWRAL 409
|
Length = 527 |
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 2e-55
Identities = 125/434 (28%), Positives = 212/434 (48%), Gaps = 46/434 (10%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC- 519
+++KY+P F ++ Q + ++ N++ R+ Y+F G RG GKT+ A++F+ A+NC
Sbjct: 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65
Query: 520 -------VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+ T+PCG C C DF +G S N E D + +D +R + +++ G P
Sbjct: 66 RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYG-PQ 124
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R++V++IDE H+L + + AFLK LEEPP +FIF TT++ +P +I SRCQ++ F
Sbjct: 125 KG-RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNF 183
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL------SLLGK 686
+I +I ++L+ I E + ++ DAL LIA A GS+RDA+++LDQ+ S K
Sbjct: 184 KRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEK 243
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--- 743
I V EL+ + +E+ ++ + +D + ++ AR ++D+G D + +L
Sbjct: 244 VIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFR 303
Query: 744 --LIMDIIAGT------------YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERC 789
L++ + T Y LT A + ++ L + + +L+ E
Sbjct: 304 NFLVLYNLRSTRLIERPESVKERYQQSAGGLTPAAVMQM---TDFLMKTQGELKFQFEYQ 360
Query: 790 TWFTATLLQLGSMHSPD------LTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQY 843
F LL+L + D S ++++ E D R K P
Sbjct: 361 FRFELALLRLIELVRNDGGVAPSPAGSPDVKKKAP---EPDLPQPDRHPGPAKP-EAPGA 416
Query: 844 MPQNAVSPASLREP 857
P SPAS P
Sbjct: 417 RPAELPSPASAPTP 430
|
Length = 620 |
| >gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 9e-55
Identities = 98/275 (35%), Positives = 157/275 (57%), Gaps = 9/275 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L+ KY+P F +L+GQ+++V+ L N + +I L G G GKT+ A+I S LNC
Sbjct: 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRN---FMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+ PCG C C IS K+ N +E+D + +D ++ IL++ S LP S +
Sbjct: 62 SNGPTSDPCGTCHNC---ISIKNSNHPDVIEIDAASNTSVDDIKVILEN-SCYLP-ISSK 116
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L + + A LK LEEP V FI TT++ +P +I SRCQ++ KI
Sbjct: 117 FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIP 176
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNE 695
+V L I+ +EN+ + ++L LIA N+ GS+R+A +L+Q ++ I+ V +
Sbjct: 177 TDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRD 236
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDS 730
L+G V + L +L+E + D + REL ++
Sbjct: 237 LLGCVDKHILEDLVEAILLGDAQSALNVFRELCNT 271
|
Length = 491 |
| >gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 1e-54
Identities = 98/292 (33%), Positives = 167/292 (57%), Gaps = 10/292 (3%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P F EL GQ ++V+ L TI R+A YL G RG GKT++A+I + A+NC A
Sbjct: 12 ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71
Query: 522 ---TDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ T K C C C F + + +E+D +K +D +R I++ SA +
Sbjct: 72 LITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIE--SAEYKPLQGKH 129
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+F+IDE H+L + A LK LEEPP ++FIF TT++ +P +I SRCQ+Y ++
Sbjct: 130 KIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSF 189
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR----ITSSLV 693
+I L I+ +ENL + +AL +IA ++GS RDA ++LDQ + + + I+ ++
Sbjct: 190 EEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVI 249
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
N+++G+V ++E +E + +T + + +L S V+ + + ++ I
Sbjct: 250 NQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFI 301
|
Length = 507 |
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (506), Expect = 1e-53
Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 7/310 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL+ +Y+P F E+ GQ V L R+AP YLF G RG GKT+ A+IF+ ALNC
Sbjct: 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C +C G + +E+DG + +G+D + + + + G R+KV
Sbjct: 65 ETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAI--GYAPMEGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + A LK LEEPP RV F+ TT+ P +I SRCQ + F ++ +
Sbjct: 123 FIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAG 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
+ A L K+ E ++ +P A+ LIA A GS+RD+ ++L Q L+L R+T ++G
Sbjct: 183 LEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTYT 754
+ +E L L+E + D REL+D GVD + +L + L M AG
Sbjct: 243 LAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAA 302
Query: 755 IGGRSLTEAE 764
+ L E E
Sbjct: 303 LASLDLPEDE 312
|
Length = 624 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 1e-51
Identities = 119/418 (28%), Positives = 204/418 (48%), Gaps = 24/418 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + + R+ YLF G RG GKT+ ++I + +LNC
Sbjct: 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D +PCG CR C + +G+ +++E+D + +G+D + +L + P+A
Sbjct: 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDK-AVYAPTAG- 123
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKV++IDE H+L + + A LK LEEPP+ V FI TTD +P ++ SRC ++ ++
Sbjct: 124 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 183
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
G IV+ L I EE + E +AL L+A A GS+RDA ++ DQ ++ ++ V
Sbjct: 184 PPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVR 243
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
++G + + L+ LL+ + D A + A E+ + + LASL+ I
Sbjct: 244 GMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVV 303
Query: 755 IGG-----------RSLTE---AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
R L A+ +L + + L +E L L+ + FT TLL++
Sbjct: 304 PAAVQDDWPEADDIRRLAGRFDAQEVQLFYQIANLGRSE--LALAPDEYAGFTMTLLRML 361
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPV 858
+ ++ + + + A + P P A + A+ V
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAV 419
|
Length = 700 |
| >gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 189 bits (480), Expect = 8e-50
Identities = 118/412 (28%), Positives = 206/412 (50%), Gaps = 22/412 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V ++ L ELL ++ D A + +A+E+ V + +LA L+ + +
Sbjct: 244 VDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALA 303
Query: 760 LTEAE---LERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDL 807
+ + L RL + ++ ++ L L+ + F TLL++ + P
Sbjct: 304 HDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFA-PLA 362
Query: 808 TQSGSSRRQSSRTTEEDPSSTS--REAVVYKRMSGPQYMPQNAVSPASLREP 857
S + T + PS+ + +E K PQ P+ + ++
Sbjct: 363 AASCDANAVIENTELQSPSAQTAEKETAAKK----PQPRPEAETAQTPVQTA 410
|
Length = 709 |
| >gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 9e-50
Identities = 97/296 (32%), Positives = 161/296 (54%), Gaps = 15/296 (5%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P FD+++GQ+ + +L+N I +A LF GPRG GKT+ A+I +
Sbjct: 1 MENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILA 60
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+N GY DF S N E+D + +D +R ++ + +P +
Sbjct: 61 RKINQP--------GYDDPNEDF----SFNIFELDAASNNSVDDIRNLIDQVR--IPPQT 106
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++K+++IDE H+L S + AFLK LEEPP +FI TT+ + +I SRCQ + F +
Sbjct: 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKR 166
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLV 693
I DI L I+ +E + E DAL +IA ADG+LRDA ++ D++ + GK IT V
Sbjct: 167 ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAV 226
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
E + ++ + + + +L + + E + E++ G D ++ LAS D++
Sbjct: 227 TENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLM 282
|
Length = 367 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-48
Identities = 115/353 (32%), Positives = 190/353 (53%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + D E + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFA-PASV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRM 355
|
Length = 830 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 5e-48
Identities = 97/273 (35%), Positives = 157/273 (57%), Gaps = 8/273 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E++GQ VVQ+L N +++ R+ YLF G RG GKT+ ++I + +LNC
Sbjct: 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D PCG C+ C D SG+ ++ E+D + +G+D V+ +L+ + P
Sbjct: 66 GPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQ-AVYKPVQG- 123
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKVF+IDE H+L + + A LK LEEPP+ + F+ TTD VP ++ SRC ++ +
Sbjct: 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPM 183
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
++ L ++ A EN+ EP AL L+A A GS+RDA ++ DQ ++ ++ + V
Sbjct: 184 APETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVR 243
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRAREL 727
+++G V + L++ D V+ A EL
Sbjct: 244 QMLGSVDRSHVFRLIDALAQGDGRTVVETADEL 276
|
Length = 618 |
| >gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 5e-46
Identities = 110/411 (26%), Positives = 202/411 (49%), Gaps = 31/411 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L++KY+P F E+ GQ + SLV+ + ++ YLF G RG GKT+ ++ + LN
Sbjct: 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63
Query: 519 CVATDQTKPCGYCREC-----NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C +PC C C N FI + +E+D ++ G++ + IL ++ +PS
Sbjct: 64 CKTGVTAEPCNKCENCVAINNNSFI-----DLIEIDAASRTGVEETKEILDNIQY-MPSQ 117
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+KV++IDE H+L +++ A LK LEEPP+ V FI TTD +P +I SRC +
Sbjct: 118 G-RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLK 176
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
I DI +L+ I A+EN+N + +L+ IA +A GSLRDA ++LDQ +S G + +
Sbjct: 177 HISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQ 236
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+ +++G++ E++ ++ + +D + + L + ++ ++A + +
Sbjct: 237 IKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYS 296
Query: 753 YT------------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+T I L + +E+ +L A+K + L+ T T +L+L
Sbjct: 297 FTQSLDAVNDIDVDIINNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLI 356
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSP 851
+ +L + + + P + + + K + P+ V
Sbjct: 357 AFQKKNLID-----KTQTSKSNISPIVSKNDINLLKNTFKSE-QPKQTVKA 401
|
Length = 546 |
| >gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 1e-44
Identities = 126/411 (30%), Positives = 202/411 (49%), Gaps = 34/411 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F E+IGQ VV++L N + + + YLF G RG GKT+ ++I + LNC
Sbjct: 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C + G+ + EVD ++ ++ R +L ++ P+ RFKV+
Sbjct: 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYA-PTKG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP V FI TTD +P ++ SRC ++ ++ I
Sbjct: 124 LIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
A + + EEN+ E ALDL+A A+GS+RDA ++LDQ G ++ + V ++G
Sbjct: 184 AAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ L ++LE + + L++ GVD ++ L SL+ IA T+ +
Sbjct: 244 IEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQ-IAIIQTV-PEA 301
Query: 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSR 819
L E + E+L+ KLL + QL Q+G + DL S + +
Sbjct: 302 LIENDSEQLRQLAKLLDREDVQL-------------FYQIGLIGQRDLAYSPTPQTGFEM 348
Query: 820 T-----------TEEDPSSTSREAVVY-----KRMSGPQYMPQNAVSPASL 854
T P + S+EAVV S PQ + Q ++ A+L
Sbjct: 349 TLLRMLAFYPSAANAIPETESKEAVVTPTPKSSETSWPQLLSQLKLTGATL 399
|
Length = 509 |
| >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 1e-43
Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 19/272 (6%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
LS+KY+P FF ++I Q++ + +L N + G+I Y+F GPRG GKT+ A+I +
Sbjct: 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
LNC +PC C C + G S + +E+D + +G++ +R + ++
Sbjct: 63 RLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVK--FAPMGG 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H+L +++ A LK LEEPP +VFI TT+ +P +I SRCQ ++F K+
Sbjct: 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKV 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL------SLLGKRIT 689
+ K+ EN+ + + L IA DGS+RD + ++Q L G +I
Sbjct: 181 PLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIR 240
Query: 690 -----------SSLVNELVGVVSEEKLLELLE 710
+S + L+ + K LE+LE
Sbjct: 241 KMIGYHGIEFLTSFIKSLIDPDNHSKSLEILE 272
|
Length = 484 |
| >gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 2e-43
Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F+EL+GQN V ++L + + RGR+ YLF G RG GKT+ A+I + LNC
Sbjct: 5 LARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP--RFK 578
+ PC C C G+ + +E+D ++ ++ R +L ++ P A RFK
Sbjct: 65 TGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNV----PYAPTQGRFK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + ++ A LK LEEPP+ V F+F TTD +P ++ SRC ++ +
Sbjct: 121 VYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVD 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
+I L I +E + + DA+ IA +A GSLRDA ++ DQ G+ + V E++
Sbjct: 181 EITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEML 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
G++ + +L+ + + + + +D +++ QL S + ++
Sbjct: 241 GLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHEL 291
|
Length = 702 |
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-42
Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 39/303 (12%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F E++GQ V+ +L N + GR+ YLF G RG GKT+ A++ + LNC
Sbjct: 6 LARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65
Query: 521 ----ATDQTKPCGYCRECNDFISGKSRNF---MEVDGTNKKG-------LDRVRYILKHL 566
AT PCG C C + G F +E+D ++ LD V+Y
Sbjct: 66 TGITAT----PCGECDNCREIEQG---RFVDLIEIDAASRTKVEDTRELLDNVQY----- 113
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
P+ RFKV++IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SR
Sbjct: 114 ---APARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169
Query: 627 C-QKYLFN-KIKDGD-IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LS 682
C Q F+ K D + I +L I E + EP AL L+A ADGS+RDA ++ DQ ++
Sbjct: 170 CLQ---FHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIA 226
Query: 683 LLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA-RELMDSGVDPMVLMSQL 741
++T+ V+ ++G + +++ L LLE A+ E V +L + G D L+ +L
Sbjct: 227 SGNGQVTTDDVSAMLGTLDDDQALSLLE-ALVEGDGERVMALINQLAERGPDWEGLLVEL 285
Query: 742 ASL 744
L
Sbjct: 286 LEL 288
|
Length = 647 |
| >gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 1e-40
Identities = 97/296 (32%), Positives = 158/296 (53%), Gaps = 10/296 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F E++GQ V + L + + GRI YLF GPRG GKTS+A+I + +LNC
Sbjct: 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61
Query: 520 VATDQTKPCGYCRECNDFI-SGK-SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
PCG C C +G S + +E+D + G+D R + A A R+
Sbjct: 62 AQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDR--AFYAPAQSRY 119
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
++F++DE H++ + + A LK +EEPP+ ++FIF TT+ + V +I+SR Y F +
Sbjct: 120 RIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP 179
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---RITSSLVN 694
+ A + +I +E + V+ L+ GS RD ++LDQL L G +T
Sbjct: 180 RTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYQRAL 238
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDII 749
L+G ++ L++ A+++D A + A E ++D+G DP + L D+I
Sbjct: 239 GLLG-ATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLI 293
|
Length = 584 |
| >gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-36
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534
GQ V++ L N+I + +++ YLF GP G GK A F+ AL C +PCG C+ C
Sbjct: 1 GQPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFCENPQDDEPCGECKSC 60
Query: 535 NDFISGKSRNFMEVDGTNKK-GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTW 593
+G + + ++ K +D++R +++ S + KV++I++ +
Sbjct: 61 KRIENGNHPDVIIIEPEGKSIKIDQIRELIEEFS--KKPFEGKKKVYIIEDAEKMTESAA 118
Query: 594 LAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
A LK LEEPP+ FI +T++ + + +I+SRCQ F +
Sbjct: 119 NALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161
|
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161 |
| >gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 9/195 (4%)
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
Q L + +GR+A YLF GP G GK A + AL C +PCG C C +G
Sbjct: 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG 61
Query: 541 KSRNFMEVDGTNKK-GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKF 599
+ ++ + +D+VR +++ LS +V +I++ + A LK
Sbjct: 62 NHPDLHRLEPEGQSIKVDQVRELVEFLS--RTPQESGRRVVIIEDAERMNEAAANALLKT 119
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDA 659
LEEPP +FI IT + + +I+SRCQ F + + ++ L E A
Sbjct: 120 LEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWL-----IRQGISEEAA 174
Query: 660 LDLIALNADGSLRDA 674
L+AL A GS A
Sbjct: 175 ELLLAL-AGGSPGAA 188
|
This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-34
Identities = 85/228 (37%), Positives = 135/228 (59%), Gaps = 18/228 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC- 519
L++K++P F++++GQ+ V+ +L N +++ R+ YLF G RG GKTS A++F+ LNC
Sbjct: 6 LARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65
Query: 520 ---VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL----SAGLPS 572
AT PCG C C + G+ + +EVD ++ +D R +L ++ S G
Sbjct: 66 QGVTAT----PCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRG--- 118
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
RFKV++IDE H+L ++ A LK LEEPP+ V F+ TTD +P ++ SRC ++
Sbjct: 119 ---RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNL 175
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+ +I +L I +E L E +AL L+A A+GS+RDA ++ DQ
Sbjct: 176 KSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQ 223
|
Length = 944 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-34
Identities = 88/230 (38%), Positives = 125/230 (54%), Gaps = 18/230 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L ++Y+P F E+IGQ V + L + GRI YLF GPRG GKTS+A+I + +LNCV
Sbjct: 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64
Query: 521 --ATDQTKPCGYCRECNDFISGKSRNF--MEVDGTNKKGLD-----RVRYILKHLSAGLP 571
T PCG C C G + E+D + G+D R R A
Sbjct: 65 EGPTST--PCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRER-------AFFA 115
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
A R+K+F+IDE H++ + + A LK +EEPP+ + FIF TT+ D V +I+SR Y
Sbjct: 116 PAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYP 175
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL 681
F + + L +I A+E + VEP L L+ GS+RD+ ++LDQL
Sbjct: 176 FRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQL 225
|
Length = 824 |
| >gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 25/281 (8%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P DE++GQ +V+ L + + + P LF GP GTGKT+ A +A +
Sbjct: 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNM-PHLLFAGPPGTGKTTAAL-------ALARE 61
Query: 524 QTKPCGYCRECNDFISGKS--RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+ G+ NF+E++ ++++G+D +R +K + P FK+
Sbjct: 62 --------------LYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIF 107
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE L S A + +E Q FI + IQSRC + F+ +K +
Sbjct: 108 LDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVA 167
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
RLR I+ E + + DAL+ I ++G +R A L + GK +T V ++ G
Sbjct: 168 ERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTAR 227
Query: 702 EEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQL 741
E++ E++ELA++ D E ++ R+LM D G+ ++ Q+
Sbjct: 228 PEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQI 268
|
Length = 319 |
| >gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 86/337 (25%), Positives = 141/337 (41%), Gaps = 32/337 (9%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL--NCVA 521
KY+P ++++GQ+ VV+ L + P L QGP G+GKT+ + + L +
Sbjct: 8 KYRPALLEDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELYGDPWE 66
Query: 522 TDQTKPCGYCRECN--DFIS-GKS-----RNFMEVDGTNKKGLDRVRYILKHL---SAGL 570
+ T E N DF GK F GT+K+ KH+ A
Sbjct: 67 NNFT-------EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASY 119
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
S +K ++D L A + +E+ + FI T + I+SRC
Sbjct: 120 RPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPL 179
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITS 690
F D ++V L I+ E ++ + D L+LIA A G LR A L +L IT
Sbjct: 180 FFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITM 239
Query: 691 SLVNELVGVV-SEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQL-----AS 743
E +G V ++E + LL+ A + D + K +L+ D G+ ++ +L +
Sbjct: 240 EAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSR 299
Query: 744 LIMDIIAGTYTIGG---RSLTEAELERLKHALKLLSE 777
D +A + + LT+ +R+ LL+E
Sbjct: 300 YRGDNLARLHRLAADADARLTDGANDRI-QLEALLAE 335
|
Length = 337 |
| >gnl|CDD|181214 PRK08058, PRK08058, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 6e-21
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 7/156 (4%)
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
Q +VV+ L N+I++ R++ YLF+G +GTGK +TA + +L C+ + +PCG C C
Sbjct: 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70
Query: 536 DFISGKSRNFMEV--DGTNKKGLDRVRYILKHLS-AGLPSASPRFKVFVIDECHLLPSKT 592
SG + V DG + K D++RY+ + S +G+ S KV++I+ + +
Sbjct: 71 RIDSGNHPDVHLVAPDGQSIK-KDQIRYLKEEFSKSGVESNK---KVYIIEHADKMTASA 126
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
+ LKFLEEP I +T + + +I SRCQ
Sbjct: 127 ANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162
|
Length = 329 |
| >gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-20
Identities = 78/265 (29%), Positives = 113/265 (42%), Gaps = 39/265 (14%)
Query: 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529
F LIGQ + ++ L I + RIAP YLF GP G G+ A F L ++
Sbjct: 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL--LSQGSPSKNI 60
Query: 530 YCR--ECN--DFI--------SGK--SRNFMEVDGTNKKG-----LDRVRYILKHLSAGL 570
R E N D + GK + + E G +K L+++R I + LS
Sbjct: 61 RRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP- 119
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
P +PR KV VI++ + A LK LEE P I I +++ +I SRCQ
Sbjct: 120 PLEAPR-KVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPSPESLLPTIVSRCQII 177
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS---LRDAETMLDQLSLLGKR 687
F ++ D + L+++ EE LN+ +L+AL A GS L +
Sbjct: 178 PFYRLSDEQLEQVLKRLGDEEILNINFP--ELLAL-AQGSPGAAIANIEQLQSIP----- 229
Query: 688 ITSSLVNELVGVVSEEKLLELLELA 712
L+ +L LE LELA
Sbjct: 230 --PELLQKLEQPPK--SPLEALELA 250
|
Length = 314 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 3e-15
Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 4/199 (2%)
Query: 544 NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603
NF+E++ ++++G++ +R +K + P FK+ +DE L A + +E
Sbjct: 598 NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF 657
Query: 604 PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLI 663
V FI + IQSRC + F ++D DI RLR I+ E L + + L I
Sbjct: 658 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717
Query: 664 ALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKR 723
A+G +R A +L + L +IT V + E + E++ LA+ + + ++
Sbjct: 718 LYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREK 777
Query: 724 ARELM----DSGVDPMVLM 738
RE++ SG D +V M
Sbjct: 778 LREILLKQGLSGEDVLVQM 796
|
Length = 846 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 7e-14
Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 44/249 (17%)
Query: 461 LSQKYKPIFFDELIGQNIVV---QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
L+++ +P DE++GQ ++ + L I GR++ + + GP GTGKT+ A+I + A
Sbjct: 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGAT 60
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ F + G+ +R +++ A ++ R
Sbjct: 61 D------------------------APFEALSAVTS-GVKDLREVIEE--ARQRRSAGRR 93
Query: 578 KVFVIDECHLLPSKTWL-AFLKFLEEPPQRVVFIFITTDIDN----VPRSIQSRCQKYLF 632
+ IDE H +K A L +E+ + I TT+ N V ++ SR Q +
Sbjct: 94 TILFIDEIHRF-NKAQQDALLPHVED--GTITLIGATTE--NPSFEVNPALLSRAQVFEL 148
Query: 633 NKIKDGDIVARLRKISAEEN---LNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRIT 689
+ + DI L++ ++ + ++ +ALD +A A+G R A +L+ +L IT
Sbjct: 149 KPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSIT 208
Query: 690 SSLVNELVG 698
L+ E +
Sbjct: 209 LELLEEALQ 217
|
Length = 413 |
| >gnl|CDD|224383 COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-14
Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 594 LAFLKFLEEPPQRVVFIFITTDIDNVPRSIQ-----SRCQKYLFNKIKDGDIVARLRKIS 648
P ++ + + +D + + ++ + + ++ ++K +
Sbjct: 94 ALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRA 153
Query: 649 AEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELVGVVSEEKLL 706
E L ++ +A+ L+ G+L +++L+L K IT V E+V V+E +
Sbjct: 154 KELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIF 213
Query: 707 ELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--LIMDIIAGTYTIGGRSLTEAE 764
+L + + D + ++ R+L+ G +P+ L++ L ++ + G+SL +
Sbjct: 214 DLADALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALA-EKGKSL-QQA 271
Query: 765 LERLKH---ALKLLSEAEKQLRLSSERCT 790
+ L KL +A RLS ++
Sbjct: 272 AKSLGIPYRRKKLFKKA--ARRLSLKQLL 298
|
Length = 334 |
| >gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-13
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 470 FDELIGQNIVVQSLVN---------TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+D+L+GQ VV L + + +LF GP G+G++ A+ F+AAL C
Sbjct: 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK--GLDRVRYILKHLSAGLPSASPRFK 578
D+ CG CR C ++G + V G+D VR ++ ++A PS R++
Sbjct: 64 DPDEP-GCGECRACRTVLAGTHPDVRVVA-PEGLSIGVDEVRELV-TIAARRPSTG-RWR 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
+ VI++ L + A LK +EEPP R V++ ++V +I+SRC+
Sbjct: 120 IVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCR 169
|
Length = 394 |
| >gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 12/189 (6%)
Query: 489 RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM-- 546
RGR YL GP G GK + A+ +AAL C A CG C+ C +G +
Sbjct: 18 RGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVL 77
Query: 547 ---EVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603
E D T K +D+VR ++ + + KV +I+ + A LK LEEP
Sbjct: 78 EPEEADKTIK--VDQVRELVSFVV--QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP 133
Query: 604 PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLI 663
V + I+ + +I+SRCQ+ + + + L++ E + E + ++L+
Sbjct: 134 SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD---ERERIELL 190
Query: 664 ALNADGSLR 672
L LR
Sbjct: 191 TLAGGSPLR 199
|
Length = 328 |
| >gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 5e-13
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 33/243 (13%)
Query: 489 RGRIAPVYLFQGPRGTGKTSTAKIFSAALNC--VATDQTKPCGYCRECNDFISGKSRNFM 546
R +LF G +G GKT+ A+ + AL C A KPCG C C+ F G +F
Sbjct: 17 WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGH-KPCGECMSCHLFGQGSHPDFY 75
Query: 547 EV------DGTNKK----GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAF 596
E+ +K +D VR I+ + L S +V +I + + +
Sbjct: 76 EITPLSDEPENGRKLLQIKIDAVREIIDN--VYLTSVRGGLRVILIHPAESMNLQAANSL 133
Query: 597 LKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE 656
LK LEEPP +VVF+ ++ D V +I+SRC+K + + +A LR E E
Sbjct: 134 LKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLR-----ERGVAE 188
Query: 657 PDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD 716
P+ +A ++ L D E L L +L+ +++E +LL++L+ A D
Sbjct: 189 PEE--RLAFHSGAPLFDEEPELRALR-----------IKLLDILAEPRLLKILDYAALFD 235
Query: 717 TAE 719
+
Sbjct: 236 KEK 238
|
Length = 325 |
| >gnl|CDD|233280 TIGR01128, holA, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-13
Identities = 46/242 (19%), Positives = 94/242 (38%), Gaps = 45/242 (18%)
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY-LFNKIKDGDIV-------ARLRK 646
A ++L PP + + +D R + +K+ +IV L +
Sbjct: 66 ALEEYLANPPPDTLLLIEAPKLD-------KRKKLTKWLKALKNAEIVECKTPKEQELPR 118
Query: 647 ----ISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELVGVV 700
+ L ++PDA+ L+A +G+L L++L+L +IT V E V
Sbjct: 119 WIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDS 178
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
+ + +L + + A ++ + L+ G +P++L++ L + ++ + +
Sbjct: 179 ARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLR-LLLQLKRLAQQGG 237
Query: 761 TEAEL-----------------------ERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
A+L +L+ AL+ L+EA+ QL+ + W L
Sbjct: 238 PLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERL 297
Query: 798 QL 799
L
Sbjct: 298 LL 299
|
DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp [DNA metabolism, DNA replication, recombination, and repair]. Length = 302 |
| >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 33/280 (11%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++G V L I+R P + GP GTGKT+ ++ +A
Sbjct: 5 EKYRPTKLDDIVGNEDAVSRL-QVIARDGNMPNLILSGPPGTGKTT-------SILALAH 56
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKV 579
+ P +E++ ++ +G+D VR +K + LP R K+
Sbjct: 57 ELLGP------------NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPG--RHKI 102
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++DE + S A + +E F + IQSRC F+++ D +
Sbjct: 103 VILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQE 162
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I+ RL K+ E + P+ L+ I ADG +R A L Q + G + E V
Sbjct: 163 ILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL-QATHSGFGFVN---QENVFK 218
Query: 700 VSEEK----LLELLELAMSSDTAETVKRARELMDSGVDPM 735
V ++ + ++ + + ++L D G P
Sbjct: 219 VCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPT 258
|
Length = 319 |
| >gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 54/251 (21%), Positives = 98/251 (39%), Gaps = 43/251 (17%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
QKY+P DE I ++ + + +GRI + L GTGKT+ AK +
Sbjct: 13 QKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA--- 69
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ V+G++ + +D VR L ++ + S + KV +I
Sbjct: 70 ---------------------EVLFVNGSDCR-IDFVRNRLTRFASTV-SLTGGGKVIII 106
Query: 583 DECHLLPSKTWLAFLK-FLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD-- 639
DE L L+ F+E + FI + + + ++SRC+ F +
Sbjct: 107 DEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQI 166
Query: 640 -----IVARLRKISAEENLNVEPDAL-DLIALNADGSLRDAETMLDQLSLLGK------- 686
++ R + I E + V+ L L+ N R L + + GK
Sbjct: 167 EMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP-DFRRTINELQRYASTGKIDAGILS 225
Query: 687 RITSSLVNELV 697
+T+S ++++V
Sbjct: 226 EVTNSDIDDVV 236
|
Length = 316 |
| >gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529
F +IG + + N+I + R + ++ G G GK+ AK AL + Q
Sbjct: 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAK--EIALKILGKSQQ---- 56
Query: 530 YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP 589
RE D I K N G+D +R I++ ++ P + KV +I +
Sbjct: 57 --REYVDIIEFKPIN------KKSIGVDDIRNIIEEVNKK-PYEGDK-KVIIIYNSEKMT 106
Query: 590 SKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRK--- 646
+ AFLK +EEPP+ V I + +++ + +I+SRCQ Y N++ +I +
Sbjct: 107 EQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN 166
Query: 647 -ISAEEN 652
I EE
Sbjct: 167 DIKEEEK 173
|
Length = 313 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 620 PRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLD 679
R +++ C F ++ IV L++I +E + + +AL IA + G LR A L
Sbjct: 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204
Query: 680 QLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLM 738
++ ++T V L EE + + L+ + A+ A D DP L+
Sbjct: 205 AIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKARNADQALEA--SYDVDEDPDDLI 261
|
Length = 482 |
| >gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538
V Q+ + GRI L Q G G S ++FS AL C Q++ CG+C C
Sbjct: 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ-NYQSEACGFCHSCELMQ 69
Query: 539 SGKSRNFMEVDGTNKKG----LDRVRYI--LKHLSAGLPSASPRFKVFVIDECHLLPSKT 592
SG + + K+G ++++R L S+ L +++FVI+ +
Sbjct: 70 SGNHPDLHVIK-PEKEGKSITVEQIRQCNRLAQESSQLNG----YRLFVIEPADAMNESA 124
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
A LK LEEP +F+ +T + + +I SRCQ++
Sbjct: 125 SNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162
|
Length = 319 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 57/265 (21%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLV-------NTISRGRIAPVYLFQGPRGTGKT 507
E L+++ +P DE++GQ + L+ + G + + L+ GP GTGKT
Sbjct: 8 NEFRMPLAERLRPKSLDEVVGQ----EHLLGEGKPLRRAVEAGHLHSMILW-GPPGTGKT 62
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
+ A++ + N F + G+ +R I++
Sbjct: 63 TLARLIAGTTNA------------------------AFEALSAVT-SGVKDLREIIE--E 95
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN----VPRSI 623
A R + +DE H A L +E ++ I TT +N + ++
Sbjct: 96 ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATT--ENPSFELNPAL 151
Query: 624 QSRCQKYLFNKIKDGDIVARLRKISAEE-------NLNVEPDALDLIALNADGSLRDAET 676
SR + + + DI L++ +E + ++ +ALD + ++G R A
Sbjct: 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211
Query: 677 MLDQLSLL---GKRITSSLVNELVG 698
+L+ +L + + L+ E++
Sbjct: 212 LLELAALSAEPDEVLILELLEEILQ 236
|
Length = 436 |
| >gnl|CDD|235898 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 7e-10
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 32/172 (18%)
Query: 489 RGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECNDFISGKSRNFME 547
R R+ L G G GK A+ + L C +PCG C CN F G ++
Sbjct: 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRI 76
Query: 548 V---------------------DGTNKKG--------LDRVRYILKHLSAGLPSASPRFK 578
V D KK +++VR +L G R
Sbjct: 77 VRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGAR-- 134
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
V V+ L A LK LEEPP VF+ ++ ID + +I SRC+++
Sbjct: 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQF 186
|
Length = 342 |
| >gnl|CDD|180738 PRK06871, PRK06871, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 9e-10
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 16/161 (9%)
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
Q + +G LF+ G G + + L C +PCG C C+ F +G
Sbjct: 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAG 71
Query: 541 KSRNFMEVDGTNKK--GLDRVRYILKHLSAGLPSASPRF------KVFVIDECHLLPSKT 592
+F ++ + K G+D+VR I + +S + KV I L
Sbjct: 72 NHPDFHILEPIDNKDIGVDQVREINEKVS--------QHAQQGGNKVVYIQGAERLTEAA 123
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
A LK LEEP F+ + +I SRCQ +L +
Sbjct: 124 ANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164
|
Length = 325 |
| >gnl|CDD|180916 PRK07276, PRK07276, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 48/278 (17%)
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC---- 534
V Q + + R+ YLF G A + +L C + PCG+CR C
Sbjct: 10 VFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIE 67
Query: 535 -NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS-AGLPSASPRFKVFVIDECHLLPSKT 592
+F +E G K D +R ++K+ S +G +VF+I + +
Sbjct: 68 QGEFSDVT---VIEPQGQVIK-TDTIRELVKNFSQSGYEGKQ---QVFIIKDADKMHVNA 120
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD--------------- 637
+ LK +EEP + +T D + V +I+SR Q + F K +
Sbjct: 121 ANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPKNEAYLIQLLEQKGLLKTQ 180
Query: 638 GDIVARLRKISAE-ENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL-VNE 695
+++A+L + ++E E L L+LI AE + LL + + L V
Sbjct: 181 AELLAKLAQSTSEAEKLAQNKKFLELIDQ--------AERFVT--ILLKDKDEAYLQVAR 230
Query: 696 LVGVVSE----EKLLELLELAMSSDTAETVKRARELMD 729
LV + E +++L LL L ++ + + R ++
Sbjct: 231 LVQLADEKEEQDQVLTLLTLLLAQERMQ--VNVRTQLE 266
|
Length = 290 |
| >gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 81/367 (22%), Positives = 132/367 (35%), Gaps = 50/367 (13%)
Query: 446 LNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTG 505
L E+ L+ + S S+ L G L G++ LF+GP G G
Sbjct: 4 LMIPEQHDDLDGVPSPSEN------TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIG 57
Query: 506 KTSTA-----KIFSAALNCVATDQ-TKPCGYCRECNDFISGKS-------RNFMEVDGTN 552
K + A I S A + P G R F E G
Sbjct: 58 KATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKF 117
Query: 553 KKGL--DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610
K + D +R + LS S +++ +ID + A LK LEEPP R +FI
Sbjct: 118 KTAITVDEIRRVGHFLS--QTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175
Query: 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670
I+ + +I+SRCQ + D ++ L + + + + + + GS
Sbjct: 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKAL--SHLGSSQGSDGEITEALLQRSKGS 233
Query: 671 LRDA-----------ETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAE 719
+R A +DQL L G + ++L +S + +
Sbjct: 234 VRKALLLLNYGGLEIIATIDQL-LAGSGPDARKAHKLADALSGRESEVQFDFFRDHLLDR 292
Query: 720 TVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE---LERLKHALKLLS 776
+ AR ++G + L +LA L +II + EAE L+R + + LL
Sbjct: 293 IMAEARRAAEAG--DLALAERLARLWSEII--------EEIVEAEAYNLDRKQTVISLLE 342
Query: 777 EAEKQLR 783
+ + R
Sbjct: 343 KLHRAFR 349
|
Length = 351 |
| >gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 47/205 (22%), Positives = 72/205 (35%), Gaps = 28/205 (13%)
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDA 659
PP+ FI IT D + +I+SRCQ+ F + +A L E
Sbjct: 38 TTAPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWL-----------EDQG 86
Query: 660 LDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE----EKLLELLELAMSS 715
L+ IA A+G R A L Q + S+ L+ + E LELL+LA +
Sbjct: 87 LEEIAAVAEGDARKAINPL-QALAALEIGEESIYEALLLALPESLAQLAALELLKLAENK 145
Query: 716 DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT------------YTIGGRSLTEA 763
K L+ G+ L+ QL ++ + R L +
Sbjct: 146 FLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDG 205
Query: 764 ELERLKHALKLLSEAEKQLRLSSER 788
L ++ L QL L +
Sbjct: 206 LLALIQLENLLAELLLLQLLLEGVK 230
|
Length = 230 |
| >gnl|CDD|235511 PRK05574, holA, DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-07
Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL---GKRI 688
K+ ++ +++ ++ L ++ AL L+A +G+L L++L+LL GK I
Sbjct: 143 AQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGK-I 201
Query: 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LI 745
T V E V + + +L++ ++ ++ L G +P+ L++ L L+
Sbjct: 202 TLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLL 261
Query: 746 MDI---IAGTYTIG-----------GRSLTEAEL-----ERLKHALKLLSEAEKQL 782
+ + Y + L L ++LK A++LL+E + Q+
Sbjct: 262 LQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAETDYQI 317
|
Length = 340 |
| >gnl|CDD|152604 pfam12169, DNA_pol3_gamma3, DNA polymerase III subunits gamma and tau domain III | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
++++ V +++G+ ++++LLE + D A + R+ +G DP+V++ L L+
Sbjct: 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHL 60
Query: 748 I----IAGTYTIGGRSLTEAELERLK 769
+ IA SL E E ER+
Sbjct: 61 LTRLKIAPDAADDL-SLPEEERERIA 85
|
This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. Length = 143 |
| >gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644
A LK +EEPP+ F+ T +I+ V +I SRCQ + + I+A+L
Sbjct: 109 ALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158
|
Length = 299 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 35/171 (20%)
Query: 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533
+GQ +++L + + L GP GTGKT+ A+ + L
Sbjct: 1 VGQEEAIEALREALELPPPKNL-LLYGPPGTGKTTLARAIANEL---------------- 43
Query: 534 CNDFISGKSRNFMEVDG----TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP 589
F+ ++ + + L L L + V IDE L
Sbjct: 44 -----FRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKP-GVLFIDEIDSLS 97
Query: 590 SKTWLAFLKFLEE------PPQRVVFIFITTDIDNV--PRSIQSRCQKYLF 632
A L+ LE + V I T R++ R +
Sbjct: 98 RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIV 148
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 51/158 (32%)
Query: 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG---TN 552
L GP GTGKT+ AK + L F+E+ G +
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELG------------------------APFIEISGSELVS 36
Query: 553 K---KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-----------TWLAFLK 598
K + R+R + + P V IDE L L
Sbjct: 37 KYVGESEKRLRELFEAAKKLAPC------VIFIDEIDALAGSRGSGGDSESRRVVNQLLT 90
Query: 599 FLEE---PPQRVVFIFITTDIDNVPRSI-QSRCQKYLF 632
L+ +V+ I T D + ++ + R + +
Sbjct: 91 ELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIE 128
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 5/174 (2%)
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN 654
A LK LEEPP R +F+ ++ + +I+SRC+K + D++ L A +
Sbjct: 160 ALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDAL----AAAGPD 215
Query: 655 VEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMS 714
+ D +A A+GS+ A + L R ++L++ L + L L + A
Sbjct: 216 LPDDPRAALAALAEGSVGRALRLAGGDGLALYRRLTALLDTLPR-LDRRALHALADAAAG 274
Query: 715 SDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERL 768
D A +L+D + + + + + G + R +A L R
Sbjct: 275 RDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGEAALLARLAPDARLRRW 328
|
Length = 365 |
| >gnl|CDD|235618 PRK05818, PRK05818, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEV-DGTNKKGLDRVRYILKHLSAGLPSASPR 576
+ V T C C C ++GK +F + D N + I+ L+ PS
Sbjct: 30 SIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNR--PSVESN 87
Query: 577 -FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
K+++I L ++ + LK +EEPP+ IF T + +N+ +I SRC +Y+
Sbjct: 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLS 146
|
Length = 261 |
| >gnl|CDD|102059 PRK05917, PRK05917, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 570 LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
P SP +K+++I E + AFLK LE+PPQ V I + +P +I+SR
Sbjct: 90 HPYESP-YKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
Length = 290 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 25/159 (15%)
Query: 472 ELIGQNIVVQSLVNTISRGRI--APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529
L+G+ ++ L++ + R R P L GP GTGKTS + L + K
Sbjct: 1 RLVGREEELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLR---ELLEGLLVAAGKCDQ 57
Query: 530 YCRECNDFISGKSRNFMEVDGT-----------------NKKGLDRVRYILKHLSAGLPS 572
R S R + + ++ ++ +++ L L
Sbjct: 58 AERNPPYAFSQALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERLLAR 117
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ-RVVFI 610
A R V V+D+ ++ L + ++ +
Sbjct: 118 A--RPLVLVLDDLQWADEESLDLLAALLRRLERLPLLVV 154
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
| >gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-04
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL----SLLGKRITSSL 692
D +A LRK + + + + + L+ +A D ++R+ E L++L + IT L
Sbjct: 246 DETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDL 305
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRA 724
V +++L+ L A T E +++
Sbjct: 306 V---------KEILKDLLRAGEKITIEDIQKI 328
|
Length = 408 |
| >gnl|CDD|181190 PRK07993, PRK07993, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 9/150 (6%)
Query: 483 LVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542
LV + GR L Q G G + S L C K CG+CR C +G
Sbjct: 14 LVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTH 73
Query: 543 RNFMEVD---GTNKKGLDRVRYILKHL--SAGLPSASPRFKVFVIDECHLLPSKTWLAFL 597
++ + G + G+D VR + + L A L A KV + + LL A L
Sbjct: 74 PDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGA----KVVWLPDAALLTDAAANALL 129
Query: 598 KFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
K LEEPP+ F + + +++SRC
Sbjct: 130 KTLEEPPENTWFFLACREPARLLATLRSRC 159
|
Length = 334 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 22/123 (17%)
Query: 500 GPRGTGKTSTAKIFSAALN------CVATDQTKPCGYCRE-CNDFISGKSRNFMEVDGTN 552
G G+GKT+ + + L A P R+ S GT
Sbjct: 11 GESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKDLLRKILRALGLPLSG------GTT 64
Query: 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFI 612
+ L+ + LK + +IDE L + + + + I +
Sbjct: 65 AELLEAILDALKRR---------GRPLLIIDEAQHLSLEALEELRDLYDLSEKGIQVILV 115
Query: 613 TTD 615
T
Sbjct: 116 GTP 118
|
Length = 124 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1268 | |||
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 100.0 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 100.0 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 100.0 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 100.0 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 100.0 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 100.0 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 100.0 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 100.0 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.98 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.97 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.97 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.97 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.96 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.95 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.95 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.95 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.94 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 99.94 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 99.94 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 99.94 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 99.94 | |
| PRK05907 | 311 | hypothetical protein; Provisional | 99.93 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 99.93 | |
| PRK05629 | 318 | hypothetical protein; Validated | 99.93 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 99.92 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 99.92 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 99.92 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 99.92 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.92 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 99.92 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 99.91 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.88 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.87 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.86 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 99.84 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.82 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.82 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.78 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 99.77 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.76 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.73 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.73 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.73 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.73 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.72 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.71 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.7 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.69 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.67 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 99.67 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.67 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.66 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.66 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.65 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.64 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.64 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.63 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.63 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.61 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.61 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 99.6 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 99.6 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.59 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.58 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.57 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.57 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.56 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.56 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.56 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.55 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.55 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.54 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.53 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 99.53 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.53 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.52 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 99.51 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.51 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.5 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.49 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.48 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.47 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.47 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.46 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.46 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.45 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.45 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.45 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.45 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.45 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.44 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.44 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.44 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.43 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.42 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.42 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.42 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 99.42 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.41 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.41 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.4 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.4 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 99.39 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.38 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.38 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 99.38 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.38 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.37 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.36 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.36 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.36 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.36 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.35 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.35 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.34 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.34 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.32 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.31 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.31 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.29 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 99.29 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.28 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.27 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.27 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 99.25 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 99.21 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.21 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 99.21 | |
| PF12169 | 143 | DNA_pol3_gamma3: DNA polymerase III subunits gamma | 99.19 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 99.18 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.18 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.18 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.17 | |
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 99.16 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 99.15 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.14 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.13 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.12 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.12 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.12 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.11 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 99.11 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.1 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.1 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 99.09 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.09 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.09 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 99.08 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.06 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.06 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.05 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.04 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.04 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 98.99 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.97 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.97 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 98.94 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.94 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 98.92 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 98.92 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 98.91 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 98.9 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.9 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.9 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 98.86 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 98.85 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.84 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.84 | |
| PHA02244 | 383 | ATPase-like protein | 98.83 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.83 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 98.81 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.81 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 98.8 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.75 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 98.74 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.73 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.73 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 98.71 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.68 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.67 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.67 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.66 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.65 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.59 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.55 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.53 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.53 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.52 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.48 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.46 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 98.44 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 98.37 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 98.37 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.35 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.34 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 98.33 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.32 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 98.3 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.25 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.25 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.18 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.17 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 98.16 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 98.15 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.15 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.14 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.1 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 98.08 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.07 | |
| PF14840 | 125 | DNA_pol3_delt_C: Processivity clamp loader gamma c | 98.04 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 97.98 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 97.96 | |
| PRK08181 | 269 | transposase; Validated | 97.95 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 97.91 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 97.91 | |
| PRK06526 | 254 | transposase; Provisional | 97.9 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 97.89 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.88 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 97.82 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.79 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 97.77 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 97.74 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.74 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 97.7 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 97.69 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 97.68 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 97.68 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.64 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.61 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.56 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.56 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 97.54 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.49 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 97.49 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 97.46 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 97.41 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.38 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.36 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.33 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.33 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 97.32 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 97.25 | |
| PHA02774 | 613 | E1; Provisional | 97.24 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 97.21 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 97.2 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 97.15 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.13 | |
| PHA02624 | 647 | large T antigen; Provisional | 97.12 | |
| PTZ00202 | 550 | tuzin; Provisional | 97.07 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 97.06 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.98 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 96.98 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 96.97 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 96.96 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 96.93 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.88 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.84 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 96.81 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 96.71 | |
| PRK13695 | 174 | putative NTPase; Provisional | 96.7 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.69 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.65 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.65 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.61 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 96.6 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.6 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.59 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 96.58 | |
| COG2842 | 297 | Uncharacterized ATPase, putative transposase [Gene | 96.54 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 96.52 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.48 | |
| PF08542 | 89 | Rep_fac_C: Replication factor C C-terminal domain; | 96.42 | |
| PF05272 | 198 | VirE: Virulence-associated protein E; InterPro: IP | 96.4 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.4 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.34 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.33 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.27 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 96.19 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.15 | |
| KOG1808 | 1856 | consensus AAA ATPase containing von Willebrand fac | 96.1 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 96.05 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.01 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 95.98 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 95.97 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.97 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 95.95 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 95.95 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 95.95 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 95.94 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 95.94 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 95.88 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 95.83 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 95.81 | |
| TIGR01613 | 304 | primase_Cterm phage/plasmid primase, P4 family, C- | 95.79 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.76 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 95.73 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.71 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 95.68 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 95.68 | |
| PF13479 | 213 | AAA_24: AAA domain | 95.65 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 95.63 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 95.61 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 95.58 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 95.54 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 95.54 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 95.46 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 95.45 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 95.44 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.43 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 95.43 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.42 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.38 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 95.37 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 95.35 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 95.35 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 95.35 | |
| PF13337 | 457 | Lon_2: Putative ATP-dependent Lon protease | 95.34 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 95.32 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 95.26 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 95.22 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 95.22 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 95.17 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 95.15 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 95.13 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 95.13 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 95.1 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 95.0 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 95.0 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 94.97 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 94.96 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 94.92 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 94.89 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 94.89 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 94.84 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.84 | |
| PF10923 | 416 | DUF2791: P-loop Domain of unknown function (DUF279 | 94.8 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 94.79 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 94.77 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 94.77 | |
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 94.76 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 94.69 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 94.67 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 94.65 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 94.6 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 94.58 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 94.57 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 94.56 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 94.55 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 94.54 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 94.54 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 94.53 | |
| PHA00350 | 399 | putative assembly protein | 94.53 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.51 | |
| PRK04220 | 301 | 2-phosphoglycerate kinase; Provisional | 94.49 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 94.48 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 94.48 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 94.46 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 94.44 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 94.43 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 94.42 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.4 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 94.4 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 94.37 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.35 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 94.32 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 94.3 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 94.2 | |
| COG0324 | 308 | MiaA tRNA delta(2)-isopentenylpyrophosphate transf | 94.2 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 94.17 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 94.16 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 94.13 | |
| PF00519 | 432 | PPV_E1_C: Papillomavirus helicase; InterPro: IPR00 | 94.12 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 94.12 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 94.11 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 94.07 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 94.07 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 94.06 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 94.06 | |
| PRK03839 | 180 | putative kinase; Provisional | 94.05 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 94.03 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 94.03 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 94.02 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 94.02 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 94.01 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 93.98 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 93.94 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 93.94 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 93.93 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 93.9 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 93.9 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 93.89 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 93.82 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 93.78 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 93.77 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 93.76 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 93.71 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 93.7 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 93.67 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 93.64 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 93.62 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 93.59 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 93.55 | |
| TIGR02653 | 675 | Lon_rel_chp conserved hypothetical protein. This m | 93.55 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 93.54 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 93.51 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 93.48 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.47 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 93.45 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 93.44 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 93.38 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 93.36 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 93.29 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 93.23 | |
| PF13654 | 509 | AAA_32: AAA domain; PDB: 3K1J_B. | 93.21 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 93.2 | |
| PLN02772 | 398 | guanylate kinase | 93.17 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 93.17 | |
| PLN02674 | 244 | adenylate kinase | 93.16 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 93.13 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 93.13 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 93.13 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 93.08 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 93.02 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 92.98 | |
| PRK12337 | 475 | 2-phosphoglycerate kinase; Provisional | 92.97 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 92.94 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 92.94 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 92.9 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 92.9 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 92.88 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 92.86 | |
| TIGR00455 | 184 | apsK adenylylsulfate kinase (apsK). Important resi | 92.86 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 92.84 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 92.84 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 92.82 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 92.81 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 92.8 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 92.78 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 92.72 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 92.72 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 92.7 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 92.66 | |
| TIGR01663 | 526 | PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | 92.63 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 92.62 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 92.62 | |
| PHA03311 | 828 | helicase-primase subunit BBLF4; Provisional | 92.61 | |
| PRK06217 | 183 | hypothetical protein; Validated | 92.61 | |
| PF02689 | 818 | Herpes_Helicase: Helicase; InterPro: IPR003840 Thi | 92.6 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 92.55 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 92.48 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 92.44 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 92.44 |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=588.68 Aligned_cols=496 Identities=31% Similarity=0.509 Sum_probs=400.6
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC--CCCCCCCcccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD--QTKPCGYCREC 534 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e--~~~PCg~C~sC 534 (1268)
.+.+|.+||||++|++++||++++..|.+++..++++|+|||+||+|+|||++|++||+.|+|.... ...|||.|..|
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999997543 24799999999
Q ss_pred cccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
+.+..|.+.+++++++....+++.|+++++.+.+.+ +++++|||||||+|+|+.+++++||++||+++.+++|||+|+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p--~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP--VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh--hcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 999999999999999887788999999999988765 678999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHH
Q 000818 615 DIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694 (1268)
Q Consensus 615 ~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~ 694 (1268)
++.+++++|++||+.++|.+++.+++..+|.+++.++++.++++++.+|+..++|++|.|+++|++++++.+.||.++|+
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~ 239 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVW 239 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh---------------cccC
Q 000818 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI---------------GGRS 759 (1268)
Q Consensus 695 eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~---------------~~r~ 759 (1268)
++++...++.+|+|++++..++...++..+++|+..|++|+.++.+|..+|||++..+... ..+.
T Consensus 240 ~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~ 319 (620)
T PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKL 319 (620)
T ss_pred HHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776531 1233
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcCC
Q 000818 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMS 839 (1268)
Q Consensus 760 ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1268)
+..++..+|.++++.|.+++++||.+.++++|||++|++|+..+............ .+.... . ....+.+
T Consensus 320 A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~~~~~~~~~~~~~~--~~~~~~---~-----~~~~~~~ 389 (620)
T PRK14948 320 AKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIANASAPA--NPTPAP---N-----PSPPPAP 389 (620)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhccCcccccccccccc--ccCCcc---c-----cCccccc
Confidence 35578889999999999999999999999999999999998754422211111000 000000 0 0000000
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHH
Q 000818 840 GPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWA 919 (1268)
Q Consensus 840 ~~~~~p~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~ 919 (1268)
.+...|.....+.....+... ....+. . +. .+...+....+ ... ......+|+++|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~--~~---~~~~~~~~~~~------~~~--~~~~~~~l~~~w~ 446 (620)
T PRK14948 390 IQPSAPKTKQAATTPSPPPAK--ASPPIP--------V--PA---EPTEPSPTPPA------NAA--NAPPSLNLEELWQ 446 (620)
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCC--------C--CC---CCCCCCCCCCC------CCC--CCccccCHHHHHH
Confidence 000000000000000000000 000000 0 00 00000000000 000 1123458999999
Q ss_pred HHHHHhcchHHHHHHHHccceeeeecccceEEEEEEecCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEcc
Q 000818 920 QCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLP 992 (1268)
Q Consensus 920 ~vle~~~s~~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~ae~~~~~I~~a~e~vlg~~Vev~i~~~~ 992 (1268)
+||++|+++++|+||+|||+|++++++ +|+|+| ++.+..++++.+..|++||++|||++|+|.+....
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (620)
T PRK14948 447 QILAKLELPSTRMLLSQQAELVSLDSN----RAVIAV-SPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQS 514 (620)
T ss_pred HHHHhCCChhHHHHHHhhhheecccCC----EEEEEe-CHHHHHHHHHhHHHHHHHHHHHhCCCeEEEEEecC
Confidence 999999999999999999999999986 899999 67777999999999999999999999999998753
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-58 Score=551.78 Aligned_cols=486 Identities=22% Similarity=0.356 Sum_probs=386.0
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s 539 (1268)
+|++||||++|+|||||+++++.|++++..++++|+|||+||+|||||++|++||+.++|.......||+.|.+|..+..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 58999999999999999999999999999999999999999999999999999999999987666789999999999875
Q ss_pred --CCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 540 --GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 540 --G~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
+.+.+|+++++++..++++++++++.+.+.+ +.+++|||||||+|+|+.+++|+||++||++|.+++|||+|++++
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P--~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAP--AQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhh--hcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 4578999999998889999999999998765 679999999999999999999999999999999999999999999
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCccCHHHHHH
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNE 695 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll--gk~IT~edV~e 695 (1268)
+++++|+|||++|+|.+++.+++..||.++++++|+.++++++.+|+..++|++|+++++|++++.+ ++.||.++|.+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~ 239 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALG 239 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-----------------hccc
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-----------------IGGR 758 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-----------------~~~r 758 (1268)
+++...++.+|++++++..+|...++..+++|+..|.+|..|+..|..+|||++..+.. ....
T Consensus 240 llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l~~ 319 (584)
T PRK14952 240 LLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERMRE 319 (584)
T ss_pred HHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877652 1123
Q ss_pred CCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcC
Q 000818 759 SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRM 838 (1268)
Q Consensus 759 ~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1268)
+...++.+.|.++++++.+...+++.+.+++++||+++++||. |...........| ...++..... ..+.
T Consensus 320 qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~-~~~~~~~~~~~~~--~~~le~~~~~-------~~~~ 389 (584)
T PRK14952 320 QAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL-PSASDAESALLQR--VERIETRLDM-------SIPA 389 (584)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc-ccccccHHHHHHH--HHHHHHHHhh-------cccc
Confidence 3455788889999999999998999999999999999999996 3322111111111 0000100000 0000
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHH
Q 000818 839 SGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIW 918 (1268)
Q Consensus 839 ~~~~~~p~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW 918 (1268)
......| .+++.+.+... .+. .. ..+.+..+.. +.. ...-.+...+.+.|
T Consensus 390 ~~~~~~~----~~~~~~~~~~~-~~~-~~-----------~~~~~~~~~~---~~~----------~~~~~~~~~~~~~W 439 (584)
T PRK14952 390 NLLHNAP----QAAPAPSAAAP-EPK-HQ-----------PAPEPRPVLA---PTP----------ASGEPNAAAVRSMW 439 (584)
T ss_pred cCCCCCC----CCCCCCCCCCC-CCC-CC-----------CCCCCCCCCC---Ccc----------cccchhHHHHHHHH
Confidence 0000000 00000000000 000 00 0000000000 000 00113456788999
Q ss_pred HHHHHHhcch--HHHHHHHHccceeeeecccceEEEEEEecCchhhhhHHH--hHHHHHHHHHHHhCCcEEEEEEEcc
Q 000818 919 AQCIERCHSK--TLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAER--FLSSITNSIETVLRRNVEVRIILLP 992 (1268)
Q Consensus 919 ~~vle~~~s~--~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~ae~--~~~~I~~a~e~vlg~~Vev~i~~~~ 992 (1268)
.+|++.+... +++.+| ++|+++.+.++ +++|.|.+..++.+.++ ....|+++|.+++|.+++|+.....
T Consensus 440 ~~~l~~~~~~~~~~~a~l-~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~v~~~~~~ 512 (584)
T PRK14952 440 STVRDKVRQRSRTTEVML-AGATVRALEGN----TLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGK 512 (584)
T ss_pred HHHHHHHhhcchhHHHHH-hcCEeeeccCC----EEEEEeCcHHHHHHHhCchhHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 9999998743 344455 77999988865 79999998877644432 3778999999999999999998754
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=546.20 Aligned_cols=501 Identities=28% Similarity=0.450 Sum_probs=389.5
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+||||||+|+|||++|++||++++|.......||+.|..|..
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+.+++++++++..++++|+++++.+.+.| +.+++|||||||+|+|+..++|+|+++||+||.+++|||+|+++
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p--~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP--SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc--ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 9999999999999998889999999999998766 67999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++|+++|+|||++|.|.+++.+++..+|..+++++|+.++++++.+|+..++||+|+|+++|+++..+ ++.||.++|.+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~ 239 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAE 239 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 56899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh---------------hcccCC
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------------IGGRSL 760 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~---------------~~~r~l 760 (1268)
++|.+..+.+|+++++++.+|...++..+.+|+..|.++..++..|..+||+++..+.. ...+++
T Consensus 240 llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~~A 319 (576)
T PRK14965 240 LLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQA 319 (576)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877653 112334
Q ss_pred CHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcCCC
Q 000818 761 TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSG 840 (1268)
Q Consensus 761 s~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1268)
..++.+.|.+++++|.+++++||.+.++++.||++|++|+.+. +.........+ ...++........ .....+.+.
T Consensus 320 ~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~~-~~~~~~~~~~~--~~~l~~~~~~~~~-~~~~~~~~~ 395 (576)
T PRK14965 320 AAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLA-PGAPVSELLDR--LEALERGAPAPPS-AAWGAPTPA 395 (576)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhcc-CCCCHHHHHHH--HHHHHHhhccccc-cccccCCCc
Confidence 5578889999999999999999999999999999999999852 22111111100 0000000000000 000000000
Q ss_pred CCCCCC-CCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHH
Q 000818 841 PQYMPQ-NAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWA 919 (1268)
Q Consensus 841 ~~~~p~-~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~ 919 (1268)
+..+|. ..+.|++.+.+ . .+.. ..|.+.+... ..+.+ .. ......+...+.+.|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~-~--~~~~-------------~~~~~~~~~~-----~~~~~--~~-~~~~~~~~~~~~~~W~ 451 (576)
T PRK14965 396 APAAPPPAAAPPVPPAAP-A--RPAA-------------ARPAPAPAPP-----AAAAP--PA-RSADPAAAASAGDRWR 451 (576)
T ss_pred cccccccccCCCCCCCCC-C--cccc-------------cccccCCccc-----ccCCc--cc-ccccccchhhhhhhHH
Confidence 000000 00000000000 0 0000 0000000000 00000 00 0000113345667899
Q ss_pred HHHHHhc--chHHHHHHHHccceeeeecccceEEEEEEecCchhhh---hHHHhHHHHHHHHHHHhCCcEEEEEEEcc
Q 000818 920 QCIERCH--SKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKS---RAERFLSSITNSIETVLRRNVEVRIILLP 992 (1268)
Q Consensus 920 ~vle~~~--s~~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~---~ae~~~~~I~~a~e~vlg~~Vev~i~~~~ 992 (1268)
++++.+. .+.++++| ++|+++.+..+ .++|.|....+.. ..++....|++++.+++|..++|.+....
T Consensus 452 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 524 (576)
T PRK14965 452 AFVAFVKGKKPALGASL-EQGSPLGVSAG----LLEIGFPEGSFELSAMQDPDSRAELKALAEQFFGRPTRLRITVLA 524 (576)
T ss_pred HHHHHHHhccHHHHHHH-hcCceeeecCC----eEEEEeCchHHHHHHhcChHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 9999984 34455544 67999999875 5888998763422 23566788999999999999999999754
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=545.22 Aligned_cols=490 Identities=29% Similarity=0.498 Sum_probs=391.5
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+||+||+++++.|.+++..++++|+||||||+|||||++|++||++++|..+..+.||+.|..|..
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.+++|++++++++.+++.|+++++.+.+.| ..+++|||||||+|+|+..++|+|+++||+||.+++|||+|+.+
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p--~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP--SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc--ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 9999999999999998899999999999998765 68999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++++++|+|||+.+.|.+++..++..||..+++++|+.++++++.+|+..++|++|+|+++|+++..+ ++.||.++|.+
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~ 239 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALE 239 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999776 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------------hcccCCC
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--------------IGGRSLT 761 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~--------------~~~r~ls 761 (1268)
++|.+..+.+++|++++..+|...++..+.+|+..|.++..++..|..+||+++..+.. ...+++.
T Consensus 240 vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~ 319 (559)
T PRK05563 240 VTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSE 319 (559)
T ss_pred HhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877653 1123345
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCC----CCCccCCCccccCCCCCCCCCCCcchhhhhhhc
Q 000818 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS----PDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKR 837 (1268)
Q Consensus 762 ~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1268)
.++.+.|.+++..|.+++.++|.+.++++.||+++++||.... ..........| ...++.. ....++
T Consensus 320 ~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~~~~~~~~~~~~~~~~~~--~~~l~~~-------~~~~~~ 390 (559)
T PRK05563 320 KLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDTELEVLLQR--VEQLEQE-------LKQLKA 390 (559)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhccCCccccCCHHHHHHH--HHHHHHH-------HHhccc
Confidence 6788899999999999999999999999999999999998422 11111001000 0000000 000000
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHH
Q 000818 838 MSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEI 917 (1268)
Q Consensus 838 ~~~~~~~p~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~i 917 (1268)
. +. +..++. .+.... .........++ .......++.. + ...+...+...
T Consensus 391 ~--~~--~~~~~~-~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~----~------------~~~~~~~~~~~ 439 (559)
T PRK05563 391 Q--PV--GVAPEQ-KEKKKE----KKKNKKKKYKV------PRGKIYKVLKE----A------------TRQDLELLKNV 439 (559)
T ss_pred C--Cc--cccccc-cccccc----ccccccccccC------Ccchhhhhhhh----c------------cHHHHHHHHHH
Confidence 0 00 000000 000000 00000000000 00000000000 0 11244567788
Q ss_pred HHHHHHHhcch--HHHHHHHHccceeeeecccceEEEEEEecCchhhhhH---HHhHHHHHHHHHHHhCCcEEEEEEEcc
Q 000818 918 WAQCIERCHSK--TLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRA---ERFLSSITNSIETVLRRNVEVRIILLP 992 (1268)
Q Consensus 918 W~~vle~~~s~--~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~a---e~~~~~I~~a~e~vlg~~Vev~i~~~~ 992 (1268)
|..||+.+... +++.+| ..|+++...++ +++|+|.+.....+. +.....|++.+.+++|.+++|.+....
T Consensus 440 w~~~l~~~~~~~~~~~~~l-~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (559)
T PRK05563 440 WGEILESLKAQRKSLRALL-VNSEPVAASED----TVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPED 514 (559)
T ss_pred HHHHHHHHhcccHHHHHHH-hcCeEeeccCC----EEEEEeCcHHHHHHHHhChHHHHHHHHHHHHHhCCCeEEEEEEhh
Confidence 99999988744 466666 55899888875 799999987644222 233388999999999999999998764
Q ss_pred C
Q 000818 993 D 993 (1268)
Q Consensus 993 ~ 993 (1268)
+
T Consensus 515 ~ 515 (559)
T PRK05563 515 E 515 (559)
T ss_pred h
Confidence 4
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=534.45 Aligned_cols=442 Identities=26% Similarity=0.423 Sum_probs=383.7
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|||||++|++||+.++|.......|||.|..|..
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999988878899999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+++++++++++..+++++|++++.+.+.+ ..+++|||||||+|+|+..++|+||++||+||.+++|||+|+++
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p--~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP--TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc--ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 9999999999999998899999999999998866 57899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~e 695 (1268)
.+++++|+|||++|+|.+++..++..+|..++.++|+.++++++.+|+..++|++|+|+++|++++.++ +.||.++|.+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~ 239 (509)
T PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKT 239 (509)
T ss_pred HhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998774 6899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh----------cccCCCHHhH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAEL 765 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~----------~~r~ls~~sl 765 (1268)
++|.+.++.+|+|++++..+|...++..+++|+..|+++..++..|+.++++++..+... .......++.
T Consensus 240 ~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (509)
T PRK14958 240 MLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDR 319 (509)
T ss_pred HHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999987655431 1112233566
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcCCCCCCCC
Q 000818 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP 845 (1268)
Q Consensus 766 e~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 845 (1268)
+.|..+++++.....+|+.+.+++++||++||+|+....... . . .+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---------------~----------~-~~~~------ 367 (509)
T PRK14958 320 EDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPSAA---------------N----------A-IPET------ 367 (509)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCCCcc---------------c----------c-cCCC------
Confidence 677788899999999999999999999999999997422100 0 0 0000
Q ss_pred CCCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHHHHHHHh
Q 000818 846 QNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERC 925 (1268)
Q Consensus 846 ~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~~vle~~ 925 (1268)
.+.... ..|.+ . + -.+.|.++++.+
T Consensus 368 ------~~~~~~---------------------~~~~~----------~-~-----------------~~~~W~~lv~~L 392 (509)
T PRK14958 368 ------ESKEAV---------------------VTPTP----------K-S-----------------SETSWPQLLSQL 392 (509)
T ss_pred ------CCCccC---------------------CCCCC----------C-C-----------------ccchHHHHHHHc
Confidence 000000 00000 0 0 012599999999
Q ss_pred cchHHHHHHHHccceeeeecccceEEEEEEecCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEc
Q 000818 926 HSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILL 991 (1268)
Q Consensus 926 ~s~~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~ae~~~~~I~~a~e~vlg~~Vev~i~~~ 991 (1268)
....+-..|.+|+.+.++.++ .+++.+.....--..++....|+.||.+.||..|+|.|.+-
T Consensus 393 ~l~Gl~~qLA~n~~l~~~~~~----~i~L~L~~~~~~L~~~~~~~~L~~ALs~~~G~~i~L~I~~g 454 (509)
T PRK14958 393 KLTGATLALAQQCSLKELTDN----RLYLMLNPKQKPLLQQKHIERISEALSEHFNRTITVKIDIS 454 (509)
T ss_pred CCchHHHHHHhhhhhhcccCC----EEEEEEChhhhhhcCHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 988999999999999998865 47888876443334677888999999999999999999974
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=534.20 Aligned_cols=344 Identities=36% Similarity=0.626 Sum_probs=325.7
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|++|++||||++|+|+|||++++++|.+++..++++|+|||+||+|||||++||+||++|||.......||+.|..|..
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|...|++|||+++++||++||+|++.+.+.| ..++||||||||+|||+..++|+|||+||+||.+|+|||+|+++
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P--~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP--SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCC--ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 9999999999999999999999999999999877 68999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~e 695 (1268)
+++++||+||||+|+|++++.++|..+|..++.+|++.++++||..|++.++|++|+++++|||+..++ +.||.+.|++
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~ 239 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRD 239 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998886 5899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------------hcccCCC
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--------------IGGRSLT 761 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~--------------~~~r~ls 761 (1268)
++|.++.+.++.++++++.+|...++..+++++..|.+|..++..|+.++++++..+.. .......
T Consensus 240 ~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 319 (515)
T COG2812 240 MLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELAS 319 (515)
T ss_pred HhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996554432 0112234
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 762 ~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
.+....|.++++++......++.+.++++++|+++++|+..
T Consensus 320 ~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~ 360 (515)
T COG2812 320 QISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEA 360 (515)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence 46677788899999999999999999999999999999874
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-54 Score=531.06 Aligned_cols=341 Identities=30% Similarity=0.493 Sum_probs=318.2
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
.+|++||||++|+|||||+++++.|+++|..+++.|+|||+||+|+|||++|++||+.|+|.......||+.|.+|+.+.
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998765667999999999998
Q ss_pred cC--CCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 539 SG--KSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 539 sG--~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
.+ .+.+|++|++.+..++++||++++.+.+.+ ..+++|||||||+|+|+..++|+|||+||+++.+++|||+|++.
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p--~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAP--AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhch--hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 88 688999999988889999999999887765 57899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCccCHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVN 694 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll--gk~IT~edV~ 694 (1268)
++|+++|+|||++|.|.+++.+++..||.+++.++|+.++++++.+|+..++||+|+++++|++|+.+ .+.||.++|.
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~ 240 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAV 240 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 3689999999
Q ss_pred HHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-----------------hcc
Q 000818 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-----------------IGG 757 (1268)
Q Consensus 695 eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-----------------~~~ 757 (1268)
++++...+..++++++++..+|...++..+++|+..|.++..|+..|.++||||+..+.. ...
T Consensus 241 allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L~ 320 (824)
T PRK07764 241 ALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRMR 320 (824)
T ss_pred HHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876542 113
Q ss_pred cCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 758 r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
.++..|+..+|.+++++|.++...++.+.++++.||+++++|+.
T Consensus 321 ~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 321 AQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 44456788889999999999999999999999999999999975
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-54 Score=517.96 Aligned_cols=345 Identities=31% Similarity=0.551 Sum_probs=320.6
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC-----CCCCCCCc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD-----QTKPCGYC 531 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e-----~~~PCg~C 531 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.|+|..+. ...|||.|
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 4789999999999999999999999999999999999999999999999999999999999997532 34799999
Q ss_pred ccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEE
Q 000818 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611 (1268)
Q Consensus 532 ~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfIL 611 (1268)
..|..+..|.+.+|+++|+++..++++|+++++.+.+.+ ..+++|||||||+|+|+..++|+||++||++|.+++|||
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p--~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL 159 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP--VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVL 159 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc--ccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEE
Confidence 999999999999999999998899999999999998776 568999999999999999999999999999999999999
Q ss_pred EeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCH
Q 000818 612 ITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITS 690 (1268)
Q Consensus 612 aTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~ 690 (1268)
+|+++.+++++|+|||++|+|.+++.+++..||.+++.++|+.++++++.+|+..++|++|+++++|+++..++ +.||.
T Consensus 160 ~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~ 239 (618)
T PRK14951 160 ATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQE 239 (618)
T ss_pred EECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987764 67999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhc-------------c
Q 000818 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG-------------G 757 (1268)
Q Consensus 691 edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~-------------~ 757 (1268)
++|.++++...++.+|+|++++..+|...++..+++|...|+++..|+..|..++++++..+.... .
T Consensus 240 ~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (618)
T PRK14951 240 AAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVA 319 (618)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987665411 1
Q ss_pred cCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 758 r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
.....++.+.|..+++++......|+.+.++++.||++||+|+.+.
T Consensus 320 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~~ 365 (618)
T PRK14951 320 RLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFK 365 (618)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCC
Confidence 1122346677888999999999999999999999999999998753
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=516.42 Aligned_cols=515 Identities=28% Similarity=0.436 Sum_probs=393.0
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccC-CCCCCCCCcccccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT-DQTKPCGYCRECND 536 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~-e~~~PCg~C~sC~~ 536 (1268)
++.|++||||++|+|||||+++++.|++++..++++|+||||||+|+|||++|++||+.++|... ....||+.|..|..
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999765 45689999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.+.+++++++....++++++++++.+.+.+ +++.++||||||+|+|+.+++++|+++||+++.+++|||++++.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p--~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP--ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc--ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 9999999999999877788999999999888765 67899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++++++|++||+++.|.+++..++..+|.+++.++|+.++++++.+|+..++||+|.++++|+++..+ ++.||.++|.+
T Consensus 161 ~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ 240 (585)
T PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240 (585)
T ss_pred hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 56899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------------hcccCCC
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--------------IGGRSLT 761 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~--------------~~~r~ls 761 (1268)
+++...++.+|+|+++++.+|...++..+++|+..|.++..|+..|.++||+++..+.. ...++++
T Consensus 241 ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~ 320 (585)
T PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQ 320 (585)
T ss_pred HhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999877643 2234556
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccc-cCCCCCCCCCCCcchhhhhhhcCCC
Q 000818 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRR-QSSRTTEEDPSSTSREAVVYKRMSG 840 (1268)
Q Consensus 762 ~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1268)
.|+.+.|.+++..|.++|+++|++.++++.||++|+++|.-+.+.......... .........+...... .+..+.+.
T Consensus 321 ~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 399 (585)
T PRK14950 321 IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKA-AAAANIPP 399 (585)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcccccccccccCCcCccCCCCCCCCcccc-cccccCCc
Confidence 788899999999999999999999888999999999998743221111111100 0000010000000000 00000000
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCcccccccccCC--CCCCC-CCCcccccccccccccCCccccccccccCChhHHHHH
Q 000818 841 PQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGH--NSYSK-PSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEI 917 (1268)
Q Consensus 841 ~~~~p~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~i 917 (1268)
....+....++++.+.++....++.....+..... ..... ....+...+.+..++.. .......|+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 470 (585)
T PRK14950 400 KEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIA---------DGDVLEQLEAI 470 (585)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCcCCCCCCCCCCcccccCCCC---------cchhHHHHHHH
Confidence 00000000111111111111111110000000000 00000 00000000000011110 01234578999
Q ss_pred HHHHHHHhcchHH--HHHHHHccceeeeecccceEEEEEEecCchhhhhH--HHhHHHHHHHHHHHhCCcEEEEE
Q 000818 918 WAQCIERCHSKTL--KQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRA--ERFLSSITNSIETVLRRNVEVRI 988 (1268)
Q Consensus 918 W~~vle~~~s~~l--r~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~a--e~~~~~I~~a~e~vlg~~Vev~i 988 (1268)
|.+|++.+...+. +.||...++.+.+.++ ++.|.|.+..++.+- +.....|++.+..++|.++.|+.
T Consensus 471 w~~~~~~~~~~~~~~~~~~~~~a~p~~~~~~----~l~l~~~~~~~~~~~~~~~~r~~i~~~l~~~~g~~~~v~c 541 (585)
T PRK14950 471 WKQILRDVPPRSPAVQALLSSGVRPVSVEKN----TLTLSFKSKFHKDKIEEPENRKITEELLSNFVGKTCAVRC 541 (585)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCeeeeecCC----EEEEecCcHHHHHHhhchHHHHHHHHHHHHHhCCceEEEE
Confidence 9999998875544 5666666899999876 899999999888554 45888999999999999999999
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=497.52 Aligned_cols=480 Identities=28% Similarity=0.462 Sum_probs=379.9
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
-+|++||||++|+||+||++++..|.+++..++++|+||||||+|||||++|++||+.++|..+ ...||+.|..|..+.
T Consensus 2 ~~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~-~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 2 SALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE-DPKPCGECESCLAVR 80 (504)
T ss_pred chHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCC-CCCCCCcChhhHHHh
Confidence 3588999999999999999999999999999999999999999999999999999999999765 357999999999999
Q ss_pred cCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCC
Q 000818 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 539 sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eK 618 (1268)
.+.+.+|+++++.+..+++.++++.+.+...+ +.++++||||||+|.++..++++|+++|++++.+++||++|+.+.+
T Consensus 81 ~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p--~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAP--LRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhcc--ccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 99999999999988888999999988888755 6789999999999999999999999999999999999999999999
Q ss_pred cchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhc
Q 000818 619 VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698 (1268)
Q Consensus 619 L~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG 698 (1268)
++++|.+||+.|.|.+++.+++..||.++++++|+.++++++.+|+..++||+|.|+++|+++..+++.||.++|.++++
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~ 238 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALG 238 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred ccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHH
Q 000818 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEA 778 (1268)
Q Consensus 699 ~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEa 778 (1268)
...++++|+|+++++.++...|+..+++|+..|++|..|+..|.++|+.++..+.............+.+.++++.|.+.
T Consensus 239 ~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~~~ 318 (504)
T PRK14963 239 LPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALDEQ 318 (504)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988865332222234556889999999999
Q ss_pred HHHhhccCCchHHHHHHHHHccCCCC-------------CCCccCCCccccCCCCCCCCCCCcchhhhhhhcCCCCCCCC
Q 000818 779 EKQLRLSSERCTWFTATLLQLGSMHS-------------PDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP 845 (1268)
Q Consensus 779 DkqLK~S~d~rl~LE~aLL~L~~lp~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 845 (1268)
++++..+.+ +..||++|+.||. |. ++........| ...++.....+ .+ .
T Consensus 319 ~~~~~~~~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~le~~~~~~---------~~-----~ 380 (504)
T PRK14963 319 MERFARRSD-ALSLELALLHALL-ALGGAPSEGVAAVAPPAPAPADLTQR--LNRLEKEVRSL---------RS-----A 380 (504)
T ss_pred HHHHHhccc-hhHHHHHHHHHHh-hhccCCccccccccccCCCHHHHHHH--HHHHHHHhccC---------CC-----C
Confidence 999887776 5679999999986 33 11111111111 11111111100 00 0
Q ss_pred CCCCCCCCc-CCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHHHHHHH
Q 000818 846 QNAVSPASL-REPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIER 924 (1268)
Q Consensus 846 ~~s~~p~~~-~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~~vle~ 924 (1268)
.....+++. +.+.....+. ....+.+..+...+.+.+ ..++...+..-|..|+..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~w~~~~~~ 436 (504)
T PRK14963 381 PTAAATAAGAPLPDFDPRPR------------GPPAPEPARSAEAPPLVA------------PAAAPAGLALRWRDVLAA 436 (504)
T ss_pred ccccCCCCCCCccccCcccC------------CCCCccccccccCCCccC------------ChhHHHHHHHHHHHHHHH
Confidence 000000000 0000000000 000000000000000001 124567889999999988
Q ss_pred hcchHHHHHHHHccceeeeecccceEEEEEEecCchhh--hhHHHhHHHHHHHHHHHhCCcEEEEEEEc
Q 000818 925 CHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIK--SRAERFLSSITNSIETVLRRNVEVRIILL 991 (1268)
Q Consensus 925 ~~s~~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~--~~ae~~~~~I~~a~e~vlg~~Vev~i~~~ 991 (1268)
+ ++.++++|.+. .. ++.. | .++|.|.+.... ...++.+..|.+.+++++| .|+|++++.
T Consensus 437 ~-~~~~~~~~~~~-~~-~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 497 (504)
T PRK14963 437 L-KMQLRAFLREA-RP-HVEE--G--YVSLTFPERASFHYKQAQKKLAELAALVREVFG-PETVELILP 497 (504)
T ss_pred h-hHHHHHHHHhh-cc-cCCC--C--eEEEEecCccchhhhhhHHHHHHHHHHHHHHhC-CeEEEEEec
Confidence 6 57799999885 33 4443 3 699999987332 4456788999999999999 999988864
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-52 Score=502.18 Aligned_cols=346 Identities=30% Similarity=0.555 Sum_probs=323.2
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC--------CCCCC
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD--------QTKPC 528 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e--------~~~PC 528 (1268)
.+.++++||||++|++||||+++++.|++++..++++|+|||+||+|+|||++|++||+.|+|+... ...||
T Consensus 2 ~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999996532 23699
Q ss_pred CCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEE
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVV 608 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vV 608 (1268)
|.|++|..+..|.+++|+++++.+..++++|+++++.+...| +++++|||||||+|.|+..++|+|+++||+||.+++
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P--~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv 159 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP--QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAI 159 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh--hcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeE
Confidence 999999999999999999999987788999999999998755 789999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----
Q 000818 609 FIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL---- 684 (1268)
Q Consensus 609 fILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll---- 684 (1268)
|||+|++.++|+++|++||++|.|.+++.+++..||.+++.++|+.|+++++++|+..++||+|.|+++|+++..+
T Consensus 160 ~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~ 239 (620)
T PRK14954 160 FIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGS 239 (620)
T ss_pred EEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred --CCccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------
Q 000818 685 --GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------- 754 (1268)
Q Consensus 685 --gk~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-------- 754 (1268)
++.||.++|.++++...++++|+|++++..++...++..+++|+..|++|+.|+..|+++||+++..+..
T Consensus 240 ~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~ 319 (620)
T PRK14954 240 EAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIER 319 (620)
T ss_pred ccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 3589999999999999999999999999999999999999999999999999999999999999876653
Q ss_pred ------hcccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCC
Q 000818 755 ------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804 (1268)
Q Consensus 755 ------~~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~ 804 (1268)
...+++..++.+.|.++++.|.++++.||+..++++.||++|++|+.+..
T Consensus 320 ~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~~ 375 (620)
T PRK14954 320 PESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVR 375 (620)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhccC
Confidence 11245566888999999999999999999988999999999999998653
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=499.56 Aligned_cols=355 Identities=26% Similarity=0.474 Sum_probs=320.3
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
.++.+|++||||++|+|||||++++..|.+++..++++|+|||+||+|||||++|++||+.++|..+....||+.|..|.
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998887889999999999
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
.+..+.+.+|++++++...+++.++++++.+.+.+ ..++++||||||+|+|+.+++|+||++||+||.+++||++|++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p--~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAP--MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhh--hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 99999999999999988889999999999988755 5688999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHH
Q 000818 616 IDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVN 694 (1268)
Q Consensus 616 ~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~ 694 (1268)
+++|+++|+|||++|.|.+++.+++..+|++++.++|+.++++|+.+|++.++|++|+|+++||+++.+ ++.||.+.|.
T Consensus 161 ~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~ 240 (484)
T PRK14956 161 FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIR 240 (484)
T ss_pred hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998655 4689999999
Q ss_pred HHhcccchHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh---------------hccc
Q 000818 695 ELVGVVSEEKLLELLELAMSSDT-AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------------IGGR 758 (1268)
Q Consensus 695 eLVG~v~eedifdLLdAIls~D~-~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~---------------~~~r 758 (1268)
+++|....+.+++++++++.+|. .+++..+.+|+..|+||..++..|..++|+++..+.. ....
T Consensus 241 ~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (484)
T PRK14956 241 KMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKS 320 (484)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHH
Confidence 99999999999999999999875 6899999999999999999999999999999866542 1123
Q ss_pred CCCHHhHHHHHHHHHHHH----HH-HHHhhccCCchHHHHHHHHHccCCCCCCCccCCCc
Q 000818 759 SLTEAELERLKHALKLLS----EA-EKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSS 813 (1268)
Q Consensus 759 ~ls~~sle~L~raL~iLs----Ea-DkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~ 813 (1268)
+...++...|.+++..|. .+ +.++|++.++|++||+++++||. |.++....+..
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~-~~~~~~~~~l~ 379 (484)
T PRK14956 321 DFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE-ELTYPSLAGLL 379 (484)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc-ccccCCHHHHH
Confidence 333456666777665543 33 45679999999999999999997 77665544443
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=502.64 Aligned_cols=345 Identities=31% Similarity=0.564 Sum_probs=323.5
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|.++|..++++|+|||+||+|+|||++|++||+.|+|.......||+.|..|..
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999988878899999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+.+++++++++..+++.|+++++.+.+.+ +.++++||||||+|+|+..++++||++||+++.+++|||+|+++
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P--~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP--TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhh--hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 9999999999999998899999999999987765 56899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~e 695 (1268)
.+++.+|++||+.|.|.+++.+++..||.+++.++|+.++++++.+|++.++||+|+++++|++++.++ +.|+.++|..
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~ 239 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQ 239 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998774 5899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------hcccCCCHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------IGGRSLTEA 763 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------~~~r~ls~~ 763 (1268)
+++...++.+|+|++++..+|...++..+++|+..|.++..++..|..++++++..+.. ........+
T Consensus 240 lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~ 319 (709)
T PRK08691 240 MIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTI 319 (709)
T ss_pred HHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999998766543 111223346
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
+.+.|..+++++......|+.+.++++.||++||+|+.+.
T Consensus 320 ~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~~ 359 (709)
T PRK08691 320 SGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFA 359 (709)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC
Confidence 7778999999999999999999999999999999998754
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-52 Score=501.13 Aligned_cols=344 Identities=31% Similarity=0.524 Sum_probs=320.2
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.|+|.......|||.|..|+.
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999987667789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+.+|+++++++..+++++|++++.+.+.+ ..+++|||||||+|+|+..++|+|||+||+||.+++|||+|+++
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p--~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP--ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhh--hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 9999999999999987788999999999998766 57899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++|+++|+|||+.|.|.+++.+++..+|.+++.++++.++++++.+|+..++|++|+|+++|+++..+ ++.||.++|.+
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~ 239 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSA 239 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh-------------cccCCCH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-------------GGRSLTE 762 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~-------------~~r~ls~ 762 (1268)
+++....+.++++++++..+|...++..+.+|+..|.++..++..|..+|+|++..+... .......
T Consensus 240 ~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la~~ 319 (647)
T PRK07994 240 MLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELART 319 (647)
T ss_pred HHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHHHh
Confidence 999998889999999999999999999999999999999999999999999998766431 1112234
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 763 ~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
++.+.|..+++++.++.+.|+...++++.||++||+|..+
T Consensus 320 ~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~ 359 (647)
T PRK07994 320 LPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359 (647)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 5677788899999999999999999999999999999775
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=495.81 Aligned_cols=349 Identities=31% Similarity=0.542 Sum_probs=326.3
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC-CCCCCCCcccc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD-QTKPCGYCREC 534 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e-~~~PCg~C~sC 534 (1268)
+++.+|++||||++|+||+||+++++.|.+++..++++|+||||||+|+|||++|++||+.++|..+. .+.+|+.|.+|
T Consensus 2 ~~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 2 ENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred chhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 46789999999999999999999999999999999999999999999999999999999999997643 46799999999
Q ss_pred cccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
..+..+.+++++++++.+..++++|+.+++.+...| +++++|||||||+|+|+..++++|+++||+||.+++|||+|+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P--~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPP--QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCc--ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 999999999999999988788999999999987655 789999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHH
Q 000818 615 DIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLV 693 (1268)
Q Consensus 615 ~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV 693 (1268)
...+|.++|+|||+++.|.+++.+++..||.+++.++|+.++++++++|+..++||+|.|+++|++++.+ ++.||.+.|
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V 239 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSV 239 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998766 556999999
Q ss_pred HHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------------hcccC
Q 000818 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--------------IGGRS 759 (1268)
Q Consensus 694 ~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~--------------~~~r~ 759 (1268)
.+++....++++|+|+++++.++...++..+++|+..|++|..|+..|+++||+++..+.. ...++
T Consensus 240 ~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~q 319 (614)
T PRK14971 240 IENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQ 319 (614)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986543 22345
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCC
Q 000818 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806 (1268)
Q Consensus 760 ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~ 806 (1268)
+..++.+.|.++++.|.++|+.||++.+++++||++|++||.+.++.
T Consensus 320 a~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~~~~ 366 (614)
T PRK14971 320 AQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQKG 366 (614)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCc
Confidence 56788899999999999999999999999999999999999976544
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=498.30 Aligned_cols=346 Identities=33% Similarity=0.577 Sum_probs=323.5
Q ss_pred hhhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCC-----CCCCC
Q 000818 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ-----TKPCG 529 (1268)
Q Consensus 455 ~~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~-----~~PCg 529 (1268)
...|++|.+||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.|+|..+.. ..||+
T Consensus 8 ~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 8 ATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999976433 26999
Q ss_pred CcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEE
Q 000818 530 YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVF 609 (1268)
Q Consensus 530 ~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVf 609 (1268)
.|..|..+..+.+.+|+++++++..++++||++++.+.+.+ +++++|||||||+|+|+..++|+||++||+||.+++|
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P--~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~f 165 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP--VSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKF 165 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhch--hcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEE
Confidence 99999999999999999999998889999999999998766 7899999999999999999999999999999999999
Q ss_pred EEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-Ccc
Q 000818 610 IFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRI 688 (1268)
Q Consensus 610 ILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~I 688 (1268)
||+|++.++++++|+|||++|+|.+++.+++..||.++++++++.++++++.+|+..++|++|.++++|++++.++ +.|
T Consensus 166 Il~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~I 245 (598)
T PRK09111 166 IFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEV 245 (598)
T ss_pred EEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987774 589
Q ss_pred CHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------------
Q 000818 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------------- 754 (1268)
Q Consensus 689 T~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-------------- 754 (1268)
|.++|.++++...++.+|+|+++++.+|...++..++.++..|++|+.|+.+|++++++++..+..
T Consensus 246 t~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~ 325 (598)
T PRK09111 246 TAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAER 325 (598)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876653
Q ss_pred -hcccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 755 -IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 755 -~~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
....+...+++..|.++++.|.+++..+|++.++++.+|++|++||..
T Consensus 326 ~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~ 374 (598)
T PRK09111 326 TRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYA 374 (598)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhh
Confidence 112333456888899999999999999999889999999999999874
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=491.80 Aligned_cols=345 Identities=30% Similarity=0.539 Sum_probs=319.4
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccC-----CCCCCCCCc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT-----DQTKPCGYC 531 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~-----e~~~PCg~C 531 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.|+|..+ ....|||.|
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 478999999999999999999999999999999999999999999999999999999999999543 234699999
Q ss_pred ccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEE
Q 000818 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611 (1268)
Q Consensus 532 ~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfIL 611 (1268)
..|..|..|.+.++++|++++.+++++|+++++.+.+.+ ..+++|||||||+|+|+..++|+|||+||+|+.+++|||
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P--~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FIL 159 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP--TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFIL 159 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch--hcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEE
Confidence 999999999999999999998899999999999998765 578999999999999999999999999999999999999
Q ss_pred EeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCH
Q 000818 612 ITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITS 690 (1268)
Q Consensus 612 aTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~ 690 (1268)
+|+++++|+++|+|||++|.|.+++.+++..+|.+++.++++.++++++.+|+..++|++|+++++++++..+ ++.||.
T Consensus 160 aTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~ 239 (700)
T PRK12323 160 ATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSE 239 (700)
T ss_pred EeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997766 468999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------hccc
Q 000818 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------IGGR 758 (1268)
Q Consensus 691 edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------~~~r 758 (1268)
+.|.+++|.+..+.+++|++.+..+|...++..++.+...|.++..++..|...+++++..+.. ....
T Consensus 240 ~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~ 319 (700)
T PRK12323 240 EAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRR 319 (700)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988766532 1112
Q ss_pred CCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 759 SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 759 ~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
....++.+.|..+++++.+..++|+.+.++++.||++||+|+.+.
T Consensus 320 ~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~~ 364 (700)
T PRK12323 320 LAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFR 364 (700)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCC
Confidence 223467788999999999999999999999999999999998763
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=492.79 Aligned_cols=462 Identities=27% Similarity=0.440 Sum_probs=381.1
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|+......||+.|..|..
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+.++++++++...++++++++++.+.+.| +.+++|||||||+|+|+..++|+||++||+||.+++|||+|+++
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p--~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP--TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc--ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 9999999999999988889999999999988765 67899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++++++|+|||+.|.|.+++.+++..+|.+++.++|+.++++++.+|+..++|++|+|+++|+++..+ .+.|+.++|.+
T Consensus 160 ~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~ 239 (527)
T PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRA 239 (527)
T ss_pred hhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh------------cccCCCHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI------------GGRSLTEA 763 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~------------~~r~ls~~ 763 (1268)
+++...++.+|+|++++..++...++..+++|...|.++..++..|+.+|+|++..+... .......+
T Consensus 240 ~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 319 (527)
T PRK14969 240 MLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRL 319 (527)
T ss_pred HHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999998776531 11222345
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcCCCCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQY 843 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1268)
+.+.|..+++++.++.+.|+.+.++++.||++||+|+.+.... ..... ... +...|..
T Consensus 320 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~~-~~~~~------~~~---------------~~~~~~~ 377 (527)
T PRK14969 320 SPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRPSE-QDSGA------GRA---------------PGAVPGV 377 (527)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCCCC-CCcCC------CCC---------------CCCCCCC
Confidence 7778889999999999999999999999999999999753311 10000 000 0000000
Q ss_pred CCCCCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHHHHHH
Q 000818 844 MPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIE 923 (1268)
Q Consensus 844 ~p~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~~vle 923 (1268)
.+. .|++ .+ .+. .. ....| .+. .. ...-|.++++
T Consensus 378 ~~~---~~~~--~~----~~~--~~--------~~~~~-------------~~~------------~~--~~~~W~~lv~ 411 (527)
T PRK14969 378 NRT---RAVP--TA----APA--AP--------AAATP-------------SDR------------QS--FNGNWRALVD 411 (527)
T ss_pred CCC---CCCC--CC----CCC--Cc--------cCCCC-------------CCC------------Cc--ccccHHHHHH
Confidence 000 0000 00 000 00 00000 000 00 1124999999
Q ss_pred HhcchHHHHHHHHccceeeeecccceEEEEEEecCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEcc
Q 000818 924 RCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLP 992 (1268)
Q Consensus 924 ~~~s~~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~ae~~~~~I~~a~e~vlg~~Vev~i~~~~ 992 (1268)
.+....+-.-|..|+.+.++.++ .+++.......--..++....|+.|+...||..|+|.|.+-.
T Consensus 412 ~L~l~g~~~qLA~n~~l~~~~~~----~v~L~l~~~~~~L~~~~~~~~L~~ALs~~~G~~~~l~I~~g~ 476 (527)
T PRK14969 412 QLKLSGLARELAQNCELKSFSED----RIELRVPEAHKHLLDKPYQDKLQAALEQHFGRPVQLIFSLGG 476 (527)
T ss_pred HcCCchHHHHHHHhhhhhcccCC----EEEEEeChhhhhhcCHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 99877777777788899988764 466666543322335666889999999999999999999643
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=492.71 Aligned_cols=339 Identities=29% Similarity=0.517 Sum_probs=317.8
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s 539 (1268)
.|.+||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|..+..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 48899999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCc
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV 619 (1268)
Q Consensus 540 G~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL 619 (1268)
+.+++|+++|+++.+++++|+++++.+.+.| +++++|||||||+|+|+.+++|+|+++||+||.+++|||+|++.+++
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P--~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLP--ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhcc--ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 9999999999999999999999999998876 68999999999999999999999999999999999999999999999
Q ss_pred chhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHHHhc
Q 000818 620 PRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVG 698 (1268)
Q Consensus 620 ~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~eLVG 698 (1268)
+++|+|||+.++|.+++.+++..||..++.++|+.++++++++|++.++|++|+++++|++++.+ ++.||.++|.+++|
T Consensus 160 ~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg 239 (491)
T PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999877 46899999999999
Q ss_pred ccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-------------hcccCCCHHhH
Q 000818 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------------IGGRSLTEAEL 765 (1268)
Q Consensus 699 ~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-------------~~~r~ls~~sl 765 (1268)
.+..+.+|+|+++++.+|..+++..+++|+..| +|..++..|..+++++...+.. ....... ++.
T Consensus 240 ~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 317 (491)
T PRK14964 240 CVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKI-GST 317 (491)
T ss_pred cCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhC-CCH
Confidence 999999999999999999999999999999876 7999999999999888755432 1111222 677
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 766 e~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
..|.+++++|.++..+++.+.++++.+|+++++||.+
T Consensus 318 ~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~ 354 (491)
T PRK14964 318 IFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYL 354 (491)
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999984
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=483.44 Aligned_cols=478 Identities=25% Similarity=0.435 Sum_probs=375.2
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.|+|.......||+.|..|..
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.+.++++++++...++++++++++.+.+.+ +.++++||||||+|+|+..++++||++||+||.+++|||+|++.
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p--~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMP--SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhh--hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 9999999999999988889999999999998765 67899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
.+++++|+|||++|.|.+++.+++..+|.+++.++|+.++++++.+|+..++||+|+|+++|++++.+ ++.|+.++|.+
T Consensus 160 ~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~ 239 (546)
T PRK14957 160 HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQ 239 (546)
T ss_pred hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 67899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------hcccCCCHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------IGGRSLTEA 763 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------~~~r~ls~~ 763 (1268)
+++....+.+|+|++++..++...++..++.+...|.+...++..|...+.+++..+.. ........+
T Consensus 240 ~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 319 (546)
T PRK14957 240 MLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILAKI 319 (546)
T ss_pred HHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998444335433332 111222345
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcCCCCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQY 843 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1268)
+.+.|..+++++.++.+.|+...++++.||++||+|+.+...... . ..+ .. ..+... . +.. . +.+..
T Consensus 320 s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~~p~~~~-~---~~~-~~---~~~~~~-~--~~~-~-~~~~~ 386 (546)
T PRK14957 320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQKKNLI-D---KTQ-TS---KSNISP-I--VSK-N-DINLL 386 (546)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC-c---ccc-cc---cCCCCc-c--ccc-c-ccccc
Confidence 777888899999999999999999999999999999885221110 0 000 00 000000 0 000 0 00000
Q ss_pred CC-CCCCCCCCcCCCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHHHHH
Q 000818 844 MP-QNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCI 922 (1268)
Q Consensus 844 ~p-~~s~~p~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~~vl 922 (1268)
.+ ....+|.+.+.+. +.. .+..+++ ++. ....+..-|..++
T Consensus 387 ~~~~~~~~~~~~~~~~----------------------~~~-----~~~~~~~------~~~-----~~~~~~~~w~~~~ 428 (546)
T PRK14957 387 KNTFKSEQPKQTVKAV----------------------VAQ-----NNDSTAS------ENT-----QEQSLDKKWFNLL 428 (546)
T ss_pred cccccccccccCCCCC----------------------Ccc-----CCCCCCC------CCC-----CCCcccCCHHHHH
Confidence 00 0000000000000 000 0000000 000 0000124499999
Q ss_pred HHhcchHHHHHHHHccceeeeecccceEEEEEEecCchhhhhH--HHhHHHHHHHHHHHhCCcEEEEEEEcc
Q 000818 923 ERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRA--ERFLSSITNSIETVLRRNVEVRIILLP 992 (1268)
Q Consensus 923 e~~~s~~lr~lL~~~GkL~s~~~~~~~~va~i~f~~~~~~~~a--e~~~~~I~~a~e~vlg~~Vev~i~~~~ 992 (1268)
+.+....+-..|.+++.|.+..++ .+++......-.-.- ......|+.|++..+|+.| |+|.+..
T Consensus 429 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 495 (546)
T PRK14957 429 NRIKLKGFTKTLAFNSHLISDNSE----TFVIHLNEDAKKILELDPQSIAKLQASISEYLNNPS-FRLDIKN 495 (546)
T ss_pred HHhcccHHHHHHHhcchhhcccCC----eEEEEeCcchHHHhccChhHHHHHHHHHHHHcCCCc-eEeecCc
Confidence 999988888888899999999765 456655543322222 4556679999999999999 8887644
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=497.16 Aligned_cols=345 Identities=32% Similarity=0.564 Sum_probs=322.2
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|..|++||||++|+|||||+++++.|.++|..+++.|.|||+||+|||||+++++||+.|+|+......||+.|..|..
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999988777889999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.+.++++||+.+.+++++|+++++.+.+.+ ..+++|||||||+|+|+...+|+|||+||+++.+++|||+|+++
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P--~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP--VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhcc--ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 9999999999999998899999999999988765 56889999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++|+++|+|||++|+|.+++.++|..+|.+++.+|++.++++++..|++.++|++|+++++|+++..+ ++.|+.+.|.+
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~ 239 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSG 239 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------hcccCCCHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------IGGRSLTEA 763 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------~~~r~ls~~ 763 (1268)
++|....+.+++|+++++.+|...++..+++|+..|.++..++..|..+|++++..+.. ........+
T Consensus 240 ~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~ 319 (830)
T PRK07003 240 MLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELL 319 (830)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998766543 111222346
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
+.+.|..+++++......|+.+.++++.|||+||+|+.+.
T Consensus 320 s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~~ 359 (830)
T PRK07003 320 SPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359 (830)
T ss_pred CHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcCC
Confidence 7778999999999999999999999999999999998753
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=487.07 Aligned_cols=346 Identities=29% Similarity=0.508 Sum_probs=321.6
Q ss_pred hhhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC----CCCCCCC
Q 000818 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD----QTKPCGY 530 (1268)
Q Consensus 455 ~~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e----~~~PCg~ 530 (1268)
..+|.+|++||||++|+|++||+++++.|.+++..++++|+|||+||+|||||++|++||++++|.... ...||+.
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 356899999999999999999999999999999999999999999999999999999999999997542 3579999
Q ss_pred cccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEE
Q 000818 531 CRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610 (1268)
Q Consensus 531 C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfI 610 (1268)
|..|..+..+.+++++++|+++..++++++++++.+.+.| ++++++||||||+|+|+..++++|+++||+|+.+++||
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P--~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP--LQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc--ccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 9999999999999999999998899999999999998765 78999999999999999999999999999999999999
Q ss_pred EEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C
Q 000818 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG----K 686 (1268)
Q Consensus 611 LaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg----k 686 (1268)
++|++.++++++|++||++|+|.+++.+++..||..+++++|+.++++|+.+|+..++|++|+|+++|++++.++ +
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~ 242 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDN 242 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997663 2
Q ss_pred ccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh-----------
Q 000818 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------- 755 (1268)
Q Consensus 687 ~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~----------- 755 (1268)
.||.++|.++++...++++|+|+++++.+|...++..+++|+..|++|..++..|+.+++.++..+...
T Consensus 243 ~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~ 322 (507)
T PRK06645 243 IISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFN 322 (507)
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHH
Confidence 799999999999999999999999999999999999999999999999999999999999888766431
Q ss_pred --cccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 756 --GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 756 --~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
.......++...|.+++++|.++..+++.+.++++++|++|++|+..
T Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~ 371 (507)
T PRK06645 323 DRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYS 371 (507)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 11122345667899999999999999999999999999999999874
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=487.22 Aligned_cols=344 Identities=28% Similarity=0.500 Sum_probs=322.2
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
|.+|++||||++|+|||||+++++.|.++|..++++|+|||+||+|+|||++|++||++++|.......||+.|.+|..+
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999887788999999999999
Q ss_pred ccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
..|.+++++++++++..++++||++++.+.+.+ ..+++|||||||+|+|+..++++|+++||++|.+++|||+|+++.
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P--~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP--TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhh--hcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 999999999999998889999999999998765 568899999999999999999999999999999999999999999
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHHH
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~eL 696 (1268)
+++++|++||++|.|.+++.+++..+|.+++.++|+.++++++.+|+..++|++|+|+++|+++..++ +.||.++|.++
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~l 239 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEM 239 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987764 68999999999
Q ss_pred hcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh-------------cccCCCHH
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-------------GGRSLTEA 763 (1268)
Q Consensus 697 VG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~-------------~~r~ls~~ 763 (1268)
+|....+.+|+|++++..++...++..++++...|.++..++..|..++++++..++.. .......+
T Consensus 240 LG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~ 319 (702)
T PRK14960 240 LGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLI 319 (702)
T ss_pred hccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999988766541 11112335
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
+.+.|.++++++.+....|+.+.+++++||++|++|+.+.
T Consensus 320 s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~~ 359 (702)
T PRK14960 320 SAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFR 359 (702)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhCC
Confidence 6677889999999999999999999999999999999864
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=472.34 Aligned_cols=347 Identities=31% Similarity=0.544 Sum_probs=321.6
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.+.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+.++++|+++...++++++.+++.+.+.+ +.+.++||||||+|+|+..++++|+++||+++.+++|||+|+++
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p--~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP--MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhh--hcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 9999999999999988889999999999888765 67899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~e 695 (1268)
++++++|++||++|.|.+++.+++..+|..++.++++.++++++++|+..++|++|.|+++|++++..+ +.||.++|.+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~ 239 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARG 239 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986553 5899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh----------------hcccC
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------------IGGRS 759 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~----------------~~~r~ 759 (1268)
+++....+.+|++++++..+|...++..+..|+..|.++..++..|..+||+++..+.. .....
T Consensus 240 ~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~~~ 319 (624)
T PRK14959 240 VLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWLGW 319 (624)
T ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876532 01122
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCC
Q 000818 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805 (1268)
Q Consensus 760 ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~ 805 (1268)
+..++...|.++++.+.++..+|+.+.++++.||++||+|+.++..
T Consensus 320 A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~~~~ 365 (624)
T PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLPRL 365 (624)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 3446777888999999999999999999999999999999987643
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=481.94 Aligned_cols=345 Identities=31% Similarity=0.524 Sum_probs=323.6
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+||+||++++..|+++|..++++|+||||||+|+|||++|++||++++|.......||+.|+.|..
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.++++++++++...++++|+++++.+.+.| +.++++||||||+|+|+..++|+|+++||+||.+++|||+|+++
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p--~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP--ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch--hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 9999999999999988788999999999988755 68999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
.+++++|++||+.+.|.+++.+++..||..++.++|+.++++++.+|+..++|++|.|+++|++++.+ ++.||.++|.+
T Consensus 160 ~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~ 239 (563)
T PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRS 239 (563)
T ss_pred HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999776 56899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------hcccCCCHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------IGGRSLTEA 763 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------~~~r~ls~~ 763 (1268)
+++...++.+++|++++..+|..+++..+..|+..|++|..++..|.++||+++..+.. .....+..|
T Consensus 240 llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~~~ 319 (563)
T PRK06647 240 KMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLREF 319 (563)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999876654 111223458
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
+.++|.++++.|.++++++|.+.+++++||+++++||...
T Consensus 320 s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~ 359 (563)
T PRK06647 320 DLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLK 359 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8899999999999999999998899999999999999843
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-50 Score=464.63 Aligned_cols=347 Identities=31% Similarity=0.567 Sum_probs=322.6
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC--------CCCCC
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD--------QTKPC 528 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e--------~~~PC 528 (1268)
.++.|++||||++|+||+||+.+++.|.+++..++++|+|||+||+|+|||++|++||+.++|+.+. ...||
T Consensus 2 ~~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 2 SYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred ccHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 3788999999999999999999999999999999999999999999999999999999999996421 14699
Q ss_pred CCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEE
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVV 608 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vV 608 (1268)
+.|++|+.+..|.+++|+++++....++++|+++++.+...| +++.++||||||+|.|+.++++.|+++||+|+..++
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p--~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~ 159 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGP--QKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAI 159 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhch--hcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeE
Confidence 999999999999999999999987778999999999998765 789999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----
Q 000818 609 FIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL---- 684 (1268)
Q Consensus 609 fILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll---- 684 (1268)
|||+|++..++.++|++||+++.|.+++.+++..||..+++++++.++++++++|+..++||+|.|+++|+++..+
T Consensus 160 ~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~ 239 (397)
T PRK14955 160 FIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVES 239 (397)
T ss_pred EEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred --CCccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------
Q 000818 685 --GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------- 754 (1268)
Q Consensus 685 --gk~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-------- 754 (1268)
++.||.++|.++++...++++|+|++++..++...++..+.+|+..|.+|+.|+..|..+||+++..+..
T Consensus 240 ~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~ 319 (397)
T PRK14955 240 EGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVER 319 (397)
T ss_pred CCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 3589999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ------hcccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCC
Q 000818 755 ------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805 (1268)
Q Consensus 755 ------~~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~ 805 (1268)
...+++..++.+.|.++++.+.++|++||++.++++.||.++++|+....+
T Consensus 320 ~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~~~ 376 (397)
T PRK14955 320 PDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHP 376 (397)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhCCC
Confidence 113445668889999999999999999999889999999999999986433
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=489.13 Aligned_cols=344 Identities=29% Similarity=0.545 Sum_probs=320.2
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+|||||+++++.|+++|..++++|+|||+||+|||||++|++||+.|+|.......||+.|..|..
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999986666789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.+.+++++++++..+++.||++++.+.+.+ ..+++|||||||+|+|+..++|+|||+||+||.+++||++|+++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P--~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP--SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhh--hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 9999999999999987788999999999998765 56899999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++|+++|+|||++|.|.+++.+++..+|.+++..+++.++++++.+|+..++|++|+|+++|+++..+ .+.|+.+.|.+
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~ 239 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQT 239 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987765 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhc-----------ccCCCHHh
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG-----------GRSLTEAE 764 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~-----------~r~ls~~s 764 (1268)
++|.+....+..+++.+..+|...++..+..|+..|.++..|+..|..+||+++..+.... ......++
T Consensus 240 llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s 319 (944)
T PRK14949 240 MLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLS 319 (944)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCC
Confidence 9999998889999999999999999999999999999999999999999999987664311 12223466
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 765 le~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
.+.|.+++++|.++.++|+.+.++++.||++||+|+.+
T Consensus 320 ~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~ 357 (944)
T PRK14949 320 PEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAF 357 (944)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Confidence 77889999999999999999999999999999999874
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=454.51 Aligned_cols=343 Identities=28% Similarity=0.529 Sum_probs=319.6
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|+||+||+++++.|.+++..++++|+|||+||+|+|||++|+++|+.++|.......||+.|..|..
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999987777889999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..+.+++++++++++..+++.++++++.+.+.| +.++++||||||+|+|+..++++|+++||++|.+++||++|+++
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p--~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP--SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCc--ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 9999999999999887678999999999988765 57889999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~e 695 (1268)
++++++|++||+.+.|.+++.+++..||..+++++|+.++++++++|+..++|++|.|+++|++++.++ +.||.++|.+
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~ 239 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTD 239 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997765 6899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhc--------------ccCCC
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG--------------GRSLT 761 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~--------------~r~ls 761 (1268)
+++...++.+|++++++..++...++..+++++..|.+|..|+..|..+++|++..+.... ...+.
T Consensus 240 ~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (363)
T PRK14961 240 MLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQ 319 (363)
T ss_pred HHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987665411 12223
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 762 ~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
.++.+.|.++++.+.++..+|+.+.+++++||+++++|+.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 320 NNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 3566778899999999999999999999999999999985
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=465.74 Aligned_cols=345 Identities=34% Similarity=0.611 Sum_probs=321.4
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.|.+|++||||++|++++||++++..|.+++..++++|+||||||+|+|||++|+++|+.++|..+....||+.|.+|..
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|.+++++++++++..++++++.+.+.+.+.| +.+.++||||||+|+|+.+++++|+++||+||.+++||++|++.
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P--~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP--IKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc--ccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 9999999999999988889999999999998766 68999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~e 695 (1268)
++++++|++||+++.|.+++.+++..||..+++.+|+.++++++++|+..++|++|.|+++|++++.+ ++.||.++|.+
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~ 239 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEE 239 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999776 46899999999
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCC---------CHHhHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL---------TEAELE 766 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~l---------s~~sle 766 (1268)
+++...++.+|+|++++..++...++..+++|+..|.+|..++..|..+||+++..+.......+ ..++.+
T Consensus 240 ~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~~~~ 319 (486)
T PRK14953 240 FLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEKPLE 319 (486)
T ss_pred HhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999877654100000 234577
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCC
Q 000818 767 RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804 (1268)
Q Consensus 767 ~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~ 804 (1268)
.|.++++++.++..+|++ .+++++||+++++||.++.
T Consensus 320 ~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~~ 356 (486)
T PRK14953 320 ALLYLEDVINKAFSEART-RDPLRAYELAILKLLYVKD 356 (486)
T ss_pred HHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhhCC
Confidence 899999999999999999 9999999999999998544
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=433.89 Aligned_cols=314 Identities=50% Similarity=0.702 Sum_probs=276.7
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
..+.|++||||++|+|++||+++++.|++++.+ +..|+||||||||||||++|++||++|+| ++..||+.|..|..
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~---~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNC---EQLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcC---ccccccchhhhccc
Confidence 567899999999999999999999999999998 77899999999999999999999999998 55689999999988
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
...|.+ +........+.+........ +.....+|||||||||.|+.++|++|+++||.++.+++|||+||..
T Consensus 98 derGis-----vvr~Kik~fakl~~~~~~~~---~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 98 DERGIS-----VVREKIKNFAKLTVLLKRSD---GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred cccccc-----chhhhhcCHHHHhhcccccc---CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 877776 22222233444444333111 1134678999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHH-
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE- 695 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~e- 695 (1268)
++|+.+|.|||+.|.|.++.+++++.+|+.||.+||++++++|+.+|+..++||||+|+.+|++++..|++||...+.+
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~ 249 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEE 249 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999655554
Q ss_pred HhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh---------hcccCCCHHhHH
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------IGGRSLTEAELE 766 (1268)
Q Consensus 696 LVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~---------~~~r~ls~~sle 766 (1268)
+.|.++++.+.++++.++.+|+.+..+.+++++..|.+|.+++.+|+..+++++ +.+. +...+-+..+.+
T Consensus 250 ~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~-g~~d~~k~~~~~kl~~~~~~~~dg~ 328 (346)
T KOG0989|consen 250 LAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDII-GLSDEQKAQISLKLFTRDKRLEDGE 328 (346)
T ss_pred HhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhccchhhcch
Confidence 456999999999999999999999999999999999999999999999999885 2222 344444778888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000818 767 RLKHALKLLSEAEKQLR 783 (1268)
Q Consensus 767 ~L~raL~iLsEaDkqLK 783 (1268)
.+..+|..|++++++++
T Consensus 329 ~l~~~L~~L~~~~~ql~ 345 (346)
T KOG0989|consen 329 DLELALKDLLEAEKQLR 345 (346)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999999986
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=457.65 Aligned_cols=345 Identities=33% Similarity=0.582 Sum_probs=322.9
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccC-CCCCCCCCccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT-DQTKPCGYCRECN 535 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~-e~~~PCg~C~sC~ 535 (1268)
.+.+|++||||++|+|||||+.++..|.+++..++++|+||||||+|+|||++|++||++++|... ....||+.|..|.
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999654 3457999999999
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
.+..+.+.+++++++....+++.++++.+.+.+.+ ..+.++||||||+|.|+.+++++|+++||+++.+++|||+|++
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~--~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~ 160 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP--SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh--hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC
Confidence 99999999999999888888999999999888765 4689999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHH
Q 000818 616 IDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVN 694 (1268)
Q Consensus 616 ~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~ 694 (1268)
..++.++|++||+.+.|.+++.+++..||..+++++|+.++++++.+|+..++||+|.|+++|+++..+ ++.||.++|.
T Consensus 161 ~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~ 240 (451)
T PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVA 240 (451)
T ss_pred hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999866 5679999999
Q ss_pred HHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-hcccCCCHHhHHHHHHHHH
Q 000818 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-IGGRSLTEAELERLKHALK 773 (1268)
Q Consensus 695 eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-~~~r~ls~~sle~L~raL~ 773 (1268)
++++...++++|+|++++..+|..+++..+.+|+..|++|..|+..|.++||+++..++. ...++...++.+.|.+++.
T Consensus 241 ~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~~ii~ 320 (451)
T PRK06305 241 KALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLLEIID 320 (451)
T ss_pred HHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654 3445566789999999999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 774 LLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 774 iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
.+.++|++||++.+.+++||+++++|+..-
T Consensus 321 ~l~e~d~~lk~~~~~k~~lE~lll~l~~~~ 350 (451)
T PRK06305 321 FLGESAKHIQLTIFEKTFLETVIIHLIRIY 350 (451)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 999999999999899999999999998753
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=449.13 Aligned_cols=334 Identities=31% Similarity=0.572 Sum_probs=311.4
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
+.+|++||||++|+|||||+++++.|.+++..++++|+||||||+|+|||++|++||++++|.......||+.|..|..+
T Consensus 1 ~~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 1 MQALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred CccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999877777899999999999
Q ss_pred ccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
..+.+++++++++++..+++.|+++++.+.+.| +.+++|||||||+|+|+.+++|+||++||+||.+++|||+|+++.
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P--~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKP--SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCc--ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 999999999999988889999999999887655 578999999999999999999999999999999999999999999
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHHH
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~eL 696 (1268)
+++++|+|||++|+|.+++.+++..||..++.++|+.++++++.+|+..++|++|+|+++|+++..+. +.||.++|.++
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~ 238 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADM 238 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998774 68999999999
Q ss_pred hcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHH
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLS 776 (1268)
Q Consensus 697 VG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLs 776 (1268)
++...++.+++++++++.+|...++..+.+| .|.++..++..|..++++++.... .......|.+.+++|.
T Consensus 239 lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~-------~~~~l~~l~r~~riL~ 309 (535)
T PRK08451 239 LGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKD-------SEFSILLYERFFRILS 309 (535)
T ss_pred hCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhccc-------ccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 589999999999988887653221 2245567889999999
Q ss_pred HHHHHhhccCCchHHHHHHHHHccCC
Q 000818 777 EAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 777 EaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
+++..++.+.++++.|++++++|+..
T Consensus 310 ~~k~~l~~g~~~~i~l~~~~~~~~~~ 335 (535)
T PRK08451 310 SAKSLLKEGADDGFVLLLMLFKMKEA 335 (535)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999983
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=468.40 Aligned_cols=345 Identities=35% Similarity=0.606 Sum_probs=315.7
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC-CCCCCCCcccc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD-QTKPCGYCREC 534 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e-~~~PCg~C~sC 534 (1268)
..+.+|++||||++|+||+||+++++.|.+++..++++|+||||||+|+|||++|++||++|+|.... ...||+.|..|
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999997543 34699999988
Q ss_pred cccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
. +.+++++++++++..++++|+++++.+...| +.++++||||||+|+|+..++++||++||+||.+++|||+|+
T Consensus 83 ~----~~~~Dvieidaasn~~vd~IReLie~~~~~P--~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTt 156 (725)
T PRK07133 83 V----NNSLDIIEMDAASNNGVDEIRELIENVKNLP--TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATT 156 (725)
T ss_pred h----cCCCcEEEEeccccCCHHHHHHHHHHHHhch--hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcC
Confidence 4 5688999999988788999999999998876 679999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHH
Q 000818 615 DIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLV 693 (1268)
Q Consensus 615 ~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV 693 (1268)
++++|+++|++||++|.|.+++.+++..||..++.++|+.++++++.+|+..++|++|+|+++|++++.++ +.||.++|
T Consensus 157 e~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V 236 (725)
T PRK07133 157 EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNV 236 (725)
T ss_pred ChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764 56999999
Q ss_pred HHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhc-----------ccCCCH
Q 000818 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG-----------GRSLTE 762 (1268)
Q Consensus 694 ~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~-----------~r~ls~ 762 (1268)
.++++....+.+++|++++..++...++..+.+|+..|.+|..++..|..++||++..+.... ...+ .
T Consensus 237 ~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~-~ 315 (725)
T PRK07133 237 EELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKL-K 315 (725)
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHh-c
Confidence 999999999999999999999999999999999999999999999999999999986653300 0011 3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCCCC
Q 000818 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDL 807 (1268)
Q Consensus 763 ~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~~~ 807 (1268)
++...|.++++.+.++..+|+.+.+++++||+++++|+.++....
T Consensus 316 ~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~~~ 360 (725)
T PRK07133 316 IDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSELEE 360 (725)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCch
Confidence 466788899999999999999999999999999999998766543
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=434.04 Aligned_cols=341 Identities=45% Similarity=0.725 Sum_probs=319.0
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
+.+|.+||||++|++++||+.++..|.+++..++++|+||||||+|+|||++|++||+.++|.......||+.|.+|..+
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999866666899999999999
Q ss_pred ccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
..+.+++++++++....+++.++.+++.+...+ ++++++||||||+|.|+..++++|+++||++|.+++||++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p--~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAP--SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCc--ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 999999999999887677889999999988655 679999999999999999999999999999999999999999999
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHHH
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~eL 696 (1268)
+++++|++||+.+.|.+++.+++..||..+++++|+.++++++++|+..++|++|.|.++|+++..++ +.||.++|.++
T Consensus 159 ~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~ 238 (355)
T TIGR02397 159 KIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNEL 238 (355)
T ss_pred HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998874 56999999999
Q ss_pred hcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-------------hcccCCCHH
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------------IGGRSLTEA 763 (1268)
Q Consensus 697 VG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-------------~~~r~ls~~ 763 (1268)
++...+..+|++++++..++...++..+.+|+..|.+|..++..|.++|++++..+.. ...+++..+
T Consensus 239 ~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~~~ 318 (355)
T TIGR02397 239 LGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALKL 318 (355)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999877642 123455678
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHcc
Q 000818 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~ 800 (1268)
+.+.|.++++.|.++|+.+|++.+.+++||.++++||
T Consensus 319 s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 319 SLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 8899999999999999999998899999999999997
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=446.30 Aligned_cols=448 Identities=27% Similarity=0.465 Sum_probs=364.2
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
+++|++||||++|+|+|||+++++.|.+++..++++|+||||||||||||++|++||+.++|..+....||+.|..|..+
T Consensus 1 ~~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 1 MEALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred CchhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred ccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
..+.+.++++++++...+++.++.+.+.+.+.+ +.+.++||||||+|+|+..++++|+++|++++.+++||++|+++.
T Consensus 81 ~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p--~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~ 158 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRP--MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLE 158 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHHHHHHHHHhhCh--hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChH
Confidence 999999999999988889999999999888755 678999999999999999999999999999999999999999888
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHHH
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNEL 696 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~eL 696 (1268)
+++++|++||+++.|.+++.+++..+|+.++..+++.++++++++|+..++||+|.++++|++++.+ ++.||.++|.++
T Consensus 159 kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~ 238 (472)
T PRK14962 159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEA 238 (472)
T ss_pred hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998776 457999999999
Q ss_pred hcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHH
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLS 776 (1268)
Q Consensus 697 VG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLs 776 (1268)
++...++.+++|++++..+|..+|+.++.+|+..|++|..|++.|...+.+.+. ..+...+...+..+.
T Consensus 239 l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~-----------~a~~~~~~~~~~~~~ 307 (472)
T PRK14962 239 LGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE-----------RERANDIIQVSRQLL 307 (472)
T ss_pred HcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-----------CCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888776654432 123346677788899
Q ss_pred HHHHHhhccCCchHHHHHHHHHccCC-CCCCCccCCCccccCCCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCcC
Q 000818 777 EAEKQLRLSSERCTWFTATLLQLGSM-HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLR 855 (1268)
Q Consensus 777 EaDkqLK~S~d~rl~LE~aLL~L~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~p~~~~ 855 (1268)
++-..++....+.++.++++++++.. |++.. .+. ....... ..|+...
T Consensus 308 ~~~~~i~~~e~~~~l~~~~~~~~~~~~~~~~~-------------~~~---------~~~~~~~---------~~~~~~~ 356 (472)
T PRK14962 308 NILREIKFAEEKRLVCKLGSASIATRFSSPNV-------------QEN---------DVEEKND---------NSNVQQK 356 (472)
T ss_pred HHHHHhCCcchHHHHHHHHHHHHHHhCCChhH-------------HHH---------HHHhhcc---------ccccccc
Confidence 99999999999999999999999862 21110 000 0000000 0000000
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCcccccccccccccCCccccccccccCChhHHHHHHHHHHHHhcch-HHHHHH
Q 000818 856 EPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSK-TLKQLL 934 (1268)
Q Consensus 856 ~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le~iW~~vle~~~s~-~lr~lL 934 (1268)
. ....+. +. ....-.+- +++..|+++++.+..+ -+.-++
T Consensus 357 ~------~~~~~~-----------~~----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 396 (472)
T PRK14962 357 E------KKKEES-----------KA----------------------KEEKQEDI-EFEKRFKELMEELKEKGDLSIFV 396 (472)
T ss_pred c------chhhhc-----------cc----------------------hhhhhhhh-hHHHHHHHHHHHHHhcCchhhhh
Confidence 0 000000 00 00000112 3789999999987542 233333
Q ss_pred HHccceeeeecccceEEEEEEecCchh--hhhHHHhHHHHHHHHHHHhCCcEEEEEEEccC
Q 000818 935 QVHGKLLSISEVERVLIAYVAFGDGDI--KSRAERFLSSITNSIETVLRRNVEVRIILLPD 993 (1268)
Q Consensus 935 ~~~GkL~s~~~~~~~~va~i~f~~~~~--~~~ae~~~~~I~~a~e~vlg~~Vev~i~~~~~ 993 (1268)
.-...-+.+..+ +.+|.|....- +...++....|+..|.+++|.+++|++.+.+.
T Consensus 397 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (472)
T PRK14962 397 ALSLSEVEEDGD----KVKISFDSSKAMHYELMKEKLPELENLFSRKLGKNVEVELRLMGK 453 (472)
T ss_pred hhccCCceeeCC----eEEEEeChHHhHHHHHHHHhHHHHHHHHHHHhCCCeeEEEEEecC
Confidence 223223444443 78999986443 23445678899999999999999999999654
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=445.85 Aligned_cols=342 Identities=33% Similarity=0.592 Sum_probs=312.2
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|++||+.|+|..+....||+.|..|+.+
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
..+.+++++++++++..++++++.+++.+...| +.++++||||||+|+|+..++++|+++||+||.+++|||+|+.++
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P--~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLP--TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhch--hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 999999999999988789999999999998765 678899999999999999999999999999999999999999999
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CccCHHHHHHH
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-k~IT~edV~eL 696 (1268)
+++++|++||+++.|.+++..++..||..++.++|+.++++++.+|+..++|++|.|+++|+++..+. ..||.++|.++
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~el 240 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998774 45999999999
Q ss_pred hcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcc---cCCCHHhHH-------
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG---RSLTEAELE------- 766 (1268)
Q Consensus 697 VG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~---r~ls~~sle------- 766 (1268)
++.+..+.+|+|++++..++...++..+++|+..|++|..++..|..++||++..+..... ..+.....+
T Consensus 241 lg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~~~~ 320 (605)
T PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQ 320 (605)
T ss_pred hccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876654111 111221222
Q ss_pred -------HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 767 -------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 767 -------~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
.+-.++..+.++-.+||.+.++..-+|..+.++-.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (605)
T PRK05896 321 KLLSIEFNTNFLLNNFVSLINRLKASVNQVFEFEIYLYKIIN 362 (605)
T ss_pred HHhhhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 12235667778889999999999999999998865
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=400.16 Aligned_cols=336 Identities=30% Similarity=0.511 Sum_probs=304.4
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
.++.+|++||||++|+||+||+.+++.|.++++.++++++||||||+|+|||++|+++|+.++|..... +|
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~--~~------- 72 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD--PN------- 72 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC-------
Confidence 467899999999999999999999999999999999999999999999999999999999998743211 11
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
.+...+++++++....+++.++.+++.+...| ++++++||||||+|.++..+++.|+++|++++.+++||++++.
T Consensus 73 ---~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p--~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~ 147 (367)
T PRK14970 73 ---EDFSFNIFELDAASNNSVDDIRNLIDQVRIPP--QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE 147 (367)
T ss_pred ---CCCCcceEEeccccCCCHHHHHHHHHHHhhcc--ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCC
Confidence 11256777888777677899999999887654 6789999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHH
Q 000818 616 IDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVN 694 (1268)
Q Consensus 616 ~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~ 694 (1268)
..++.++|.+||+.+.|.+++.+++..||..++.++|+.++++++++|+..++||+|.++++|+++..+ ++.||.++|.
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~ 227 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVT 227 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877 5569999999
Q ss_pred HHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh--------------hcccCC
Q 000818 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--------------IGGRSL 760 (1268)
Q Consensus 695 eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~--------------~~~r~l 760 (1268)
++++...++++|+|++++..++..+++..+++|+..|.+|..|+..|.++||+++..+.. ...+++
T Consensus 228 ~~~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a 307 (367)
T PRK14970 228 ENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQS 307 (367)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887663 123445
Q ss_pred CHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCCCC
Q 000818 761 TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805 (1268)
Q Consensus 761 s~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp~~ 805 (1268)
..|+.++|.+++..|.++|+++|++.++++++|+++++|+....+
T Consensus 308 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~~~~ 352 (367)
T PRK14970 308 QKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASINFD 352 (367)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccC
Confidence 678999999999999999999999889999999999999986444
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=366.59 Aligned_cols=309 Identities=20% Similarity=0.300 Sum_probs=274.0
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s 539 (1268)
+|++||||++|+|++||++++..|..++..+++ +++|||||||||||++|+++|+++.|...
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~----------------- 63 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNM-PNLILSGPPGTGKTTSILALAHELLGPNY----------------- 63 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCC-ceEEEECCCCCCHHHHHHHHHHHHhcccC-----------------
Confidence 799999999999999999999999999998887 56899999999999999999999965321
Q ss_pred CCCccEEEEcCCCCcChHHHHHHHHHHHcCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCC
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 540 G~s~dfIEIDaSs~~gId~IReLIEea~~~pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eK 618 (1268)
...++++++++..+++.++++++.+..... ...+.++||||||+|.|+..++++|+++||.++..++||++||..++
T Consensus 64 --~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 64 --KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred --ccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 236889999988889999999887654321 12357899999999999999999999999999999999999999999
Q ss_pred cchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhc
Q 000818 619 VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698 (1268)
Q Consensus 619 L~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG 698 (1268)
+.++|+|||..+.|.+++.+++..+|..+++++|+.++++++.+|+..++||+|.++++|+.+....+.||.++|.++++
T Consensus 142 i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCD 221 (319)
T ss_pred cchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999997665456899999999999
Q ss_pred ccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHH
Q 000818 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEA 778 (1268)
Q Consensus 699 ~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEa 778 (1268)
...++.++++++++..++...++..+++|+..|++|..|+..|.+.++.. .++...-...+..++++
T Consensus 222 ~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~ 288 (319)
T PLN03025 222 QPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-------------DMPEFLKLEYLREIGFA 288 (319)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986654321 11222233678899999
Q ss_pred HHHhhccCCchHHHHHHHHHccC
Q 000818 779 EKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 779 DkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
|..|..|.++.+-|+.++.+++.
T Consensus 289 ~~~~~~g~~~~~~l~a~~~~~~~ 311 (319)
T PLN03025 289 HMRICDGVGSLLQLSGLLAKLCL 311 (319)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988865
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=346.44 Aligned_cols=313 Identities=27% Similarity=0.436 Sum_probs=277.1
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
+..+|.+||||.+|+|++||+.++..|..++..+.. +++||+||+|+|||++++.+++++.+...
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-------------- 67 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNM-PHLLFAGPPGTGKTTAALALARELYGEDW-------------- 67 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCcc--------------
Confidence 346799999999999999999999999999998876 45799999999999999999999854221
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
...++++++++..+.+.++..+..+....+.+...++||||||+|.|....++.|+++++.++..++||++++..
T Consensus 68 -----~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 68 -----RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred -----ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 346778877665566666666666554443333678999999999999999999999999999999999999999
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eL 696 (1268)
.++.+++.+||.++.|.+++.+++..+|..++.++|+.++++++++|+..++||+|.|+++|++++.+++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~ 222 (319)
T PRK00440 143 SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKI 222 (319)
T ss_pred cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred hcccchHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHH
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLL 775 (1268)
Q Consensus 697 VG~v~eedifdLLdAIls~D~~~ALk~LreLl-e~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iL 775 (1268)
++...++++|++++++..++..+++..+++|+ ..|.++..|+..|..++. ...++.+.|.+++..+
T Consensus 223 ~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~-------------~~~~~~~~l~~~~~~~ 289 (319)
T PRK00440 223 TGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVW-------------SLDIPEELKVELIDAI 289 (319)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------------hcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998 489999988877753211 1357888999999999
Q ss_pred HHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 776 SEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 776 sEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
.++|+++|+|.++.+.||.+++++|.+
T Consensus 290 ~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 290 GEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999864
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=335.61 Aligned_cols=323 Identities=25% Similarity=0.396 Sum_probs=266.5
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
..|++||||++|++|+||+.+++.|.+++..++. +++||+||+|||||++|+++++++.|...... . .|-+|..+.
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~-~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~--~-~~i~~~~~~ 78 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNL-PHLLVQGPPGSGKTAAVRALARELYGDPWENN--F-TEFNVADFF 78 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCcccccc--e-EEechhhhh
Confidence 4799999999999999999999999999998876 56899999999999999999999977542111 0 111111111
Q ss_pred c------CCCccEEEEcC----CCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEE
Q 000818 539 S------GKSRNFMEVDG----TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVV 608 (1268)
Q Consensus 539 s------G~s~dfIEIDa----Ss~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vV 608 (1268)
. .....+..+-+ .....++.++.++..+....+ +.+.++||||||+|.|....++.|+++|++++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~ 157 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRP-LSADYKTILLDNAEALREDAQQALRRIMEQYSRTCR 157 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCC-CCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCe
Confidence 0 01111111100 111234567777766544332 467789999999999999999999999999888899
Q ss_pred EEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc
Q 000818 609 FIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688 (1268)
Q Consensus 609 fILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~I 688 (1268)
||++++.+.++.++|.+||..+.|.+++.+++..+|..++.++++.++++++++|+..++||+|.+++.|++++...+.|
T Consensus 158 ~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~I 237 (337)
T PRK12402 158 FIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEI 237 (337)
T ss_pred EEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999988666789
Q ss_pred CHHHHHHHhccc-chHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHH
Q 000818 689 TSSLVNELVGVV-SEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELE 766 (1268)
Q Consensus 689 T~edV~eLVG~v-~eedifdLLdAIls~D~~~ALk~LreLl-e~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle 766 (1268)
|.++|.++++.. .++++|++++++..++..+++..+++|+ ..|.++..|+..|..... ..++..
T Consensus 238 t~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~--------------~~~~~~ 303 (337)
T PRK12402 238 TMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVAR--------------SRYRGD 303 (337)
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--------------HHCCHH
Confidence 999999999874 4889999999999999999999999987 799999888887754211 127788
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHcc
Q 000818 767 RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800 (1268)
Q Consensus 767 ~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~ 800 (1268)
.|.+++..|+++|+.||+|.++.+.||.++.++.
T Consensus 304 ~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~~ 337 (337)
T PRK12402 304 NLARLHRLAADADARLTDGANDRIQLEALLAELG 337 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998863
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=334.85 Aligned_cols=325 Identities=22% Similarity=0.360 Sum_probs=259.4
Q ss_pred CCccccCcHHHHHHHHHHHHcCC---------CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc
Q 000818 469 FFDELIGQNIVVQSLVNTISRGR---------IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIksgR---------i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s 539 (1268)
.|++|+||+++++.|++++..++ ++|+|||+||+|+|||++|++||+.++|.... ..|||.|..|+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLA 81 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 68999999999999999999987 88999999999999999999999999998654 579999999999999
Q ss_pred CCCccEEEEcCCC-CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCC
Q 000818 540 GKSRNFMEVDGTN-KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 540 G~s~dfIEIDaSs-~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eK 618 (1268)
+.+++++.+.+.. ..++++||++++.+...+ ..+++|||||||+|.|+..++|+||++||+||.+++||++|++++.
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p--~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRP--STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCc--ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHH
Confidence 9999999886542 367899999999998765 5789999999999999999999999999999999999999999999
Q ss_pred cchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-------------HhC
Q 000818 619 VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS-------------LLG 685 (1268)
Q Consensus 619 L~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLs-------------llg 685 (1268)
+++||+|||+.|.|.+++.+++..||.+ +. .++++++..++..++|+++.|+.+++.-. .+.
T Consensus 160 llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~--~~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~l~ 234 (394)
T PRK07940 160 VLPTIRSRCRHVALRTPSVEAVAEVLVR---RD--GVDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALRLA 234 (394)
T ss_pred ChHHHHhhCeEEECCCCCHHHHHHHHHH---hc--CCCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999974 22 36789999999999999999877653211 001
Q ss_pred Cc---------c---CHHHHHHHhcccchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH------cCCChHH
Q 000818 686 KR---------I---TSSLVNELVGVVSEEKLLELLELAMSS-----------DTAETVKRARELMD------SGVDPMV 736 (1268)
Q Consensus 686 k~---------I---T~edV~eLVG~v~eedifdLLdAIls~-----------D~~~ALk~LreLle------~G~dPl~ 736 (1268)
.. + ..+.+.++++.+.+....++++.+..+ ....+++.+.+... .......
T Consensus 235 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (394)
T PRK07940 235 RVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDALDR 314 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhHHH
Confidence 00 0 113344556666666777777664332 12233333333222 1234556
Q ss_pred HHHHHHHHHHHHHHHhhhh------------cccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 737 LMSQLASLIMDIIAGTYTI------------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 737 ILs~La~~irDLLa~k~~~------------~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
++.+|..+++|++..+... .......++...|.++++.+.++...|+...++++.||.+++++..
T Consensus 315 ~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~ 391 (394)
T PRK07940 315 ALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQ 391 (394)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7888999999998766531 0112223567788899999999999999999999999999998853
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=304.21 Aligned_cols=311 Identities=20% Similarity=0.309 Sum_probs=268.8
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
.+|++||||..+.||||+++.+..|.-.++.|.. |+++|.||||+||||.+.+||++|.....
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnm-P~liisGpPG~GKTTsi~~LAr~LLG~~~---------------- 77 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNM-PNLIISGPPGTGKTTSILCLARELLGDSY---------------- 77 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCC-CceEeeCCCCCchhhHHHHHHHHHhChhh----------------
Confidence 4699999999999999999999999999999986 88899999999999999999999953221
Q ss_pred cCCCccEEEEcCCCCcChHHHHHHHHHHHcCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 539 sG~s~dfIEIDaSs~~gId~IReLIEea~~~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.-.++|+|+++.+|+|.+|.-|+.+.+.. ....+++||||+||+|.|+..++.+|.++||-+...+.|+++||..+
T Consensus 78 ---ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 78 ---KEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred ---hhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchh
Confidence 33678999999999999999999887643 22358999999999999999999999999999999999999999999
Q ss_pred CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHh
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697 (1268)
Q Consensus 618 KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLV 697 (1268)
++..+|.|||.+++|.++++.++..+|..+++.|++.++++.|+.|+-.++||+|.|+|.|+.....-+-|+.+.|-.++
T Consensus 155 KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 155 KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVC 234 (333)
T ss_pred hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988777789999999999
Q ss_pred cccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHH
Q 000818 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSE 777 (1268)
Q Consensus 698 G~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsE 777 (1268)
+.-...-+.+++.+++.++..+|++.+.+|...|.+|..|+..+.+....+-...+ .. ...++.+.-
T Consensus 235 d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~---------~r----lE~ikeig~ 301 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAES---------LR----LEFIKEIGL 301 (333)
T ss_pred CCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHH---------HH----HHHHHHHhh
Confidence 99999999999999999999999999999999999999999888776543311111 11 123333444
Q ss_pred HHHHhhccCCchHHHHHHHHHccCC
Q 000818 778 AEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 778 aDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
+.-.+-.|.+..+-|.-++.+||..
T Consensus 302 thmrI~eGv~s~LQl~glla~l~~~ 326 (333)
T KOG0991|consen 302 THMRILEGVNSLLQLSGLLAKLCKV 326 (333)
T ss_pred HHhHHHhhHhHHHHHHHHHHHHHHh
Confidence 4444445556667777777777763
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=315.24 Aligned_cols=297 Identities=19% Similarity=0.284 Sum_probs=255.0
Q ss_pred CCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
++|++|+||+.+++.|.+++..++++|+|||+||+|+|||++|+.+|+.+.|.... +.+++++.
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~----------------~~h~D~~~ 64 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ----------------REYVDIIE 64 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC----------------CCCCCeEE
Confidence 47999999999999999999999999999999999999999999999999885431 23667777
Q ss_pred EcCC--CCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhc
Q 000818 548 VDGT--NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQS 625 (1268)
Q Consensus 548 IDaS--s~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~S 625 (1268)
+.+. ...++++|+++++.+...| +.+++||||||++|.|+..++|+||++||+||.+++||++|++++++++||+|
T Consensus 65 ~~~~~~~~i~v~~ir~~~~~~~~~p--~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 65 FKPINKKSIGVDDIRNIIEEVNKKP--YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred eccccCCCCCHHHHHHHHHHHhcCc--ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 7552 2356899999999987755 78999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHH
Q 000818 626 RCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKL 705 (1268)
Q Consensus 626 Rcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedi 705 (1268)
||+.+.|.+++.+++..||.+.+. .++++++..++.+++|++..|..++..-. ..+ ..+.+
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~----------~~~-----~~~~~ 203 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS----------LKN-----IRNMS 203 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH----------HHH-----HHHHH
Confidence 999999999999999999976543 57888899999999999988876653211 111 23578
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-------------hcccCCCHHhHHHHHHHH
Q 000818 706 LELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------------IGGRSLTEAELERLKHAL 772 (1268)
Q Consensus 706 fdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-------------~~~r~ls~~sle~L~raL 772 (1268)
+++++++..++...++..+..+...+.++..++.+|..+++|++..+.. ........++.+.|.+++
T Consensus 204 ~~~~~~l~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~ 283 (313)
T PRK05564 204 LEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMI 283 (313)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999876642 112233567788899999
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 773 KLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 773 ~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
+.+.++++.+++..++++.||.+++++..
T Consensus 284 ~~l~~~~~~l~~n~n~~l~le~lll~~~~ 312 (313)
T PRK05564 284 EIINDTRDNLSSNVNPTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHhhhc
Confidence 99999999999988999999999998753
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.47 Aligned_cols=310 Identities=23% Similarity=0.362 Sum_probs=249.4
Q ss_pred CCCccccC-cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIG-QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVG-Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
++|+.|+| |+.+++.|.+.+..++++|+|||+||+|+||+++|++||+.++|..+....||+.|..|+.+..+.++|+.
T Consensus 2 ~~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 2 MTWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 36889999 99999999999999999999999999999999999999999999887777899999999999999999998
Q ss_pred EEcCCC-CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhc
Q 000818 547 EVDGTN-KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQS 625 (1268)
Q Consensus 547 EIDaSs-~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~S 625 (1268)
.+.... ..++++|+++++.+...+ +.+++|||||||+|.|+.+++|+|||+||+||.+++|||+|+++.++++||+|
T Consensus 82 ~i~~~~~~i~id~ir~l~~~~~~~~--~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 82 LVAPDGQSIKKDQIRYLKEEFSKSG--VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred EeccccccCCHHHHHHHHHHHhhCC--cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 886543 356899999999988755 67899999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHH
Q 000818 626 RCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKL 705 (1268)
Q Consensus 626 Rcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedi 705 (1268)
||+++.|.+++.+++..+|.. +| ++.+++.+++..+ |++..|+.+++.-... . ..+.+
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~-------~--------~~~~~ 217 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGLT-NSVEEALALSEDDWFA-------Q--------ARALV 217 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHHc-CCHHHHHHHhcCchHH-------H--------HHHHH
Confidence 999999999999999888864 45 6677776777664 7899998877642211 0 01233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHHhhh------------hcccCCCHHhHHHHHH
Q 000818 706 LELLELAMSSDTAETVKRARELMDSG---VDPMVLMSQLASLIMDIIAGTYT------------IGGRSLTEAELERLKH 770 (1268)
Q Consensus 706 fdLLdAIls~D~~~ALk~LreLle~G---~dPl~ILs~La~~irDLLa~k~~------------~~~r~ls~~sle~L~r 770 (1268)
..+++.+..++....+.....+.... .....++.+|..+++|++..+.. ........++.+.|..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~ 297 (329)
T PRK08058 218 IKLYEALHEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVA 297 (329)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555544444333333211 12334677888889998866643 0111223456788999
Q ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 771 ALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 771 aL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
+++.+.++.+.++...++++.||.+++++..
T Consensus 298 ~~~~~~~~~~~l~~n~n~~L~le~lll~~~~ 328 (329)
T PRK08058 298 ALELILEAKRRLNSNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Confidence 9999999999999999999999999998753
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.29 Aligned_cols=299 Identities=22% Similarity=0.254 Sum_probs=240.7
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC---
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN--- 552 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs--- 552 (1268)
+....+.|.+++.+++++|+|||+||+|+||+++|+.||+.|.|..+....|||.|++|+.+..|.++||+.+.+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 45678899999999999999999999999999999999999999887777899999999999999999999996542
Q ss_pred CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEe
Q 000818 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632 (1268)
Q Consensus 553 ~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F 632 (1268)
..++++||++.+.+...+ ..+.+||||||++|.|+..+.|+|||+|||||++++||++|.++++|++||+|||+.+.|
T Consensus 87 ~I~idqiR~l~~~~~~~~--~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHA--RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred cCCHHHHHHHHHHHhhcc--ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccC
Confidence 367999999999998776 679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHH-HHH
Q 000818 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLEL-LEL 711 (1268)
Q Consensus 633 ~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdL-LdA 711 (1268)
.+++.+++..||.+ ...++++.+..++..++|++..|+.+++.-... .- ..++.. ...
T Consensus 165 ~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~-------~r---------~~~~~~l~~~ 223 (334)
T PRK07993 165 APPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQPERWQ-------QR---------EALCQALAYA 223 (334)
T ss_pred CCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhcCchHH-------HH---------HHHHHHHHHH
Confidence 99999999999964 224777778888999999999998887531110 00 011111 111
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh-----------cccCCCHHhHHHHHHHHHHHHHHHH
Q 000818 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-----------GGRSLTEAELERLKHALKLLSEAEK 780 (1268)
Q Consensus 712 Ils~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~-----------~~r~ls~~sle~L~raL~iLsEaDk 780 (1268)
+...+....+.. + ...+...++.++..+++|++..+... .......++...|...++.+.++.+
T Consensus 224 ~~~~~~~~~~~~---~--~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~ 298 (334)
T PRK07993 224 LPSGDWLSLLPA---L--NHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCRE 298 (334)
T ss_pred hcCCCHHHHHHH---H--cccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 112232222211 1 24566777888999999998766531 0011123466778888999999999
Q ss_pred Hhhc--cCCchHHHHHHHHHccCC
Q 000818 781 QLRL--SSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 781 qLK~--S~d~rl~LE~aLL~L~~l 802 (1268)
.|+. ..++++.||.+++++..+
T Consensus 299 ~l~~~~N~N~~L~le~lll~~~~~ 322 (334)
T PRK07993 299 QLLSVTGVNRELLLTDLLLRIEHY 322 (334)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9996 569999999999998653
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=307.77 Aligned_cols=296 Identities=21% Similarity=0.240 Sum_probs=233.9
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC--CC
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT--NK 553 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS--s~ 553 (1268)
+....+.|.+++.+++++|+|||+||+|+||+++|+.||+.++|..+....|||.|++|+.+..|.++||+.+.+. ..
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 4567788999999999999999999999999999999999999988766789999999999999999999999653 24
Q ss_pred cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEec
Q 000818 554 KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633 (1268)
Q Consensus 554 ~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~ 633 (1268)
.++++||++.+.+...+ ..+.+||||||++|.|+..++|+|||+|||||++++||++|++++++++||+|||+.+.|.
T Consensus 87 I~id~iR~l~~~~~~~~--~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 87 IGVDQVREINEKVSQHA--QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred CCHHHHHHHHHHHhhcc--ccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 57999999999998766 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHH-H
Q 000818 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL-A 712 (1268)
Q Consensus 634 pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdA-I 712 (1268)
+++.+++..||.... ..+...+..++..++|++..|+.+++.-.... -. .++..+.. +
T Consensus 165 ~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~-------r~---------~~~~~l~~~~ 223 (325)
T PRK06871 165 PPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQ-------RK---------TFLRQFWLFY 223 (325)
T ss_pred CCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHH-------HH---------HHHHHHHHHh
Confidence 999999999998753 23444566778899999988877765421110 00 11111111 1
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh------------cccCCCHHhHHHHHHHHHHHHHHHH
Q 000818 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI------------GGRSLTEAELERLKHALKLLSEAEK 780 (1268)
Q Consensus 713 ls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~------------~~r~ls~~sle~L~raL~iLsEaDk 780 (1268)
..++... .+..+ . ..+...++.+|..+++|++..+... .......++.+.|..+++.+.++.+
T Consensus 224 ~~~~~~~---~~~~~-~-k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~ 298 (325)
T PRK06871 224 RRRSPLE---LLPLF-D-KELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRS 298 (325)
T ss_pred ccCCHHH---HHHHH-h-hccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1222222 12112 1 3455667788889999998766531 0112234667889999999999999
Q ss_pred HhhccC--CchHHHHHHHHHc
Q 000818 781 QLRLSS--ERCTWFTATLLQL 799 (1268)
Q Consensus 781 qLK~S~--d~rl~LE~aLL~L 799 (1268)
.|+... |+.+.|+..|+..
T Consensus 299 ~L~~~~~iN~~L~l~~~l~~~ 319 (325)
T PRK06871 299 DLLQINAVNQELILLDGLTRL 319 (325)
T ss_pred HHHcccccCHHHHHHHHHHHH
Confidence 998765 8888888887764
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=309.68 Aligned_cols=296 Identities=20% Similarity=0.257 Sum_probs=233.6
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC---CCcChH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT---NKKGLD 557 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS---s~~gId 557 (1268)
..+.+++..++++|+|||+||+|+|||++|+.||+.++|+.+....|||.|++|+.+..|.+++++.+.+. ...+++
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id 89 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVD 89 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHH
Confidence 34555667799999999999999999999999999999988777889999999999999999999999653 346799
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEecCCCH
Q 000818 558 RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637 (1268)
Q Consensus 558 ~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~ 637 (1268)
+||++++.+...+ ..+++||||||++|.|+.+++|+|||+||+||.+++||++|++++.+++||+|||+.+.|.+++.
T Consensus 90 ~iR~l~~~~~~~~--~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 90 QVRELVSFVVQTA--QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred HHHHHHHHHhhcc--ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 9999999998765 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHHHHcCCH
Q 000818 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDT 717 (1268)
Q Consensus 638 eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdAIls~D~ 717 (1268)
+++..||.... -..+++.+..++..++|++..|+.+++.-.... ...+++.+..+..+..
T Consensus 168 ~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~----------------r~~~~~~l~~~~~~~~ 227 (328)
T PRK05707 168 EESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVREQ----------------RARVLDGVKKLLKQQQ 227 (328)
T ss_pred HHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHH----------------HHHHHHHHHHHhcCcc
Confidence 99999997643 134566677788999999999988765311100 1122222333332221
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhc-------------ccCCCHHhHHHHHHHHHHHHHHHHHhh-
Q 000818 718 AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG-------------GRSLTEAELERLKHALKLLSEAEKQLR- 783 (1268)
Q Consensus 718 ~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~-------------~r~ls~~sle~L~raL~iLsEaDkqLK- 783 (1268)
.++..+..+ .+.+...++.+|..+++|++..+.... ......++...|..+++.+.++.+.++
T Consensus 228 -~~~~~~~~~--~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~ 304 (328)
T PRK05707 228 -SASQLAESW--LKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLG 304 (328)
T ss_pred -cHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc
Confidence 223333222 245677788889999999887665310 111123466778889999999999997
Q ss_pred -ccCCchHHHHHHHHHccC
Q 000818 784 -LSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 784 -~S~d~rl~LE~aLL~L~~ 801 (1268)
...++++.||.+++++..
T Consensus 305 ~~NvN~~L~le~lll~~~~ 323 (328)
T PRK05707 305 KANLNRQLLLEALLVQWAG 323 (328)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 455899999999999865
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=304.74 Aligned_cols=302 Identities=20% Similarity=0.335 Sum_probs=246.5
Q ss_pred hhhhhhcCCCCCccccCcHHHH---HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVV---QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv---~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
.||..+.||++|+|+|||++.+ ..|.++|..+++ +.++|||||||||||+|++||+.+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l-~SmIl~GPPG~GKTTlA~liA~~~------------------ 72 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHL-HSMILWGPPGTGKTTLARLIAGTT------------------ 72 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCC-ceeEEECCCCCCHHHHHHHHHHhh------------------
Confidence 4899999999999999999999 678999999987 899999999999999999999998
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
..+|..+++.. .++.+++.+++++.... ..+++.|+||||+|+|++..|++||..+|++ .++||.+|++
T Consensus 73 ------~~~f~~~sAv~-~gvkdlr~i~e~a~~~~--~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTE 141 (436)
T COG2256 73 ------NAAFEALSAVT-SGVKDLREIIEEARKNR--LLGRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTE 141 (436)
T ss_pred ------CCceEEecccc-ccHHHHHHHHHHHHHHH--hcCCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCC
Confidence 45899999876 47999999999996554 3578899999999999999999999999997 8999999988
Q ss_pred CC--CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh--cCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Q 000818 616 ID--NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE--ENLN-----VEPDALDLIALNADGSLRDAETMLDQLSLLGK 686 (1268)
Q Consensus 616 ~e--KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk--Egi~-----Id~dALelLA~~S~GDLRdAinlLEqLsllgk 686 (1268)
.. .+.++|+|||++|.|.+++.++|...|.+.+.. .++. ++++|+++|+..++||.|.++|.||.++...+
T Consensus 142 NPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~ 221 (436)
T COG2256 142 NPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAE 221 (436)
T ss_pred CCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcC
Confidence 76 689999999999999999999999999984443 3555 78999999999999999999999999987642
Q ss_pred ---ccCHHHHHHHhccc----------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhh
Q 000818 687 ---RITSSLVNELVGVV----------SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753 (1268)
Q Consensus 687 ---~IT~edV~eLVG~v----------~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~ 753 (1268)
.++.+.+.++++.. ..+.+..|...+...|+..||.++..|++.|.||..|.+.|.....
T Consensus 222 ~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~As------- 294 (436)
T COG2256 222 PDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIAS------- 294 (436)
T ss_pred CCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------
Confidence 45588888888542 2234566677788999999999999999999999998766654322
Q ss_pred hhcccCCCHHhHHHHHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHccCCCC
Q 000818 754 TIGGRSLTEAELERLKHALKLLSEAEKQLRLS-SERCTWFTATLLQLGSMHS 804 (1268)
Q Consensus 754 ~~~~r~ls~~sle~L~raL~iLsEaDkqLK~S-~d~rl~LE~aLL~L~~lp~ 804 (1268)
+.+-..+...+..+ ++-.+.--+-| ...++.|-.+++-||.-|-
T Consensus 295 ----EDIGlAdP~Al~~a---~aa~da~~~lG~PE~~i~LAqavvyLA~aPK 339 (436)
T COG2256 295 ----EDIGLADPNALQVA---VAALDAVERLGSPEARIALAQAVVYLALAPK 339 (436)
T ss_pred ----hhccCCChhHHHHH---HHHHHHHHHhCCchHHHHHHHHHHHHHhCCc
Confidence 22233344333322 22333334444 3677888888888887443
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=301.43 Aligned_cols=288 Identities=27% Similarity=0.362 Sum_probs=227.6
Q ss_pred CCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEE
Q 000818 469 FFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEV 548 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEI 548 (1268)
.|++|+||+.+++.|.+++..++++|+|||+||+|+||+++|.+||+.++|.. +|+.|..|+ +..+.++|++.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-----~c~~c~~~~-~~~~~hPDl~~i 75 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-----SPSKNIRRR-LEEGNHPDLLWV 75 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCCcHhcc-cccCCCCCEEEE
Confidence 58999999999999999999999999999999999999999999999999975 799999998 889999999987
Q ss_pred cCCC-----------------------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 000818 549 DGTN-----------------------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605 (1268)
Q Consensus 549 DaSs-----------------------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~ 605 (1268)
.+.. ..++++||++.+.+...| +.+++||||||++|.|+..++|+|||+||+||
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p--~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp- 152 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPP--LEAPRKVVVIEDAETMNEAAANALLKTLEEPG- 152 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCc--ccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-
Confidence 6521 234789999999988765 67999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 000818 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG 685 (1268)
Q Consensus 606 ~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg 685 (1268)
+++|||+|+++++|++||+|||+++.|.+++.+++..+|.+....++... .+..++..++|+++.|++.++....
T Consensus 153 ~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~---~~~~l~~~a~Gs~~~al~~l~~~~~-- 227 (314)
T PRK07399 153 NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI---NFPELLALAQGSPGAAIANIEQLQS-- 227 (314)
T ss_pred CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh---HHHHHHHHcCCCHHHHHHHHHHHHH--
Confidence 88999999999999999999999999999999999999998765443322 2567889999999999998865421
Q ss_pred CccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhH
Q 000818 686 KRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAEL 765 (1268)
Q Consensus 686 k~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sl 765 (1268)
+..+.+..+. .+ ..+...++..... +..+.+...-+ +|..++..++...
T Consensus 228 --~~~~~~~~~~-------------~~-~~~~~~~~~~a~~-~~~~~~~e~Q~-~~l~~~~~~~~~~------------- 276 (314)
T PRK07399 228 --IPPELLQKLE-------------QP-PKSPLEALELAKD-ISEELDIEQQL-WLIDYLQQHYWQK------------- 276 (314)
T ss_pred --HHHHHHHHHH-------------hc-ccCHHHHHHHHHH-HHHhcCHHHHH-HHHHHHHHHHHHh-------------
Confidence 1112222222 11 1344444433333 33233332222 3444444443321
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 766 e~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
+....++..|.++.+++....++++.+|.++++|+.
T Consensus 277 ~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 277 TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 135667899999999999999999999999999976
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-30 Score=289.28 Aligned_cols=298 Identities=18% Similarity=0.255 Sum_probs=245.1
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
.+.-+|.+||||++|+|++||++++..|..++..+++++.|||+||+|+|||++|+++++++
T Consensus 6 ~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------------------ 67 (316)
T PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------------------ 67 (316)
T ss_pred CCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------------------
Confidence 34568999999999999999999999999999999998899999999999999999999887
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLL-PSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~L-S~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
..+++++++... .++.++..+..+....+ ..+.++||||||+|.+ ...+++.|..++++++.++.||++++
T Consensus 68 ------~~~~~~i~~~~~-~~~~i~~~l~~~~~~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 68 ------GAEVLFVNGSDC-RIDFVRNRLTRFASTVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred ------CccceEeccCcc-cHHHHHHHHHHHHHhhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 235677887763 36666665544433222 3467899999999999 66778888889999999999999999
Q ss_pred CCCCcchhhhcceeEEEecCCCHHHHHHH-------HHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc
Q 000818 615 DIDNVPRSIQSRCQKYLFNKIKDGDIVAR-------LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR 687 (1268)
Q Consensus 615 ~~eKL~pAL~SRcq~I~F~pLs~eEI~~i-------L~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~ 687 (1268)
...+++++|++||..+.|..++.++...+ +..++.++++.++++++..|+....|++|.+++.|+.++. +..
T Consensus 140 ~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~ 218 (316)
T PHA02544 140 NKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGK 218 (316)
T ss_pred ChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCC
Confidence 99999999999999999999998887654 3445667899999999999999999999999999998764 467
Q ss_pred cCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHH
Q 000818 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELER 767 (1268)
Q Consensus 688 IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~ 767 (1268)
|+.+++..+. ...++++++++...|...... +.. ..+.++..++..+...+... .....
T Consensus 219 i~~~~l~~~~----~~~~~~l~~~l~~~d~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~--------------~~~~~ 277 (316)
T PHA02544 219 IDAGILSEVT----NSDIDDVVEALKAKDFKAVRA-LAP--NYANDYASFVGKLYDELYPQ--------------VTPPS 277 (316)
T ss_pred CCHHHHHHhh----HHHHHHHHHHHHcCCHHHHHH-HHH--HhccCHHHHHHHHHHHHHHh--------------CCHHH
Confidence 9998887755 567889999998888766555 322 33778877777766544321 23457
Q ss_pred HHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 768 LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 768 L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
+.++++.+++++..+..+.++.+.||.++++++.
T Consensus 278 ~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~ 311 (316)
T PHA02544 278 IIRLIEIIGENNQYHGFAADQEIHLLYLLTQLML 311 (316)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999864
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=297.26 Aligned_cols=315 Identities=18% Similarity=0.254 Sum_probs=233.4
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCC----------CCCCcccc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTK----------PCGYCREC 534 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~----------PCg~C~sC 534 (1268)
.+|++|++|+||+.+++.|.+++..++++|+|||+||+|+||+++|..||+.|+|+.+.... +|+.|+.|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 57999999999999999999999999999999999999999999999999999997753332 38999999
Q ss_pred cccccCCCccEEEEcCC---------CCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 000818 535 NDFISGKSRNFMEVDGT---------NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaS---------s~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~ 605 (1268)
+.+..+.+++++.|... ...++++||++.+.+...+ ..++++||||||+|.|+..++|+|||+||+||.
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~--~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA--AEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc--ccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 99999999999999641 1245899999999987655 578999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 000818 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG 685 (1268)
Q Consensus 606 ~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg 685 (1268)
+++||++|++++.++++|+|||+.+.|.+++.+++..+|... +...+++++..++..++|+++.|+.+++.-..
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~~-- 244 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDGL-- 244 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccch--
Confidence 999999999999999999999999999999999999999774 33456666788999999999999998864211
Q ss_pred CccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHhhhh--ccc---
Q 000818 686 KRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD--PMVLMSQLASLIMDIIAGTYTI--GGR--- 758 (1268)
Q Consensus 686 k~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~d--Pl~ILs~La~~irDLLa~k~~~--~~r--- 758 (1268)
+.. ..++.++......+....+.....+...+.+ ...++.+|..++.|++.....- ...
T Consensus 245 -----~~~---------~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~ 310 (365)
T PRK07471 245 -----ALY---------RRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVP 310 (365)
T ss_pred -----HHH---------HHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccc
Confidence 111 1112222222222333223323223222211 3345566666666666543210 000
Q ss_pred --------CCCHHhHHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHccC
Q 000818 759 --------SLTEAELERLKHALKLLSEAEKQLR-LSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 759 --------~ls~~sle~L~raL~iLsEaDkqLK-~S~d~rl~LE~aLL~L~~ 801 (1268)
........++.+..+.|.+.-.... .+.|+++.++.+|+.|..
T Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~ 362 (365)
T PRK07471 311 GEAALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAE 362 (365)
T ss_pred hhhHHHHhhccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 0111123344444455544444444 455999999999998865
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=293.28 Aligned_cols=292 Identities=21% Similarity=0.298 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC-CCCCCCCcccccccccCCCccEEEEcCC----
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD-QTKPCGYCRECNDFISGKSRNFMEVDGT---- 551 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e-~~~PCg~C~sC~~i~sG~s~dfIEIDaS---- 551 (1268)
....+.|... .++++|+|||+||+|+||+++|+.||+.|+|..+. ...|||.|..|+.+..|.++||+.+.+.
T Consensus 7 ~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~ 84 (342)
T PRK06964 7 TDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA 84 (342)
T ss_pred HHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4455666654 57999999999999999999999999999998754 3679999999999999999999988543
Q ss_pred -------------------------CCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCc
Q 000818 552 -------------------------NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQR 606 (1268)
Q Consensus 552 -------------------------s~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~ 606 (1268)
...++++||++++.+...+ ..+++||+|||++|.|+..++|+|||+|||||.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~--~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 162 (342)
T PRK06964 85 EAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGT--HRGGARVVVLYPAEALNVAAANALLKTLEEPPPG 162 (342)
T ss_pred cccccccccccchhhcccccccccccccCHHHHHHHHHHhccCC--ccCCceEEEEechhhcCHHHHHHHHHHhcCCCcC
Confidence 1356899999999888655 6799999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Q 000818 607 VVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686 (1268)
Q Consensus 607 vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk 686 (1268)
++||++|+++++|++||+|||+.|.|.+++.+++..||... + +++. +.++..++|++..|+.+++.- .
T Consensus 163 t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~----~ 230 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDE----N 230 (342)
T ss_pred cEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCC----h
Confidence 99999999999999999999999999999999999999763 3 3332 234677899999998776431 0
Q ss_pred ccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-----------h
Q 000818 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-----------I 755 (1268)
Q Consensus 687 ~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-----------~ 755 (1268)
.+.... +++.+........+.....+. ..+...++.+|..+++|++..+.. .
T Consensus 231 ---~~~~~~------------~~~~l~~~~~~~~~~~~~~~~--k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~ 293 (342)
T PRK06964 231 ---RPLRDW------------TLGQLAAGAACDAFACAETLQ--KLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAA 293 (342)
T ss_pred ---HHHHHH------------HHHHHhccCchhHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHH
Confidence 011111 111111212222222232232 245566788888889998876653 0
Q ss_pred cccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 756 GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 756 ~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
.......++...|.++++.+.++...++...++++.||.+++++..
T Consensus 294 l~~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~ 339 (342)
T PRK06964 294 LARCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRE 339 (342)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHH
Confidence 0112234567788889999999999899888999999999998753
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=291.09 Aligned_cols=294 Identities=20% Similarity=0.292 Sum_probs=227.0
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC---
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN--- 552 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs--- 552 (1268)
+....+.|.+++..++++|+|||+||.|+||+++|+.||+.++|.... ..|||.|.+|+.+..|.++||+.+.+..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 456788999999999999999999999999999999999999998754 4799999999999999999999997642
Q ss_pred CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEe
Q 000818 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632 (1268)
Q Consensus 553 ~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F 632 (1268)
..++++||++.+.+...+ ..+++||+|||++|.|+..++|+|||+|||||.+++||++|+++++++|||+|||+.+.|
T Consensus 87 ~I~vdqiR~l~~~~~~~~--~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 87 SITVEQIRQCNRLAQESS--QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred cCCHHHHHHHHHHHhhCc--ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 357999999998887665 678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHHH
Q 000818 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELA 712 (1268)
Q Consensus 633 ~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdAI 712 (1268)
.+++.+++..||.. .++. ....++..++|++..|+.+++.-.. +.-. +.+..+.+.+
T Consensus 165 ~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~~-------~~~~--------~~~~~l~~~l 221 (319)
T PRK06090 165 TPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGGL-------EKYH--------KLERQLVDAL 221 (319)
T ss_pred CCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCcH-------HHHH--------HHHHHHHHHH
Confidence 99999999999965 3433 2346678899999999877642110 0101 1112222233
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhc-------ccCCCHHhHHHHHHHHHHHHHHHHHhhcc
Q 000818 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG-------GRSLTEAELERLKHALKLLSEAEKQLRLS 785 (1268)
Q Consensus 713 ls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~-------~r~ls~~sle~L~raL~iLsEaDkqLK~S 785 (1268)
..+. ...+.....+... ...++.+|..+++|++..+.... ...+..++...|...++.+.++.+.|...
T Consensus 222 ~~~~-~~~~~~a~~~~~~---~~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~L~~~ 297 (319)
T PRK06090 222 SGPV-SDQLKCASLIAAD---PLTHLSWLWLLLTDAQKVHFGVQNEYYLPGSAALGPFTYSGLYVSTAKLERLKEQLQQF 297 (319)
T ss_pred hcCc-ccHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc
Confidence 3332 2333333333221 23366778888889887665310 11123346667778899999999999865
Q ss_pred C--CchHHHHHHHHHc
Q 000818 786 S--ERCTWFTATLLQL 799 (1268)
Q Consensus 786 ~--d~rl~LE~aLL~L 799 (1268)
. +..+.++..|+..
T Consensus 298 ~~ln~elll~~lll~~ 313 (319)
T PRK06090 298 SGLNTELLIMNWLIES 313 (319)
T ss_pred cccCHHHHHHHHHHHH
Confidence 4 7778888888765
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=289.47 Aligned_cols=214 Identities=21% Similarity=0.360 Sum_probs=191.8
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhccc-----CC-CCCCCCCcccccc
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-----TD-QTKPCGYCRECND 536 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~-----~e-~~~PCg~C~sC~~ 536 (1268)
...+|..|++|+||++++..|..++..++++|+|||+||+|+|||++|+.||+.|+|.. +. ...||+.|+.|+.
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999942 22 2359999999999
Q ss_pred cccCCCccEEEEcCC---------CCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcE
Q 000818 537 FISGKSRNFMEVDGT---------NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRV 607 (1268)
Q Consensus 537 i~sG~s~dfIEIDaS---------s~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~v 607 (1268)
+..+.+++++.+... ...++++||.+.+.+...+ ..++++||||||+|.|+..++|+||++||+||.++
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~--~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS--GDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc--ccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 999999999877522 1245899999998887654 57899999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 000818 608 VFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680 (1268)
Q Consensus 608 VfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEq 680 (1268)
+||++|+.+.+++++|+|||+.+.|.+++.+++..||...+...+ ++++++..|+..++|++|.|+++++.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999998654444 77999999999999999999999865
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=298.62 Aligned_cols=284 Identities=21% Similarity=0.308 Sum_probs=239.7
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHH---cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTIS---RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIk---sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
..|++||||++|+||+||+.++..|..|+. .|++.+++||+||||+|||++|++||+.+
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------------------ 63 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------------------ 63 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------------------
Confidence 479999999999999999999999999987 45667899999999999999999999998
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHcCCCCcEEEEE
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS----KTWLAFLKFLEEPPQRVVFIF 611 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~----ea~naLLK~LEepp~~vVfIL 611 (1268)
+.+++++++++....+.++.++..+....+.+...++||||||+|.|+. ..+++|+++++.. ...||+
T Consensus 64 ------~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIl 135 (482)
T PRK04195 64 ------GWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIIL 135 (482)
T ss_pred ------CCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEE
Confidence 3578899998877778888888777654433223789999999999976 5689999999965 456788
Q ss_pred EeCCCCCcch-hhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCH
Q 000818 612 ITTDIDNVPR-SIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITS 690 (1268)
Q Consensus 612 aTn~~eKL~p-AL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~ 690 (1268)
++|++..+.. +|++||..+.|.+++..++..+|..++..+++.+++++++.|+..++||+|.|++.|+.++...+.|+.
T Consensus 136 i~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~ 215 (482)
T PRK04195 136 TANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTL 215 (482)
T ss_pred eccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcH
Confidence 8998887776 899999999999999999999999999999999999999999999999999999999996655678999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHH
Q 000818 691 SLVNELVGVVSEEKLLELLELAMS-SDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLK 769 (1268)
Q Consensus 691 edV~eLVG~v~eedifdLLdAIls-~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~ 769 (1268)
++|..++....+.++|+++++++. ++...++..+ ....++|..++.+|...+... ..+++.+.
T Consensus 216 ~~v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~~---~~~~~~~~~i~~~l~en~~~~-------------~~~~~~~~ 279 (482)
T PRK04195 216 EDVKTLGRRDREESIFDALDAVFKARNADQALEAS---YDVDEDPDDLIEWIDENIPKE-------------YDDPEDIA 279 (482)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHHH---HcccCCHHHHHHHHHhccccc-------------cCCHHHHH
Confidence 999988877778899999999997 6777666544 345688888887777654311 12457889
Q ss_pred HHHHHHHHHHHHhhc
Q 000818 770 HALKLLSEAEKQLRL 784 (1268)
Q Consensus 770 raL~iLsEaDkqLK~ 784 (1268)
++++.|+++|.-+..
T Consensus 280 ~a~~~ls~ad~~~~~ 294 (482)
T PRK04195 280 RAYDALSRADIFLGR 294 (482)
T ss_pred HHHHHHhHHHHHHHH
Confidence 999999999987643
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=306.77 Aligned_cols=274 Identities=22% Similarity=0.342 Sum_probs=244.6
Q ss_pred EEEEc--CCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC
Q 000818 496 YLFQG--PRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 496 yLL~G--PpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~ 573 (1268)
.++.| |.+.||||+|++||+.+.+.. ...+|+++|+++.++++.|+++++.+....+..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~-------------------~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~ 627 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN-------------------WRHNFLELNASDERGINVIREKVKEFARTKPIG 627 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc-------------------ccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC
Confidence 36678 999999999999999985321 156899999999899999999998876544332
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCC
Q 000818 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENL 653 (1268)
Q Consensus 574 ~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi 653 (1268)
..+++||||||+|+|+..++++|+++||+|+.+++||++||++.+++++|+|||+.|.|.+++.+++..+|..+|.++++
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC
Q 000818 654 NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELM-DSGV 732 (1268)
Q Consensus 654 ~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLl-e~G~ 732 (1268)
.++++++..|+..++||+|.|+++|+.++.....||.++|..+.+....+.++++++.++.++...+...+++++ ..|.
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~ 787 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGL 787 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988778899999999999999999999999999999999999999987 7999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 733 DPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 733 dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
++..++..|...+.+. . .+.....+++..+++++..+..|.++.+-|+.++.+++.
T Consensus 788 ~~~~iL~~l~~~l~~~----------~---i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~ 843 (846)
T PRK04132 788 SGEDVLVQMHREVFNL----------P---IDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTL 843 (846)
T ss_pred CHHHHHHHHHHHHHhc----------C---CCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999998888766421 1 122334567899999999999999999999999999864
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=286.39 Aligned_cols=256 Identities=25% Similarity=0.393 Sum_probs=217.1
Q ss_pred hhhhhcCCCCCccccCcHHHHHH---HHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQS---LVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~t---Lk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
||++||||.+|+|+|||++++.. |.+++..+++ +++||+||+|||||++|++||+.+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~-~~ilL~GppGtGKTtLA~~ia~~~------------------- 60 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRL-SSMILWGPPGTGKTTLARIIAGAT------------------- 60 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCC-ceEEEECCCCCCHHHHHHHHHHHh-------------------
Confidence 69999999999999999999876 9999988875 688999999999999999999987
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+..|+++++.. .+++.++.+++.+.... ..++++||||||+|.|+...++.|++++|+. .++||++|+..
T Consensus 61 -----~~~~~~l~a~~-~~~~~ir~ii~~~~~~~--~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n 130 (413)
T PRK13342 61 -----DAPFEALSAVT-SGVKDLREVIEEARQRR--SAGRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTEN 130 (413)
T ss_pred -----CCCEEEEeccc-ccHHHHHHHHHHHHHhh--hcCCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCC
Confidence 34677887764 46788888888876432 2457889999999999999999999999985 67777777654
Q ss_pred --CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHH
Q 000818 617 --DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE--NL-NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS 691 (1268)
Q Consensus 617 --eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkE--gi-~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~e 691 (1268)
..+.++|++||+++.|.+++.+++..+|.+++... ++ .+++++++.|++.++||+|.+++.|+.++..+..|+.+
T Consensus 131 ~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~ 210 (413)
T PRK13342 131 PSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLE 210 (413)
T ss_pred hhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHH
Confidence 37899999999999999999999999999988763 54 89999999999999999999999999988777889999
Q ss_pred HHHHHhcccc------hHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 000818 692 LVNELVGVVS------EEKLLE----LLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745 (1268)
Q Consensus 692 dV~eLVG~v~------eedifd----LLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~i 745 (1268)
+|.++++... .+..++ +.+.+...|...++.++..|++.|++|..|++.|....
T Consensus 211 ~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 211 LLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999987431 123444 45555669999999999999999999999987776543
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=279.22 Aligned_cols=292 Identities=21% Similarity=0.224 Sum_probs=228.5
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc--CCC-
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD--GTN- 552 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID--aSs- 552 (1268)
|..+++.|..++..++++|+|||+||+|+||+++|..||+.+.|..+ .+|+.|..|+.+..|.++||+.+. +..
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~---~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP---DPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC---CCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 57788999999999999999999999999999999999999999653 468899999999999999999984 321
Q ss_pred ------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcc
Q 000818 553 ------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626 (1268)
Q Consensus 553 ------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SR 626 (1268)
..++++||++.+.+...+ ..+++||||||++|.|+..++|+|||+|||||.+++||++|+++++|++||+||
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p--~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTP--QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCc--ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 245899999999998766 568999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHH
Q 000818 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLL 706 (1268)
Q Consensus 627 cq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedif 706 (1268)
|+.+.|.+++.+++..||.. .+ +++..+..++..++|++..|+.+++.-... . ...++
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~-------~---------r~~~~ 221 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGLA-------L---------RRAVA 221 (319)
T ss_pred heEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchHH-------H---------HHHHH
Confidence 99999999999999999974 23 566666677899999999998776431110 0 01112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHHHHHhhccC
Q 000818 707 ELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786 (1268)
Q Consensus 707 dLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEaDkqLK~S~ 786 (1268)
..+..+..+.. .++.....+...+. + .++..+++|++..+.. ...........|.+..+.|.+.-..+..+.
T Consensus 222 ~~l~~~~~~~~-~~~~~a~~~~~~~~-~----~~l~~~~~Dll~~~~~--~~~~~~~~~~~L~~~~~~l~~~~~~~~~~l 293 (319)
T PRK08769 222 QDLEQIASGRA-GAVDVAQRWTNDGQ-A----DQRLRHAADLALAQAS--AGLTDPSRLHKLATWFDAANRTRDLLRTTV 293 (319)
T ss_pred HHHHHhccCcc-cHHHHHHHHccCCc-H----HHHHHHHHHHHHHhcC--CcccChhhHHHHHHHHHHHHHHHHhccCCC
Confidence 22222222222 24444444333221 1 5777788888876652 111112256778888888888888899888
Q ss_pred CchHHHHHHHHHccCC
Q 000818 787 ERCTWFTATLLQLGSM 802 (1268)
Q Consensus 787 d~rl~LE~aLL~L~~l 802 (1268)
|+++.+|.+|+.+...
T Consensus 294 N~~L~le~lll~~~~~ 309 (319)
T PRK08769 294 RADLAVTELLLAWREG 309 (319)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998653
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=275.72 Aligned_cols=292 Identities=20% Similarity=0.287 Sum_probs=228.4
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCC-CCCCCCcccccccccCCCccEEEEcCCC--
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ-TKPCGYCRECNDFISGKSRNFMEVDGTN-- 552 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~-~~PCg~C~sC~~i~sG~s~dfIEIDaSs-- 552 (1268)
+....+.|... .++++|+|||+||+|+|||++|+.||+.++|..+.. ..|||.|++|+.+..|.++||+++.+..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 44556666655 579999999999999999999999999999987643 4699999999999999999999998642
Q ss_pred --------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhh
Q 000818 553 --------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQ 624 (1268)
Q Consensus 553 --------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~ 624 (1268)
..++++||++++.+...+ ..+++||||||+++.|...++++|+++||+++.+++||++|.+++.++++|+
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p--~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTS--VRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCc--ccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH
Confidence 247999999999998765 5789999999999999999999999999999988999999999999999999
Q ss_pred cceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHH
Q 000818 625 SRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEK 704 (1268)
Q Consensus 625 SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eed 704 (1268)
|||+.+.|.+++.+++..||.+ .++.... + .+ ..++|.+..+.. +...+. .
T Consensus 162 SRc~~~~~~~~~~~~~~~~L~~----~~~~~~~-~--~l-~~~~g~p~~~~~--------------~~~~~~-----r-- 212 (325)
T PRK08699 162 SRCRKMVLPAPSHEEALAYLRE----RGVAEPE-E--RL-AFHSGAPLFDEE--------------PELRAL-----R-- 212 (325)
T ss_pred HHhhhhcCCCCCHHHHHHHHHh----cCCCcHH-H--HH-HHhCCChhhhcC--------------chHHHH-----H--
Confidence 9999999999999999999965 2443221 2 23 345676532210 011110 0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-----------hcccCCCHHhHHHHHHHHH
Q 000818 705 LLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-----------IGGRSLTEAELERLKHALK 773 (1268)
Q Consensus 705 ifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-----------~~~r~ls~~sle~L~raL~ 773 (1268)
-.+++.+...+....+..+..+...+.+...++.+|..+++|++..+.. ........++...|.++++
T Consensus 213 -~~~~~~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~~~~~~~L~~~~~ 291 (325)
T PRK08699 213 -IKLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASGFRPRNVFAAED 291 (325)
T ss_pred -HHHHHHHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHHhcCHHHHHHHHH
Confidence 1223334455555666666666666778888999999999999876643 0111223456778889999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHccC
Q 000818 774 LLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 774 iLsEaDkqLK~S~d~rl~LE~aLL~L~~ 801 (1268)
.+.++...++...++++.||.+++++..
T Consensus 292 ~l~~~~~~l~~n~n~~L~le~lll~~~~ 319 (325)
T PRK08699 292 MLKQLAPYGFHTLNVKMQIEHLLINYLE 319 (325)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=291.17 Aligned_cols=260 Identities=20% Similarity=0.342 Sum_probs=216.7
Q ss_pred hchhhhhhcCCCCCccccCcHHHH---HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVV---QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv---~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
...||.+||||++|+|++||++++ ..|.+++..+++ +++|||||||||||++|+++++.+.
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~-~slLL~GPpGtGKTTLA~aIA~~~~--------------- 77 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRV-GSLILYGPPGVGKTTLARIIANHTR--------------- 77 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCC-ceEEEECCCCCCHHHHHHHHHHHhc---------------
Confidence 345899999999999999999998 468888888886 6789999999999999999998873
Q ss_pred ccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEe
Q 000818 534 CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaT 613 (1268)
..|+++++.. .++..++++++.+..... ..+.+.||||||+|.|+...+++|++++|+. .++||++|
T Consensus 78 ---------~~f~~lna~~-~~i~dir~~i~~a~~~l~-~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aT 144 (725)
T PRK13341 78 ---------AHFSSLNAVL-AGVKDLRAEVDRAKERLE-RHGKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGAT 144 (725)
T ss_pred ---------Ccceeehhhh-hhhHHHHHHHHHHHHHhh-hcCCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEec
Confidence 2456666653 356667777766532211 2356789999999999999999999999985 67788877
Q ss_pred CCCC--CcchhhhcceeEEEecCCCHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000818 614 TDID--NVPRSIQSRCQKYLFNKIKDGDIVARLRKISA-------EENLNVEPDALDLIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 614 n~~e--KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiak-------kEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll 684 (1268)
+... .+.++++|||.+|.|.+++.+++..+|++++. .+++.++++++++|+..++||+|.+++.|+.++..
T Consensus 145 Tenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~ 224 (725)
T PRK13341 145 TENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVES 224 (725)
T ss_pred CCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 6553 68899999999999999999999999999987 56789999999999999999999999999998653
Q ss_pred C-----C--ccCHHHHHHHh----------cccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 000818 685 G-----K--RITSSLVNELV----------GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745 (1268)
Q Consensus 685 g-----k--~IT~edV~eLV----------G~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~i 745 (1268)
. + .||.+.+.+++ |....+.+..|++.+..+|..+|+.++..|++.|+||..|++.|....
T Consensus 225 ~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 225 TPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred cccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 1 27888887765 345668899999999999999999999999999999999887766543
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=264.50 Aligned_cols=284 Identities=20% Similarity=0.317 Sum_probs=209.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-C
Q 000818 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-K 553 (1268)
Q Consensus 475 GQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-~ 553 (1268)
.|+.+++.|.+++..++++|+|||+|| +||+++|+.||+.++|.......|||.|.+|+.+..|.++||+.+.+.. .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 488999999999999999999999996 6899999999999999987777899999999999999999999998654 3
Q ss_pred cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEec
Q 000818 554 KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633 (1268)
Q Consensus 554 ~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~ 633 (1268)
.++++||++++.+...| ..+.+||||||++|.|+..++|+|||+|||||.+++||++|+++++++|||+|||+.|.|.
T Consensus 84 I~idqIR~l~~~~~~~p--~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~ 161 (290)
T PRK07276 84 IKTDTIRELVKNFSQSG--YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFP 161 (290)
T ss_pred CCHHHHHHHHHHHhhCc--ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCC
Confidence 57899999999998765 6799999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHHHH
Q 000818 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAM 713 (1268)
Q Consensus 634 pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdAIl 713 (1268)
+ ..+++..+|. ++| ++.+....++..+ |++..|+.+++.-... ++ .+.+..+++.+.
T Consensus 162 ~-~~~~~~~~L~----~~g--~~~~~a~~la~~~-~s~~~A~~l~~~~~~~----------~~-----~~~~~~~~~~l~ 218 (290)
T PRK07276 162 K-NEAYLIQLLE----QKG--LLKTQAELLAKLA-QSTSEAEKLAQNKKFL----------EL-----IDQAERFVTILL 218 (290)
T ss_pred C-cHHHHHHHHH----HcC--CChHHHHHHHHHC-CCHHHHHHHhCChhHH----------HH-----HHHHHHHHHHhc
Confidence 6 6777777774 355 4455555566555 5798888876321111 00 011122222222
Q ss_pred cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHH
Q 000818 714 SSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFT 793 (1268)
Q Consensus 714 s~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE 793 (1268)
..+ ..++..+..++....+..... ++..++..++..+ +..+.+...|..+.++.+.....-+.+..||
T Consensus 219 ~~~-~~~~l~~~~l~~~~~~~e~q~-~~l~~l~~~~~~~----------~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le 286 (290)
T PRK07276 219 KDK-DEAYLQVARLVQLADEKEEQD-QVLTLLTLLLAQE----------RMQVNVRTQLEAVYQARKMWQSNVSFQNALE 286 (290)
T ss_pred cCh-HHHHHHHHHHHHhhhcHHHHH-HHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHhccCHHHHHH
Confidence 222 122222233333222222211 1111111122111 1225677778889999999998889999999
Q ss_pred HHHH
Q 000818 794 ATLL 797 (1268)
Q Consensus 794 ~aLL 797 (1268)
.++|
T Consensus 287 ~l~l 290 (290)
T PRK07276 287 YMVL 290 (290)
T ss_pred HHhC
Confidence 8764
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=263.84 Aligned_cols=265 Identities=25% Similarity=0.383 Sum_probs=225.7
Q ss_pred hhchhhhhhcCCCCCccccCcHHHH---HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVV---QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv---~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
-.+.||.++.||++++|.|||++++ ..|...|+++++ |.++||||||||||++|+.|+..-.
T Consensus 123 ~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~i-pSmIlWGppG~GKTtlArlia~tsk-------------- 187 (554)
T KOG2028|consen 123 LQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRI-PSMILWGPPGTGKTTLARLIASTSK-------------- 187 (554)
T ss_pred hccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCC-CceEEecCCCCchHHHHHHHHhhcC--------------
Confidence 4566999999999999999999998 558889999998 8899999999999999999987652
Q ss_pred cccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEE
Q 000818 533 ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFI 612 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILa 612 (1268)
..+..|+++.+.. .++.++|.+++....... +..++.|+||||+|++.+..++.||..+|.+ .+.||.+
T Consensus 188 -------~~SyrfvelSAt~-a~t~dvR~ife~aq~~~~-l~krkTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGA 256 (554)
T KOG2028|consen 188 -------KHSYRFVELSATN-AKTNDVRDIFEQAQNEKS-LTKRKTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGA 256 (554)
T ss_pred -------CCceEEEEEeccc-cchHHHHHHHHHHHHHHh-hhcceeEEEeHHhhhhhhhhhhcccceeccC--ceEEEec
Confidence 1146789998876 458899999999876543 5678889999999999999999999999987 8999999
Q ss_pred eCCCC--CcchhhhcceeEEEecCCCHHHHHHHHHHHHH----hc---------CCCCCHHHHHHHHHHcCCCHHHHHHH
Q 000818 613 TTDID--NVPRSIQSRCQKYLFNKIKDGDIVARLRKISA----EE---------NLNVEPDALDLIALNADGSLRDAETM 677 (1268)
Q Consensus 613 Tn~~e--KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiak----kE---------gi~Id~dALelLA~~S~GDLRdAinl 677 (1268)
|++.. .|..+|+|||.+|.+.+++.+++..+|.+... .+ -+.+++.++++|+..++||.|.|+|.
T Consensus 257 TTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~ 336 (554)
T KOG2028|consen 257 TTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA 336 (554)
T ss_pred ccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 98875 68899999999999999999999999987433 11 13478899999999999999999999
Q ss_pred HHHHHHh-----C----CccCHHHHHHHh----------cccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHH
Q 000818 678 LDQLSLL-----G----KRITSSLVNELV----------GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLM 738 (1268)
Q Consensus 678 LEqLsll-----g----k~IT~edV~eLV----------G~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~IL 738 (1268)
|+..... + ..|+.++|++.+ |....+.|..|-..+..+|...+|.+|..|++.|++|+++.
T Consensus 337 Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVA 416 (554)
T KOG2028|consen 337 LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVA 416 (554)
T ss_pred HHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHH
Confidence 9987321 2 279999998876 34455678888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000818 739 SQLASLIM 746 (1268)
Q Consensus 739 s~La~~ir 746 (1268)
+.|+++.-
T Consensus 417 RRlvR~AS 424 (554)
T KOG2028|consen 417 RRLVRFAS 424 (554)
T ss_pred HHHHHHhh
Confidence 88877543
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=255.90 Aligned_cols=228 Identities=34% Similarity=0.519 Sum_probs=191.2
Q ss_pred ccccCcHHHHHHHHHHHH-cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc
Q 000818 471 DELIGQNIVVQSLVNTIS-RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD 549 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIk-sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID 549 (1268)
+++++++.++..+..++. .++++|+|||+||+|+|||++|.+||+.+.|..+....+|..|..|..+..+.+.+|++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 468899999999888887 6778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcC----hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhc
Q 000818 550 GTNKKG----LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQS 625 (1268)
Q Consensus 550 aSs~~g----Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~S 625 (1268)
+++.++ ++.|+++.+.....+ ..+++|||||||+|.|+.+++|+|++++|+|+.+++||++|+.+.+++++|+|
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~--~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S 158 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP--LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS 158 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC--CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh
Confidence 988665 566777777766543 35899999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchH--
Q 000818 626 RCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEE-- 703 (1268)
Q Consensus 626 Rcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~ee-- 703 (1268)
||+++.|.+++......++ + ++++..++..+.||+|.+++.|+.++.. .+....+.+.+......
T Consensus 159 Rc~~i~f~~~~~~~~i~~~------e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~--~~~~~~~~~~~~~~~~~~~ 225 (325)
T COG0470 159 RCQRIRFKPPSRLEAIAWL------E-----DQGLEEIAAVAEGDARKAINPLQALAAL--EIGEESIYEALLLALPESL 225 (325)
T ss_pred cceeeecCCchHHHHHHHh------h-----ccchhHHHHHHHHHHHcCCCHHHHHHHh--cccHHHHHHHHHhhChhhc
Confidence 9999999995544444333 3 6778889999999999999999998876 23444454444433333
Q ss_pred ---HHHHHHHHHH
Q 000818 704 ---KLLELLELAM 713 (1268)
Q Consensus 704 ---difdLLdAIl 713 (1268)
...+++..+.
T Consensus 226 ~~~~~~~~~~~~~ 238 (325)
T COG0470 226 AQLAALELLKLAE 238 (325)
T ss_pred ccccHHHHHHHHH
Confidence 5555555544
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=244.61 Aligned_cols=186 Identities=30% Similarity=0.515 Sum_probs=170.2
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-CcChHHH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-KKGLDRV 559 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-~~gId~I 559 (1268)
+.|.+.+..++++++||||||+|+|||++|+.|++.+.|.......||+.|..|..+..+.++++..+.... ..+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 468889999999999999999999999999999999999877778999999999999999988888776533 3568999
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHH
Q 000818 560 RYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639 (1268)
Q Consensus 560 ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eE 639 (1268)
+++++.+...+ +.+.++||||||+|.|+..++++|+++||+++.+++|||+++++.+++++|++||+.+.|.+++.++
T Consensus 82 ~~i~~~~~~~~--~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~ 159 (188)
T TIGR00678 82 RELVEFLSRTP--QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEA 159 (188)
T ss_pred HHHHHHHccCc--ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHH
Confidence 99999988765 6789999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHH
Q 000818 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDA 674 (1268)
Q Consensus 640 I~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdA 674 (1268)
+..||.+. | ++++++++|+..++|++|.|
T Consensus 160 ~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 160 LLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999875 4 88999999999999999864
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=240.66 Aligned_cols=159 Identities=36% Similarity=0.665 Sum_probs=135.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC-
Q 000818 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK- 553 (1268)
Q Consensus 475 GQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~- 553 (1268)
||+.+++.|.+++..++++|+|||+||+|+||+++|+.||+.++|...... ||+.|..|..+..+.++|++.++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHHHHHhccCcceEEEeccccc
Confidence 899999999999999999999999999999999999999999999877655 999999999999999999999987653
Q ss_pred --cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEE
Q 000818 554 --KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631 (1268)
Q Consensus 554 --~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~ 631 (1268)
.++++++++++.+...+ ..+.+|||||||+|.|+.+++|+|||+||+||.+++|||+|+++.+|++||+|||+.|.
T Consensus 80 ~~i~i~~ir~i~~~~~~~~--~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~ 157 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSP--SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIR 157 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS---TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEE
T ss_pred chhhHHHHHHHHHHHHHHH--hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEe
Confidence 57899999999987655 56899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 000818 632 FNKIK 636 (1268)
Q Consensus 632 F~pLs 636 (1268)
|.+++
T Consensus 158 ~~~ls 162 (162)
T PF13177_consen 158 FRPLS 162 (162)
T ss_dssp E----
T ss_pred cCCCC
Confidence 99874
|
... |
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=242.05 Aligned_cols=323 Identities=20% Similarity=0.278 Sum_probs=247.5
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCC---CCCcccc--
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKP---CGYCREC-- 534 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~P---Cg~C~sC-- 534 (1268)
-|.+||||++|+.++++++....|+.....+.+ |++|||||.|.||.|.+.++.+++...+.+.-+- -...++-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 399999999999999999999999888876766 8899999999999999999999997644322110 0001111
Q ss_pred cccccCCCccEEEEcCCCCcChHH--HHHHHHHHHcCCCC---CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEE
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDR--VRYILKHLSAGLPS---ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVF 609 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~--IReLIEea~~~pp~---~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVf 609 (1268)
..+..-.+...+|+++++....|+ |.++++++.+..+. ....+|||+|-|+|.|+.+++.+|.++||.+..++.+
T Consensus 81 lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 122222355677888887544554 57888888765432 3467999999999999999999999999999999999
Q ss_pred EEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccC
Q 000818 610 IFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRIT 689 (1268)
Q Consensus 610 ILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT 689 (1268)
|+++|...++.++|+|||..+..+.|+++|+...|.+++++|++.++.+.+..|++.++||+|.|+-+||.+.......+
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976643322
Q ss_pred HHHHHHHhcccch-HHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHh
Q 000818 690 SSLVNELVGVVSE-EKLLELLELAMSSDTAE----TVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE 764 (1268)
Q Consensus 690 ~edV~eLVG~v~e-edifdLLdAIls~D~~~----ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~s 764 (1268)
..- ..+....- ..+-++...++..+... ....+++|+.+++.|..|+..|...+.. ..+
T Consensus 241 a~~--~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--------------~~d 304 (351)
T KOG2035|consen 241 ANS--QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--------------KCD 304 (351)
T ss_pred ccC--CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--------------cCC
Confidence 221 00111111 12344555555555443 4457788999999999999888775442 122
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHc
Q 000818 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799 (1268)
Q Consensus 765 le~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L 799 (1268)
.+.-...++.-+..|.+++.|.-.-+-||.++.+.
T Consensus 305 ~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~f 339 (351)
T KOG2035|consen 305 TQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKF 339 (351)
T ss_pred chhHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 22333456778889999999887778889888764
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=251.14 Aligned_cols=260 Identities=17% Similarity=0.228 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC---C
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN---K 553 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs---~ 553 (1268)
....+.|.+++..++++|+|||+||+|+||+.+|..||+.++|.... ..|..+..+.++|++.+.+.. .
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~--------~~c~~~~~~~HPD~~~i~p~~~~~~ 74 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSP--------EAAYKISQKIHPDIHEFSPQGKGRL 74 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc--------cHHHHHhcCCCCCEEEEecCCCCCc
Confidence 45678999999999999999999999999999999999999996421 247888899999999986543 2
Q ss_pred cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEec
Q 000818 554 KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633 (1268)
Q Consensus 554 ~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~ 633 (1268)
.+++++|++.+.+...| ..+.+||+|||++|.|+.+++|+|||+||+||.+++||++|+++++++|||+|||+.+.|.
T Consensus 75 I~idqiR~l~~~~~~~p--~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~ 152 (290)
T PRK05917 75 HSIETPRAIKKQIWIHP--YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIP 152 (290)
T ss_pred CcHHHHHHHHHHHhhCc--cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEcc
Confidence 47999999999998876 6799999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHH--HHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHH
Q 000818 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRD--AETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711 (1268)
Q Consensus 634 pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRd--AinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdA 711 (1268)
++ +...++++.+..++..++|++.. +...++. . .+...... .+.
T Consensus 153 ~~---------------~~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~----~----~~~~~~~~----re~------- 198 (290)
T PRK05917 153 ME---------------EKTLVSKEDIAYLIGYAQGKESVTEVGQIVKG----S----ADTDKQVL----RDK------- 198 (290)
T ss_pred ch---------------hccCCCHHHHHHHHHHhCCChhHHHHHHHHhc----c----hHHHHHHH----HHH-------
Confidence 86 12247899999999999999862 2222211 0 00000000 111
Q ss_pred HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhccc---------CCCHHhHHHHHHHHHHHHHHHHHh
Q 000818 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR---------SLTEAELERLKHALKLLSEAEKQL 782 (1268)
Q Consensus 712 Ils~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r---------~ls~~sle~L~raL~iLsEaDkqL 782 (1268)
-..++..+..+|||++..+...... .+..+....|..+++.+.++.+.|
T Consensus 199 ----------------------~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~~~~~~l~~~i~~i~~a~~~l 256 (290)
T PRK05917 199 ----------------------TKAMLEVLLQLFRDRFLLALKVPASALAYPDLLKEILTLPVLPLEKVLSIIERAVQAL 256 (290)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1223344555555555443320000 000011122667899999999999
Q ss_pred hccCCchHHHHHHHHHccCC
Q 000818 783 RLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 783 K~S~d~rl~LE~aLL~L~~l 802 (1268)
+...++++.||.++++|..+
T Consensus 257 ~~N~N~~l~le~l~l~l~~~ 276 (290)
T PRK05917 257 DNSSSAPSCLEWVALQLWSL 276 (290)
T ss_pred HhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999998653
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=247.40 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=238.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~ 573 (1268)
++|||||+...-+...++.+.+.+.... ...+++.++++.+ .+.+..+++++...| +
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~------------------~~~fn~~~~d~~~---~~~~~~~~~~~~t~p--f 58 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPE------------------WKSFNYSRLDGDD---ADQAIQALNEAMTPP--F 58 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCch------------------hhhcchhhcCCcc---chHHHHHHHHhcCCC--C
Confidence 7899999998777777777776653111 1245778888765 244678888876544 8
Q ss_pred CCCcEEEEEeCCCCC---CHHHHHHHHHHHcCCCCcEEEEEEeC-CCC---CcchhhhcceeEEEecCC---CHHHHHHH
Q 000818 574 SPRFKVFVIDECHLL---PSKTWLAFLKFLEEPPQRVVFIFITT-DID---NVPRSIQSRCQKYLFNKI---KDGDIVAR 643 (1268)
Q Consensus 574 ~g~~KVIIIDEaD~L---S~ea~naLLK~LEepp~~vVfILaTn-~~e---KL~pAL~SRcq~I~F~pL---s~eEI~~i 643 (1268)
+++++||+|++++.+ ..+..+.|..+++.+|+++++|+++. .++ ++...+...+.+..|.++ ..+++..|
T Consensus 59 f~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~ 138 (326)
T PRK07452 59 GSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQL 138 (326)
T ss_pred CCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHH
Confidence 899999999998765 56778899999999988999988754 332 466778888888888766 45679999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCccCHHHHHHHhcccchHHHHHHHHHHHcCCHHH
Q 000818 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL----GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAE 719 (1268)
Q Consensus 644 L~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll----gk~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ 719 (1268)
|+..+++.|+.|+++|+++|+..+++|++.+.++|++|+++ ++.||.++|.+++... ++++|+|+++++.++...
T Consensus 139 i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~ 217 (326)
T PRK07452 139 VERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGK 217 (326)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999987 3479999999999876 689999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------------------hcccCCCHHhHHHHHHHHHHH
Q 000818 720 TVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------------------IGGRSLTEAELERLKHALKLL 775 (1268)
Q Consensus 720 ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------------------~~~r~ls~~sle~L~raL~iL 775 (1268)
|+..++.|+..|++|+.|+..|.++|+.++..+.. +..++++.++.+.|.+++..|
T Consensus 218 A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L 297 (326)
T PRK07452 218 ALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLL 297 (326)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999987655431 112345678888999999999
Q ss_pred HHHHHHhhccCCchHHHHHHHHHccCC
Q 000818 776 SEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 776 sEaDkqLK~S~d~rl~LE~aLL~L~~l 802 (1268)
.++|.++|++.++...||.+++++|.+
T Consensus 298 ~~~D~~iK~g~~~~~~le~~i~~~~~~ 324 (326)
T PRK07452 298 LDLEASLKQGANPINALQDKLIELCQL 324 (326)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 999999999998888999999999975
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=251.58 Aligned_cols=313 Identities=20% Similarity=0.280 Sum_probs=262.1
Q ss_pred hhhchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 455 ~~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
.....+|.+||||.+++|+++|+.++.++.+.+..+++ |++|||||||||||+.+.+.|+.|.|..
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~------------- 90 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-PHLLFYGPPGTGKTSTILANARDFYSPH------------- 90 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCC-CcccccCCCCCCCCCchhhhhhhhcCCC-------------
Confidence 44567999999999999999999999999999888887 5899999999999999999999996521
Q ss_pred cccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCC--CCCCC--CcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEE
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL--PSASP--RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~p--p~~~g--~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfI 610 (1268)
+...-+.++++++.+|++-++.-+..+.... ..+.. .+|+||+||+|.++.+++|+|.+.+|....++.|+
T Consensus 91 -----~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 91 -----PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred -----CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEE
Confidence 1134577899999999998888777665443 22333 79999999999999999999999999999999999
Q ss_pred EEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Q 000818 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---- 686 (1268)
Q Consensus 611 LaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk---- 686 (1268)
+++|.+.++.+++++||..|.|.+++..++..++..+++.+.+.++++....++..+.||+|.|+|.|+.+...-.
T Consensus 166 ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e 245 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKE 245 (360)
T ss_pred EeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred -ccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHh
Q 000818 687 -RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE 764 (1268)
Q Consensus 687 -~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLl-e~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~s 764 (1268)
.+..++|....|.....++-.+++.++.....++...+.++. ..|.+-..++..|..++..+.. ..
T Consensus 246 ~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~----------~~-- 313 (360)
T KOG0990|consen 246 LNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVIS----------KT-- 313 (360)
T ss_pred CCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhc----------ch--
Confidence 355666999999999999999999999999888877777775 5677777777776665553321 11
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHc
Q 000818 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799 (1268)
Q Consensus 765 le~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L 799 (1268)
+...+++.-+.++++.+-.+.+..+.|-..+-.+
T Consensus 314 -~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~ 347 (360)
T KOG0990|consen 314 -PVEGHILYQLADIEERLSKGCMQKEQLKAIIKNF 347 (360)
T ss_pred -HHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3355667788999999988887776665555433
|
|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=241.83 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=234.1
Q ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHH
Q 000818 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDR 558 (1268)
Q Consensus 479 vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~ 558 (1268)
.+..+.+.|+.|+ ++||+||..- ..+.+.|.+++.. .+...+|+.+. .
T Consensus 6 ~~~~~~~~~~~~~--~~y~~~g~~~---~~~~~~l~~~~~~-----------------------~~~~~fdg~~~----~ 53 (311)
T PRK05907 6 SFKDFSQYYEEKR--PAVIVIGSSS---EEDKDIFIELLVS-----------------------GRKSEFDGQGL----L 53 (311)
T ss_pred HHHHHHHHHhcCC--ceEEEecCCc---HHHHHHHHHHhCC-----------------------CccceecCCCC----C
Confidence 3456777788888 8999999986 5555555555421 11134566542 2
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEE-EEeCCCC---CcchhhhcceeEE----
Q 000818 559 VRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI-FITTDID---NVPRSIQSRCQKY---- 630 (1268)
Q Consensus 559 IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfI-LaTn~~e---KL~pAL~SRcq~I---- 630 (1268)
+.++++.+...| +++.++||+|.+.+.+.....+.|.+++++||+.+++| ++. ..+ ++.+.|.. +..+
T Consensus 54 ~~~ii~~aetlP--fFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k-~~~v~~~~ 129 (311)
T PRK05907 54 QQELLSWTEHFG--LFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSS-ALCLSLFG 129 (311)
T ss_pred HHHHHHHHhcCC--cccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhh-cceecccc
Confidence 567788887766 89999999999888887777889999999999975555 555 232 23444553 4445
Q ss_pred EecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh---CCccCHHHHHHHhcccchHHHH
Q 000818 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNA-DGSLRDAETMLDQLSLL---GKRITSSLVNELVGVVSEEKLL 706 (1268)
Q Consensus 631 ~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S-~GDLRdAinlLEqLsll---gk~IT~edV~eLVG~v~eedif 706 (1268)
.|.++...++..|+.+.++++|+.|+++|+++++..+ ++|+..+.++|++|+++ ++.||.++|.+++....++++|
T Consensus 130 e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF 209 (311)
T PRK05907 130 EWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLW 209 (311)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHH
Confidence 8999999999999999999999999999999999999 69999999999999988 4689999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHhhh--hcccCCCH----HhHHHHHHHHHHHHHHH
Q 000818 707 ELLELAMSSDTAETVKRARELMDS-GVDPMVLMSQLASLIMDIIAGTYT--IGGRSLTE----AELERLKHALKLLSEAE 779 (1268)
Q Consensus 707 dLLdAIls~D~~~ALk~LreLle~-G~dPl~ILs~La~~irDLLa~k~~--~~~r~ls~----~sle~L~raL~iLsEaD 779 (1268)
+|++++..++...|+..+++|+.. |++|+.|++.|+++| ++..+.. ........ ++.++|.+++..|.++|
T Consensus 210 ~L~dai~~~~~~~Al~il~~Ll~~~ge~p~~ILall~rQf--l~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D 287 (311)
T PRK05907 210 KLRDALLRRDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQC--LYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAE 287 (311)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999 6655543 11112223 78999999999999999
Q ss_pred HHhhccC-CchHHHHHHHHHccCC
Q 000818 780 KQLRLSS-ERCTWFTATLLQLGSM 802 (1268)
Q Consensus 780 kqLK~S~-d~rl~LE~aLL~L~~l 802 (1268)
+.+|+|. ++++.||.+|+++|.+
T Consensus 288 ~~iKtg~~d~~~~lElli~~~~~~ 311 (311)
T PRK05907 288 SLIKNNVQDPILAVETLVIRMTNL 311 (311)
T ss_pred HHHhcCCCChHHHHHHHHHHHhcC
Confidence 9999987 9999999999999863
|
|
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=242.62 Aligned_cols=288 Identities=13% Similarity=0.116 Sum_probs=241.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCC
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~p 570 (1268)
.+.+.|||||+.-.-.......|.+.+.... .....+++.+++.+.. . .++ .++...
T Consensus 3 ~l~~iYll~G~E~~l~~~~~~~i~~~~~~~~-----------------~~~~~n~~~~d~~~~~-~---~~i-~~~~t~- 59 (320)
T PRK07914 3 EPAPLHLVLGDEELLVERAVAAVLRSARQRA-----------------GTADVPVSRMRAGDVS-T---YEL-AELLSP- 59 (320)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHhcCc-----------------CCCCCceEEeccccCC-H---HHH-HHhcCC-
Confidence 3578999999996666666666655542100 0124588889886632 2 343 444433
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC---Ccchhhhcce-eEEEecCC-CHHHHHHHHH
Q 000818 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID---NVPRSIQSRC-QKYLFNKI-KDGDIVARLR 645 (1268)
Q Consensus 571 p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e---KL~pAL~SRc-q~I~F~pL-s~eEI~~iL~ 645 (1268)
++++.++||+|+++..+..+..+.|..+++.+|+.+++||+++... ++.++|.... .++.|.++ +..++..|+.
T Consensus 60 -plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~ 138 (320)
T PRK07914 60 -SLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVR 138 (320)
T ss_pred -CCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHH
Confidence 3899999999999887777778899999999999888888765332 3566787765 58999999 9999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHH
Q 000818 646 KISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA 724 (1268)
Q Consensus 646 kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~L 724 (1268)
+.+++.|+.|+++|+++|+..+++|+..+.++|++|+.+ ++.||.++|.++++...+.++|+|+++++.++..+|+..+
T Consensus 139 ~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l 218 (320)
T PRK07914 139 KEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEAL 218 (320)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999875 6789999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHhhh-------------------hcccCCCHHhHHHHHHHHHHHHHHHHHhhcc
Q 000818 725 RELMDSGVDPMVLMSQLASLIMDIIAGTYT-------------------IGGRSLTEAELERLKHALKLLSEAEKQLRLS 785 (1268)
Q Consensus 725 reLle~G~dPl~ILs~La~~irDLLa~k~~-------------------~~~r~ls~~sle~L~raL~iLsEaDkqLK~S 785 (1268)
++|+..|++|+.|+..|+++|+.++..+.. ...++++.|+.++|.+++..|.++|..+|++
T Consensus 219 ~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~ 298 (320)
T PRK07914 219 RWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGA 298 (320)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999998766531 2356778899999999999999999999987
Q ss_pred C-CchHHHHHHHHHccCC
Q 000818 786 S-ERCTWFTATLLQLGSM 802 (1268)
Q Consensus 786 ~-d~rl~LE~aLL~L~~l 802 (1268)
. ++++.||.+|+++|.+
T Consensus 299 ~~~~~~~lE~~i~~~~~~ 316 (320)
T PRK07914 299 AADADYALESAVRRVAEL 316 (320)
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 5 9999999999999873
|
|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=241.27 Aligned_cols=286 Identities=13% Similarity=0.113 Sum_probs=238.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCC
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~p 570 (1268)
.+.++|||||+.-.-.......|.+.+.... ...++++++++.+.. ..++++. ...
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~------------------~~~~n~~~~d~~e~~----~~~l~~~-~t~- 59 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSM------------------ADSLQVTTLKASEVS----QGELLDA-LSP- 59 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccC------------------CCCCceEEeecccCC----HHHHHHh-hCc-
Confidence 4678999999985555545554555542211 125688999987632 3556653 332
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC---CcchhhhcceeEEEecCCCHHHHHHHHHHH
Q 000818 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID---NVPRSIQSRCQKYLFNKIKDGDIVARLRKI 647 (1268)
Q Consensus 571 p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e---KL~pAL~SRcq~I~F~pLs~eEI~~iL~ki 647 (1268)
++++.+++|+|+.++.+.....+.|+.+++.+++.+++||++.... ++.+++...+.++.|.++...++..|+.+.
T Consensus 60 -slF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~ 138 (318)
T PRK05629 60 -SLFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQE 138 (318)
T ss_pred -CccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHH
Confidence 3789999999999887766678889999999988888888876443 356688889999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000818 648 SAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARE 726 (1268)
Q Consensus 648 akkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~Lre 726 (1268)
+++.|+.|+++|+++|+..+++|+..+.++|++|+++ ++.||.++|.+++....+.++|+|+++++.++...|+..+++
T Consensus 139 ~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~ 218 (318)
T PRK05629 139 FKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRR 218 (318)
T ss_pred HHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999877 678999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHhhh---------------------hcccCCCHHhHHHHHHHHHHHHHHHHHhhcc
Q 000818 727 LMDSGVDPMVLMSQLASLIMDIIAGTYT---------------------IGGRSLTEAELERLKHALKLLSEAEKQLRLS 785 (1268)
Q Consensus 727 Lle~G~dPl~ILs~La~~irDLLa~k~~---------------------~~~r~ls~~sle~L~raL~iLsEaDkqLK~S 785 (1268)
|+..|++|+.|+..|+++++.+...... ...++++.|+.+.|.+++..|.++|..+|++
T Consensus 219 l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~ 298 (318)
T PRK05629 219 ALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQ 298 (318)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999886654322110 2356677899999999999999999999987
Q ss_pred C-CchHHHHHHHHHccC
Q 000818 786 S-ERCTWFTATLLQLGS 801 (1268)
Q Consensus 786 ~-d~rl~LE~aLL~L~~ 801 (1268)
. ++.+.||.+|++++.
T Consensus 299 ~~d~~~~lE~~i~~~~~ 315 (318)
T PRK05629 299 GGDPEFAIESAVRRVAE 315 (318)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 6 999999999999876
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=236.10 Aligned_cols=285 Identities=17% Similarity=0.171 Sum_probs=235.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCC
Q 000818 492 IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571 (1268)
Q Consensus 492 i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp 571 (1268)
..++|||||+........++.+.+.+.... ....+++.+++.+.. .++.++++.+...+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~------------------~~~fn~~~~~~~e~~--~~~~~~~~~~~t~s- 77 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDL------------------DDPFAVVRLDGDDLD--ADPARLEDEANAIS- 77 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCC------------------CCCcceeeccHHHhh--cCHHHHHHHHhCCC-
Confidence 569999999998888888888877763211 013467777765421 12567788887654
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC---Ccchhhh--cceeEEEecCCCHHHHHHHHHH
Q 000818 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID---NVPRSIQ--SRCQKYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 572 ~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e---KL~pAL~--SRcq~I~F~pLs~eEI~~iL~k 646 (1268)
+++.+++|+|.++. ....+.|..+++.+++.+++|+.....+ ++.+.+. ..+..+.|.+++..++..||.+
T Consensus 78 -lF~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~ 153 (343)
T PRK06585 78 -LFGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDD 153 (343)
T ss_pred -CCCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHH
Confidence 88999999999653 4556789999999888888888765543 2334342 3456689999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CccCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHH
Q 000818 647 ISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKR 723 (1268)
Q Consensus 647 iakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg---k~IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~ 723 (1268)
++++.|+.|+++|+++|+..++||++.+.++|++|+++. +.||.++|.++++...+.++|+|+++++.++...|+..
T Consensus 154 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~ 233 (343)
T PRK06585 154 ELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERA 233 (343)
T ss_pred HHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999882 57999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHhhh------------------------hcccCCCHHhHHHHHHHHHHHHHHH
Q 000818 724 ARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------------------IGGRSLTEAELERLKHALKLLSEAE 779 (1268)
Q Consensus 724 LreLle~G~dPl~ILs~La~~irDLLa~k~~------------------------~~~r~ls~~sle~L~raL~iLsEaD 779 (1268)
++.|+..|++|+.|+..|.++|+.++..+.. ...++++.|+.+.|.+++..|.++|
T Consensus 234 l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d 313 (343)
T PRK06585 234 LDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAE 313 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998655422 0124456788899999999999999
Q ss_pred HHhhccC-CchHHHHHHHHHccC
Q 000818 780 KQLRLSS-ERCTWFTATLLQLGS 801 (1268)
Q Consensus 780 kqLK~S~-d~rl~LE~aLL~L~~ 801 (1268)
.++|++. ++.+.||.++++||.
T Consensus 314 ~~lK~~~~~~~~~le~~i~~~~~ 336 (343)
T PRK06585 314 LDCRRNPALADAIARRVLLSIAV 336 (343)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHH
Confidence 9999886 788999999999986
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=232.25 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc-cEEEEc--CCCC
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR-NFMEVD--GTNK 553 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~-dfIEID--aSs~ 553 (1268)
..+++.|.++++.+++.|+|||+|++|+||+.+|+.|++.++|....... .+.++ +++.++ +. .
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~------------~~~~p~n~~~~d~~g~-~ 68 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLN------------EQELPANIILFDIFDK-D 68 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCC------------CCCCCcceEEeccCCC-c
Confidence 45788999999999999999999999999999999999999986532211 11233 677776 42 3
Q ss_pred cChHHHHHHHHHHHcCCCCCC-CCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEe
Q 000818 554 KGLDRVRYILKHLSAGLPSAS-PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632 (1268)
Q Consensus 554 ~gId~IReLIEea~~~pp~~~-g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F 632 (1268)
.++++|+++++.+.+.+ +. +++||||||+++.|+..++|+||++||+||.+++|||+|+++.++++||+|||+++.|
T Consensus 69 i~vd~Ir~l~~~~~~~~--~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 69 LSKSEFLSAINKLYFSS--FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CCHHHHHHHHHHhccCC--cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 56899999999998764 33 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHHH
Q 000818 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELA 712 (1268)
Q Consensus 633 ~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdAI 712 (1268)
.+++.+++..||... .++++....++..++| +..|+.++..-. .+... .+.+++..+
T Consensus 147 ~~l~~~~l~~~l~~~------~~~~~~a~~~a~~~~~-~~~a~~~~~~~~-------~~~~~---------~~~~~l~~~ 203 (299)
T PRK07132 147 KEPDQQKILAKLLSK------NKEKEYNWFYAYIFSN-FEQAEKYINKES-------ENLLK---------KFEEALNKS 203 (299)
T ss_pred CCCCHHHHHHHHHHc------CCChhHHHHHHHHcCC-HHHHHHHHhcCC-------HHHHH---------HHHHHHHHh
Confidence 999999999998752 3677777778877774 998888764321 11111 111222222
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCH---------HhHHHHHHHHHHHHHHHHHhh
Q 000818 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTE---------AELERLKHALKLLSEAEKQLR 783 (1268)
Q Consensus 713 ls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~---------~sle~L~raL~iLsEaDkqLK 783 (1268)
.. +....+.....++. ...-..++..+.-+++|++..+.......+.. .+... .+..+.++.+.|+
T Consensus 204 ~~-~~~~l~~~~~~~~~-ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~~~~i~~~~~s~~~---li~~i~~~~~~L~ 278 (299)
T PRK07132 204 LK-EKYELILFLNKKLT-KENALFLLKLLKFFFKSIFANKKKKNPKNIKVAFSKKKKFKIEFFE---LITIIDEFLNSLE 278 (299)
T ss_pred hh-hHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhccCChHhHhhHHHHHHHHhcCHHH---HHHHHHHHHHHHH
Confidence 11 11112222222222 33445566677777888876654311100100 22222 3888999999999
Q ss_pred ccCCchHHHHHHHHHccC
Q 000818 784 LSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 784 ~S~d~rl~LE~aLL~L~~ 801 (1268)
...+..+.+|.++++|..
T Consensus 279 ~N~N~~l~~e~lll~l~e 296 (299)
T PRK07132 279 TNENFNLQKQAFLVKIYE 296 (299)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 999999999999999854
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=235.23 Aligned_cols=211 Identities=20% Similarity=0.281 Sum_probs=170.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-CcChHHHHHHHHHHHcC
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-KKGLDRVRYILKHLSAG 569 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-~~gId~IReLIEea~~~ 569 (1268)
.++|+|||+||.|+||..+|..+|+.+.|... ..|||.|++|+.+..+.++|++.+.+.. ..+++++|++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 35799999999999999999999999999864 3599999999999999999999986543 46799999999998753
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEecCC----------CHHH
Q 000818 570 LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI----------KDGD 639 (1268)
Q Consensus 570 pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pL----------s~eE 639 (1268)
+ ...+++||+||+++++|+.+++|+|||+|||||.+++||++|++++.+++||+|||+++.|.++ ++.+
T Consensus 83 s-~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~ 161 (261)
T PRK05818 83 S-VESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRY 161 (261)
T ss_pred c-hhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHH
Confidence 3 1236799999999999999999999999999999999999999999999999999999999888 5556
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccCHHHHHHHhcccchHHHHHHHHHHH
Q 000818 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVGVVSEEKLLELLELAM 713 (1268)
Q Consensus 640 I~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll-gk~IT~edV~eLVG~v~eedifdLLdAIl 713 (1268)
+.+.|... . .+++ .++..++|++.+|..+++.+... ...++...+.+++.....+++-.++..+.
T Consensus 162 i~~~L~~~---~--~~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l~ 227 (261)
T PRK05818 162 FQYILLSF---Y--SVDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLI 227 (261)
T ss_pred HHHHHHHc---c--CccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555432 1 2444 56778899999999999965221 23455555566666666555555555443
|
|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=230.86 Aligned_cols=295 Identities=19% Similarity=0.277 Sum_probs=238.5
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IR 560 (1268)
..+...+..+ +.+.|||||+.-.=+...++.+.+.+.... ....+++.+++.+.. +.
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~------------------~~~~~~~~~d~~~~~----~~ 62 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQG------------------FDERNVFTFDGSETD----WD 62 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCC------------------CceeeEEEeecCCCC----HH
Confidence 4566667766 889999999985555555555554431110 114577778876532 55
Q ss_pred HHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHcCCCC--cEEEEEEeCCCC---Cc---chhhhccee
Q 000818 561 YILKHLSAGLPSASPRFKVFVIDECHLLPSK----TWLAFLKFLEEPPQ--RVVFIFITTDID---NV---PRSIQSRCQ 628 (1268)
Q Consensus 561 eLIEea~~~pp~~~g~~KVIIIDEaD~LS~e----a~naLLK~LEepp~--~vVfILaTn~~e---KL---~pAL~SRcq 628 (1268)
.+++.+...+ +++.++||||++++.+... ....|..++ ++++ .++||+.++..+ ++ .+++.+++.
T Consensus 63 ~l~~~~~t~~--lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~ 139 (340)
T PRK05574 63 DVLEACQSLP--LFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAV 139 (340)
T ss_pred HHHHHhhccC--ccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCce
Confidence 6667666544 7899999999999998754 334455555 4443 456666655543 24 678888999
Q ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CccCHHHHHHHhcccchHHHH
Q 000818 629 KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLVNELVGVVSEEKLL 706 (1268)
Q Consensus 629 ~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg--k~IT~edV~eLVG~v~eedif 706 (1268)
++.|.+++..++..||...+.+.|+.|+++|+++|+..+++|+..+.++|++++++. +.||.++|.++++...+.++|
T Consensus 140 ~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f 219 (340)
T PRK05574 140 VVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVF 219 (340)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHH
Confidence 999999999999999999999999999999999999999999999999999998873 459999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh----------------------hcccCCCHHh
Q 000818 707 ELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------------------IGGRSLTEAE 764 (1268)
Q Consensus 707 dLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~----------------------~~~r~ls~~s 764 (1268)
+|+++++.++...++..++.|+..|.+|+.|+.+|.+++++++..+.. ...++++.++
T Consensus 220 ~l~dai~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s 299 (340)
T PRK05574 220 DLVDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLS 299 (340)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999988765432 1234556788
Q ss_pred HHHHHHHHHHHHHHHHHhhccC--CchHHHHHHHHHccC
Q 000818 765 LERLKHALKLLSEAEKQLRLSS--ERCTWFTATLLQLGS 801 (1268)
Q Consensus 765 le~L~raL~iLsEaDkqLK~S~--d~rl~LE~aLL~L~~ 801 (1268)
.+.|.+++..|.++|.++|++. ++.+.||.++++||.
T Consensus 300 ~~~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 300 LKQLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999995 899999999999997
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=230.53 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=148.0
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHH----cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIk----sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
...++.+++||++|+|+|||++++..+.-.+. ++...+++|||||||+||||+|+++|+++
T Consensus 10 ~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--------------- 74 (233)
T PF05496_consen 10 EEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL--------------- 74 (233)
T ss_dssp --S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---------------
T ss_pred cchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---------------
Confidence 44678999999999999999999988776554 24445899999999999999999999998
Q ss_pred cccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC--------
Q 000818 533 ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-------- 604 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-------- 604 (1268)
+.+|..+++.......++..++..+. ...|+||||+|.|++..++.|+.+||++.
T Consensus 75 ---------~~~~~~~sg~~i~k~~dl~~il~~l~--------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g 137 (233)
T PF05496_consen 75 ---------GVNFKITSGPAIEKAGDLAAILTNLK--------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKG 137 (233)
T ss_dssp ---------T--EEEEECCC--SCHHHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSS
T ss_pred ---------CCCeEeccchhhhhHHHHHHHHHhcC--------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccc
Confidence 34667777755334455555555433 35599999999999999999999999752
Q ss_pred ----------CcEEEEEEeCCCCCcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHH
Q 000818 605 ----------QRVVFIFITTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRD 673 (1268)
Q Consensus 605 ----------~~vVfILaTn~~eKL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRd 673 (1268)
+...+|.+|+....|..++++|+.+ ..+..++.+++.+++.+.+...++.|+++++..||..+.|.+|.
T Consensus 138 ~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 138 PNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp SS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHH
T ss_pred cccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHH
Confidence 3467799999999999999999988 47999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 000818 674 AETMLDQLSLLG 685 (1268)
Q Consensus 674 AinlLEqLsllg 685 (1268)
|.++|..+-.+.
T Consensus 218 Anrll~rvrD~a 229 (233)
T PF05496_consen 218 ANRLLRRVRDFA 229 (233)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHHHHHHHHH
Confidence 999999875443
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=231.81 Aligned_cols=290 Identities=16% Similarity=0.204 Sum_probs=234.9
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IR 560 (1268)
..|...|+.+.++|+|||||..-.-....+..|.+.+..... ..+ +.++.. ++.
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-------------------~~~-~~~~~~------~~~ 57 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-------------------LKT-LYFDEY------DFE 57 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-------------------hhh-hchhhc------cHH
Confidence 467788889999999999999966666666666665521100 011 233321 245
Q ss_pred HHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCC---cchhhhcc--eeEEEecCC
Q 000818 561 YILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN---VPRSIQSR--CQKYLFNKI 635 (1268)
Q Consensus 561 eLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eK---L~pAL~SR--cq~I~F~pL 635 (1268)
++++.+...| ++++++||+|.+...+.....+.|+.+++.+++.+++|++.....+ +.+.+... +..+.|.++
T Consensus 58 ~i~~~~~t~p--lF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~ 135 (328)
T PRK08487 58 QAKDFLSQSS--LFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKP 135 (328)
T ss_pred HHHHHHhccc--ccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCC
Confidence 6777777655 8999999999988777777788999999999888877775544432 22233222 567999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHHHHHHHHHHHcC
Q 000818 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSS 715 (1268)
Q Consensus 636 s~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eedifdLLdAIls~ 715 (1268)
+..++..|+...+++.|+.|+++|+++|+..+++|+..+.++|++|.++.+.||.++|.+++....+.++|+|+++++.+
T Consensus 136 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g 215 (328)
T PRK08487 136 NAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNK 215 (328)
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-----------------------hcccCCCHHhHHHHHHHH
Q 000818 716 DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-----------------------IGGRSLTEAELERLKHAL 772 (1268)
Q Consensus 716 D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~-----------------------~~~r~ls~~sle~L~raL 772 (1268)
+ .++..++.|+..|++|+.|+..|.++|+.++..+.. ...++++.|+.++|.+++
T Consensus 216 ~--~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l 293 (328)
T PRK08487 216 K--DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIF 293 (328)
T ss_pred C--cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHH
Confidence 9 578899999999999999999999999988643211 113566778999999999
Q ss_pred HHHHHHHHHhhccC--CchHHHHHHHHHcc
Q 000818 773 KLLSEAEKQLRLSS--ERCTWFTATLLQLG 800 (1268)
Q Consensus 773 ~iLsEaDkqLK~S~--d~rl~LE~aLL~L~ 800 (1268)
..|.++|.++|++. +..+.||+.++.+.
T Consensus 294 ~~L~e~D~~lK~g~~~~~~~~~~~~~~~~~ 323 (328)
T PRK08487 294 ELLLEWELELKTGQKIDKNLFLLSTLIKIQ 323 (328)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 99999999999985 66788898888764
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=223.94 Aligned_cols=253 Identities=19% Similarity=0.298 Sum_probs=219.0
Q ss_pred CccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-HHHHHHHHHHcCCCCcEEEEEEeCCCCC--
Q 000818 542 SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-KTWLAFLKFLEEPPQRVVFIFITTDIDN-- 618 (1268)
Q Consensus 542 s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-ea~naLLK~LEepp~~vVfILaTn~~eK-- 618 (1268)
..+++.+++.+.. +.++++.+...+ +++.++||||++++.+.. ..++.|++++++++.++++|+.++..++
T Consensus 18 ~~~~~~~~~~e~~----~~~l~~~~~~~s--lf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~ 91 (302)
T TIGR01128 18 EFNVFRIDGEEFD----WNQLLEEAQTLP--LFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRK 91 (302)
T ss_pred hheeeeeccCCCC----HHHHHHHhhccC--cccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhH
Confidence 4678888877532 334677776544 788999999999999864 5689999999999999999998876542
Q ss_pred -cchhhh--cceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCccCHHHH
Q 000818 619 -VPRSIQ--SRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693 (1268)
Q Consensus 619 -L~pAL~--SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll--gk~IT~edV 693 (1268)
+.+.+. ++|.++.|.+++..++..||...+.++|+.|+++++++|+..++||++.+.++|++++++ ++.||.++|
T Consensus 92 ~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I 171 (302)
T TIGR01128 92 KLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDV 171 (302)
T ss_pred HHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHH
Confidence 223333 499999999999999999999999999999999999999999999999999999999988 568999999
Q ss_pred HHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh-------------------
Q 000818 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT------------------- 754 (1268)
Q Consensus 694 ~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~------------------- 754 (1268)
..++....+.++|+++++++.++...++..++.|+..|++|+.|+.+|.+++++++..+..
T Consensus 172 ~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~ 251 (302)
T TIGR01128 172 EEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPY 251 (302)
T ss_pred HHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998765422
Q ss_pred ---hcccCCCHHhHHHHHHHHHHHHHHHHHhhc-c-CCchHHHHHHHHHcc
Q 000818 755 ---IGGRSLTEAELERLKHALKLLSEAEKQLRL-S-SERCTWFTATLLQLG 800 (1268)
Q Consensus 755 ---~~~r~ls~~sle~L~raL~iLsEaDkqLK~-S-~d~rl~LE~aLL~L~ 800 (1268)
...++++.|+.+.|.+++..|.++|.++|. + .++++.||.++++||
T Consensus 252 ~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 252 RRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 123455668889999999999999999994 4 499999999999987
|
subunit around DNA forming a DNA sliding clamp. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=220.01 Aligned_cols=209 Identities=21% Similarity=0.252 Sum_probs=168.8
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHc----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISR----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIks----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
..|..+|||.+|++++||+++++.|..++.. +...+++|||||+|+|||++|+++|+++..
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--------------- 77 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--------------- 77 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC---------------
Confidence 4567899999999999999999998877753 455678999999999999999999999842
Q ss_pred cccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC----------
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP---------- 604 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp---------- 604 (1268)
.+..+++........+..++..+ ....||||||+|.++....+.|+.++++..
T Consensus 78 ---------~~~~~~~~~~~~~~~l~~~l~~l--------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~ 140 (328)
T PRK00080 78 ---------NIRITSGPALEKPGDLAAILTNL--------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPA 140 (328)
T ss_pred ---------CeEEEecccccChHHHHHHHHhc--------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcc
Confidence 23333332222223444444432 235699999999999888888888877531
Q ss_pred --------CcEEEEEEeCCCCCcchhhhccee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Q 000818 605 --------QRVVFIFITTDIDNVPRSIQSRCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAE 675 (1268)
Q Consensus 605 --------~~vVfILaTn~~eKL~pAL~SRcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAi 675 (1268)
+.+++|++|+....+.++|++||. .+.|.+++.+++..+|...+...++.++++++.+|+..++|++|.|.
T Consensus 141 ~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~ 220 (328)
T PRK00080 141 ARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIAN 220 (328)
T ss_pred ccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHH
Confidence 246789999999999999999984 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 676 TMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 676 nlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
+.|+++..+ .+.|+.++|.+++..
T Consensus 221 ~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 221 RLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999987532 357999999887744
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=234.36 Aligned_cols=250 Identities=24% Similarity=0.363 Sum_probs=185.5
Q ss_pred cccccCCcCCccccccCCc-cchhhhhh------chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 000818 431 WSSSCRSQDGLEIVALNGE-EEEGVLEN------IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRG 503 (1268)
Q Consensus 431 Wss~lrsqdG~~i~~~~~e-~e~~~~~~------~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpG 503 (1268)
|+. +++|++..+++.... ++...... .++|.+||||.+|++++||+..++.|+.++.... ..++||+||+|
T Consensus 19 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~-~~~vLi~Ge~G 96 (531)
T TIGR02902 19 FNA-LKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPN-PQHVIIYGPPG 96 (531)
T ss_pred HHH-HHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCC-CceEEEECCCC
Confidence 676 899999988873222 22233222 3589999999999999999999999998876654 46789999999
Q ss_pred chHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC----cChHHHHHHHHH----HHcC------
Q 000818 504 TGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK----KGLDRVRYILKH----LSAG------ 569 (1268)
Q Consensus 504 TGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~----~gId~IReLIEe----a~~~------ 569 (1268)
||||++|+++.+........ | ......|+++|++.. +++.+ .++.. ....
T Consensus 97 tGKt~lAr~i~~~~~~~~~s---~-----------~~~~~~fi~id~~~~~~~~~~~~~--~li~~~~~p~~~~~~~~g~ 160 (531)
T TIGR02902 97 VGKTAAARLVLEEAKKNPAS---P-----------FKEGAAFVEIDATTARFDERGIAD--PLIGSVHDPIYQGAGPLGI 160 (531)
T ss_pred CCHHHHHHHHHHHhhhccCC---C-----------cCCCCCEEEEccccccCCccccch--hhcCCcccchhcccccccc
Confidence 99999999998765321100 0 011346777776531 11111 11110 0000
Q ss_pred ---C-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC----------------------------CCcEEEEEEe
Q 000818 570 ---L-----PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP----------------------------PQRVVFIFIT 613 (1268)
Q Consensus 570 ---p-----p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep----------------------------p~~vVfILaT 613 (1268)
+ ........++||||++.|+...++.|+++||+. |.++++|++|
T Consensus 161 ~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~AT 240 (531)
T TIGR02902 161 AGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGAT 240 (531)
T ss_pred CCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEe
Confidence 0 001345679999999999999999999999752 2346777776
Q ss_pred C-CCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----Cc
Q 000818 614 T-DIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-----KR 687 (1268)
Q Consensus 614 n-~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-----k~ 687 (1268)
+ .++.+++++++||..+.|.+++.+++..+++..+++.++.++++++++|+.++. |.|.+.++++.++... ..
T Consensus 241 t~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~ 319 (531)
T TIGR02902 241 TRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKR 319 (531)
T ss_pred cCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcE
Confidence 5 467899999999999999999999999999999999999999999999988775 8999999999986432 36
Q ss_pred cCHHHHHHHhcc
Q 000818 688 ITSSLVNELVGV 699 (1268)
Q Consensus 688 IT~edV~eLVG~ 699 (1268)
|+.++|..+++.
T Consensus 320 It~~dI~~vl~~ 331 (531)
T TIGR02902 320 ILAEDIEWVAEN 331 (531)
T ss_pred EcHHHHHHHhCC
Confidence 999999888754
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=205.73 Aligned_cols=200 Identities=22% Similarity=0.248 Sum_probs=159.7
Q ss_pred CCCccccCcHHHHHHHHHHHHc----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 468 IFFDELIGQNIVVQSLVNTISR----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIks----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
++|+|+|||+++++.|..++.. ....+++||+||||||||++|+++|+.+.+
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------ 56 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------ 56 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------------------------
Confidence 4799999999999999988873 233467899999999999999999999832
Q ss_pred cEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC------------------C
Q 000818 544 NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP------------------Q 605 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp------------------~ 605 (1268)
++..+.+........+..++..+ ....|+||||+|.+....++.|+.++++.. +
T Consensus 57 ~~~~~~~~~~~~~~~l~~~l~~~--------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 128 (305)
T TIGR00635 57 NLKITSGPALEKPGDLAAILTNL--------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP 128 (305)
T ss_pred CEEEeccchhcCchhHHHHHHhc--------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC
Confidence 23333333222233444444433 234599999999999988888888876322 3
Q ss_pred cEEEEEEeCCCCCcchhhhccee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000818 606 RVVFIFITTDIDNVPRSIQSRCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 606 ~vVfILaTn~~eKL~pAL~SRcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll 684 (1268)
.+++|++|+.+..+.+++++||. .+.|.+++.+++..+|.+.+...++.++++++.+|++.++|++|.+.++++.+..+
T Consensus 129 ~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDF 208 (305)
T ss_pred CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 47889999999999999999995 48999999999999999999999999999999999999999999999999987533
Q ss_pred -----CCccCHHHHHHHhcc
Q 000818 685 -----GKRITSSLVNELVGV 699 (1268)
Q Consensus 685 -----gk~IT~edV~eLVG~ 699 (1268)
...|+.++|.+.+..
T Consensus 209 a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 209 AQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHcCCCCcCHHHHHHHHHH
Confidence 356999999887754
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=199.79 Aligned_cols=295 Identities=18% Similarity=0.266 Sum_probs=229.0
Q ss_pred HHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHH
Q 000818 482 SLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRY 561 (1268)
Q Consensus 482 tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IRe 561 (1268)
.+...+..+...++|||||+.-.=....+..+.+...++. ....++.++..+ .++..
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~-------------------~~~~~~~~~~~~----~~~~~ 61 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADG-------------------FDENYSFFDDSE----LDWAD 61 (334)
T ss_pred HHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccc-------------------hhhHHhhccccc----CCHHH
Confidence 3455666666789999999985555555555555543111 122222222222 22445
Q ss_pred HHHHHHcCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHcCCC-CcEEEEEEeCCCCC---cchhhhcc--eeEEEecC
Q 000818 562 ILKHLSAGLPSASPRFKVFVIDECHLLP-SKTWLAFLKFLEEPP-QRVVFIFITTDIDN---VPRSIQSR--CQKYLFNK 634 (1268)
Q Consensus 562 LIEea~~~pp~~~g~~KVIIIDEaD~LS-~ea~naLLK~LEepp-~~vVfILaTn~~eK---L~pAL~SR--cq~I~F~p 634 (1268)
+++.+...+ +++..++|+|....... .+....+......+| ..++||+..+..++ +.+.+..- +.++.+.+
T Consensus 62 ~~~~~~s~~--lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~ 139 (334)
T COG1466 62 LLSELESPS--LFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKP 139 (334)
T ss_pred HHHHhhccc--cccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCC
Confidence 666665433 67888999999988865 455566666777777 67777776655542 33333332 66899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CccCHHHHHHHhcccchHHHHHHHHHH
Q 000818 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLVNELVGVVSEEKLLELLELA 712 (1268)
Q Consensus 635 Ls~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg--k~IT~edV~eLVG~v~eedifdLLdAI 712 (1268)
++..++.+|+...+++.|+.|+++|+++|+...+||++.+.++|++|+++. +.||.++|..+++...+.++|+|++++
T Consensus 140 ~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dai 219 (334)
T COG1466 140 LDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADAL 219 (334)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999883 479999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh----------------------hcccCCCHHhHHHHHH
Q 000818 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------------------IGGRSLTEAELERLKH 770 (1268)
Q Consensus 713 ls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~----------------------~~~r~ls~~sle~L~r 770 (1268)
+.++...|+..+++|+.+|++|+.|+..|.++|+.++..+.. ...+.+.+++...|.+
T Consensus 220 l~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~ 299 (334)
T COG1466 220 LKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLK 299 (334)
T ss_pred HCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999966543332 1223334588899999
Q ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHccC
Q 000818 771 ALKLLSEAEKQLRLSS-ERCTWFTATLLQLGS 801 (1268)
Q Consensus 771 aL~iLsEaDkqLK~S~-d~rl~LE~aLL~L~~ 801 (1268)
++++|.++|..+|.+. ++...++.+|++++.
T Consensus 300 ~l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~ 331 (334)
T COG1466 300 ALRLLAQLDYQIKTGYGDPVWALELFLLRLLE 331 (334)
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHhh
Confidence 9999999999999998 788888999988875
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=211.67 Aligned_cols=215 Identities=20% Similarity=0.291 Sum_probs=181.2
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHc--------------------------------CCCC-CeEEEEcCCCch
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISR--------------------------------GRIA-PVYLFQGPRGTG 505 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIks--------------------------------gRi~-~ayLL~GPpGTG 505 (1268)
.-|++||+|+.|.||+|.+.+-+.++.||+. +++. ..+||+||||.|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 3799999999999999999999999999861 1221 478999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC--CCCcEEEEEe
Q 000818 506 KTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA--SPRFKVFVID 583 (1268)
Q Consensus 506 KTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~--~g~~KVIIID 583 (1268)
|||+|+++|+.. ++.++|||+++.+....+++.++.+.+..... .++..++|||
T Consensus 339 KTTLAHViAkqa------------------------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 339 KTTLAHVIAKQA------------------------GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVID 394 (877)
T ss_pred hhHHHHHHHHhc------------------------CceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence 999999999996 67999999999999999999888876654322 3778899999
Q ss_pred CCCCCCHHHHHHHHHHHcC------CC---------------CcEEEEEEeCCCCC-cchhhhcceeEEEecCCCHHHHH
Q 000818 584 ECHLLPSKTWLAFLKFLEE------PP---------------QRVVFIFITTDIDN-VPRSIQSRCQKYLFNKIKDGDIV 641 (1268)
Q Consensus 584 EaD~LS~ea~naLLK~LEe------pp---------------~~vVfILaTn~~eK-L~pAL~SRcq~I~F~pLs~eEI~ 641 (1268)
|||.-...+.+.|+..++. ++ -.--||++||+... -+..|+--|+++.|.+++..-++
T Consensus 395 EIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 395 EIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred cccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHH
Confidence 9999988899999998861 11 12357889998752 35567778999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----cCHHHHHHHh
Q 000818 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR----ITSSLVNELV 697 (1268)
Q Consensus 642 ~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~----IT~edV~eLV 697 (1268)
++|+.||..|++.++..+|..|++++++|+|..+|.|+.|+..+++ |...+|.+..
T Consensus 475 ~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~ 534 (877)
T KOG1969|consen 475 ERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKN 534 (877)
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhh
Confidence 9999999999999999999999999999999999999999988765 5555555444
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=195.16 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=165.5
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHc----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISR----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIks----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.-...||++|+|+|||+.++..|.-.|+. +...-++|||||||.||||+|.++|++++
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------------------ 77 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG------------------ 77 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------------------
Confidence 55678999999999999999998877763 44446899999999999999999999994
Q ss_pred cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC------------
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP------------ 604 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp------------ 604 (1268)
.++....+.......++..++..+. .+.|+||||+|.|++.+...|...||++.
T Consensus 78 ------vn~k~tsGp~leK~gDlaaiLt~Le--------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Ar 143 (332)
T COG2255 78 ------VNLKITSGPALEKPGDLAAILTNLE--------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAAR 143 (332)
T ss_pred ------CCeEecccccccChhhHHHHHhcCC--------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccc
Confidence 2333333332222334555555433 45699999999999999999999998642
Q ss_pred ------CcEEEEEEeCCCCCcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 000818 605 ------QRVVFIFITTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETM 677 (1268)
Q Consensus 605 ------~~vVfILaTn~~eKL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinl 677 (1268)
+...+|.+|+..-.|..+|+.|+.+ .++.-++.+|+..++.+-+...+++++++++..||+++.|-+|-|..+
T Consensus 144 sv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 144 SIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHH
Confidence 4677899999999999999999976 778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-----CCccCHHHHHHHh
Q 000818 678 LDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 678 LEqLsll-----gk~IT~edV~eLV 697 (1268)
|..+--+ ...|+.+.+.+++
T Consensus 224 LrRVRDfa~V~~~~~I~~~ia~~aL 248 (332)
T COG2255 224 LRRVRDFAQVKGDGDIDRDIADKAL 248 (332)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9987544 3466666655554
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=185.19 Aligned_cols=206 Identities=24% Similarity=0.307 Sum_probs=159.1
Q ss_pred hhhhcCCCCCccccCcHHHHHH---HHHHHHc----CCC-CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 461 LSQKYKPIFFDELIGQNIVVQS---LVNTISR----GRI-APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~t---Lk~aIks----gRi-~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
..+..+-.+|+|+|||+++.+. |.+.+++ +.. +..+|||||||||||.+|+++|.+.
T Consensus 111 ~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--------------- 175 (368)
T COG1223 111 DREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--------------- 175 (368)
T ss_pred hhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---------------
Confidence 3456667899999999998865 4444543 333 3689999999999999999999887
Q ss_pred cccccccCCCccEEEEcCCCCc------ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC------------HHHHH
Q 000818 533 ECNDFISGKSRNFMEVDGTNKK------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP------------SKTWL 594 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~~------gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS------------~ea~n 594 (1268)
..+++-+.++... +..+|+++.+.+....|+ ||||||+|.+. .+..|
T Consensus 176 ---------kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPc------ivFiDE~DAiaLdRryQelRGDVsEiVN 240 (368)
T COG1223 176 ---------KVPLLLVKATELIGEHVGDGARRIHELYERARKAAPC------IVFIDELDAIALDRRYQELRGDVSEIVN 240 (368)
T ss_pred ---------CCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCe------EEEehhhhhhhhhhhHHHhcccHHHHHH
Confidence 4577777776533 245788999998877665 99999999874 34589
Q ss_pred HHHHHHcCC--CCcEEEEEEeCCCCCcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Q 000818 595 AFLKFLEEP--PQRVVFIFITTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG-S 670 (1268)
Q Consensus 595 aLLK~LEep--p~~vVfILaTn~~eKL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G-D 670 (1268)
+||.-|+.. ...+++|.+||+++-|+++|+||+.. |.|..|+.++...+|+..+++.-+.++.. +++++..+.| +
T Consensus 241 ALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~S 319 (368)
T COG1223 241 ALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMS 319 (368)
T ss_pred HHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCC
Confidence 999998754 35799999999999999999999976 99999999999999999999998888777 8888888866 5
Q ss_pred HHHHHHHHHHHHHh------CCccCHHHHHHHh
Q 000818 671 LRDAETMLDQLSLL------GKRITSSLVNELV 697 (1268)
Q Consensus 671 LRdAinlLEqLsll------gk~IT~edV~eLV 697 (1268)
-|++..-+-+.++. ...|+.++++.++
T Consensus 320 gRdikekvlK~aLh~Ai~ed~e~v~~edie~al 352 (368)
T COG1223 320 GRDIKEKVLKTALHRAIAEDREKVEREDIEKAL 352 (368)
T ss_pred chhHHHHHHHHHHHHHHHhchhhhhHHHHHHHH
Confidence 56554333332222 3456666665554
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=181.36 Aligned_cols=185 Identities=17% Similarity=0.192 Sum_probs=156.0
Q ss_pred HHHHHHHHHcCCCCCeEEEEcCCC-chHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC-------
Q 000818 480 VQSLVNTISRGRIAPVYLFQGPRG-TGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT------- 551 (1268)
Q Consensus 480 v~tLk~aIksgRi~~ayLL~GPpG-TGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS------- 551 (1268)
+..|.+.++.+++.|+|||.|..+ ++|..++..+++.+.|. .+..+.++|++.+.+.
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~---------------~i~~~~HPD~~~I~pe~~~~~~~ 66 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKN---------------SIPLENNPDYHFIARETSATSNA 66 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhcc---------------CcccCCCCCEEEEeccccccccC
Confidence 457899999999999999999998 99999999999999764 2455668899988643
Q ss_pred CCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEE
Q 000818 552 NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631 (1268)
Q Consensus 552 s~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~ 631 (1268)
...++++||++.+.+...+ ..+++||+||+++|.|+.++.|+|||+|||||.+++||++|.++..+++||+|||+.+.
T Consensus 67 ~~I~IdqIReL~~~l~~~p--~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~ 144 (263)
T PRK06581 67 KNISIEQIRKLQDFLSKTS--AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKIN 144 (263)
T ss_pred CcccHHHHHHHHHHHhhCc--ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEe
Confidence 2357999999999998765 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000818 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 632 F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll 684 (1268)
|..+...+...+....+... .+...+++|.+....+........+.+.++
T Consensus 145 ~~~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~~~~~ 194 (263)
T PRK06581 145 VRSSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDNLLLL 194 (263)
T ss_pred CCCCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999988887776655443 345568888888777776666666665443
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=203.57 Aligned_cols=220 Identities=19% Similarity=0.238 Sum_probs=152.1
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCC----CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRI----APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi----~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
...+|++||||++|+||+||++.++.|..++....+ ...++|+||+|+|||++++++|+.+.....++.+|.
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv---- 145 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT---- 145 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh----
Confidence 446899999999999999999999999999886433 245999999999999999999999876544433221
Q ss_pred cccccccCCCccEEE-----EcCCCCcChHHHHHHHHHHHcCCCC----CCCCcEEEEEeCCCCCCH---HHHHHHHH--
Q 000818 533 ECNDFISGKSRNFME-----VDGTNKKGLDRVRYILKHLSAGLPS----ASPRFKVFVIDECHLLPS---KTWLAFLK-- 598 (1268)
Q Consensus 533 sC~~i~sG~s~dfIE-----IDaSs~~gId~IReLIEea~~~pp~----~~g~~KVIIIDEaD~LS~---ea~naLLK-- 598 (1268)
.|...... ..++. +... ...++.+..++..+...... ...+++||||||++.+.. .++..++.
T Consensus 146 ~~~~~~~~--~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~ 222 (637)
T TIGR00602 146 LPDFQKND--HKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWK 222 (637)
T ss_pred hhcccccc--cccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHH
Confidence 11111000 00000 0000 12356677777766421100 135788999999976542 23444444
Q ss_pred HHcCCCCcEEEEEEeCCCCC---------------cchhhhc--ceeEEEecCCCHHHHHHHHHHHHHhcCCC------C
Q 000818 599 FLEEPPQRVVFIFITTDIDN---------------VPRSIQS--RCQKYLFNKIKDGDIVARLRKISAEENLN------V 655 (1268)
Q Consensus 599 ~LEepp~~vVfILaTn~~eK---------------L~pAL~S--Rcq~I~F~pLs~eEI~~iL~kiakkEgi~------I 655 (1268)
+.+.. .+.+|+++++... |.++|++ |+.+|.|+|+...++.+.|..++.+++.. +
T Consensus 223 ~~e~~--~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 223 YVSIG--RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred hhcCC--CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 44544 4556666663211 2378987 66779999999999999999999987532 2
Q ss_pred -CHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 000818 656 -EPDALDLIALNADGSLRDAETMLDQLSLLG 685 (1268)
Q Consensus 656 -d~dALelLA~~S~GDLRdAinlLEqLsllg 685 (1268)
+++++..|+..+.||+|.|++.|+.++..+
T Consensus 301 p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred CCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 568999999999999999999999986543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=174.59 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=145.3
Q ss_pred CCCcccc-C-cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 468 IFFDELI-G-QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 468 ~tFdDLV-G-Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
.+|++++ | +..++..+..+..... .+.++||||+|+|||++++++++++... |....|
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~~~-~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------------------~~~v~y 78 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQEH-SGYIYLWSREGAGRSHLLHAACAELSQR-------------------GRAVGY 78 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhCCC-CCeEEEECCCCCCHHHHHHHHHHHHHhC-------------------CCeEEE
Confidence 3788888 3 5677777777766443 4689999999999999999999987311 112233
Q ss_pred EEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH--H----HHHHHHHHcCCCCcEEEEEEeCCCC--
Q 000818 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK--T----WLAFLKFLEEPPQRVVFIFITTDID-- 617 (1268)
Q Consensus 546 IEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e--a----~naLLK~LEepp~~vVfILaTn~~e-- 617 (1268)
+.++... ....++++.+.. ..+|||||+|.+... . ++.+...++.. ...+|++++.+.
T Consensus 79 ~~~~~~~----~~~~~~~~~~~~--------~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g--~~~li~ts~~~p~~ 144 (235)
T PRK08084 79 VPLDKRA----WFVPEVLEGMEQ--------LSLVCIDNIECIAGDELWEMAIFDLYNRILESG--RTRLLITGDRPPRQ 144 (235)
T ss_pred EEHHHHh----hhhHHHHHHhhh--------CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC--CCeEEEeCCCChHH
Confidence 3333211 112233333322 248999999998632 2 34444444532 346777877663
Q ss_pred --Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCcc
Q 000818 618 --NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL----LGKRI 688 (1268)
Q Consensus 618 --KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl----lgk~I 688 (1268)
.+.+.|+||+ .++.+.+++.+++..+|++.+...|+.++++++++|+..+.||+|.+++.|+++.. .+++|
T Consensus 145 l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~i 224 (235)
T PRK08084 145 LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 224 (235)
T ss_pred cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3679999999 78999999999999999998988999999999999999999999999999999842 25789
Q ss_pred CHHHHHHHhc
Q 000818 689 TSSLVNELVG 698 (1268)
Q Consensus 689 T~edV~eLVG 698 (1268)
|.+.|+++++
T Consensus 225 t~~~~k~~l~ 234 (235)
T PRK08084 225 TIPFVKEILK 234 (235)
T ss_pred CHHHHHHHHc
Confidence 9999998864
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=177.44 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=139.7
Q ss_pred CCccccCcHHHHHHHHHHHH----------cC----CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 469 FFDELIGQNIVVQSLVNTIS----------RG----RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIk----------sg----Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
.+++++|.+.+++.|...+. .| ....++||+||||||||++|+++|+.+..... .+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~------- 73 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LS------- 73 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---cc-------
Confidence 35789999999987764332 11 12357899999999999999999999843211 01
Q ss_pred cccccCCCccEEEEcCCCCcC------hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHH
Q 000818 535 NDFISGKSRNFMEVDGTNKKG------LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP--------SKTWLAFLKFL 600 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~g------Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS--------~ea~naLLK~L 600 (1268)
...++++++++..+ ...++++++.+. ..||||||+|.|. .+.++.|++.|
T Consensus 74 -------~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---------~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~ 137 (261)
T TIGR02881 74 -------KGHLIEVERADLVGEYIGHTAQKTREVIKKAL---------GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGM 137 (261)
T ss_pred -------CCceEEecHHHhhhhhccchHHHHHHHHHhcc---------CCEEEEechhhhccCCccchHHHHHHHHHHHH
Confidence 22345554433111 133444554421 2499999999986 45678999999
Q ss_pred cCCCCcEEEEEEeCCCC-----Ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------
Q 000818 601 EEPPQRVVFIFITTDID-----NVPRSIQSRC-QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN-------- 666 (1268)
Q Consensus 601 Eepp~~vVfILaTn~~e-----KL~pAL~SRc-q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~-------- 666 (1268)
++....+++|+++...+ .+.|+|++|+ ..|.|++++.+++..+++.++...+..++++++.+|+..
T Consensus 138 e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 217 (261)
T TIGR02881 138 EDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLS 217 (261)
T ss_pred hccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhcc
Confidence 99888888888765432 3678999999 459999999999999999999999999999999988654
Q ss_pred --cCCCHHHHHHHHHHHHH
Q 000818 667 --ADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 667 --S~GDLRdAinlLEqLsl 683 (1268)
..||.|.+.|+++++..
T Consensus 218 ~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 218 SREFSNARYVRNIIEKAIR 236 (261)
T ss_pred CCCCchHHHHHHHHHHHHH
Confidence 26899999999999753
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=190.23 Aligned_cols=226 Identities=20% Similarity=0.266 Sum_probs=157.0
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHH----cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIk----sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
.+.|..-|.| +.|.|++..++.|...|. ......+++|+|+||||||++++.+.++|.........|
T Consensus 745 ~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp------ 815 (1164)
T PTZ00112 745 IRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLP------ 815 (1164)
T ss_pred HHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCC------
Confidence 3557777888 578899988887776654 233334567999999999999999999884322111111
Q ss_pred ccccccCCCccEEEEcCCCCcChHH-HHH------------------HHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHH
Q 000818 534 CNDFISGKSRNFMEVDGTNKKGLDR-VRY------------------ILKHLSAGLPSASPRFKVFVIDECHLLPSKTWL 594 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~~gId~-IRe------------------LIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~n 594 (1268)
...+++|++........ +.. +++.+............||||||+|.|....+.
T Consensus 816 --------~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QD 887 (1164)
T PTZ00112 816 --------SFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQK 887 (1164)
T ss_pred --------CceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHH
Confidence 24556666643222111 111 111111110001123458999999999876666
Q ss_pred HHHHHHc---CCCCcEEEEEEeCCC---CCcchhhhcceeE--EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 000818 595 AFLKFLE---EPPQRVVFIFITTDI---DNVPRSIQSRCQK--YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL- 665 (1268)
Q Consensus 595 aLLK~LE---epp~~vVfILaTn~~---eKL~pAL~SRcq~--I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~- 665 (1268)
.|+.+++ .....++||+++|.. +.+.+.+++|+.. +.|.|++.+++..+|..++......++++|++++|+
T Consensus 888 VLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk 967 (1164)
T PTZ00112 888 VLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK 967 (1164)
T ss_pred HHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 6666554 334578888999864 4678899999865 999999999999999999986555699999999998
Q ss_pred --HcCCCHHHHHHHHHHHHHh--CCccCHHHHHHHhccc
Q 000818 666 --NADGSLRDAETMLDQLSLL--GKRITSSLVNELVGVV 700 (1268)
Q Consensus 666 --~S~GDLRdAinlLEqLsll--gk~IT~edV~eLVG~v 700 (1268)
...||+|.|+.+|+.++.. +..|+.++|.+++..+
T Consensus 968 VAq~SGDARKALDILRrAgEikegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 968 VANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred hhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH
Confidence 5579999999999998765 4578888888877543
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=174.47 Aligned_cols=226 Identities=19% Similarity=0.230 Sum_probs=154.9
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHc---CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIks---gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
+.+.|...|.|. +++|++..++.|..++.. +..++.++|+||+|||||++++.+++.+.........
T Consensus 4 ~~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~------- 73 (365)
T TIGR02928 4 NRDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDV------- 73 (365)
T ss_pred ChhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCC-------
Confidence 446688889995 679999999888888763 4555789999999999999999999988532211111
Q ss_pred ccccccCCCccEEEEcCCCCcCh-HHHHHHHHHHHc---CCC-----------------CCCCCcEEEEEeCCCCCCH--
Q 000818 534 CNDFISGKSRNFMEVDGTNKKGL-DRVRYILKHLSA---GLP-----------------SASPRFKVFVIDECHLLPS-- 590 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~~gI-d~IReLIEea~~---~pp-----------------~~~g~~KVIIIDEaD~LS~-- 590 (1268)
...++++++...... +-+..+.+.+.. ..+ .......||||||+|.|..
T Consensus 74 --------~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~ 145 (365)
T TIGR02928 74 --------RVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD 145 (365)
T ss_pred --------ceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC
Confidence 124444444332211 112222222210 000 0123456899999999952
Q ss_pred -HHHHHHHHH--HcCCC-CcEEEEEEeCCCC---Ccchhhhccee--EEEecCCCHHHHHHHHHHHHHh--cCCCCCHHH
Q 000818 591 -KTWLAFLKF--LEEPP-QRVVFIFITTDID---NVPRSIQSRCQ--KYLFNKIKDGDIVARLRKISAE--ENLNVEPDA 659 (1268)
Q Consensus 591 -ea~naLLK~--LEepp-~~vVfILaTn~~e---KL~pAL~SRcq--~I~F~pLs~eEI~~iL~kiakk--Egi~Id~dA 659 (1268)
.....|+++ ..+.+ ..+.+|+++|.+. .+.+.+.+|+. .+.|.|++.+++..+|+..+.. ....+++++
T Consensus 146 ~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~ 225 (365)
T TIGR02928 146 DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV 225 (365)
T ss_pred cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH
Confidence 334455555 22332 5788999998875 57888889984 6999999999999999998863 233488888
Q ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHhccc
Q 000818 660 LDLIALNA---DGSLRDAETMLDQLSLL-----GKRITSSLVNELVGVV 700 (1268)
Q Consensus 660 LelLA~~S---~GDLRdAinlLEqLsll-----gk~IT~edV~eLVG~v 700 (1268)
+++++..+ .|++|.|+++|+.++.. ...||.++|.+++..+
T Consensus 226 l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 226 IPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 88766544 79999999999988653 2469999999877655
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=168.50 Aligned_cols=198 Identities=16% Similarity=0.289 Sum_probs=152.1
Q ss_pred CCCCCcccc--CcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 466 KPIFFDELI--GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 466 RP~tFdDLV--GQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
+|.+|++++ +.+.++..+..++........++|+||+|||||++|+++++++.. .+.
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~---------------------~~~ 71 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY---------------------GGR 71 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh---------------------CCC
Confidence 477899988 346777888887775444578999999999999999999998731 133
Q ss_pred cEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC--CcEEEEEEeCCCC---C
Q 000818 544 NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP--QRVVFIFITTDID---N 618 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp--~~vVfILaTn~~e---K 618 (1268)
.++.+++.... .. +. ......+|||||+|.+....+..|+.+++... ...++|++++... .
T Consensus 72 ~~~~i~~~~~~------~~---~~-----~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 72 NARYLDAASPL------LA---FD-----FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred cEEEEehHHhH------HH---Hh-----hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 56666654411 11 11 12345699999999999888888888886422 2334566665443 3
Q ss_pred cchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCccCHH
Q 000818 619 VPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL----LGKRITSS 691 (1268)
Q Consensus 619 L~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl----lgk~IT~e 691 (1268)
+.+.+.+|+ ..+.+++++.++...+|.+++...++.++++++++|+....||+|.+.+.|+.+.. .++.||..
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~ 217 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLP 217 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 567888885 67999999999999999999999999999999999999999999999999998853 35789999
Q ss_pred HHHHHhc
Q 000818 692 LVNELVG 698 (1268)
Q Consensus 692 dV~eLVG 698 (1268)
.|+++++
T Consensus 218 ~~~~~l~ 224 (227)
T PRK08903 218 LLREMLA 224 (227)
T ss_pred HHHHHHh
Confidence 9999875
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=189.86 Aligned_cols=226 Identities=24% Similarity=0.328 Sum_probs=163.0
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
+++.+.+||.+|++++||+..++.+...+.... +.+++|+||+|||||++|+++++........ |+
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~---~~---------- 207 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPF-PQHIILYGPPGVGKTTAARLALEEAKKLKHT---PF---------- 207 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCC---cc----------
Confidence 567888999999999999999999988887655 4679999999999999999998776321110 00
Q ss_pred cCCCccEEEEcCCCCc-ChHHH----------------HHHHHHHHcCC----CCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 000818 539 SGKSRNFMEVDGTNKK-GLDRV----------------RYILKHLSAGL----PSASPRFKVFVIDECHLLPSKTWLAFL 597 (1268)
Q Consensus 539 sG~s~dfIEIDaSs~~-gId~I----------------ReLIEea~~~p----p~~~g~~KVIIIDEaD~LS~ea~naLL 597 (1268)
.....|+.+++.... ....+ +..++...... ........|+||||++.|....++.|+
T Consensus 208 -~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 208 -AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLL 286 (615)
T ss_pred -cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHH
Confidence 012355666654321 00000 01111100000 001223459999999999999999999
Q ss_pred HHHcCC----------------------------CCcEEEEEEeCC-CCCcchhhhcceeEEEecCCCHHHHHHHHHHHH
Q 000818 598 KFLEEP----------------------------PQRVVFIFITTD-IDNVPRSIQSRCQKYLFNKIKDGDIVARLRKIS 648 (1268)
Q Consensus 598 K~LEep----------------------------p~~vVfILaTn~-~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kia 648 (1268)
++|++. +..+++|++|+. +..+.++|++||..+.|.+++.+++..++++++
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 999763 123566666654 567899999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------------CccCHHHHHHHhccc
Q 000818 649 AEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-------------KRITSSLVNELVGVV 700 (1268)
Q Consensus 649 kkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg-------------k~IT~edV~eLVG~v 700 (1268)
.+.++.++++++++|+.++. +.|.+++.|+.+..+. ..|+.++|.++++..
T Consensus 367 ~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 367 EKINVHLAAGVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 99898999999999998765 6799999998774320 157778888777653
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-16 Score=168.82 Aligned_cols=199 Identities=20% Similarity=0.297 Sum_probs=143.9
Q ss_pred CCCccccCcH-HHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIGQN-IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVGQe-~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
.+|+++++.+ ..+..+.... .+.....++|+||+|+|||+++++++.++... +..++
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~---------------------~~~~~ 73 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALALCAAAEQA---------------------GRSSA 73 (233)
T ss_pred CChhhccCCcHHHHHHHHHHH-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---------------------CCcEE
Confidence 4888887654 3344333333 34444679999999999999999999887311 22334
Q ss_pred EEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCCC-CcEEEEEEeCCCC----Cc
Q 000818 547 EVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEPP-QRVVFIFITTDID----NV 619 (1268)
Q Consensus 547 EIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEepp-~~vVfILaTn~~e----KL 619 (1268)
.+..... ...+..+++.+.. ..+|||||++.+. ......|+.+++... ....+|++++.+. .+
T Consensus 74 y~~~~~~--~~~~~~~~~~l~~--------~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 74 YLPLQAA--AGRLRDALEALEG--------RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred EEeHHHh--hhhHHHHHHHHhc--------CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh
Confidence 4443221 1234455555442 2389999999986 333455666654321 1345777777653 35
Q ss_pred chhhhcc---eeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCccCHHH
Q 000818 620 PRSIQSR---CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL----LGKRITSSL 692 (1268)
Q Consensus 620 ~pAL~SR---cq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl----lgk~IT~ed 692 (1268)
.+.++|| |..+.|.+++.+++..+|++++...++.++++++++|+..++||+|.++++|+++.. .++.||.+.
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~ 223 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPF 223 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 7999999 788999999999999999999999999999999999999999999999999998852 257899999
Q ss_pred HHHHhc
Q 000818 693 VNELVG 698 (1268)
Q Consensus 693 V~eLVG 698 (1268)
|++++.
T Consensus 224 ~~~~l~ 229 (233)
T PRK08727 224 LRRVLE 229 (233)
T ss_pred HHHHHh
Confidence 988874
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=166.75 Aligned_cols=201 Identities=14% Similarity=0.239 Sum_probs=139.9
Q ss_pred CCCCCccccCcHHHH--HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 466 KPIFFDELIGQNIVV--QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv--~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
.+.+|+++++++... ..+...... ...+.++||||+|+|||++++++|+++... +...
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------------------~~~~ 70 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFID-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------------------QRTA 70 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------------------CCCe
Confidence 367999999765432 333333332 334678999999999999999999997321 1122
Q ss_pred cEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcCCC--CcEEEEEEeCCCC-C
Q 000818 544 NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEEPP--QRVVFIFITTDID-N 618 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEepp--~~vVfILaTn~~e-K 618 (1268)
.|+.++.... ....+++.+ ....++||||++.+.. .....|+.+++... ...++|++++... .
T Consensus 71 ~y~~~~~~~~----~~~~~~~~~--------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 71 IYIPLSKSQY----FSPAVLENL--------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred EEeeHHHhhh----hhHHHHhhc--------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 2333322111 112333332 2345999999998852 22335555554221 2344556665543 2
Q ss_pred ---cchhhhccee---EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH---h-CCcc
Q 000818 619 ---VPRSIQSRCQ---KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL---L-GKRI 688 (1268)
Q Consensus 619 ---L~pAL~SRcq---~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl---l-gk~I 688 (1268)
+.+.|++|+. .+.+.+|+.+++..+|++.+...++.++++++++|+..++||+|.+++.|+++.. . +++|
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~i 218 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKL 218 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 4589999986 7999999999999999999999999999999999999999999999999998842 2 5689
Q ss_pred CHHHHHHHhc
Q 000818 689 TSSLVNELVG 698 (1268)
Q Consensus 689 T~edV~eLVG 698 (1268)
|.+.|+++++
T Consensus 219 t~~~v~~~L~ 228 (229)
T PRK06893 219 TIPFVKEILG 228 (229)
T ss_pred CHHHHHHHhc
Confidence 9999998874
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=171.51 Aligned_cols=206 Identities=21% Similarity=0.284 Sum_probs=152.3
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY 530 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~ 530 (1268)
++-.-.+|+||-|-+..++.|+++|. .-.++..+|||||||||||.+|+++|...
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------------- 209 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------------- 209 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-------------
Confidence 44445689999999999999999986 34567899999999999999999999887
Q ss_pred cccccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHH
Q 000818 531 CRECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTW 593 (1268)
Q Consensus 531 C~sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~ 593 (1268)
...|+.+.++.. .|..-+|++++-+....|+ ||||||+|.+.. +.+
T Consensus 210 -----------~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPs------IIFiDEIDAIg~kR~d~~t~gDrEVQ 272 (406)
T COG1222 210 -----------DATFIRVVGSELVQKYIGEGARLVRELFELAREKAPS------IIFIDEIDAIGAKRFDSGTSGDREVQ 272 (406)
T ss_pred -----------CceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCe------EEEEechhhhhcccccCCCCchHHHH
Confidence 457888877652 2345678888888766554 999999998842 345
Q ss_pred HHHHHHHc-----CCCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000818 594 LAFLKFLE-----EPPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665 (1268)
Q Consensus 594 naLLK~LE-----epp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~ 665 (1268)
..|+.+|. ++..++.+|+|||.++-|+|+|++ |+.+ |.|+.|+.+....+|+-.+.+..+. ++--++.||.
T Consensus 273 RTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~ 351 (406)
T COG1222 273 RTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLAR 351 (406)
T ss_pred HHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHH
Confidence 55555553 356799999999999999999998 5544 9999999999999998888776543 2233666777
Q ss_pred HcCC-CHHHHHHHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 666 NADG-SLRDAETMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 666 ~S~G-DLRdAinlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
.++| +-.++.+.+..+..+ ...||.++..+.+..
T Consensus 352 ~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 352 LTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred hcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 7655 333344444444333 346777777666643
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=183.94 Aligned_cols=222 Identities=22% Similarity=0.296 Sum_probs=151.4
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHcC----CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRG----RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksg----Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
..++|++||+|++.+||+.|...++.++.|+... .....+||+||+|+|||+++++||+++.....++..|...-.
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 4578999999999999999999999999999752 223579999999999999999999999887777766643100
Q ss_pred cccccccCCCccEEEEcCC-C--CcChHHHHHH-HHHHHcCCC-----CCCCCcEEEEEeCCCCCCH----HHHHHHHHH
Q 000818 533 ECNDFISGKSRNFMEVDGT-N--KKGLDRVRYI-LKHLSAGLP-----SASPRFKVFVIDECHLLPS----KTWLAFLKF 599 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaS-s--~~gId~IReL-IEea~~~pp-----~~~g~~KVIIIDEaD~LS~----ea~naLLK~ 599 (1268)
.-. ...++...... + ....+.+.++ +....+... ......+||+|+|+..+.. ...++|+++
T Consensus 85 ~~~-----~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~ 159 (519)
T PF03215_consen 85 SDN-----QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY 159 (519)
T ss_pred ccc-----ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence 000 00111100000 0 0012223333 222222110 0125789999999987642 335667777
Q ss_pred HcCCCC-cEEEEEEeCCC-------C--------Ccchhhhcc--eeEEEecCCCHHHHHHHHHHHHHhc-----CC-CC
Q 000818 600 LEEPPQ-RVVFIFITTDI-------D--------NVPRSIQSR--CQKYLFNKIKDGDIVARLRKISAEE-----NL-NV 655 (1268)
Q Consensus 600 LEepp~-~vVfILaTn~~-------e--------KL~pAL~SR--cq~I~F~pLs~eEI~~iL~kiakkE-----gi-~I 655 (1268)
+..... .+|||++-.+. . -+++.|+.. +..|.|+|+...-+.+.|.+++..| +. ..
T Consensus 160 l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~ 239 (519)
T PF03215_consen 160 LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV 239 (519)
T ss_pred HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence 776555 77777772111 0 245677764 5669999999999999999999988 32 23
Q ss_pred C--HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000818 656 E--PDALDLIALNADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 656 d--~dALelLA~~S~GDLRdAinlLEqLsl 683 (1268)
. .+.++.|+..+.||+|.|++.|+.++.
T Consensus 240 p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 240 PDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred CChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 2 345999999999999999999999987
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-14 Score=164.82 Aligned_cols=218 Identities=23% Similarity=0.310 Sum_probs=154.1
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHHc---CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIks---gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
.+..+|...|.| +.++|++..++.|...+.. +..++.++|+||||+|||++++.+++.+.....
T Consensus 18 ~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~---------- 84 (394)
T PRK00411 18 KDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV---------- 84 (394)
T ss_pred CChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC----------
Confidence 345566667767 5678999998888877743 334567899999999999999999998843221
Q ss_pred cccccccCCCccEEEEcCCCCcC-----------------------hHHH-HHHHHHHHcCCCCCCCCcEEEEEeCCCCC
Q 000818 533 ECNDFISGKSRNFMEVDGTNKKG-----------------------LDRV-RYILKHLSAGLPSASPRFKVFVIDECHLL 588 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~~g-----------------------Id~I-ReLIEea~~~pp~~~g~~KVIIIDEaD~L 588 (1268)
...++.+++..... .+.+ ..+.+.+. ..+.+.||||||+|.|
T Consensus 85 ---------~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~viviDE~d~l 150 (394)
T PRK00411 85 ---------KVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD-----ERDRVLIVALDDINYL 150 (394)
T ss_pred ---------CcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECCHhHh
Confidence 12333333322111 1221 12222221 1234568999999998
Q ss_pred C----HHHHHHHHHHHcCCCC-cEEEEEEeCCCC---Ccchhhhcce--eEEEecCCCHHHHHHHHHHHHHhc--CCCCC
Q 000818 589 P----SKTWLAFLKFLEEPPQ-RVVFIFITTDID---NVPRSIQSRC--QKYLFNKIKDGDIVARLRKISAEE--NLNVE 656 (1268)
Q Consensus 589 S----~ea~naLLK~LEepp~-~vVfILaTn~~e---KL~pAL~SRc--q~I~F~pLs~eEI~~iL~kiakkE--gi~Id 656 (1268)
. .+....|++.++..+. ++.+|++++..+ .+.+.+.+|+ ..+.|.+++.+++..+|+..+... ...++
T Consensus 151 ~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~ 230 (394)
T PRK00411 151 FEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD 230 (394)
T ss_pred hccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC
Confidence 6 4456677777665443 688899988764 4677788887 468999999999999999988653 33589
Q ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHhccc
Q 000818 657 PDALDLIALNA---DGSLRDAETMLDQLSLL-----GKRITSSLVNELVGVV 700 (1268)
Q Consensus 657 ~dALelLA~~S---~GDLRdAinlLEqLsll-----gk~IT~edV~eLVG~v 700 (1268)
+++++++++.+ .|++|.|+++|..++.. ...||.++|..++..+
T Consensus 231 ~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 231 DEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999988 89999999999887543 2479999999888655
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=169.59 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=138.2
Q ss_pred CccccCcHHHHHHHHHHHH--------c------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 470 FDELIGQNIVVQSLVNTIS--------R------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIk--------s------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
+.+++|.+.+++.|...+. . .+.+.++||+||||||||++|+++|+.+......
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~------------ 89 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI------------ 89 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC------------
Confidence 4589999999987765542 1 1234568999999999999999999987421110
Q ss_pred ccccCCCccEEEEcCCCCc----C--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHH
Q 000818 536 DFISGKSRNFMEVDGTNKK----G--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLL---------PSKTWLAFLKFL 600 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~----g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~L---------S~ea~naLLK~L 600 (1268)
....+++++..+.. | ...++.+++.+ ...|+||||++.| ..++++.|++.|
T Consensus 90 -----~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a---------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~m 155 (287)
T CHL00181 90 -----KKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA---------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVM 155 (287)
T ss_pred -----CCCceEEecHHHHHHHHhccchHHHHHHHHHc---------cCCEEEEEccchhccCCCccchHHHHHHHHHHHH
Confidence 01236666543211 0 11233344432 2359999999987 456789999999
Q ss_pred cCCCCcEEEEEEeCCCC-----Ccchhhhccee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------
Q 000818 601 EEPPQRVVFIFITTDID-----NVPRSIQSRCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN-------- 666 (1268)
Q Consensus 601 Eepp~~vVfILaTn~~e-----KL~pAL~SRcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~-------- 666 (1268)
++...++++|++++... .+.|++.+||. .|.|++++.+++..++..++++.+..++++++..++.+
T Consensus 156 e~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~ 235 (287)
T CHL00181 156 ENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQP 235 (287)
T ss_pred hcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC
Confidence 98878888888876432 24589999997 59999999999999999999999999999988776664
Q ss_pred cCCCHHHHHHHHHHHHH
Q 000818 667 ADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 667 S~GDLRdAinlLEqLsl 683 (1268)
.-||.|.+.++++++..
T Consensus 236 ~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 236 LFANARSVRNALDRARM 252 (287)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 24889999999998864
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=160.56 Aligned_cols=199 Identities=14% Similarity=0.208 Sum_probs=146.4
Q ss_pred CCCCccccC--cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 467 PIFFDELIG--QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 467 P~tFdDLVG--Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
+.+|++++. +..++..|++++.. .....++|+||+|||||++|+.+++.+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~---------------------~~~ 68 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEER---------------------GKS 68 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhc---------------------CCc
Confidence 668888883 66788889888764 335789999999999999999999887311 234
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHcCCC-CcEEEEEEeCCC-CC--
Q 000818 545 FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT--WLAFLKFLEEPP-QRVVFIFITTDI-DN-- 618 (1268)
Q Consensus 545 fIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea--~naLLK~LEepp-~~vVfILaTn~~-eK-- 618 (1268)
++.+++.... +....+++.+ ....+|||||+|.+.... ++.|..+++... ....+|++++.. ..
T Consensus 69 ~~~i~~~~~~--~~~~~~~~~~--------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 69 AIYLPLAELA--QADPEVLEGL--------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred EEEEeHHHHH--HhHHHHHhhc--------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCC
Confidence 5566654321 1122333322 223599999999997633 667776665311 123566666643 22
Q ss_pred cc-hhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCccCH
Q 000818 619 VP-RSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL----LGKRITS 690 (1268)
Q Consensus 619 L~-pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl----lgk~IT~ 690 (1268)
+. +.+.+|+ ..+.+++++.+++..+|+..+.+.++.++++++++|+...+||+|.+.+.|+++.. .++.||.
T Consensus 139 ~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~ 218 (226)
T TIGR03420 139 LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITI 218 (226)
T ss_pred cccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 23 7888886 46999999999999999999988999999999999999999999999999888743 2568999
Q ss_pred HHHHHHh
Q 000818 691 SLVNELV 697 (1268)
Q Consensus 691 edV~eLV 697 (1268)
+.|.+++
T Consensus 219 ~~~~~~~ 225 (226)
T TIGR03420 219 PFVKEVL 225 (226)
T ss_pred HHHHHHh
Confidence 9998875
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=188.37 Aligned_cols=216 Identities=18% Similarity=0.190 Sum_probs=164.4
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhccc-CCCCCCCCCccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-TDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~-~e~~~PCg~C~sC~~i 537 (1268)
.+|+++.||..+++++|+++.+..+...+.+.+. +++||+||||||||++|+.+|+.+.... +..
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~-~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~------------- 235 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKK-NNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN------------- 235 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHHHHHHHHhCCCchh-------------
Confidence 6899999999999999999999999988876654 6789999999999999999999984211 100
Q ss_pred ccCCCccEEEEcCCC------CcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHH
Q 000818 538 ISGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---------SKTWLAFLKFL 600 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs------~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---------~ea~naLLK~L 600 (1268)
-.+..++.++... ..| ...++.+++++... ...|+||||+|.|. .++.+.|+..|
T Consensus 236 --l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~------~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l 307 (731)
T TIGR02639 236 --LKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE------PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL 307 (731)
T ss_pred --hcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc------CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH
Confidence 0134566666322 111 24677788776532 24599999999885 24578888899
Q ss_pred cCCCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC-
Q 000818 601 EEPPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----ENLNVEPDALDLIALNADGS- 670 (1268)
Q Consensus 601 Eepp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----Egi~Id~dALelLA~~S~GD- 670 (1268)
+.. .+.+|.+||..+ .+++++.+||+.|.|.+|+.+++..+|+..... .++.++++++..++..+..-
T Consensus 308 ~~g--~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 308 SSG--KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred hCC--CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 875 789999999743 468999999999999999999999999977664 36789999999999988543
Q ss_pred -----HHHHHHHHHHHHHhC---------CccCHHHHHHHhc
Q 000818 671 -----LRDAETMLDQLSLLG---------KRITSSLVNELVG 698 (1268)
Q Consensus 671 -----LRdAinlLEqLsllg---------k~IT~edV~eLVG 698 (1268)
++.|+.+|+.++... ..|+.++|.+++.
T Consensus 386 ~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~ 427 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVA 427 (731)
T ss_pred ccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHH
Confidence 677899998875421 2366666666553
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=177.68 Aligned_cols=204 Identities=22% Similarity=0.290 Sum_probs=149.2
Q ss_pred cCCCCCccccCcHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIk-----------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
....+|+||+|+++++..|...+. ..+++..+|||||||||||++|+++|..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---------------- 112 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---------------- 112 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------------
Confidence 346689999999999888776654 24566789999999999999999999886
Q ss_pred ccccccCCCccEEEEcCCC------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------------HHH
Q 000818 534 CNDFISGKSRNFMEVDGTN------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTW 593 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------------ea~ 593 (1268)
..+|+.+++++ ..+...++.+++.+....| .||||||+|.+.. ...
T Consensus 113 --------~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p------~Il~iDEid~l~~~r~~~~~~~~~~~~~~~ 178 (495)
T TIGR01241 113 --------GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP------CIIFIDEIDAVGRQRGAGLGGGNDEREQTL 178 (495)
T ss_pred --------CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCC------CEEEEechhhhhhccccCcCCccHHHHHHH
Confidence 23455555432 1134567888888765433 3999999998742 235
Q ss_pred HHHHHHHcCC--CCcEEEEEEeCCCCCcchhhhc--cee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Q 000818 594 LAFLKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNAD 668 (1268)
Q Consensus 594 naLLK~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~ 668 (1268)
+.|+..|+.. ...+++|++||.++.+++++++ |+. .+.|..|+.++...+|+..+....+. ++..+..|+..+.
T Consensus 179 ~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~ 257 (495)
T TIGR01241 179 NQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTP 257 (495)
T ss_pred HHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCC
Confidence 5677777643 2468889999999999999997 564 49999999999999998887765443 3445678888886
Q ss_pred C-CHHHHHHHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 669 G-SLRDAETMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 669 G-DLRdAinlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
| +.+++.+++..++.. ...|+.+++.+++..
T Consensus 258 G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 258 GFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 6 556666766665432 346888888877643
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-15 Score=177.02 Aligned_cols=192 Identities=19% Similarity=0.265 Sum_probs=149.2
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHc-----------C-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISR-----------G-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC 528 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIks-----------g-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PC 528 (1268)
........+|+||-|++++++.|+.+|.- | .++..+|||||||||||++|++||++.
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------- 492 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------- 492 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----------
Confidence 33556677899999999999999988752 2 566899999999999999999999997
Q ss_pred CCcccccccccCCCccEEEEcCCC------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-----------
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTN------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK----------- 591 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e----------- 591 (1268)
+.+|+.+.+++ ..+...|++++..++..+|. |||+||+|.+...
T Consensus 493 -------------~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~------IiFfDEiDsi~~~R~g~~~~v~~R 553 (693)
T KOG0730|consen 493 -------------GMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPC------IIFFDEIDALAGSRGGSSSGVTDR 553 (693)
T ss_pred -------------cCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCe------EEehhhHHhHhhccCCCccchHHH
Confidence 56888876654 12346799999999987654 9999999988532
Q ss_pred HHHHHHHHHcCC--CCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHH
Q 000818 592 TWLAFLKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPD-ALDLIAL 665 (1268)
Q Consensus 592 a~naLLK~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~d-ALelLA~ 665 (1268)
..+.||.-|+.. ..+|++|.+||.++.|+++|++ |+.. |++++|+.+....+|+..+++.. ++++ .++.||+
T Consensus 554 VlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~ 631 (693)
T KOG0730|consen 554 VLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQ 631 (693)
T ss_pred HHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHH
Confidence 367777777633 3589999999999999999999 7754 88888888888889988886654 4444 6788888
Q ss_pred HcCC-CHHHHHHHHHHHHHh
Q 000818 666 NADG-SLRDAETMLDQLSLL 684 (1268)
Q Consensus 666 ~S~G-DLRdAinlLEqLsll 684 (1268)
.+.| +-+++..+++.++.+
T Consensus 632 ~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 632 ATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred HhccCChHHHHHHHHHHHHH
Confidence 7755 455566666666544
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=183.44 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=157.5
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
+.|+++.||..++++|||++.++.+...+.+++. +.+||+||||||||++|+.||+.+.... .|.
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~-~n~lLvG~pGvGKTal~~~La~~i~~~~----v~~---------- 239 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQ-NNPILTGEAGVGKTAVVEGLALRIAAGD----VPP---------- 239 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCc-CceeEECCCCCCHHHHHHHHHHHHhhCC----CCc----------
Confidence 6799999999999999999999999988877764 6789999999999999999999984311 010
Q ss_pred cCCCccEEEEcCCC------CcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHcC
Q 000818 539 SGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------KTWLAFLKFLEE 602 (1268)
Q Consensus 539 sG~s~dfIEIDaSs------~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------ea~naLLK~LEe 602 (1268)
.-.+..++.++... ..| ...++.+++++... +...|+||||+|.|.. ++.|.|+.+|+.
T Consensus 240 ~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~-----~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~ 314 (852)
T TIGR03345 240 ALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS-----PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR 314 (852)
T ss_pred cccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc-----CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC
Confidence 00133455444322 221 25788888887532 2456999999999963 345678889987
Q ss_pred CCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC---
Q 000818 603 PPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----ENLNVEPDALDLIALNADGS--- 670 (1268)
Q Consensus 603 pp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----Egi~Id~dALelLA~~S~GD--- 670 (1268)
+ .+.+|++||..+ .++++|.+||+.|.|.+|+.++...+|+.+... .++.|+++|+..++..+.+-
T Consensus 315 G--~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~ 392 (852)
T TIGR03345 315 G--ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPG 392 (852)
T ss_pred C--CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccc
Confidence 6 889999999753 478999999999999999999999997666543 36889999999999999654
Q ss_pred ---HHHHHHHHHHHHH
Q 000818 671 ---LRDAETMLDQLSL 683 (1268)
Q Consensus 671 ---LRdAinlLEqLsl 683 (1268)
+..|+.+|+.++.
T Consensus 393 r~LPDKAIdlldea~a 408 (852)
T TIGR03345 393 RQLPDKAVSLLDTACA 408 (852)
T ss_pred ccCccHHHHHHHHHHH
Confidence 5579999998754
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=164.92 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=140.0
Q ss_pred ccccCcHHHHHHHHHHHH----------cC----CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 471 DELIGQNIVVQSLVNTIS----------RG----RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIk----------sg----Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.+++|.+.+++.|...+. .| ....++||+||||||||++|+++|+.+......
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~------------- 88 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV------------- 88 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc-------------
Confidence 468999999988766432 11 123479999999999999999999998422110
Q ss_pred cccCCCccEEEEcCCCCc------ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHc
Q 000818 537 FISGKSRNFMEVDGTNKK------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLL---------PSKTWLAFLKFLE 601 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~------gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~L---------S~ea~naLLK~LE 601 (1268)
....|+++++.+.. ....++.+++.+. ..|+||||++.| ..+.++.|++.|+
T Consensus 89 ----~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---------~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 89 ----RKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---------GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred ----ccceEEEecHHHHhHhhcccchHHHHHHHHHcc---------CcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 01235555532210 1133445555432 249999999987 3556889999999
Q ss_pred CCCCcEEEEEEeCCC--C---Ccchhhhccee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------c
Q 000818 602 EPPQRVVFIFITTDI--D---NVPRSIQSRCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN--------A 667 (1268)
Q Consensus 602 epp~~vVfILaTn~~--e---KL~pAL~SRcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~--------S 667 (1268)
....++++|++++.. + .+.|++.+|+. .|.|++++.+++..++...+++.+..++++++..+..+ .
T Consensus 156 ~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~ 235 (284)
T TIGR02880 156 NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPH 235 (284)
T ss_pred cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCC
Confidence 888888888887654 2 34789999995 59999999999999999999999999999999988876 2
Q ss_pred CCCHHHHHHHHHHHHHh
Q 000818 668 DGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 668 ~GDLRdAinlLEqLsll 684 (1268)
.||.|.+.|+++++...
T Consensus 236 ~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 236 FANARSIRNAIDRARLR 252 (284)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 69999999999998654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=156.61 Aligned_cols=200 Identities=14% Similarity=0.221 Sum_probs=139.5
Q ss_pred CCCcccc-CcHHHH-HHHHHHHHc--CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 468 IFFDELI-GQNIVV-QSLVNTISR--GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 468 ~tFdDLV-GQe~vv-~tLk~aIks--gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
.+|++++ |..... ..+.++... +...+.++||||+|+|||+++++++.++... +.
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~---------------------~~ 74 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR---------------------GE 74 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---------------------CC
Confidence 4788887 443332 333333332 1123578999999999999999999887311 22
Q ss_pred cEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcCCCC-cEEEEEEeCCC-C--
Q 000818 544 NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEEPPQ-RVVFIFITTDI-D-- 617 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEepp~-~vVfILaTn~~-e-- 617 (1268)
.+++++..+. +.....+++.+.. ..+++|||++.+.. .....|..+++.... +..+|++++.. .
T Consensus 75 ~v~y~~~~~~--~~~~~~~~~~~~~--------~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l 144 (234)
T PRK05642 75 PAVYLPLAEL--LDRGPELLDNLEQ--------YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred cEEEeeHHHH--HhhhHHHHHhhhh--------CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHc
Confidence 4455554321 1112234444432 23899999998853 334556666653221 34456666543 2
Q ss_pred -Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---Hh-CCccC
Q 000818 618 -NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS---LL-GKRIT 689 (1268)
Q Consensus 618 -KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLs---ll-gk~IT 689 (1268)
.+.+.|+||+ .++.+.+++.++...+|+..+...++.++++++++|+....+|+|.+++.|+.+. +. +++||
T Consensus 145 ~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it 224 (234)
T PRK05642 145 PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLT 224 (234)
T ss_pred CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCC
Confidence 2478999999 7799999999999999998888889999999999999999999999999999884 23 57899
Q ss_pred HHHHHHHhc
Q 000818 690 SSLVNELVG 698 (1268)
Q Consensus 690 ~edV~eLVG 698 (1268)
...|+++++
T Consensus 225 ~~~~~~~L~ 233 (234)
T PRK05642 225 IPFLKETLG 233 (234)
T ss_pred HHHHHHHhc
Confidence 999998875
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=153.82 Aligned_cols=185 Identities=18% Similarity=0.285 Sum_probs=130.1
Q ss_pred CCcccc-C--cHHHHHHHHHHHHc-CCCC--CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 469 FFDELI-G--QNIVVQSLVNTISR-GRIA--PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 469 tFdDLV-G--Qe~vv~tLk~aIks-gRi~--~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
+|+++| | +..+...+.++... +.-+ +.++||||+|+|||++++++++..+
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~------------------------ 69 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN------------------------ 69 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC------------------------
Confidence 678876 3 34566777776653 2111 5689999999999999999876652
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC--Ccc
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID--NVP 620 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e--KL~ 620 (1268)
..+ +..... .+ ... ....+++|||+|.+.....-.+...+.+.. ..++|.+++.+. .+
T Consensus 70 ~~~--~~~~~~--~~-------~~~-------~~~d~lliDdi~~~~~~~lf~l~N~~~e~g-~~ilits~~~p~~l~l- 129 (214)
T PRK06620 70 AYI--IKDIFF--NE-------EIL-------EKYNAFIIEDIENWQEPALLHIFNIINEKQ-KYLLLTSSDKSRNFTL- 129 (214)
T ss_pred CEE--cchhhh--ch-------hHH-------hcCCEEEEeccccchHHHHHHHHHHHHhcC-CEEEEEcCCCccccch-
Confidence 111 111000 00 111 123489999999876444334444443331 334444444443 35
Q ss_pred hhhhccee---EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCccCHHHH
Q 000818 621 RSIQSRCQ---KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL----LGKRITSSLV 693 (1268)
Q Consensus 621 pAL~SRcq---~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl----lgk~IT~edV 693 (1268)
+.|+||+. ++.+.+++.+++..++++.+...++.++++++++|+..+.||+|.+++.|+.+.. .++.||.+.|
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~ 209 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLV 209 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999998 8999999999999999999998999999999999999999999999999999843 2467999999
Q ss_pred HHHh
Q 000818 694 NELV 697 (1268)
Q Consensus 694 ~eLV 697 (1268)
++++
T Consensus 210 ~~~l 213 (214)
T PRK06620 210 KEVL 213 (214)
T ss_pred HHHh
Confidence 8875
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=167.96 Aligned_cols=196 Identities=21% Similarity=0.278 Sum_probs=150.3
Q ss_pred CCCCccccCcHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk-----------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
-.+|+|+.|-+++.+.|.+.+. .|+++..+||+||||||||.+||++|.+.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------------------ 361 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------------------ 361 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------------------
Confidence 5689999999999998888764 68999999999999999999999999876
Q ss_pred ccccCCCccEEEEcCCC------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHH
Q 000818 536 DFISGKSRNFMEVDGTN------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-----------SKTWLAFLK 598 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-----------~ea~naLLK 598 (1268)
+.+|+...+++ ..|..++|+|+..+....|+ ||||||+|.+. ....|.||-
T Consensus 362 ------~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APc------IIFIDEiDavG~kR~~~~~~y~kqTlNQLLv 429 (752)
T KOG0734|consen 362 ------GVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPC------IIFIDEIDAVGGKRNPSDQHYAKQTLNQLLV 429 (752)
T ss_pred ------CCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCe------EEEEechhhhcccCCccHHHHHHHHHHHHHH
Confidence 33444444333 13457899999999887765 99999999884 234678888
Q ss_pred HHcCC--CCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCC-C
Q 000818 599 FLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENL--NVEPDALDLIALNADG-S 670 (1268)
Q Consensus 599 ~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi--~Id~dALelLA~~S~G-D 670 (1268)
-|+.. ...+++|.+||.++.|+++|.+ |+.+ |..+.|+..-..++|...+.+--. ++| +..||+-+.| +
T Consensus 430 EmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD---~~iiARGT~GFs 506 (752)
T KOG0734|consen 430 EMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVD---PKIIARGTPGFS 506 (752)
T ss_pred HhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCC---HhHhccCCCCCc
Confidence 88754 4679999999999999999997 5655 888888887788888877766422 344 4456776644 5
Q ss_pred HHHHHHHHHHHHHh-----CCccCHHHHHH
Q 000818 671 LRDAETMLDQLSLL-----GKRITSSLVNE 695 (1268)
Q Consensus 671 LRdAinlLEqLsll-----gk~IT~edV~e 695 (1268)
-.++.|++.|++++ ...+|+.+++.
T Consensus 507 GAdLaNlVNqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 507 GADLANLVNQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred hHHHHHHHHHHHHHHHhcCcccccHHHHhh
Confidence 66788999998776 34677776653
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=166.38 Aligned_cols=222 Identities=19% Similarity=0.251 Sum_probs=154.1
Q ss_pred hhchhhhhhcCCCCCccccCcHHHHHHHHHHHH-----cCCCC-CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCC
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTIS-----RGRIA-PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529 (1268)
Q Consensus 456 ~~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIk-----sgRi~-~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg 529 (1268)
...+.|++||+|.+.+||..|...+..++.|++ ..+.. ..+||+||+|+||||+++.|+++++-+..++.+|..
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~ 146 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN 146 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc
Confidence 345679999999999999999999999999998 44443 478999999999999999999999877777766542
Q ss_pred C--cccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHc-CC-----CCCCCCcEEEEEeCCCCCCH-----HHHHHH
Q 000818 530 Y--CRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA-GL-----PSASPRFKVFVIDECHLLPS-----KTWLAF 596 (1268)
Q Consensus 530 ~--C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~-~p-----p~~~g~~KVIIIDEaD~LS~-----ea~naL 596 (1268)
. -...+... .+.. ++ ....++.+..+++.+.. .. .-..+.+++|+|||+..... ..++.|
T Consensus 147 ~~~~~~~h~~t-----~~~~-~~-~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL 219 (634)
T KOG1970|consen 147 LKEPENLHNET-----SFLM-FP-YQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL 219 (634)
T ss_pred ccccccccccc-----hhcc-cc-hhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence 1 00000000 0000 00 01123444444444411 11 01235667999999887642 235566
Q ss_pred HHHHcCCCCcEEEEEEeCCC------C-Ccchhhhc--ceeEEEecCCCHHHHHHHHHHHHHhcCCCCC------HHHHH
Q 000818 597 LKFLEEPPQRVVFIFITTDI------D-NVPRSIQS--RCQKYLFNKIKDGDIVARLRKISAEENLNVE------PDALD 661 (1268)
Q Consensus 597 LK~LEepp~~vVfILaTn~~------e-KL~pAL~S--Rcq~I~F~pLs~eEI~~iL~kiakkEgi~Id------~dALe 661 (1268)
..++..+...+|||++-... . .++..+.. |...|.|+|+.+.-+.+.|..||..++.... ...++
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 66666666667666654332 1 24444544 5566999999999999999999999987776 67789
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Q 000818 662 LIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 662 lLA~~S~GDLRdAinlLEqLsll 684 (1268)
.|+..++||+|.|++.|+.-+..
T Consensus 300 ~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred HHHHhcCccHHHHHhHhhhhccc
Confidence 99999999999999999877543
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=174.62 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=148.3
Q ss_pred CCCCccccCcHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk-----------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
..+|+||+|.+++++.|...+. ..+++..+||+||||||||++|+++|..+.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~----------------- 241 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE----------------- 241 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----------------
Confidence 4689999999998888776652 234467899999999999999999998872
Q ss_pred ccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------------HHHHH
Q 000818 536 DFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTWLA 595 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------------ea~na 595 (1268)
.+|+.++++.. .+...++.+++.+....| .||||||+|.+.. ...+.
T Consensus 242 -------~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P------~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~ 308 (638)
T CHL00176 242 -------VPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSP------CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQ 308 (638)
T ss_pred -------CCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCC------cEEEEecchhhhhcccCCCCCCcHHHHHHHHH
Confidence 23444443321 123567788888765433 4999999998842 23456
Q ss_pred HHHHHcCC--CCcEEEEEEeCCCCCcchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Q 000818 596 FLKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RC-QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG- 669 (1268)
Q Consensus 596 LLK~LEep--p~~vVfILaTn~~eKL~pAL~S--Rc-q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G- 669 (1268)
||..++.. ..++++|++||.++.+++++++ |+ ..+.|..|+.++...+|+..+....+ .++..+..|+..+.|
T Consensus 309 LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 309 LLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGF 387 (638)
T ss_pred HHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCC
Confidence 66666542 3478899999999999999997 44 45999999999999999998877433 345678899998877
Q ss_pred CHHHHHHHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 670 SLRDAETMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 670 DLRdAinlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
+.+++.+++..+++. ...||.+++.+++..
T Consensus 388 sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 388 SGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 777777777766543 246888888877643
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-14 Score=168.27 Aligned_cols=202 Identities=16% Similarity=0.141 Sum_probs=145.3
Q ss_pred CCCCccccCcHHHHHHHHHHHH---------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS---------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk---------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
..+|+||.|.+.+++.|..... .-..+..+|||||||||||.+|+++|..+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-------------------- 283 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-------------------- 283 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--------------------
Confidence 4579999999988877765321 12456789999999999999999999998
Q ss_pred ccCCCccEEEEcCCCC----c--ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHH
Q 000818 538 ISGKSRNFMEVDGTNK----K--GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS------------KTWLAFLKF 599 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~----~--gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~------------ea~naLLK~ 599 (1268)
+.+++.++.... . +...++.+++.+....| .||||||+|.+.. ...+.|+..
T Consensus 284 ----~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P------~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~ 353 (489)
T CHL00195 284 ----QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSP------CILWIDEIDKAFSNSESKGDSGTTNRVLATFITW 353 (489)
T ss_pred ----CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCC------cEEEehhhhhhhccccCCCCchHHHHHHHHHHHH
Confidence 346666664321 1 23467888887765443 3999999997632 124667888
Q ss_pred HcCCCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCC-CHHHH
Q 000818 600 LEEPPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLN-VEPDALDLIALNADG-SLRDA 674 (1268)
Q Consensus 600 LEepp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~-Id~dALelLA~~S~G-DLRdA 674 (1268)
|++....+++|++||+++.|++++++ |+.. |.|..|+.++...+++..+.+.+.. ..+..+..|+..+.| +.+++
T Consensus 354 l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI 433 (489)
T CHL00195 354 LSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEI 433 (489)
T ss_pred HhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHH
Confidence 88776778889999999999999987 7754 8899999999999999888775432 345567888888755 44444
Q ss_pred HHHHHHHHH----hCCccCHHHHHHHhc
Q 000818 675 ETMLDQLSL----LGKRITSSLVNELVG 698 (1268)
Q Consensus 675 inlLEqLsl----lgk~IT~edV~eLVG 698 (1268)
.+.+..+.. .++.||.+++...+.
T Consensus 434 ~~lv~eA~~~A~~~~~~lt~~dl~~a~~ 461 (489)
T CHL00195 434 EQSIIEAMYIAFYEKREFTTDDILLALK 461 (489)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 444444432 245677777766554
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=161.51 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=142.5
Q ss_pred CCcccc-Cc--HHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 469 FFDELI-GQ--NIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 469 tFdDLV-GQ--e~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
+|++++ |. ..+...++.+... +...+.++||||+|+|||++++++++++....+ ...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-------------------~~~ 180 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNP-------------------NAK 180 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCC-------------------CCe
Confidence 788865 43 3345555555543 233356899999999999999999999843211 235
Q ss_pred EEEEcCCCCcC--hHH-----HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcCCC-CcEEEEEEeC
Q 000818 545 FMEVDGTNKKG--LDR-----VRYILKHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEEPP-QRVVFIFITT 614 (1268)
Q Consensus 545 fIEIDaSs~~g--Id~-----IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEepp-~~vVfILaTn 614 (1268)
++.+++.+... +.. +..+.+.+. ...||||||+|.+... .+..|+.+++..- ....+|++++
T Consensus 181 v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 181 VVYVTSEKFTNDFVNALRNNTMEEFKEKYR--------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred EEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 56665543100 011 112222222 2349999999998542 3445555443211 1233566666
Q ss_pred CCC----Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh---
Q 000818 615 DID----NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--- 684 (1268)
Q Consensus 615 ~~e----KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll--- 684 (1268)
.+. .+.+.|.+|+ ..+.|.+|+.+++..+|+..+...++.++++++++|+..+.||+|.++..|.++..+
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASL 332 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHh
Confidence 543 3668899999 469999999999999999999999999999999999999999999999999988643
Q ss_pred -CCccCHHHHHHHhccc
Q 000818 685 -GKRITSSLVNELVGVV 700 (1268)
Q Consensus 685 -gk~IT~edV~eLVG~v 700 (1268)
++.||.+.+.+++...
T Consensus 333 ~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 333 TGKPITLELAKEALKDL 349 (450)
T ss_pred hCCCCCHHHHHHHHHHh
Confidence 5789999999988643
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-14 Score=167.34 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=142.6
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC 528 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PC 528 (1268)
..+++.+.+|+||.|.+..++.|.+++.- -..+.++|||||||||||++|+++|..+.
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~---------- 242 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS---------- 242 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC----------
Confidence 45677778999999999999999988752 23456899999999999999999999872
Q ss_pred CCcccccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------H
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------K 591 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------e 591 (1268)
..|+.+.+++. .+...++.+++.+... ...||||||+|.+.. +
T Consensus 243 --------------~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~------~P~ILfIDEID~l~~kR~~~~sgg~~e 302 (438)
T PTZ00361 243 --------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN------APSIVFIDEIDAIGTKRYDATSGGEKE 302 (438)
T ss_pred --------------CCEEEEecchhhhhhcchHHHHHHHHHHHHHhC------CCcEEeHHHHHHHhccCCCCCCcccHH
Confidence 24455544331 1223466677666543 234999999987631 1
Q ss_pred HHH---HHHHHHcC--CCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000818 592 TWL---AFLKFLEE--PPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLI 663 (1268)
Q Consensus 592 a~n---aLLK~LEe--pp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelL 663 (1268)
.+. .|+..|+. ...++.||++||.++.+++++++ |+.. |.|.+|+.++...+|+..+.+..+.-+ ..+..+
T Consensus 303 ~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-vdl~~l 381 (438)
T PTZ00361 303 IQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-VDLEEF 381 (438)
T ss_pred HHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-cCHHHH
Confidence 223 34444442 24578999999999999999985 6654 999999999999999988776654322 124445
Q ss_pred HHHcC-CCHHHHHHHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 664 ALNAD-GSLRDAETMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 664 A~~S~-GDLRdAinlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
+..+. -+..++.+++..+... ...|+.+++.+++..
T Consensus 382 a~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 382 IMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 54443 3444455555544332 246888888876644
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=155.90 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=103.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC------------CCcchhhhcceeEEEecCCCHHHHHHHHHH
Q 000818 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI------------DNVPRSIQSRCQKYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 579 VIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~------------eKL~pAL~SRcq~I~F~pLs~eEI~~iL~k 646 (1268)
|+||||+|+|.-++|..|.+.||+.-.. ++||+||.- +-+|..++.|..+|...|++.+++..+|+.
T Consensus 294 VLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450)
T COG1224 294 VLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450)
T ss_pred eEEEechhhhhHHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence 8999999999999999999999987544 577888753 357999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHhc
Q 000818 647 ISAEENLNVEPDALDLIALNA-DGSLRDAETMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 647 iakkEgi~Id~dALelLA~~S-~GDLRdAinlLEqLsll-----gk~IT~edV~eLVG 698 (1268)
.|+++++.++++|+++|+... .-++|.|+++|.-+... .+.|..++|+.+..
T Consensus 373 Ra~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred hhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 999999999999999999976 67999999999855322 35899999987653
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=161.69 Aligned_cols=204 Identities=19% Similarity=0.259 Sum_probs=140.0
Q ss_pred CCcccc-CcHH--HHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 469 FFDELI-GQNI--VVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 469 tFdDLV-GQe~--vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
+|++++ |... +...+...... +...+.++||||+|+|||++++++++++....+ ...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~-------------------~~~ 168 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNP-------------------NAK 168 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-------------------CCc
Confidence 688844 6433 33444444443 223357899999999999999999999843211 234
Q ss_pred EEEEcCCCCcC--hH-----HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcCC-CCcEEEEEEeC
Q 000818 545 FMEVDGTNKKG--LD-----RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEEP-PQRVVFIFITT 614 (1268)
Q Consensus 545 fIEIDaSs~~g--Id-----~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEep-p~~vVfILaTn 614 (1268)
++.+++.+... +. .+..+.+.+. ...||||||+|.+... .+..|+.+++.. .....+|++++
T Consensus 169 v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 169 VVYVSSEKFTNDFVNALRNNKMEEFKEKYR--------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred EEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 55555432100 00 0111222222 2349999999998642 345565555421 11234666766
Q ss_pred CCC----Ccchhhhccee---EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh---
Q 000818 615 DID----NVPRSIQSRCQ---KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--- 684 (1268)
Q Consensus 615 ~~e----KL~pAL~SRcq---~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll--- 684 (1268)
... .+.+.+.+|+. .+.|.+|+.+++..+|+..+...++.++++++++|+....+|+|.++..|.++..+
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL 320 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 542 46688999984 69999999999999999999999999999999999999999999999888888543
Q ss_pred -CCccCHHHHHHHhcc
Q 000818 685 -GKRITSSLVNELVGV 699 (1268)
Q Consensus 685 -gk~IT~edV~eLVG~ 699 (1268)
++.||.+.+.+++..
T Consensus 321 ~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 321 TGKPITLELAKEALKD 336 (405)
T ss_pred hCCCCCHHHHHHHHHH
Confidence 578999999888753
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-14 Score=166.46 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=140.6
Q ss_pred CCccccCcHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 469 FFDELIGQNIVVQSLVNTISR-----------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIks-----------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
.|.||-|.+..+..|...|.- -+++..+|||||||||||.+|++||.++
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-------------------- 247 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-------------------- 247 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--------------------
Confidence 599999999999888877642 3456789999999999999999999998
Q ss_pred ccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH-----------HHHHHHHH
Q 000818 538 ISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT-----------WLAFLKFL 600 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea-----------~naLLK~L 600 (1268)
+.+|+.|.+.+. .....||++++++....|+ ||||||+|.+.+.. ...||..|
T Consensus 248 ----~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPc------ivFiDeIDAI~pkRe~aqreMErRiVaQLlt~m 317 (802)
T KOG0733|consen 248 ----GVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPC------IVFIDEIDAITPKREEAQREMERRIVAQLLTSM 317 (802)
T ss_pred ----CCceEeecchhhhcccCcccHHHHHHHHHHHhccCCe------EEEeecccccccchhhHHHHHHHHHHHHHHHhh
Confidence 678888887652 2356899999999877665 99999999997532 45677777
Q ss_pred cCC------CCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH
Q 000818 601 EEP------PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSL 671 (1268)
Q Consensus 601 Eep------p~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDL 671 (1268)
++. ...|++|.+||+|+.|+++|++ |+.. |.+.-|+..+...+|+.+|+...+.- +-.+..||..+.|-+
T Consensus 318 D~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 318 DELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFV 396 (802)
T ss_pred hcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCcc
Confidence 753 2569999999999999999997 5544 88999999999999999997665433 223567888887765
Q ss_pred HHHHHHH
Q 000818 672 RDAETML 678 (1268)
Q Consensus 672 RdAinlL 678 (1268)
..-+..|
T Consensus 397 GADL~AL 403 (802)
T KOG0733|consen 397 GADLMAL 403 (802)
T ss_pred chhHHHH
Confidence 5443333
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=160.74 Aligned_cols=202 Identities=19% Similarity=0.232 Sum_probs=140.8
Q ss_pred CCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
..+|+||.|.+.+++.|...+.. ...+..+|||||||||||++|+++|..+.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~---------------- 190 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---------------- 190 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC----------------
Confidence 45799999999999999887742 24457899999999999999999999873
Q ss_pred cccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHH
Q 000818 535 NDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-----------SKTWLAFL 597 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-----------~ea~naLL 597 (1268)
..|+.++++.. .+...++.+++.+.... ..||||||+|.|. .+.+..|+
T Consensus 191 --------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~------p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~ 256 (389)
T PRK03992 191 --------ATFIRVVGSELVQKFIGEGARLVRELFELAREKA------PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLM 256 (389)
T ss_pred --------CCEEEeehHHHhHhhccchHHHHHHHHHHHHhcC------CeEEEEechhhhhcccccCCCCccHHHHHHHH
Confidence 34555554431 11234566776665432 3499999999983 23344455
Q ss_pred HHH---cC--CCCcEEEEEEeCCCCCcchhhhc--cee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Q 000818 598 KFL---EE--PPQRVVFIFITTDIDNVPRSIQS--RCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG 669 (1268)
Q Consensus 598 K~L---Ee--pp~~vVfILaTn~~eKL~pAL~S--Rcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G 669 (1268)
.++ +. ...+++||++||.++.+++++++ |+. .|.|++|+.++...+|+..+....+.- ...+..|+..+.|
T Consensus 257 ~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g 335 (389)
T PRK03992 257 QLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEG 335 (389)
T ss_pred HHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCC
Confidence 544 32 23478999999999999999986 665 499999999999999998876554431 1235667777755
Q ss_pred -CHHHHHHHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 670 -SLRDAETMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 670 -DLRdAinlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
..+++..++..+... ...|+.+++.+++..
T Consensus 336 ~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 336 ASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 445555666555433 245777777766543
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=160.10 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=140.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
...+|+||.|.+.+++.|..++.. -..+..+|||||||||||++|+++|..+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--------------- 204 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--------------- 204 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC---------------
Confidence 356899999999999999887741 13457899999999999999999999873
Q ss_pred ccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HH---H
Q 000818 534 CNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KT---W 593 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea---~ 593 (1268)
..|+.+.+... .+...+++++..+... ...||||||+|.+.. .. .
T Consensus 205 ---------~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~------~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l 269 (398)
T PTZ00454 205 ---------ATFIRVVGSEFVQKYLGEGPRMVRDVFRLAREN------APSIIFIDEVDSIATKRFDAQTGADREVQRIL 269 (398)
T ss_pred ---------CCEEEEehHHHHHHhcchhHHHHHHHHHHHHhc------CCeEEEEECHhhhccccccccCCccHHHHHHH
Confidence 23444433221 1123466677666543 235999999998732 12 3
Q ss_pred HHHHHHHcC--CCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Q 000818 594 LAFLKFLEE--PPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNAD 668 (1268)
Q Consensus 594 naLLK~LEe--pp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~ 668 (1268)
..|+..++. ...++++|++||.++.+++++++ |+.. |.|+.|+.++...+++.++.+.++.-+ -.+..|+..+.
T Consensus 270 ~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-vd~~~la~~t~ 348 (398)
T PTZ00454 270 LELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-VDLEDFVSRPE 348 (398)
T ss_pred HHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-cCHHHHHHHcC
Confidence 345555553 23578899999999999999987 6644 999999999999999888877665422 23556677664
Q ss_pred C-CHHHHHHHHHHHHHh-----CCccCHHHHHHHhc
Q 000818 669 G-SLRDAETMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 669 G-DLRdAinlLEqLsll-----gk~IT~edV~eLVG 698 (1268)
| +.+++.+++..+... ...|+.+++.+.+.
T Consensus 349 g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 349 KISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4 566666777666543 23677777766653
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=151.75 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=134.2
Q ss_pred CCCccccC---cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 468 IFFDELIG---QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 468 ~tFdDLVG---Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
.+|++++. +..++..+.++. +...+.++|+||+|+|||++++++++...
T Consensus 18 ~~~~~Fi~~~~N~~a~~~l~~~~--~~~~~~l~l~G~~GsGKThLl~~~~~~~~-------------------------- 69 (226)
T PRK09087 18 YGRDDLLVTESNRAAVSLVDHWP--NWPSPVVVLAGPVGSGKTHLASIWREKSD-------------------------- 69 (226)
T ss_pred CChhceeecCchHHHHHHHHhcc--cCCCCeEEEECCCCCCHHHHHHHHHHhcC--------------------------
Confidence 37999884 344555555443 23346799999999999999999886641
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCC-cEEEEEEeCCCC----Cc
Q 000818 545 FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ-RVVFIFITTDID----NV 619 (1268)
Q Consensus 545 fIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~-~vVfILaTn~~e----KL 619 (1268)
+..++.... ..+++..+.. .+|+|||++.+.. .+.+|..++..... ...+|++++... ..
T Consensus 70 ~~~i~~~~~-----~~~~~~~~~~---------~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~ 134 (226)
T PRK09087 70 ALLIHPNEI-----GSDAANAAAE---------GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVK 134 (226)
T ss_pred CEEecHHHc-----chHHHHhhhc---------CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccc
Confidence 113332210 1122222221 3799999998742 23444444432111 345666665442 24
Q ss_pred chhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---Hh-CCccCHHH
Q 000818 620 PRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS---LL-GKRITSSL 692 (1268)
Q Consensus 620 ~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLs---ll-gk~IT~ed 692 (1268)
.+.|+||+ .++.+.+++.+++..+|++.+...++.++++++++|++.+.|++|.++..|+++. +. +++||...
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~ 214 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRAL 214 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 78899999 7899999999999999999999999999999999999999999999998777774 33 67899999
Q ss_pred HHHHhccc
Q 000818 693 VNELVGVV 700 (1268)
Q Consensus 693 V~eLVG~v 700 (1268)
|++++..+
T Consensus 215 ~~~~l~~~ 222 (226)
T PRK09087 215 AAEVLNEM 222 (226)
T ss_pred HHHHHHhh
Confidence 99988653
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=170.38 Aligned_cols=186 Identities=20% Similarity=0.230 Sum_probs=137.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
...+|+||.|++.+++.|...+. ..+.+..+|||||||||||++|+++|.++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---------------- 511 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---------------- 511 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------------
Confidence 35589999999999999988775 23455689999999999999999999987
Q ss_pred ccccccCCCccEEEEcCCCC----c--ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC------------HHHHHH
Q 000818 534 CNDFISGKSRNFMEVDGTNK----K--GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP------------SKTWLA 595 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~----~--gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS------------~ea~na 595 (1268)
+.+|+.+.+++. . ....++.+++.+.... ..||||||+|.|. ....+.
T Consensus 512 --------~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~------p~iifiDEid~l~~~r~~~~~~~~~~~~~~~ 577 (733)
T TIGR01243 512 --------GANFIAVRGPEILSKWVGESEKAIREIFRKARQAA------PAIIFFDEIDAIAPARGARFDTSVTDRIVNQ 577 (733)
T ss_pred --------CCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcC------CEEEEEEChhhhhccCCCCCCccHHHHHHHH
Confidence 346677765431 1 1345788888876543 3599999999873 224677
Q ss_pred HHHHHcC--CCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Q 000818 596 FLKFLEE--PPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG- 669 (1268)
Q Consensus 596 LLK~LEe--pp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G- 669 (1268)
|+..|+. ...++++|++||.++.|++++++ ||.. +.|++|+.++...+++....+..+. ++..+..||..+.|
T Consensus 578 lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~ 656 (733)
T TIGR01243 578 LLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGY 656 (733)
T ss_pred HHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCC
Confidence 8888873 45689999999999999999996 8865 8899999988888887665443322 22347788888876
Q ss_pred CHHHHHHHHHHHH
Q 000818 670 SLRDAETMLDQLS 682 (1268)
Q Consensus 670 DLRdAinlLEqLs 682 (1268)
+-.++.+++..++
T Consensus 657 sgadi~~~~~~A~ 669 (733)
T TIGR01243 657 TGADIEAVCREAA 669 (733)
T ss_pred CHHHHHHHHHHHH
Confidence 3344555555444
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=151.19 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=113.9
Q ss_pred CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeE---
Q 000818 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQK--- 629 (1268)
Q Consensus 553 ~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~--- 629 (1268)
..+++++|++++.+...+ ...+ +||+++|+|+..++|+|||+||+||.+++||++|+.+.++++||+|||++
T Consensus 36 ~i~Vd~iReii~~~~~~~----~~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~ 110 (206)
T PRK08485 36 EFKIEDAKEVIAEAYIAE----SEEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKR 110 (206)
T ss_pred CCCHHHHHHHHHHHhhCC----CCcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccc
Confidence 578999999999998764 2344 46889999999999999999999999999999999999999999999986
Q ss_pred ----------EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000818 630 ----------YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 630 ----------I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll 684 (1268)
+.|.+++..++..+|.+ ..++++..+.++++.|+..+.|.+|+++.+.++...+
T Consensus 111 ~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 111 KQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred cccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 77899999999999999 7888888899999999999999999999888876544
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=157.71 Aligned_cols=103 Identities=25% Similarity=0.330 Sum_probs=81.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC------------CCcchhhhcceeEEEecCCCHHHHHHHHHH
Q 000818 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI------------DNVPRSIQSRCQKYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 579 VIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~------------eKL~pAL~SRcq~I~F~pLs~eEI~~iL~k 646 (1268)
|+||||+|+|..+.+..|-+.||.+-.. ++||+||+. +-+|..+++||.++...|++.+++.++|+-
T Consensus 281 VLFIDEvHmLDiEcFsfLnralEs~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 281 VLFIDEVHMLDIECFSFLNRALESELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred eEEecchhhccHHHHHHHHHHhcCCCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 9999999999999999999999987554 577888844 347889999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 000818 647 ISAEENLNVEPDALDLIALNA-DGSLRDAETMLDQLS 682 (1268)
Q Consensus 647 iakkEgi~Id~dALelLA~~S-~GDLRdAinlLEqLs 682 (1268)
+|++|++.++++|+++|.... ..++|.|+++|.-+.
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 999999999999999999876 778999999987654
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=174.63 Aligned_cols=180 Identities=23% Similarity=0.378 Sum_probs=127.4
Q ss_pred cccCcHHHHHHHHHHHHc----CC-CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 472 ELIGQNIVVQSLVNTISR----GR-IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIks----gR-i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
+++|++.+++.+..++.. +. ..+++||+||||||||++|+++|+.++. +|+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~------------------------~~~ 376 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR------------------------KFV 376 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC------------------------CeE
Confidence 488999999998886642 11 2358999999999999999999999842 222
Q ss_pred EEcCCCCc---------------ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHcCC----
Q 000818 547 EVDGTNKK---------------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK----TWLAFLKFLEEP---- 603 (1268)
Q Consensus 547 EIDaSs~~---------------gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e----a~naLLK~LEep---- 603 (1268)
.++..... ....+.+.+..+. ....||||||+|.+... ..++|+.+|+..
T Consensus 377 ~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~-------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~ 449 (775)
T TIGR00763 377 RFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAK-------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNA 449 (775)
T ss_pred EEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhC-------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCc
Confidence 22111100 0123333333322 12339999999999753 358899888630
Q ss_pred -----------CCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHH-----Hh-----cCCCCCHHHHHH
Q 000818 604 -----------PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKIS-----AE-----ENLNVEPDALDL 662 (1268)
Q Consensus 604 -----------p~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kia-----kk-----Egi~Id~dALel 662 (1268)
..+++||++||..+.++++|++||.+|.|.+++.++...+++..+ .+ +++.++++++.+
T Consensus 450 f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~ 529 (775)
T TIGR00763 450 FSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLL 529 (775)
T ss_pred cccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHH
Confidence 146889999999999999999999999999999999888876654 22 245799999999
Q ss_pred HHHHc--CCCHHHHHHHHHHHH
Q 000818 663 IALNA--DGSLRDAETMLDQLS 682 (1268)
Q Consensus 663 LA~~S--~GDLRdAinlLEqLs 682 (1268)
|++.. ...+|.+...+++++
T Consensus 530 i~~~~~~e~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 530 LIKYYTREAGVRNLERQIEKIC 551 (775)
T ss_pred HHHhcChhcCChHHHHHHHHHH
Confidence 99855 345677666666543
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-13 Score=164.28 Aligned_cols=201 Identities=21% Similarity=0.266 Sum_probs=153.8
Q ss_pred CCCCccccCcHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk-----------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
+.+|.|++|.+++++.|.+.+. ..++++.+||+||||||||.+|+++|.+.
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------------------ 368 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 368 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------------------
Confidence 5789999999999999988774 46889999999999999999999999886
Q ss_pred ccccCCCccEEEEcCCC------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---------------HHHHH
Q 000818 536 DFISGKSRNFMEVDGTN------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---------------SKTWL 594 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---------------~ea~n 594 (1268)
+.+|+.+.+++ ..+...+++++..++...|. ||||||+|.+. ...+|
T Consensus 369 ------gVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~------iifideida~~~~r~G~~~~~~~~e~e~tln 436 (774)
T KOG0731|consen 369 ------GVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPS------IIFIDEIDAVGRKRGGKGTGGGQDEREQTLN 436 (774)
T ss_pred ------CCceeeechHHHHHHhcccchHHHHHHHHHhhccCCe------EEEecccccccccccccccCCCChHHHHHHH
Confidence 45677766655 22456889999998876654 99999999874 22367
Q ss_pred HHHHHHcCC--CCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Q 000818 595 AFLKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG 669 (1268)
Q Consensus 595 aLLK~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G 669 (1268)
.||--|+.. ...|+|+.+||+++-|++++++ |+.+ |....|+......++.-.+.+-.+..++..+..||..+.|
T Consensus 437 Qll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~g 516 (774)
T KOG0731|consen 437 QLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPG 516 (774)
T ss_pred HHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCC
Confidence 777777643 3578999999999999999998 5544 8888888888889998888776666566666668888876
Q ss_pred CH-HHHHHHHHHHHHh-----CCccCHHHHHHHh
Q 000818 670 SL-RDAETMLDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 670 DL-RdAinlLEqLsll-----gk~IT~edV~eLV 697 (1268)
.. .++.|++..+++. ...|+..++..++
T Consensus 517 f~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 517 FSGADLANLCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred CcHHHHHhhhhHHHHHHHHhccCccchhhHHHHH
Confidence 43 3444555555443 2466666666555
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=154.88 Aligned_cols=210 Identities=16% Similarity=0.237 Sum_probs=143.5
Q ss_pred CCCCcccc-Cc--HHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 467 PIFFDELI-GQ--NIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 467 P~tFdDLV-GQ--e~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
+.+|+.++ |. ..+...+...+.. +...+.++|||++|+|||++++++++++....+ .
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-------------------~ 171 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFS-------------------D 171 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCC-------------------C
Confidence 46899987 43 2244444444443 333356899999999999999999998742111 3
Q ss_pred ccEEEEcCCCCc--ChHHHH---HHHHHHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCCC-CcEEEEEEeC
Q 000818 543 RNFMEVDGTNKK--GLDRVR---YILKHLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEPP-QRVVFIFITT 614 (1268)
Q Consensus 543 ~dfIEIDaSs~~--gId~IR---eLIEea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEepp-~~vVfILaTn 614 (1268)
..++.+.+.+.. -++.+. ..++.+... .....|+||||++.+. ...++.|..++.... ....+|++++
T Consensus 172 ~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 172 LKVSYMSGDEFARKAVDILQKTHKEIEQFKNE----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred CeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 355556543310 001111 112222111 1234599999999987 445556655554211 1235677776
Q ss_pred CCC----Ccchhhhccee---EEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Q 000818 615 DID----NVPRSIQSRCQ---KYLFNKIKDGDIVARLRKISAEENL--NVEPDALDLIALNADGSLRDAETMLDQLSLL- 684 (1268)
Q Consensus 615 ~~e----KL~pAL~SRcq---~I~F~pLs~eEI~~iL~kiakkEgi--~Id~dALelLA~~S~GDLRdAinlLEqLsll- 684 (1268)
.+. .+.+.|.+|+. .+.+.+|+.+++..+|++.++..|+ .++++++++|+..+.||+|.+++.|.++..+
T Consensus 248 ~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a 327 (450)
T PRK14087 248 KSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWS 327 (450)
T ss_pred CCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 653 36788999984 6999999999999999999998885 6999999999999999999999999998533
Q ss_pred -----CCccCHHHHHHHhcc
Q 000818 685 -----GKRITSSLVNELVGV 699 (1268)
Q Consensus 685 -----gk~IT~edV~eLVG~ 699 (1268)
++.||.+.|.+++..
T Consensus 328 ~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 328 QQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred hcccCCCCCCHHHHHHHHhh
Confidence 268999999988864
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=161.30 Aligned_cols=206 Identities=14% Similarity=0.158 Sum_probs=140.9
Q ss_pred CCCcccc-CcH--HHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 468 IFFDELI-GQN--IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 468 ~tFdDLV-GQe--~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
.+|++++ |.. .+...+.+.+......+.++||||+|+|||++++++++++....+ ...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-------------------~~~ 162 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP-------------------DLR 162 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCC-------------------CCe
Confidence 3799987 532 233444444443222356999999999999999999999842211 235
Q ss_pred EEEEcCCCCc--ChH-----HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcCCC-CcEEEEEEeC
Q 000818 545 FMEVDGTNKK--GLD-----RVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEEPP-QRVVFIFITT 614 (1268)
Q Consensus 545 fIEIDaSs~~--gId-----~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEepp-~~vVfILaTn 614 (1268)
++.+++.+.. -++ .+..+.+... ....|+||||++.+.. ..+..|+.++.... ....+|++++
T Consensus 163 v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 163 VMYITSEKFLNDLVDSMKEGKLNEFREKYR-------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred EEEEEHHHHHHHHHHHHhcccHHHHHHHHH-------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 5565543210 000 0111111111 1345999999998752 23445555543211 1234666665
Q ss_pred CCC----Ccchhhhccee---EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh---
Q 000818 615 DID----NVPRSIQSRCQ---KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--- 684 (1268)
Q Consensus 615 ~~e----KL~pAL~SRcq---~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll--- 684 (1268)
... .+.+.+.||+. .+.|.+|+.+....+|++.+..+++.++++++++|+....||+|.++..|.++..+
T Consensus 236 ~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~ 315 (440)
T PRK14088 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKET 315 (440)
T ss_pred CCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 442 36678999986 79999999999999999999999999999999999999999999999999998543
Q ss_pred -CCccCHHHHHHHhcc
Q 000818 685 -GKRITSSLVNELVGV 699 (1268)
Q Consensus 685 -gk~IT~edV~eLVG~ 699 (1268)
+++||.+.+.+++..
T Consensus 316 ~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 316 TGEEVDLKEAILLLKD 331 (440)
T ss_pred hCCCCCHHHHHHHHHH
Confidence 678999999888854
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=159.97 Aligned_cols=181 Identities=16% Similarity=0.224 Sum_probs=126.6
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC 528 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PC 528 (1268)
..+++.+.+|+||.|.+..++.|+.+|.. -..+..+|||||||||||++|+++|+.+......
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~----- 246 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA----- 246 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-----
Confidence 45677788999999999999999888752 2345789999999999999999999998422110
Q ss_pred CCcccccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-----------
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK----------- 591 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e----------- 591 (1268)
..+....|+.+.+... .....++.+++.+.... ..+...||||||+|.+...
T Consensus 247 ---------~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a--~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~ 315 (512)
T TIGR03689 247 ---------ETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKA--SDGRPVIVFFDEMDSIFRTRGSGVSSDVET 315 (512)
T ss_pred ---------ccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHh--hcCCCceEEEehhhhhhcccCCCccchHHH
Confidence 0011122333332210 11235667777665432 1234569999999987421
Q ss_pred -HHHHHHHHHcCCC--CcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHH
Q 000818 592 -TWLAFLKFLEEPP--QRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPD 658 (1268)
Q Consensus 592 -a~naLLK~LEepp--~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~d 658 (1268)
..+.||..|+... .++++|++||.++.|+++|++ |+.. |.|.+|+.++...+++.++.. .+.++.+
T Consensus 316 ~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 316 TVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred HHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 2467777776432 578999999999999999998 7755 999999999999999888754 3455433
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-13 Score=153.04 Aligned_cols=205 Identities=19% Similarity=0.209 Sum_probs=137.5
Q ss_pred hcCCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCc
Q 000818 464 KYKPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531 (1268)
Q Consensus 464 KYRP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C 531 (1268)
+....+|+||.|.+.+++.|..++.. ...+.++|||||||||||++|+++|..+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------------- 181 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------------- 181 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-------------
Confidence 44566899999999999999988752 13456799999999999999999999873
Q ss_pred ccccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHHH
Q 000818 532 RECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTWL 594 (1268)
Q Consensus 532 ~sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~n 594 (1268)
..|+.+.+... .+...++.+++.+... ...||||||+|.|.. ..+.
T Consensus 182 -----------~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~------~p~il~iDEiD~l~~~~~~~~~~~~~~~~~ 244 (364)
T TIGR01242 182 -----------ATFIRVVGSELVRKYIGEGARLVREIFELAKEK------APSIIFIDEIDAIAAKRTDSGTSGDREVQR 244 (364)
T ss_pred -----------CCEEecchHHHHHHhhhHHHHHHHHHHHHHHhc------CCcEEEhhhhhhhccccccCCCCccHHHHH
Confidence 23344432221 1123355566555432 234999999998832 2233
Q ss_pred HHHHH---HcC--CCCcEEEEEEeCCCCCcchhhhc--cee-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 000818 595 AFLKF---LEE--PPQRVVFIFITTDIDNVPRSIQS--RCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666 (1268)
Q Consensus 595 aLLK~---LEe--pp~~vVfILaTn~~eKL~pAL~S--Rcq-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~ 666 (1268)
.|..+ ++. ...++.||++||.++.+++++++ |+. .|.|..|+.++...+++..+....+.- +..+..|+..
T Consensus 245 ~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~ 323 (364)
T TIGR01242 245 TLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKM 323 (364)
T ss_pred HHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHH
Confidence 44444 442 23578999999999999999986 654 599999999999999988775544321 1235667777
Q ss_pred cCC-CHHHHHHHHHHHHHh-----CCccCHHHHHHHhcc
Q 000818 667 ADG-SLRDAETMLDQLSLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 667 S~G-DLRdAinlLEqLsll-----gk~IT~edV~eLVG~ 699 (1268)
+.| +.+++.+++..+... ...|+.+++.+++..
T Consensus 324 t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 324 TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 755 334444555544332 357888888776643
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=156.05 Aligned_cols=205 Identities=13% Similarity=0.153 Sum_probs=142.6
Q ss_pred CCCcccc-CcHH--HHHHHHHHHHc-----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc
Q 000818 468 IFFDELI-GQNI--VVQSLVNTISR-----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 468 ~tFdDLV-GQe~--vv~tLk~aIks-----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s 539 (1268)
.+|+.++ |... +...+..+... +...+.++||||+|+|||+++++++.++.+.
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~------------------- 168 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES------------------- 168 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------------------
Confidence 3799987 4322 23444444331 2233568999999999999999999998431
Q ss_pred CCCccEEEEcCCCCcChHHHHHHH-----HHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcCC-CCcEEEEE
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYIL-----KHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEEP-PQRVVFIF 611 (1268)
Q Consensus 540 G~s~dfIEIDaSs~~gId~IReLI-----Eea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEep-p~~vVfIL 611 (1268)
+..++++.+... ...+...+ +.+.. ......|+||||+|.+.. ..+..|..++... .....+|+
T Consensus 169 --~~~v~yi~~~~f--~~~~~~~l~~~~~~~f~~----~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIl 240 (445)
T PRK12422 169 --GGKILYVRSELF--TEHLVSAIRSGEMQRFRQ----FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVI 240 (445)
T ss_pred --CCCEEEeeHHHH--HHHHHHHHhcchHHHHHH----HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEE
Confidence 234555554321 01111111 11111 123456999999999864 3345555554311 11345777
Q ss_pred EeCCCC----Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH--
Q 000818 612 ITTDID----NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS-- 682 (1268)
Q Consensus 612 aTn~~e----KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLs-- 682 (1268)
+++... .+.+.|.+|+ ..+.+.+|+.+++..+|++.+...++.++++++++|+....+|+|.+++.|+.++
T Consensus 241 ts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 241 SSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKR 320 (445)
T ss_pred ecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 776642 4678999999 5799999999999999999999999999999999999999999999999999984
Q ss_pred -Hh----CCccCHHHHHHHhcc
Q 000818 683 -LL----GKRITSSLVNELVGV 699 (1268)
Q Consensus 683 -ll----gk~IT~edV~eLVG~ 699 (1268)
.+ +..||.+.+++++..
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHH
Confidence 32 568999999888753
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-13 Score=167.04 Aligned_cols=198 Identities=16% Similarity=0.234 Sum_probs=135.7
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 471 DELIGQNIVVQSLVNTISRG--------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIksg--------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
..|+||++++..|.++|... ++.++|||+||+|||||++|++||+.++|.. .+|..+..+. +....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~----~~~~~~d~s~-~~~~~- 582 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE----DAMIRLDMSE-YMEKH- 582 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc----cceEEEEchh-ccccc-
Confidence 56899999999999998743 2335799999999999999999999997532 1121111111 10000
Q ss_pred ccEEE-E-cCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CCcEEE
Q 000818 543 RNFME-V-DGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQRVVF 609 (1268)
Q Consensus 543 ~dfIE-I-DaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~~vVf 609 (1268)
.+.. + .+..+.|.+....+.+.+...| +.||||||++.++++.++.|+++||++ -.+++|
T Consensus 583 -~~~~l~g~~~gyvg~~~~~~l~~~~~~~p------~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 583 -TVSKLIGSPPGYVGYNEGGQLTEAVRKKP------YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred -cHHHhcCCCCcccCcCccchHHHHHHhCC------CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 0000 0 1112334444455666666433 679999999999999999999999985 257889
Q ss_pred EEEeCCCCC-------------------------------------cchhhhcce-eEEEecCCCHHHHHHHHHHHHHh-
Q 000818 610 IFITTDIDN-------------------------------------VPRSIQSRC-QKYLFNKIKDGDIVARLRKISAE- 650 (1268)
Q Consensus 610 ILaTn~~eK-------------------------------------L~pAL~SRc-q~I~F~pLs~eEI~~iL~kiakk- 650 (1268)
|+++|.... +.|.+++|+ .+|.|.+++.+++.+++...+.+
T Consensus 656 I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 656 IMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred EEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 998774210 346788999 78999999999999988766543
Q ss_pred ------c--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q 000818 651 ------E--NLNVEPDALDLIALNA---DGSLRDAETMLDQL 681 (1268)
Q Consensus 651 ------E--gi~Id~dALelLA~~S---~GDLRdAinlLEqL 681 (1268)
. .+.++++++++|+... .-..|-+...+++.
T Consensus 736 ~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 736 FKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred HHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 2 3568999999999964 22355555555443
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=164.56 Aligned_cols=196 Identities=18% Similarity=0.293 Sum_probs=135.0
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 471 DELIGQNIVVQSLVNTISRG--------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIksg--------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
..|+||+++++.|.+++... ++.++|||+||+|||||++|++||+.+.+... +-.|..+.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~--------~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLE--------RFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeE--------EEeCchhhhccc
Confidence 46789999999999998742 34457999999999999999999999853110 000111100000
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CCcEEEEE
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQRVVFIF 611 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~~vVfIL 611 (1268)
...+.-.+..+.|.+....+.+.+...| +.||||||++.+.++.++.|+++|++. -.+++||+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p------~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHP------HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCC------CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 0000001122334555556666666433 579999999999999999999999875 24677888
Q ss_pred EeCCCC-------------------------Ccchhhhccee-EEEecCCCHHHHHHHHHHHHHh-------c--CCCCC
Q 000818 612 ITTDID-------------------------NVPRSIQSRCQ-KYLFNKIKDGDIVARLRKISAE-------E--NLNVE 656 (1268)
Q Consensus 612 aTn~~e-------------------------KL~pAL~SRcq-~I~F~pLs~eEI~~iL~kiakk-------E--gi~Id 656 (1268)
++|... .+.|.++.|+. +|.|.+++.+++..++...+.+ . .+.++
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~ 679 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELT 679 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeC
Confidence 876531 25678889995 7999999999999998777653 1 36789
Q ss_pred HHHHHHHHHHc---CCCHHHHHHHHHH
Q 000818 657 PDALDLIALNA---DGSLRDAETMLDQ 680 (1268)
Q Consensus 657 ~dALelLA~~S---~GDLRdAinlLEq 680 (1268)
++++++|+... .-..|.+...|++
T Consensus 680 ~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 680 DDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 99999999864 2345555555554
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=144.71 Aligned_cols=227 Identities=21% Similarity=0.257 Sum_probs=154.7
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHH---cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTIS---RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIk---sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
.+-.-|-|.. +.+++..+.+|...+. .+..+..+++||++|||||.+++.+++++.....
T Consensus 9 vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-------------- 71 (366)
T COG1474 9 VLLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-------------- 71 (366)
T ss_pred ccCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc--------------
Confidence 3445566654 6778877777665543 3444566999999999999999999999954322
Q ss_pred cccCCCccEEEEcCCCCcChHH-HHHHHHHHHcCCC----------------CCCCCcEEEEEeCCCCCCHHHHHHHHH-
Q 000818 537 FISGKSRNFMEVDGTNKKGLDR-VRYILKHLSAGLP----------------SASPRFKVFVIDECHLLPSKTWLAFLK- 598 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~-IReLIEea~~~pp----------------~~~g~~KVIIIDEaD~LS~ea~naLLK- 598 (1268)
...+++||+.......+ +..++..+...|. ...+..-||++||++.|.....+.|..
T Consensus 72 -----~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L 146 (366)
T COG1474 72 -----NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSL 146 (366)
T ss_pred -----cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHH
Confidence 11256666654333222 2233333221110 013456689999999997664444444
Q ss_pred --HHcCCCCcEEEEEEeCCCC---CcchhhhcceeE--EEecCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc--
Q 000818 599 --FLEEPPQRVVFIFITTDID---NVPRSIQSRCQK--YLFNKIKDGDIVARLRKISAEE--NLNVEPDALDLIALNA-- 667 (1268)
Q Consensus 599 --~LEepp~~vVfILaTn~~e---KL~pAL~SRcq~--I~F~pLs~eEI~~iL~kiakkE--gi~Id~dALelLA~~S-- 667 (1268)
..+.....+.+|+++|..+ .+.+.+.++... |.|+|++.+|+..+|...++.. .-.++++++++++..+
T Consensus 147 ~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~ 226 (366)
T COG1474 147 LRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA 226 (366)
T ss_pred HhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Confidence 4445545677888888774 578888888754 7899999999999999988753 4458899998888644
Q ss_pred -CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHhcccchHHHHHH
Q 000818 668 -DGSLRDAETMLDQLSLL-----GKRITSSLVNELVGVVSEEKLLEL 708 (1268)
Q Consensus 668 -~GDLRdAinlLEqLsll-----gk~IT~edV~eLVG~v~eedifdL 708 (1268)
+||.|.|+.+|..++.. ...|+.++|..+...+....+.+.
T Consensus 227 ~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~ 273 (366)
T COG1474 227 ESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEV 273 (366)
T ss_pred cCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHH
Confidence 78999999999998755 358999999988554444443333
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=167.38 Aligned_cols=204 Identities=18% Similarity=0.215 Sum_probs=155.4
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
.+|+++.||..++++||+++.++.+...+.+.+. +.+||+||||||||++++.||..+.... .|..
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~~~~----~p~~--------- 226 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTK-NNPVLIGEPGVGKTAIVEGLAQRIVNGD----VPES--------- 226 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCC-CceEEEcCCCCCHHHHHHHHHHHHhccC----Cchh---------
Confidence 5799999999999999999999999998877653 7789999999999999999999973211 1110
Q ss_pred cCCCccEEEEcCCC------CcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHcC
Q 000818 539 SGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------KTWLAFLKFLEE 602 (1268)
Q Consensus 539 sG~s~dfIEIDaSs------~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------ea~naLLK~LEe 602 (1268)
-.+..++.++... ..+ ...++.+++.+... ....|+||||+|.|.. ++.+.|+..++.
T Consensus 227 -l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~-----~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~ 300 (852)
T TIGR03346 227 -LKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS-----EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR 300 (852)
T ss_pred -hcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc-----CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc
Confidence 0134566655322 111 23567777776532 2456999999999852 356777777766
Q ss_pred CCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC---
Q 000818 603 PPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----ENLNVEPDALDLIALNADGS--- 670 (1268)
Q Consensus 603 pp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----Egi~Id~dALelLA~~S~GD--- 670 (1268)
. .+.+|++||..+ .+++++.+||+.|.+..|+.++...+|+.+... .++.+.++++..++..+.+-
T Consensus 301 g--~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 301 G--ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred C--ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 5 789999998774 468999999999999999999999999877655 36788999999999888543
Q ss_pred ---HHHHHHHHHHHHHh
Q 000818 671 ---LRDAETMLDQLSLL 684 (1268)
Q Consensus 671 ---LRdAinlLEqLsll 684 (1268)
+..|+.+|+.++..
T Consensus 379 r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 379 RFLPDKAIDLIDEAAAR 395 (852)
T ss_pred cCCchHHHHHHHHHHHH
Confidence 66799999987653
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7e-12 Score=152.83 Aligned_cols=209 Identities=15% Similarity=0.197 Sum_probs=141.1
Q ss_pred CCCcccc-CcH-H-HHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 468 IFFDELI-GQN-I-VVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 468 ~tFdDLV-GQe-~-vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
.+|+++| |.. . +...++..+.. ++..+.++|||++|+|||+|+.++++++..... +.
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~-------------------g~ 345 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP-------------------GT 345 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-------------------CC
Confidence 3799987 432 2 33344444443 233355899999999999999999998732111 23
Q ss_pred cEEEEcCCCCc--ChHHHHH-HHHHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcCCCC-cEEEEEEeCCCC
Q 000818 544 NFMEVDGTNKK--GLDRVRY-ILKHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEEPPQ-RVVFIFITTDID 617 (1268)
Q Consensus 544 dfIEIDaSs~~--gId~IRe-LIEea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEepp~-~vVfILaTn~~e 617 (1268)
.++++...+.. -+..++. .++.+... .....||||||++.+... .+..|+.+++.... +..+|++++...
T Consensus 346 ~V~Yitaeef~~el~~al~~~~~~~f~~~----y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 346 RVRYVSSEEFTNEFINSIRDGKGDSFRRR----YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred eEEEeeHHHHHHHHHHHHHhccHHHHHHH----hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 55566543210 0011100 11111110 123459999999998532 23445554432211 234666777653
Q ss_pred ----Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC
Q 000818 618 ----NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL----GK 686 (1268)
Q Consensus 618 ----KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll----gk 686 (1268)
.+.+.|+||+ .++.+.+++.+....+|++.+...++.++++++++|+....+|+|.++..|.+|..+ ++
T Consensus 422 ~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~ 501 (617)
T PRK14086 422 KQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQ 501 (617)
T ss_pred HhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCC
Confidence 4678899998 458999999999999999999999999999999999999999999999999998543 57
Q ss_pred ccCHHHHHHHhcc
Q 000818 687 RITSSLVNELVGV 699 (1268)
Q Consensus 687 ~IT~edV~eLVG~ 699 (1268)
.||.+.+++++..
T Consensus 502 ~itl~la~~vL~~ 514 (617)
T PRK14086 502 PVDLGLTEIVLRD 514 (617)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999888753
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=166.71 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=154.1
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
++|+++.||..+++++|+++.++.+...+.+.+ .+.+||+||||||||++|+.||..+.... .|. . .
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~-~~n~lL~G~pGvGKT~l~~~la~~i~~~~----vp~-----~---l 232 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT-KNNPVLIGEPGVGKTAIVEGLAQRIINGE----VPE-----G---L 232 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCC-cCceEEECCCCCCHHHHHHHHHHHhhcCC----Cch-----h---h
Confidence 679999999999999999999999998887765 47789999999999999999999983211 010 0 0
Q ss_pred cCCCccEEEEcCCC------CcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHcC
Q 000818 539 SGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------KTWLAFLKFLEE 602 (1268)
Q Consensus 539 sG~s~dfIEIDaSs------~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------ea~naLLK~LEe 602 (1268)
.+..++.++... ..| ...++.+++++... ....|+||||+|.|.. ++.+.|+..|+.
T Consensus 233 --~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~-----~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~ 305 (857)
T PRK10865 233 --KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ-----EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR 305 (857)
T ss_pred --CCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc-----CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc
Confidence 134555554332 111 23577788776432 2456999999999963 357888888887
Q ss_pred CCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHcCC----
Q 000818 603 PPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE----NLNVEPDALDLIALNADG---- 669 (1268)
Q Consensus 603 pp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkE----gi~Id~dALelLA~~S~G---- 669 (1268)
+ .+.+|++|+..+ .+++++.+||+.|.+..|+.++...+|+.+.... ++.++++++..++..+.+
T Consensus 306 g--~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~ 383 (857)
T PRK10865 306 G--ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIAD 383 (857)
T ss_pred C--CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccC
Confidence 6 889999999876 4789999999999999999999999998776543 678899998887776643
Q ss_pred --CHHHHHHHHHHHHHh
Q 000818 670 --SLRDAETMLDQLSLL 684 (1268)
Q Consensus 670 --DLRdAinlLEqLsll 684 (1268)
-+..|+.+++.++..
T Consensus 384 ~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 384 RQLPDKAIDLIDEAASS 400 (857)
T ss_pred CCCChHHHHHHHHHhcc
Confidence 345678888877654
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=165.98 Aligned_cols=200 Identities=16% Similarity=0.221 Sum_probs=138.8
Q ss_pred ccccCcHHHHHHHHHHHHc--------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 471 DELIGQNIVVQSLVNTISR--------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIks--------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
..|+||++++..+.++|.. +++...+||+||+|+|||.+|++||+.|.... .+..+-.|..+.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~-----~~~~~~dmse~~~~~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE-----QNLITINMSEFQEAHT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC-----cceEEEeHHHhhhhhh
Confidence 4689999999999998864 23334699999999999999999999984211 0111111222111100
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEEEEE
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVVFIF 611 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vVfIL 611 (1268)
..-+.-.+..+.|.+.-..+.+.+...| +.||+|||++.+.+..++.|+++|++.. .+++||+
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~~~p------~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVRRKP------YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hccccCCCCCcccccccchHHHHHHhCC------CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 0000001111222222233455555433 5599999999999999999999998764 6788999
Q ss_pred EeCCCC-----------------------------CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh--------cC--
Q 000818 612 ITTDID-----------------------------NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE--------EN-- 652 (1268)
Q Consensus 612 aTn~~e-----------------------------KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk--------Eg-- 652 (1268)
++|... .+.|++++|+.+|.|.+++.+++.+++...+.+ .+
T Consensus 715 TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~ 794 (852)
T TIGR03345 715 TSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAE 794 (852)
T ss_pred eCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 887421 157889999999999999999999988665433 14
Q ss_pred CCCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 000818 653 LNVEPDALDLIALNADG---SLRDAETMLDQL 681 (1268)
Q Consensus 653 i~Id~dALelLA~~S~G---DLRdAinlLEqL 681 (1268)
+.++++++++|+....+ +.|.+.+.|++.
T Consensus 795 l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 795 LVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred EEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 46899999999999876 789988888874
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=147.55 Aligned_cols=233 Identities=20% Similarity=0.211 Sum_probs=144.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCc-----cccccccc-
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC-----RECNDFIS- 539 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C-----~sC~~i~s- 539 (1268)
.|..|++|+||+++++.|.-++.... .+++||+|+||||||++|++|++.|.|.......||..+ +.+.....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~-~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPG-IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccC-CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 48889999999999998886543222 267999999999999999999999987665555555433 22211100
Q ss_pred ---CCCccEEEEcC--CC--CcChHHHHHHHH--HHHcCCCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC------
Q 000818 540 ---GKSRNFMEVDG--TN--KKGLDRVRYILK--HLSAGLPS-ASPRFKVFVIDECHLLPSKTWLAFLKFLEEP------ 603 (1268)
Q Consensus 540 ---G~s~dfIEIDa--Ss--~~gId~IReLIE--ea~~~pp~-~~g~~KVIIIDEaD~LS~ea~naLLK~LEep------ 603 (1268)
.....|+.+-. +. ..|.-++...+. .+.+.+.+ +.+...++||||++.+....++.|+..|++.
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r 161 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVER 161 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEE
Confidence 00123333311 11 112111222111 11111222 2355679999999999999999999999864
Q ss_pred -------CCcEEEEEEeCCCC-CcchhhhcceeE-EEecCCCH-HHHHHHHHHHHH------------------------
Q 000818 604 -------PQRVVFIFITTDID-NVPRSIQSRCQK-YLFNKIKD-GDIVARLRKISA------------------------ 649 (1268)
Q Consensus 604 -------p~~vVfILaTn~~e-KL~pAL~SRcq~-I~F~pLs~-eEI~~iL~kiak------------------------ 649 (1268)
+..+++|.+.|..+ .+++++..|+.. +.+.++.. ++-..+|.....
T Consensus 162 ~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (334)
T PRK13407 162 EGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRIL 241 (334)
T ss_pred CCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHH
Confidence 23444444444323 589999999864 66666655 454444433211
Q ss_pred -----hcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHH---h-C-CccCHHHHHHHhcc
Q 000818 650 -----EENLNVEPDALDLIALNA----DGSLRDAETMLDQLSL---L-G-KRITSSLVNELVGV 699 (1268)
Q Consensus 650 -----kEgi~Id~dALelLA~~S----~GDLRdAinlLEqLsl---l-g-k~IT~edV~eLVG~ 699 (1268)
-..+.++++.+++|++.+ ..++|..+.++..+.. . | ..|+.++|.++...
T Consensus 242 ~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 242 GARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred HHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 024678898888888765 2467877776665532 2 3 47999999877643
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=154.07 Aligned_cols=169 Identities=26% Similarity=0.280 Sum_probs=131.2
Q ss_pred CCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
-.+|+||-+++++..+|..+|.. -..+..+|||||||||||.+|+++|++.
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa----------------- 569 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA----------------- 569 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----------------
Confidence 34799999999999999988863 2335689999999999999999999986
Q ss_pred cccccCCCccEEEEcCCCC----cC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHH
Q 000818 535 NDFISGKSRNFMEVDGTNK----KG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTWLAFL 597 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~----~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~naLL 597 (1268)
+.+|+.+.+.+. .| ...+|.++..++...|+ |||+||+|.|.+ ...|.||
T Consensus 570 -------g~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPC------VIFFDEiDaL~p~R~~~~s~~s~RvvNqLL 636 (802)
T KOG0733|consen 570 -------GANFISVKGPELLNKYVGESERAVRQVFQRARASAPC------VIFFDEIDALVPRRSDEGSSVSSRVVNQLL 636 (802)
T ss_pred -------cCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCe------EEEecchhhcCcccCCCCchhHHHHHHHHH
Confidence 679999987652 11 23588999998876655 999999999953 3478888
Q ss_pred HHHcCC--CCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHH
Q 000818 598 KFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPD-ALDLIAL 665 (1268)
Q Consensus 598 K~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~d-ALelLA~ 665 (1268)
.-|+.. ...|.+|.+||+|+.++|+|++ |+.. +....|+.++...+|+.+.+..+..++.+ .++.||.
T Consensus 637 tElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 637 TELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 888743 4578889999999999999998 4444 66777888999999999888544444433 2444454
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=158.96 Aligned_cols=201 Identities=19% Similarity=0.187 Sum_probs=149.4
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc-ccCCCCCCCCCccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc-e~~e~~~PCg~C~sC~~i 537 (1268)
+.|+++-+-..++.++|.+..++.+...+.+.+ .+.+||+||+|||||++|+.||..+.. ..+....
T Consensus 174 ~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~-~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~----------- 241 (758)
T PRK11034 174 TNLNQLARVGGIDPLIGREKELERAIQVLCRRR-KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA----------- 241 (758)
T ss_pred HhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccC-CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhc-----------
Confidence 568888888999999999999999999888754 477899999999999999999988632 1111111
Q ss_pred ccCCCccEEEEcCC------CCcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHH
Q 000818 538 ISGKSRNFMEVDGT------NKKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---------SKTWLAFLKFL 600 (1268)
Q Consensus 538 ~sG~s~dfIEIDaS------s~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---------~ea~naLLK~L 600 (1268)
...++.++.. ...| ...++.+++.+... ...|+||||+|.|. .++.|.|..++
T Consensus 242 ----~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L 311 (758)
T PRK11034 242 ----DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 311 (758)
T ss_pred ----CCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 1233333221 1111 23466777766532 23499999999882 23456677788
Q ss_pred cCCCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC--
Q 000818 601 EEPPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----ENLNVEPDALDLIALNADG-- 669 (1268)
Q Consensus 601 Eepp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----Egi~Id~dALelLA~~S~G-- 669 (1268)
+.. .+.+|++||..+ .++++|.+||+.|.+.+|+.++...+|+.+... .++.|+++|+..++..+..
T Consensus 312 ~~g--~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 312 SSG--KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred hCC--CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 765 788999998764 468999999999999999999999999876543 4788999999988887643
Q ss_pred ----CHHHHHHHHHHHHH
Q 000818 670 ----SLRDAETMLDQLSL 683 (1268)
Q Consensus 670 ----DLRdAinlLEqLsl 683 (1268)
-+..|+.+|+.++.
T Consensus 390 ~~r~lPdKaidlldea~a 407 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred cCccChHHHHHHHHHHHH
Confidence 34589999998875
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=163.08 Aligned_cols=195 Identities=18% Similarity=0.286 Sum_probs=129.8
Q ss_pred ccccCcHHHHHHHHHHHHc--------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 471 DELIGQNIVVQSLVNTISR--------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIks--------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
..|+||+++++.|.++|.. +++..++||+||+|||||.+|+.||+.+.+.. ..-.|..+.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~--------i~id~se~~~~~~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL--------LRFDMSEYMERHT 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCc--------EEeechhhccccc
Confidence 3679999999999999873 34445799999999999999999999984211 0011111111000
Q ss_pred c-cEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEEEE
Q 000818 543 R-NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVVFI 610 (1268)
Q Consensus 543 ~-dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vVfI 610 (1268)
. .++- .+....|.+....+.+.+... .+.||||||++.++++.++.|+++|++.. .+++||
T Consensus 530 ~~~LiG-~~~gyvg~~~~g~L~~~v~~~------p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 530 VSRLIG-APPGYVGFDQGGLLTDAVIKH------PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred HHHHcC-CCCCcccccccchHHHHHHhC------CCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 0 0000 001111222222344444432 35699999999999999999999998652 467899
Q ss_pred EEeCCC-------------------------CCcchhhhccee-EEEecCCCHHHHHHHHHHHHHh-------c--CCCC
Q 000818 611 FITTDI-------------------------DNVPRSIQSRCQ-KYLFNKIKDGDIVARLRKISAE-------E--NLNV 655 (1268)
Q Consensus 611 LaTn~~-------------------------eKL~pAL~SRcq-~I~F~pLs~eEI~~iL~kiakk-------E--gi~I 655 (1268)
++||.. ..+.|.++.|+. ++.|.+++.+++..++...+.+ . .+.+
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~ 682 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEV 682 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceE
Confidence 998832 125688999996 6999999999998888665432 2 3457
Q ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHH
Q 000818 656 EPDALDLIALNA---DGSLRDAETMLDQ 680 (1268)
Q Consensus 656 d~dALelLA~~S---~GDLRdAinlLEq 680 (1268)
+++++++|+... .-..|.+...+++
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 899999999765 2235555555554
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=139.87 Aligned_cols=191 Identities=15% Similarity=0.224 Sum_probs=124.8
Q ss_pred CCCcccc-Cc--HHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 468 IFFDELI-GQ--NIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 468 ~tFdDLV-GQ--e~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
.+|+.+| |. ..+...+...... +...+.++||||+|+|||++.++++.++....+ ..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-------------------~~ 65 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP-------------------GK 65 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT-------------------TS
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc-------------------cc
Confidence 3899986 53 3444444444343 222346889999999999999999998853222 34
Q ss_pred cEEEEcCCCCc--Ch-----HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHcCCC-CcEEEEEEe
Q 000818 544 NFMEVDGTNKK--GL-----DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT--WLAFLKFLEEPP-QRVVFIFIT 613 (1268)
Q Consensus 544 dfIEIDaSs~~--gI-----d~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea--~naLLK~LEepp-~~vVfILaT 613 (1268)
.++.+++.... -+ ..+..+.+.+. ...+++||++|.+.... +..|..+++... ....+|+++
T Consensus 66 ~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 66 RVVYLSAEEFIREFADALRDGEIEEFKDRLR--------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp -EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cceeecHHHHHHHHHHHHHcccchhhhhhhh--------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 56677653310 00 01122333333 34599999999997543 566666654311 123566666
Q ss_pred CCC-C---Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 000818 614 TDI-D---NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG 685 (1268)
Q Consensus 614 n~~-e---KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsllg 685 (1268)
+.+ . .+.+.|.||+ ..+.+.+|+.++...+|++.+...++.++++++++|+....+|+|.+...|+++.++.
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Confidence 544 3 3678899997 4699999999999999999999999999999999999999999999999999997653
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=163.61 Aligned_cols=202 Identities=19% Similarity=0.204 Sum_probs=156.3
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcc-cCCCCCCCCCccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV-ATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce-~~e~~~PCg~C~sC~~i 537 (1268)
+.|+++-+...+++++|++..++.+...+...+ .+++||+||||||||++|+.||..+... .+..
T Consensus 167 ~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~-~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~------------- 232 (821)
T CHL00095 167 TNLTKEAIDGNLDPVIGREKEIERVIQILGRRT-KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI------------- 232 (821)
T ss_pred HHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccc-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-------------
Confidence 568888999999999999999999999988765 4678999999999999999999998421 1110
Q ss_pred ccCCCccEEEEcCCC------CcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHc
Q 000818 538 ISGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------KTWLAFLKFLE 601 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs------~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------ea~naLLK~LE 601 (1268)
-.+..|++++... ..| .+.++.+++++... ...|+||||+|.|.. .+.+.|...|.
T Consensus 233 --l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~------~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~ 304 (821)
T CHL00095 233 --LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN------NNIILVIDEVHTLIGAGAAEGAIDAANILKPALA 304 (821)
T ss_pred --hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc------CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh
Confidence 1145677777532 222 24677888877532 345999999998753 34677878888
Q ss_pred CCCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC--
Q 000818 602 EPPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----ENLNVEPDALDLIALNADGS-- 670 (1268)
Q Consensus 602 epp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----Egi~Id~dALelLA~~S~GD-- 670 (1268)
.+ .+.+|++||..+ ...+++.+|++.+.+..++.+++..+|+.+... .++.++++++..++..+.+-
T Consensus 305 rg--~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 305 RG--ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CC--CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 75 788999998764 367899999999999999999988888765432 36779999999999988763
Q ss_pred ----HHHHHHHHHHHHHh
Q 000818 671 ----LRDAETMLDQLSLL 684 (1268)
Q Consensus 671 ----LRdAinlLEqLsll 684 (1268)
++.|+.+|+.++..
T Consensus 383 ~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred cccCchHHHHHHHHHHHH
Confidence 66799999988653
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=156.94 Aligned_cols=225 Identities=20% Similarity=0.246 Sum_probs=148.2
Q ss_pred CccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHh-----------hcccCCCCCCCCCcccccccc
Q 000818 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL-----------NCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaL-----------nce~~e~~~PCg~C~sC~~i~ 538 (1268)
|.+||||++++..|..++...++ .++||+|++|||||++|++|++.+ +| ....||+.|..|..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~-g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c---~p~~~~~~~~~~~~~~ 78 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI-GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSC---DPDDPEEWCEECRRKY 78 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC-CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCC---CCCCccccChhhhhcc
Confidence 78999999999999888887776 569999999999999999999998 44 3356999999999886
Q ss_pred cCCC---ccEEEEcCCCC----cChHHHHHHHHH--HHcCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----
Q 000818 539 SGKS---RNFMEVDGTNK----KGLDRVRYILKH--LSAGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP----- 603 (1268)
Q Consensus 539 sG~s---~dfIEIDaSs~----~gId~IReLIEe--a~~~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep----- 603 (1268)
.+.+ ..|+.+..... .|..++...++. ....+ ....+...|+||||++.|....++.|+.+|++.
T Consensus 79 ~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 79 RPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred cccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 6543 56777643321 111112222211 00111 112456679999999999999999999999865
Q ss_pred --------CCcEEEEEEeCCC-CCcchhhhcceeE-EEecCCC-HHHHHHHHHHHHH-----------------------
Q 000818 604 --------PQRVVFIFITTDI-DNVPRSIQSRCQK-YLFNKIK-DGDIVARLRKISA----------------------- 649 (1268)
Q Consensus 604 --------p~~vVfILaTn~~-eKL~pAL~SRcq~-I~F~pLs-~eEI~~iL~kiak----------------------- 649 (1268)
+.++.+|.++|.. ..+.++|..|+.. +.+..+. .++...++.....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 2345666655532 2588999999964 5555544 2333333322110
Q ss_pred ------hcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HHh--CCccCHHHHHHHhc
Q 000818 650 ------EENLNVEPDALDLIALNA---DG-SLRDAETMLDQL---SLL--GKRITSSLVNELVG 698 (1268)
Q Consensus 650 ------kEgi~Id~dALelLA~~S---~G-DLRdAinlLEqL---sll--gk~IT~edV~eLVG 698 (1268)
...+.++++++++|+..+ +- .+|..+.++.-+ +.+ ...|+.+||.+++.
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 124677888888877766 22 366665555543 223 24788888776663
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=146.41 Aligned_cols=230 Identities=18% Similarity=0.215 Sum_probs=147.8
Q ss_pred CccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHh-------hccc-CCCCCCCCCcccccccccC-
Q 000818 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL-------NCVA-TDQTKPCGYCRECNDFISG- 540 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaL-------nce~-~e~~~PCg~C~sC~~i~sG- 540 (1268)
|..||||++++..|.-.+-...+ .+++|.|++|+|||+++++|+..+ .|.. .....||..|..|+.....
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~-g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKI-GGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 88999999999998766666554 568899999999999999999888 4432 2345799999999864221
Q ss_pred -------CCccEEEEcC--CC--CcChHHHHHHHHH--HHcCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC--
Q 000818 541 -------KSRNFMEVDG--TN--KKGLDRVRYILKH--LSAGLP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-- 604 (1268)
Q Consensus 541 -------~s~dfIEIDa--Ss--~~gId~IReLIEe--a~~~pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-- 604 (1268)
....|..+-. .. ..|.-++...+.. ....+. ...++..++||||++.|+...++.|+.+|++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 1223333211 11 1122222222111 111111 223566899999999999999999999997642
Q ss_pred -----------CcEEEEEEeCCCC-CcchhhhcceeE-EEecCCCH-HHHHHHHHHHHH---------------------
Q 000818 605 -----------QRVVFIFITTDID-NVPRSIQSRCQK-YLFNKIKD-GDIVARLRKISA--------------------- 649 (1268)
Q Consensus 605 -----------~~vVfILaTn~~e-KL~pAL~SRcq~-I~F~pLs~-eEI~~iL~kiak--------------------- 649 (1268)
.++++|.+.|-.+ .+++++..|+.. +.+..+.. ++...+|.....
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 2333333333223 689999999975 66666654 554445444110
Q ss_pred --------hcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HHh-C-CccCHHHHHHHhccc
Q 000818 650 --------EENLNVEPDALDLIALNA---DG-SLRDAETMLDQL---SLL-G-KRITSSLVNELVGVV 700 (1268)
Q Consensus 650 --------kEgi~Id~dALelLA~~S---~G-DLRdAinlLEqL---sll-g-k~IT~edV~eLVG~v 700 (1268)
-..+.++++++++|+..+ +. +.|..+.++..+ +++ + ..|+.+||..++..+
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 125678898888887755 33 578877777655 223 3 479999998877543
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-12 Score=143.47 Aligned_cols=192 Identities=23% Similarity=0.268 Sum_probs=130.3
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHH----------cC-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTIS----------RG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIk----------sg-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg 529 (1268)
..++-.-..|+||+|..++++.|++++- .. ++=..+|++||||||||.+|+++|.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------------ 269 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------------ 269 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------------
Confidence 3444445689999999999999999875 22 333689999999999999999999885
Q ss_pred CcccccccccCCCccEEEEcCCC----CcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH------------H
Q 000818 530 YCRECNDFISGKSRNFMEVDGTN----KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS------------K 591 (1268)
Q Consensus 530 ~C~sC~~i~sG~s~dfIEIDaSs----~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~------------e 591 (1268)
+..|+.|..+. .+| ..-+|-|++-+++..|. +|||||||.|.. .
T Consensus 270 ------------~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPS------tIFiDEIDslcs~RG~s~EHEaSRR 331 (491)
T KOG0738|consen 270 ------------GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPS------TIFIDEIDSLCSQRGGSSEHEASRR 331 (491)
T ss_pred ------------cCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCc------eeehhhHHHHHhcCCCccchhHHHH
Confidence 23556665443 222 23478888888877765 899999999842 1
Q ss_pred HHHHHHHHHcCC-----CCcEEEEEE-eCCCCCcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 000818 592 TWLAFLKFLEEP-----PQRVVFIFI-TTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664 (1268)
Q Consensus 592 a~naLLK~LEep-----p~~vVfILa-Tn~~eKL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA 664 (1268)
.-+.||-.|+.. ...+||||+ ||-|..|+.++++|+.. |.++ ++..+-+.-|-+++-.+-...++--++.|+
T Consensus 332 vKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIP-LP~~~~R~~Li~~~l~~~~~~~~~~~~~la 410 (491)
T KOG0738|consen 332 VKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIP-LPDAEARSALIKILLRSVELDDPVNLEDLA 410 (491)
T ss_pred HHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeee-CCCHHHHHHHHHHhhccccCCCCccHHHHH
Confidence 245677766532 135677775 55577999999999977 5554 444455555555554544445555678888
Q ss_pred HHcCCCH-HHHHHHHHHHHH
Q 000818 665 LNADGSL-RDAETMLDQLSL 683 (1268)
Q Consensus 665 ~~S~GDL-RdAinlLEqLsl 683 (1268)
+.+.|-- .++.+.+..++.
T Consensus 411 e~~eGySGaDI~nvCreAsm 430 (491)
T KOG0738|consen 411 ERSEGYSGADITNVCREASM 430 (491)
T ss_pred HHhcCCChHHHHHHHHHHHH
Confidence 8876632 233344444443
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=148.76 Aligned_cols=153 Identities=10% Similarity=0.151 Sum_probs=115.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCc------ChHHHHHHH
Q 000818 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK------GLDRVRYIL 563 (1268)
Q Consensus 490 gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~------gId~IReLI 563 (1268)
-+++..++||||||||||.+|+++|+++ +.+++.+++.+.. +...||+++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el------------------------g~~~i~vsa~eL~sk~vGEsEk~IR~~F 200 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM------------------------GIEPIVMSAGELESENAGEPGKLIRQRY 200 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc------------------------CCCeEEEEHHHhhcCcCCcHHHHHHHHH
Confidence 3667789999999999999999999998 4467777765421 235788888
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCHH-----------H-HHHHHHHHcC--------------CCCcEEEEEEeCCCC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPSK-----------T-WLAFLKFLEE--------------PPQRVVFIFITTDID 617 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~e-----------a-~naLLK~LEe--------------pp~~vVfILaTn~~e 617 (1268)
..+..... ..+...||||||+|.+... . ...|+..++. ...++.+|.+||+++
T Consensus 201 ~~A~~~a~-~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd 279 (413)
T PLN00020 201 REAADIIK-KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS 279 (413)
T ss_pred HHHHHHhh-ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc
Confidence 88764210 1234459999999987531 1 2456666553 245688899999999
Q ss_pred Ccchhhhc--ceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Q 000818 618 NVPRSIQS--RCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670 (1268)
Q Consensus 618 KL~pAL~S--Rcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GD 670 (1268)
.|+++|++ |+..+ |..|+.++...+|+.++++.+ ++...+..|+....|-
T Consensus 280 ~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 280 TLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred cCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 99999999 88765 457899999999999888765 5678888888888773
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-12 Score=149.76 Aligned_cols=203 Identities=20% Similarity=0.233 Sum_probs=149.5
Q ss_pred cCCCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
....+|+|+.|.+.+...++..+. .-+.+..+|||||||||||.+|+++|..+
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~--------------- 300 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES--------------- 300 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---------------
Confidence 334679999998888888877764 12445689999999999999999999976
Q ss_pred cccccccCCCccEEEEcCCCCcC------hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-----------HHHHHH
Q 000818 533 ECNDFISGKSRNFMEVDGTNKKG------LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-----------SKTWLA 595 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~~g------Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-----------~ea~na 595 (1268)
+.+|+.+++++..+ ...|+.++..+....|+ ||||||+|.+. ....+.
T Consensus 301 ---------~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~------iiFiDEiDs~~~~r~~~~~~~~~r~~~~ 365 (494)
T COG0464 301 ---------RSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPS------IIFIDEIDSLASGRGPSEDGSGRRVVGQ 365 (494)
T ss_pred ---------CCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCc------EEEEEchhhhhccCCCCCchHHHHHHHH
Confidence 55788887665322 35688888888855544 99999999883 146788
Q ss_pred HHHHHc--CCCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCC
Q 000818 596 FLKFLE--EPPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLN-VEPDALDLIALNADG 669 (1268)
Q Consensus 596 LLK~LE--epp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~-Id~dALelLA~~S~G 669 (1268)
|+..++ +...+|++|.+||.++.+++++++ |+.. +.|.+++..+...+++..+...... .++-.++.|++.+.|
T Consensus 366 lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 366 LLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 888885 455678889999999999999999 8865 8899999999999998888765553 344556777776655
Q ss_pred -CHHHHHHHHHHHHHh------CCccCHHHHHHHh
Q 000818 670 -SLRDAETMLDQLSLL------GKRITSSLVNELV 697 (1268)
Q Consensus 670 -DLRdAinlLEqLsll------gk~IT~edV~eLV 697 (1268)
...++..++..+... ...||.+++.+.+
T Consensus 446 ~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~ 480 (494)
T COG0464 446 YSGADIAALVREAALEALREARRREVTLDDFLDAL 480 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHH
Confidence 444555555555432 2245555555544
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=165.09 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=129.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCC----CccEE--------------------
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGK----SRNFM-------------------- 546 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~----s~dfI-------------------- 546 (1268)
+++.++||+||||||||.+|+++|.+...... ...+..+.... -.+++
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFI--------sISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFI--------TVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceE--------EEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 56678999999999999999999998743110 01111111100 00000
Q ss_pred ---EE-cCC---CCcChH--HHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-----HHHHHHHHHcCC-----CCcE
Q 000818 547 ---EV-DGT---NKKGLD--RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-----TWLAFLKFLEEP-----PQRV 607 (1268)
Q Consensus 547 ---EI-DaS---s~~gId--~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e-----a~naLLK~LEep-----p~~v 607 (1268)
++ +.. ...++. .++.+++.+....|+ ||+|||+|.|... ..+.|+..|+.. ..++
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPC------IIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPC------IIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCe------EEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCE
Confidence 00 000 001122 378899999877665 9999999999743 257788888632 3578
Q ss_pred EEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHcCC-CHHHHHHHHHHH
Q 000818 608 VFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPD--ALDLIALNADG-SLRDAETMLDQL 681 (1268)
Q Consensus 608 VfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~d--ALelLA~~S~G-DLRdAinlLEqL 681 (1268)
++|+|||.++.|+|||++ |+.+ |.++.|+..+..+++.......++.++.+ .++.||+.+.| +.+++.+++..+
T Consensus 1774 IVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1774 LVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999998 7755 88888887666666654444456666543 36788888866 567777777776
Q ss_pred HHh-----CCccCHHHHHHHhcc
Q 000818 682 SLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 682 sll-----gk~IT~edV~eLVG~ 699 (1268)
++. ...|+.+++..++..
T Consensus 1854 aliAirq~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1854 LSISITQKKSIIDTNTIRSALHR 1876 (2281)
T ss_pred HHHHHHcCCCccCHHHHHHHHHH
Confidence 544 247888888877643
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-12 Score=151.21 Aligned_cols=176 Identities=26% Similarity=0.314 Sum_probs=128.3
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHc----------C-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCc
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISR----------G-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIks----------g-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C 531 (1268)
.|..-.+|+||-|-++++..|+..|.- | +.-..+|||||||||||.+|+++|.++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-------------- 729 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-------------- 729 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------------
Confidence 445556899999999999999988862 1 223689999999999999999999987
Q ss_pred ccccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-------------H
Q 000818 532 RECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-------------T 592 (1268)
Q Consensus 532 ~sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e-------------a 592 (1268)
+.+|+.+.+.+. ...+++|++++.++.+.|+ |||+||+|.|.+. .
T Consensus 730 ----------sL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PC------VIFFDELDSlAP~RG~sGDSGGVMDRV 793 (953)
T KOG0736|consen 730 ----------SLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPC------VIFFDELDSLAPNRGRSGDSGGVMDRV 793 (953)
T ss_pred ----------eeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCe------EEEeccccccCccCCCCCCccccHHHH
Confidence 567777766541 1246899999999987665 9999999999643 3
Q ss_pred HHHHHHHHcC----CCCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHH-HHHHHHHHHhcCCCCCHHHHHHHH
Q 000818 593 WLAFLKFLEE----PPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDI-VARLRKISAEENLNVEPDALDLIA 664 (1268)
Q Consensus 593 ~naLLK~LEe----pp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI-~~iL~kiakkEgi~Id~dALelLA 664 (1268)
...||.-|+. ....+.+|.|||+|+-|+|+|++ |+.. +++.+...++- .++|+.+-++..++-+ -.+..||
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLded-VdL~eiA 872 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDED-VDLVEIA 872 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCC-cCHHHHH
Confidence 5677877764 34578888999999999999998 6666 55555554443 3455555555443322 1355667
Q ss_pred HHcCC
Q 000818 665 LNADG 669 (1268)
Q Consensus 665 ~~S~G 669 (1268)
+.+.-
T Consensus 873 k~cp~ 877 (953)
T KOG0736|consen 873 KKCPP 877 (953)
T ss_pred hhCCc
Confidence 76643
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-12 Score=140.41 Aligned_cols=190 Identities=15% Similarity=0.252 Sum_probs=143.3
Q ss_pred HHcCCCCcEEEEEEeCCCC--CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHcCCC
Q 000818 599 FLEEPPQRVVFIFITTDID--NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE------NLNVEPDALDLIALNADGS 670 (1268)
Q Consensus 599 ~LEepp~~vVfILaTn~~e--KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkE------gi~Id~dALelLA~~S~GD 670 (1268)
.+|++ .++||.+|++.. .+.++|+|||++|.|.+++.+++..+|++.+..+ .+.++++++++|+..++||
T Consensus 3 ~vE~G--~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GD 80 (300)
T PRK14700 3 YVESG--KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD 80 (300)
T ss_pred CccCC--cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCH
Confidence 45665 899999999876 6899999999999999999999999999988752 3679999999999999999
Q ss_pred HHHHHHHHHHHHHh--C-C--ccCHHHHHHHhc----------ccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH
Q 000818 671 LRDAETMLDQLSLL--G-K--RITSSLVNELVG----------VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPM 735 (1268)
Q Consensus 671 LRdAinlLEqLsll--g-k--~IT~edV~eLVG----------~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl 735 (1268)
.|.|+|.||.+... . . .||.+.|.++++ ....+.+..|.+.+...|+..|+.++..|++.|+||.
T Consensus 81 aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~ 160 (300)
T PRK14700 81 CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL 160 (300)
T ss_pred HHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHH
Confidence 99999999996642 1 1 399999998874 2344567788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHccCCCC
Q 000818 736 VLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLS-SERCTWFTATLLQLGSMHS 804 (1268)
Q Consensus 736 ~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEaDkqLK~S-~d~rl~LE~aLL~L~~lp~ 804 (1268)
.|.+.|...-- +.+-..+...|..++..+ +.--+-| ...++.|-.+++-||.-|-
T Consensus 161 ~IaRRLii~As-----------EDIGlAdP~al~~a~aa~---~A~~~iG~PEa~i~La~aviyLA~aPK 216 (300)
T PRK14700 161 VIARRMLCIAS-----------EDIGNADPQALRVAMDAW---NAYEKLGMPEGRLVLAQAAIYLAVAPK 216 (300)
T ss_pred HHHHHHHHHHH-----------hhccCCCHHHHHHHHHHH---HHHHHhCChHHHHHHHHHHHHHHcCCC
Confidence 88765544221 222233333343322222 2222233 3667777777777777443
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=156.17 Aligned_cols=200 Identities=17% Similarity=0.285 Sum_probs=137.1
Q ss_pred cccCcHHHHHHHHHHHHc-----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 472 ELIGQNIVVQSLVNTISR-----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIks-----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
+..|++.+++.+..++.. ...++.++|+||||+|||++++.+|+.++ .+++
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~------------------------~~~~ 378 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG------------------------RKYV 378 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC------------------------CCEE
Confidence 488999999999877652 12346899999999999999999999883 2333
Q ss_pred EEcCCCCcChHHH------------HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH----HHHHHHHHcCC-------
Q 000818 547 EVDGTNKKGLDRV------------RYILKHLSAGLPSASPRFKVFVIDECHLLPSKT----WLAFLKFLEEP------- 603 (1268)
Q Consensus 547 EIDaSs~~gId~I------------ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea----~naLLK~LEep------- 603 (1268)
.++.........+ ..++..+... .....||+|||+|.++... .++|+.+|+..
T Consensus 379 ~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d 454 (784)
T PRK10787 379 RMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSD 454 (784)
T ss_pred EEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEec
Confidence 3332211111111 1122222221 1234599999999998764 58999999741
Q ss_pred --------CCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----------cCCCCCHHHHHHHHH
Q 000818 604 --------PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----------ENLNVEPDALDLIAL 665 (1268)
Q Consensus 604 --------p~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----------Egi~Id~dALelLA~ 665 (1268)
-.+++||+++|.. .|+++|++||.+|.|.+++.+++..+++..+.. ..+.++++++.+|++
T Consensus 455 ~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 455 HYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred ccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 2578888777665 599999999999999999999999887766531 135689999999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHh-------C-----CccCHHHHHHHhccc
Q 000818 666 NA--DGSLRDAETMLDQLSLL-------G-----KRITSSLVNELVGVV 700 (1268)
Q Consensus 666 ~S--~GDLRdAinlLEqLsll-------g-----k~IT~edV~eLVG~v 700 (1268)
.+ .-..|.+...|++++.. + -.|+.+++.+.+|..
T Consensus 534 ~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 534 YYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred hCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 54 22466666666665321 2 157777777777654
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-12 Score=154.76 Aligned_cols=202 Identities=19% Similarity=0.250 Sum_probs=143.2
Q ss_pred cCCCCCccccCcHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIk-----------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
....+|+|+.|...++..|...+. .++++..+||+||+|||||+++++++.++.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--------------- 210 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------------- 210 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---------------
Confidence 335679999999888877766543 235567899999999999999999999873
Q ss_pred ccccccCCCccEEEEcCCC------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------------HHH
Q 000818 534 CNDFISGKSRNFMEVDGTN------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTW 593 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------------ea~ 593 (1268)
.+|+.+++++ ..+...++.+++.+....| .||||||+|.+.. ...
T Consensus 211 ---------~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P------~IifIDEiD~l~~~r~~~~~g~~~~~~~~l 275 (644)
T PRK10733 211 ---------VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP------CIIFIDEIDAVGRQRGAGLGGGHDEREQTL 275 (644)
T ss_pred ---------CCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCC------cEEEehhHhhhhhccCCCCCCCchHHHHHH
Confidence 3555555432 1234567888887765433 4999999999832 235
Q ss_pred HHHHHHHcCC--CCcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Q 000818 594 LAFLKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNAD 668 (1268)
Q Consensus 594 naLLK~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~ 668 (1268)
+.||..|+.. ...+++|++||.++.|++++++ |+.+ |.|..|+.++...+|+..+.+..+.-+ ..+..|++.+.
T Consensus 276 n~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d~~~la~~t~ 354 (644)
T PRK10733 276 NQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-IDAAIIARGTP 354 (644)
T ss_pred HHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CCHHHHHhhCC
Confidence 6777767643 3468999999999999999986 7754 889999999999999888876543222 22556788776
Q ss_pred C-CHHHHHHHHHHHHHh-----CCccCHHHHHHHh
Q 000818 669 G-SLRDAETMLDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 669 G-DLRdAinlLEqLsll-----gk~IT~edV~eLV 697 (1268)
| +.+++.+++..++.. ...|+..++.+++
T Consensus 355 G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 355 GFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 6 444444555544432 2468888877655
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=137.38 Aligned_cols=119 Identities=29% Similarity=0.360 Sum_probs=102.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC-------------CCcchhhhcceeEEEecCCCHHHHHHHHH
Q 000818 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI-------------DNVPRSIQSRCQKYLFNKIKDGDIVARLR 645 (1268)
Q Consensus 579 VIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~-------------eKL~pAL~SRcq~I~F~pLs~eEI~~iL~ 645 (1268)
|+||||+|||.-+.|..|-+.||.+-.. ++||++|.- +-+++.++.|..+|...++++++++++|+
T Consensus 299 VLFIDEVhMLDiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 299 VLFIDEVHMLDIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred ceEeeehhhhhhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence 8999999999999999999999998655 467777643 35799999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHH----hC-CccCHHHHHHHhc
Q 000818 646 KISAEENLNVEPDALDLIALNA-DGSLRDAETMLDQLSL----LG-KRITSSLVNELVG 698 (1268)
Q Consensus 646 kiakkEgi~Id~dALelLA~~S-~GDLRdAinlLEqLsl----lg-k~IT~edV~eLVG 698 (1268)
.+++.|++.++++|+.+++... .-++|.++++|.-+.. ++ +.|..++|+++..
T Consensus 378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 9999999999999999999965 6789999999985433 23 4788888887653
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=153.21 Aligned_cols=207 Identities=24% Similarity=0.285 Sum_probs=147.2
Q ss_pred CCCCccccCcHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk-----------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
..+|.|+.|.+++++.|.+.+. .++++..+||+||||||||.+|+++|.+.+-
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V---------------- 209 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---------------- 209 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC----------------
Confidence 4689999999999988887764 4688999999999999999999999987621
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHc
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTWLAFLKFLE 601 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------------ea~naLLK~LE 601 (1268)
.|+.-.+.+|+++-.. .|...+|++++++....|+ ||||||+|.+.. ...|.||-.|+
T Consensus 210 PFf~iSGS~FVemfVG--vGAsRVRdLF~qAkk~aP~------IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 210 PFFSISGSDFVEMFVG--VGASRVRDLFEQAKKNAPC------IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred CceeccchhhhhhhcC--CCcHHHHHHHHHhhccCCC------eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc
Confidence 1222333444444322 3567899999999876655 999999998842 35778888887
Q ss_pred CCC--CcEEEEEEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHH
Q 000818 602 EPP--QRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG-SLRDAE 675 (1268)
Q Consensus 602 epp--~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G-DLRdAi 675 (1268)
... ..+++|.+||.++-++++|++ |+.+ +....|+.....++|+-.++.-.+.- .--+..||+.+.| ...+..
T Consensus 282 GF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-~Vdl~~iAr~tpGfsGAdL~ 360 (596)
T COG0465 282 GFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-DVDLKKIARGTPGFSGADLA 360 (596)
T ss_pred cCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-cCCHHHHhhhCCCcccchHh
Confidence 654 578888899999999999987 5544 77788887888888875555544431 1223347777755 334455
Q ss_pred HHHHHHHHh-----CCccCHHHHHHHhc
Q 000818 676 TMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 676 nlLEqLsll-----gk~IT~edV~eLVG 698 (1268)
|++..++++ ...|+..++.+.+.
T Consensus 361 nl~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 361 NLLNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred hhHHHHHHHHHHhcCeeEeccchHHHHH
Confidence 666544443 34677777776653
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=142.02 Aligned_cols=236 Identities=17% Similarity=0.211 Sum_probs=150.6
Q ss_pred hhhcCCC-CCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC--------cc
Q 000818 462 SQKYKPI-FFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY--------CR 532 (1268)
Q Consensus 462 ~eKYRP~-tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~--------C~ 532 (1268)
..+-+|. .|.+||||++++.+|...+...++ ..+||.|++|||||++||++++.+.+.......||.. |.
T Consensus 7 ~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~-~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 7 KKKERPVFPFTAIVGQEEMKLALILNVIDPKI-GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred hhccCCCCCHHHHhChHHHHHHHHHhccCCCC-CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 3344555 699999999999999999988887 5789999999999999999999997655444445552 22
Q ss_pred cccccccC--------CCccEEEEcCC--CC---cChHHHHHHHHHHHc--CC-CCCCCCcEEEEEeCCCCCCHHHHHHH
Q 000818 533 ECNDFISG--------KSRNFMEVDGT--NK---KGLDRVRYILKHLSA--GL-PSASPRFKVFVIDECHLLPSKTWLAF 596 (1268)
Q Consensus 533 sC~~i~sG--------~s~dfIEIDaS--s~---~gId~IReLIEea~~--~p-p~~~g~~KVIIIDEaD~LS~ea~naL 596 (1268)
.|.....+ ...+++.+-.. .. .++|- ...+..-.. .+ .....+..+++|||++.|++..+..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~-~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDI-EKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccH-HHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 33322211 12344444321 11 11221 111111100 01 12345678999999999999999999
Q ss_pred HHHHcCC-------------CCcEEEEEEeCCC-C-CcchhhhcceeE-EEecCCCH-HHHHHHHHHHHH----------
Q 000818 597 LKFLEEP-------------PQRVVFIFITTDI-D-NVPRSIQSRCQK-YLFNKIKD-GDIVARLRKISA---------- 649 (1268)
Q Consensus 597 LK~LEep-------------p~~vVfILaTn~~-e-KL~pAL~SRcq~-I~F~pLs~-eEI~~iL~kiak---------- 649 (1268)
+..|++. +.++++| +|.++ + .+++++..|+.. +.+..+.. ++-.++|++...
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfivi-aT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~ 243 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLV-GSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFRE 243 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEE-eccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhh
Confidence 9999763 2233333 33333 2 589999999965 67776663 444444443211
Q ss_pred -------------------hcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH---HHh-C-CccCHHHHHHHhccc
Q 000818 650 -------------------EENLNVEPDALDLIALNA---D-GSLRDAETMLDQL---SLL-G-KRITSSLVNELVGVV 700 (1268)
Q Consensus 650 -------------------kEgi~Id~dALelLA~~S---~-GDLRdAinlLEqL---sll-g-k~IT~edV~eLVG~v 700 (1268)
-..+.++++.+++|++.+ + -++|..+.++..+ +++ | ..++.+||..++..+
T Consensus 244 ~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 244 KYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred hhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 125778999988888866 2 3688877777655 233 3 478999998877543
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=136.35 Aligned_cols=221 Identities=14% Similarity=0.161 Sum_probs=136.7
Q ss_pred CCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc-------cccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE-------CNDFIS 539 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s-------C~~i~s 539 (1268)
|..|-.=.++..++..+...+..+ .+.++|+||+|+|||++++.++..+.+.... -|..+.. ...+..
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~---~~~~~~~~~~~~~~l~~i~~ 93 (269)
T TIGR03015 19 PDFFYPSKGHKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKRLDQERVV---AAKLVNTRVDAEDLLRMVAA 93 (269)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE---EeeeeCCCCCHHHHHHHHHH
Confidence 444333344566666666666544 3679999999999999999999998642110 0111000 000100
Q ss_pred CCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcC---CCCcEEEEEEeCCC
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE---PPQRVVFIFITTDI 616 (1268)
Q Consensus 540 G~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEe---pp~~vVfILaTn~~ 616 (1268)
.+.+..........+..+.+.+.... ..+...||||||+|.+.....+.|..+.+- ....+.||++. .+
T Consensus 94 -----~lG~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~ 165 (269)
T TIGR03015 94 -----DFGLETEGRDKAALLRELEDFLIEQF--AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG-QP 165 (269)
T ss_pred -----HcCCCCCCCCHHHHHHHHHHHHHHHH--hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC-CH
Confidence 00011111111122223322221111 235567999999999998887766544432 11223344443 32
Q ss_pred C---C----cchhhhcce-eEEEecCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000818 617 D---N----VPRSIQSRC-QKYLFNKIKDGDIVARLRKISAEEN----LNVEPDALDLIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 617 e---K----L~pAL~SRc-q~I~F~pLs~eEI~~iL~kiakkEg----i~Id~dALelLA~~S~GDLRdAinlLEqLsll 684 (1268)
. . -...+.+|. ..+.+.+++.+++..++...+...+ ..+++++++.|++.++|++|.+..+++.+...
T Consensus 166 ~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 166 EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 2 1 133577775 4689999999999999998887655 46899999999999999999988888877443
Q ss_pred -----CCccCHHHHHHHhccc
Q 000818 685 -----GKRITSSLVNELVGVV 700 (1268)
Q Consensus 685 -----gk~IT~edV~eLVG~v 700 (1268)
.+.||.++|.+++..+
T Consensus 246 a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 246 AFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHcCCCCCCHHHHHHHHHHh
Confidence 3689999999887654
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=158.18 Aligned_cols=200 Identities=19% Similarity=0.272 Sum_probs=137.8
Q ss_pred CccccCcHHHHHHHHHHHHcC--------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCC
Q 000818 470 FDELIGQNIVVQSLVNTISRG--------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGK 541 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksg--------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~ 541 (1268)
-..|+||+.++..+..+|... ++..++||+||+|||||++|++||+.+.+.. .++-. -.|..+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~----~~~i~-~d~s~~~~~~ 638 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE----DAMVR-IDMSEYMEKH 638 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC----CcEEE-Eechhhcccc
Confidence 356899999999999999753 3346799999999999999999999985421 11100 0111111000
Q ss_pred CccEEEEcC--CCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEE
Q 000818 542 SRNFMEVDG--TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVV 608 (1268)
Q Consensus 542 s~dfIEIDa--Ss~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vV 608 (1268)
. +..+-+ ....|.+....+.+.+...| +.||||||++.+++..++.|+++|+++. .+++
T Consensus 639 ~--~~~l~g~~~g~~g~~~~g~l~~~v~~~p------~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 639 S--VARLIGAPPGYVGYEEGGQLTEAVRRKP------YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred h--HHHhcCCCCCccCcccccHHHHHHHcCC------CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 0 000001 11223333345556655433 4699999999999999999999998762 5677
Q ss_pred EEEEeCCCC-------------------------Ccchhhhcce-eEEEecCCCHHHHHHHHHHHHH-------hc--CC
Q 000818 609 FIFITTDID-------------------------NVPRSIQSRC-QKYLFNKIKDGDIVARLRKISA-------EE--NL 653 (1268)
Q Consensus 609 fILaTn~~e-------------------------KL~pAL~SRc-q~I~F~pLs~eEI~~iL~kiak-------kE--gi 653 (1268)
||++||... .+.|.+..|+ .++.|.|++.+++.+++..... .. .+
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l 790 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL 790 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 888888631 1346778888 5699999999998888765543 22 35
Q ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 000818 654 NVEPDALDLIALNA---DGSLRDAETMLDQLS 682 (1268)
Q Consensus 654 ~Id~dALelLA~~S---~GDLRdAinlLEqLs 682 (1268)
.++++++++|++.. .++.|.+.+.+++..
T Consensus 791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 78999999999974 588999888888754
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=158.29 Aligned_cols=203 Identities=19% Similarity=0.296 Sum_probs=134.0
Q ss_pred CCCCccccCcHHHHHHHHHHHHcC--------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRG--------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksg--------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
-..+..|+||+.++..|..+|... ++..++||+||+|||||++|++||+.+.+... + ..+-.|..+.
T Consensus 564 ~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~----~-~i~id~se~~ 638 (857)
T PRK10865 564 QELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDD----A-MVRIDMSEFM 638 (857)
T ss_pred HHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC----c-EEEEEhHHhh
Confidence 356778999999999999988743 22247999999999999999999999853211 1 1112222221
Q ss_pred cCCC-ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------Cc
Q 000818 539 SGKS-RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QR 606 (1268)
Q Consensus 539 sG~s-~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~ 606 (1268)
.... ..++- .+....|.+....+.+.+... .+.||||||++.+++..++.|+++|+++. .+
T Consensus 639 ~~~~~~~LiG-~~pgy~g~~~~g~l~~~v~~~------p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 639 EKHSVSRLVG-APPGYVGYEEGGYLTEAVRRR------PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred hhhhHHHHhC-CCCcccccchhHHHHHHHHhC------CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecc
Confidence 1000 00000 001111222223344444432 34699999999999999999999998752 45
Q ss_pred EEEEEEeCCC-------------------------CCcchhhhcce-eEEEecCCCHHHHHHHHHHHHHh-------cC-
Q 000818 607 VVFIFITTDI-------------------------DNVPRSIQSRC-QKYLFNKIKDGDIVARLRKISAE-------EN- 652 (1268)
Q Consensus 607 vVfILaTn~~-------------------------eKL~pAL~SRc-q~I~F~pLs~eEI~~iL~kiakk-------Eg- 652 (1268)
++||++||.. ..+.|++.+|+ .++.|.|+..+++..++...+.+ .+
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi 791 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGY 791 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6688888762 12567899999 77999999999998887666543 13
Q ss_pred -CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Q 000818 653 -LNVEPDALDLIALNAD---GSLRDAETMLDQL 681 (1268)
Q Consensus 653 -i~Id~dALelLA~~S~---GDLRdAinlLEqL 681 (1268)
+.++++++++|+...- -..|-+.+.+++.
T Consensus 792 ~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 792 EIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred cCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 4679999999998652 1456666665553
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-12 Score=154.06 Aligned_cols=183 Identities=20% Similarity=0.311 Sum_probs=137.0
Q ss_pred ccccCcHHHHHHHHHHHHc--------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 471 DELIGQNIVVQSLVNTISR--------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIks--------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
..|+||++++..+.++|+. .++...+||.||.|+|||.+|++||..|+. ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg---------------------~e 549 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG---------------------DE 549 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC---------------------CC
Confidence 4689999999999999985 344468999999999999999999999952 12
Q ss_pred ccEEEEcCCC----------------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC--
Q 000818 543 RNFMEVDGTN----------------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-- 604 (1268)
Q Consensus 543 ~dfIEIDaSs----------------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-- 604 (1268)
..++.||.++ +.|.++-..|.+.++..| |.||++||+++-+++.+|.||++|+++.
T Consensus 550 ~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~P------ySViLlDEIEKAHpdV~nilLQVlDdGrLT 623 (786)
T COG0542 550 QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKP------YSVILLDEIEKAHPDVFNLLLQVLDDGRLT 623 (786)
T ss_pred ccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCC------CeEEEechhhhcCHHHHHHHHHHhcCCeee
Confidence 3556666443 334555556677776544 6699999999999999999999999753
Q ss_pred ---------CcEEEEEEeCCCC----------------------------Ccchhhhccee-EEEecCCCHHHHHHHHHH
Q 000818 605 ---------QRVVFIFITTDID----------------------------NVPRSIQSRCQ-KYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 605 ---------~~vVfILaTn~~e----------------------------KL~pAL~SRcq-~I~F~pLs~eEI~~iL~k 646 (1268)
.+++||||+|--. .+.|.++.|.. +|.|.+++.+++.+++..
T Consensus 624 D~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 624 DGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred cCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHH
Confidence 5788888877331 14678888987 799999999998887755
Q ss_pred HHH-------hc--CCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Q 000818 647 ISA-------EE--NLNVEPDALDLIALNAD---GSLRDAETMLDQ 680 (1268)
Q Consensus 647 iak-------kE--gi~Id~dALelLA~~S~---GDLRdAinlLEq 680 (1268)
.+. +. .+.+++++.++|+...- ...|-+...|++
T Consensus 704 ~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 704 QLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 433 22 34679999999999762 234444444443
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=132.19 Aligned_cols=189 Identities=23% Similarity=0.301 Sum_probs=142.3
Q ss_pred cCCCCCccccCcHHHHHHHHHHH---HcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCC
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTI---SRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGK 541 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aI---ksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~ 541 (1268)
..|..+++|+|-+...+.|.+.. ..|.+++++||||++|||||++++++..++.. .
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~---------------------~ 79 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------Q 79 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh---------------------c
Confidence 34788999999998888877544 46888899999999999999999999988742 2
Q ss_pred CccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHc----CCCCcEEEEEEeCCC
Q 000818 542 SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-SKTWLAFLKFLE----EPPQRVVFIFITTDI 616 (1268)
Q Consensus 542 s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-~ea~naLLK~LE----epp~~vVfILaTn~~ 616 (1268)
+..+|++...+ +..+..+++.+...+. +=|||+|+.-.=. ......|..+|| ..|.+++|..|+|.-
T Consensus 80 GLRlIev~k~~---L~~l~~l~~~l~~~~~-----kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 80 GLRLIEVSKED---LGDLPELLDLLRDRPY-----KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred CceEEEECHHH---hccHHHHHHHHhcCCC-----CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 46889998765 4456666777664442 3389999865322 334556666665 567888777777765
Q ss_pred CCcch-----------------------hhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHc
Q 000818 617 DNVPR-----------------------SIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEP-----DALDLIALNA 667 (1268)
Q Consensus 617 eKL~p-----------------------AL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~-----dALelLA~~S 667 (1268)
+-++. +|..|+.. +.|.+++.++..+++...+.+.|+.++. +|+++.....
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 42211 45567754 9999999999999999999999999984 5677777777
Q ss_pred CCCHHHHHHHHHHHH
Q 000818 668 DGSLRDAETMLDQLS 682 (1268)
Q Consensus 668 ~GDLRdAinlLEqLs 682 (1268)
+.+.|.|.+.++.+.
T Consensus 232 ~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 232 GRSGRTARQFIDDLA 246 (249)
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999887654
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-12 Score=123.48 Aligned_cols=108 Identities=31% Similarity=0.480 Sum_probs=87.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCc------ChHHHHHHHHHHHcC
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK------GLDRVRYILKHLSAG 569 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~------gId~IReLIEea~~~ 569 (1268)
+||+||||||||++|+.+|+.+ +..++++++.... ....+..+++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------------------------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------------------------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------------------------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc------------------------cccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999998 4578888876532 245667777776543
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHH-----------HHHHHHHHcCCCC---cEEEEEEeCCCCCcchhhh-cceeE-EEe
Q 000818 570 LPSASPRFKVFVIDECHLLPSKT-----------WLAFLKFLEEPPQ---RVVFIFITTDIDNVPRSIQ-SRCQK-YLF 632 (1268)
Q Consensus 570 pp~~~g~~KVIIIDEaD~LS~ea-----------~naLLK~LEepp~---~vVfILaTn~~eKL~pAL~-SRcq~-I~F 632 (1268)
. ...||||||+|.+.... .+.|+..++.... .+++|++|+..+++++++. +||.. |.|
T Consensus 57 ~-----~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 57 A-----KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp S-----TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred c-----cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 2 34699999999998765 7889999987655 5999999999999999999 99976 555
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=142.45 Aligned_cols=181 Identities=16% Similarity=0.223 Sum_probs=126.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHH----c-------CC-CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTIS----R-------GR-IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIk----s-------gR-i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
+|.+|+-|+-.+...+.|.+-+. + |+ ....||||||||||||+++-|+|+.|
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L---------------- 259 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL---------------- 259 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------------
Confidence 47899999988877776665443 2 22 23589999999999999999999999
Q ss_pred ccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-------H-----------HHHHH
Q 000818 534 CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-------S-----------KTWLA 595 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-------~-----------ea~na 595 (1268)
..+++-++-++...-++++.|+-... .+-||||+++|--. + -++.-
T Consensus 260 --------~ydIydLeLt~v~~n~dLr~LL~~t~--------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSG 323 (457)
T KOG0743|consen 260 --------NYDIYDLELTEVKLDSDLRHLLLATP--------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSG 323 (457)
T ss_pred --------CCceEEeeeccccCcHHHHHHHHhCC--------CCcEEEEeecccccccccccccccccccCCcceeehHH
Confidence 56777777665444456777777643 34499999998531 1 13566
Q ss_pred HHHHHcCCC----CcEEEEEEeCCCCCcchhhhcceeE---EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Q 000818 596 FLKFLEEPP----QRVVFIFITTDIDNVPRSIQSRCQK---YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNAD 668 (1268)
Q Consensus 596 LLK~LEepp----~~vVfILaTn~~eKL~pAL~SRcq~---I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~ 668 (1268)
||.+++..- ..-++||+||..++|+|||++++.+ |++.-.+.+++.......+.-+. +....
T Consensus 324 LLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~-------- 392 (457)
T KOG0743|consen 324 LLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLF-------- 392 (457)
T ss_pred hhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Ccchh--------
Confidence 999987542 3568999999999999999996643 88888888777766665542211 22222
Q ss_pred CCHHHHHHHHHHHHHhCCccCHHHHHHHh
Q 000818 669 GSLRDAETMLDQLSLLGKRITSSLVNELV 697 (1268)
Q Consensus 669 GDLRdAinlLEqLsllgk~IT~edV~eLV 697 (1268)
..++. ...+..||+++|.+.+
T Consensus 393 -------~eie~-l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 393 -------DEIER-LIEETEVTPAQVAEEL 413 (457)
T ss_pred -------HHHHH-HhhcCccCHHHHHHHH
Confidence 22333 2235578999887765
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-11 Score=131.25 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChH
Q 000818 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLD 557 (1268)
Q Consensus 478 ~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId 557 (1268)
.+++.+..++..++ .+||+||+|||||++|+.||+.++ ..++.+++.......
T Consensus 9 ~l~~~~l~~l~~g~---~vLL~G~~GtGKT~lA~~la~~lg------------------------~~~~~i~~~~~~~~~ 61 (262)
T TIGR02640 9 RVTSRALRYLKSGY---PVHLRGPAGTGKTTLAMHVARKRD------------------------RPVMLINGDAELTTS 61 (262)
T ss_pred HHHHHHHHHHhcCC---eEEEEcCCCCCHHHHHHHHHHHhC------------------------CCEEEEeCCccCCHH
Confidence 44555666666654 579999999999999999998772 233444332211111
Q ss_pred HH-------------HHHHHHHHc---------CC-CCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC--------
Q 000818 558 RV-------------RYILKHLSA---------GL-PSA--SPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-------- 604 (1268)
Q Consensus 558 ~I-------------ReLIEea~~---------~p-p~~--~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-------- 604 (1268)
++ ..++..+.. .+ +.. .....+++|||++.+.++.++.|+.+|++..
T Consensus 62 dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~ 141 (262)
T TIGR02640 62 DLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRG 141 (262)
T ss_pred HHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCC
Confidence 00 011000000 00 000 1223499999999999999999999997531
Q ss_pred --------CcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc----
Q 000818 605 --------QRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNA---- 667 (1268)
Q Consensus 605 --------~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S---- 667 (1268)
+++.+|+++|... .+++++..||..+.+..|+.++...+|...+ .++++.++.|+..+
T Consensus 142 ~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 142 TSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFR 216 (262)
T ss_pred CCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHH
Confidence 3556777777542 5688999999999999999988888887653 46677666666544
Q ss_pred ------CCCHHHHHHHHHHHHHhC--CccCHHHHHHHh
Q 000818 668 ------DGSLRDAETMLDQLSLLG--KRITSSLVNELV 697 (1268)
Q Consensus 668 ------~GDLRdAinlLEqLsllg--k~IT~edV~eLV 697 (1268)
.-.+|.++.+...+..++ ..++.++|.++.
T Consensus 217 ~~~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 217 ASGDEITSGLRASLMIAEVATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred hhCCccCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 113777777777776654 345666666555
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=143.52 Aligned_cols=183 Identities=21% Similarity=0.279 Sum_probs=116.3
Q ss_pred ccCcHHHHHHHHHHHHc----C-----------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 000818 473 LIGQNIVVQSLVNTISR----G-----------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks----g-----------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i 537 (1268)
||||+.+++.|..++.. - ....++||+||+|||||++|++||+.++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------------------- 133 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------------------- 133 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-------------------
Confidence 89999999999777631 1 0135799999999999999999999883
Q ss_pred ccCCCccEEEEcCCCC-----cC--hHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------------HHHHH
Q 000818 538 ISGKSRNFMEVDGTNK-----KG--LDR-VRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTWLA 595 (1268)
Q Consensus 538 ~sG~s~dfIEIDaSs~-----~g--Id~-IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------------ea~na 595 (1268)
.+|+.++++.. .| ++. +..+++...... ....+.||||||+|.++. ..+++
T Consensus 134 -----~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~--~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~ 206 (412)
T PRK05342 134 -----VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDV--EKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQA 206 (412)
T ss_pred -----CCceecchhhcccCCcccchHHHHHHHHHHhccccH--HHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHH
Confidence 23444443321 11 122 122222211100 124567999999999975 37899
Q ss_pred HHHHHcCCC---------------------CcEEEEEEeCCC------------------------------C-------
Q 000818 596 FLKFLEEPP---------------------QRVVFIFITTDI------------------------------D------- 617 (1268)
Q Consensus 596 LLK~LEepp---------------------~~vVfILaTn~~------------------------------e------- 617 (1268)
||++||... .++.||+..+-. .
T Consensus 207 LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~ 286 (412)
T PRK05342 207 LLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVE 286 (412)
T ss_pred HHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcC
Confidence 999998421 122233211100 0
Q ss_pred -------CcchhhhcceeE-EEecCCCHHHHHHHHHH----H-------HHhcC--CCCCHHHHHHHHHHc---CCCHHH
Q 000818 618 -------NVPRSIQSRCQK-YLFNKIKDGDIVARLRK----I-------SAEEN--LNVEPDALDLIALNA---DGSLRD 673 (1268)
Q Consensus 618 -------KL~pAL~SRcq~-I~F~pLs~eEI~~iL~k----i-------akkEg--i~Id~dALelLA~~S---~GDLRd 673 (1268)
-+.|.++.|+.. +.|.+++.+++..++.. + +...+ +.++++++.+|++.+ .-..|.
T Consensus 287 ~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~ 366 (412)
T PRK05342 287 PEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARG 366 (412)
T ss_pred HHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCch
Confidence 036777888854 89999999999998862 2 22334 458999999999975 223555
Q ss_pred HHHHHHHH
Q 000818 674 AETMLDQL 681 (1268)
Q Consensus 674 AinlLEqL 681 (1268)
+...|++.
T Consensus 367 Lrriie~~ 374 (412)
T PRK05342 367 LRSILEEI 374 (412)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=139.48 Aligned_cols=206 Identities=17% Similarity=0.253 Sum_probs=141.7
Q ss_pred CCccccC-c--HHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 469 FFDELIG-Q--NIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 469 tFdDLVG-Q--e~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
+|+.+|. . ..+......+... |...+.++||||.|.|||+|+++++.++....+ ...
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-------------------~a~ 145 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-------------------NAR 145 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-------------------Cce
Confidence 6777663 2 3333333444332 334578899999999999999999999853322 345
Q ss_pred EEEEcCCCCcChHHHHHH----HHHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcCCCC-cEEEEEEeCCCC
Q 000818 545 FMEVDGTNKKGLDRVRYI----LKHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEEPPQ-RVVFIFITTDID 617 (1268)
Q Consensus 545 fIEIDaSs~~gId~IReL----IEea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEepp~-~vVfILaTn~~e 617 (1268)
++.+.+.... -+-+..+ ++.+... - ...+++||+++.+... .+..|..++..-.. .-.+|+++..++
T Consensus 146 v~y~~se~f~-~~~v~a~~~~~~~~Fk~~----y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 146 VVYLTSEDFT-NDFVKALRDNEMEKFKEK----Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred EEeccHHHHH-HHHHHHHHhhhHHHHHHh----h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 5665543310 0111111 1122211 1 3458999999998643 24444444332111 125677776654
Q ss_pred ----Ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC
Q 000818 618 ----NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL----GK 686 (1268)
Q Consensus 618 ----KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsll----gk 686 (1268)
.+.+.|+||+ ..+...+|+.+....+|++.+...++.++++++.+|+.....|+|.++..|+++..+ +.
T Consensus 220 ~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~ 299 (408)
T COG0593 220 KELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKR 299 (408)
T ss_pred hhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCc
Confidence 3568899987 459999999999999999999999999999999999999999999999999998654 56
Q ss_pred ccCHHHHHHHhcc
Q 000818 687 RITSSLVNELVGV 699 (1268)
Q Consensus 687 ~IT~edV~eLVG~ 699 (1268)
.||.+.|.+++..
T Consensus 300 ~iTi~~v~e~L~~ 312 (408)
T COG0593 300 AITIDLVKEILKD 312 (408)
T ss_pred cCcHHHHHHHHHH
Confidence 8999999988754
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=144.30 Aligned_cols=210 Identities=19% Similarity=0.211 Sum_probs=148.9
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHcC-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCC
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISRG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGK 541 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIksg-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~ 541 (1268)
.+++..+|++|+|+...++.+.+.+..- .....+||+|++||||+++|++|..... ..
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~---------------------r~ 246 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP---------------------RA 246 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC---------------------CC
Confidence 3466678999999999998888877642 3345789999999999999999987641 12
Q ss_pred CccEEEEcCCCCcChHHHHH-HHHHHHc--------CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-------
Q 000818 542 SRNFMEVDGTNKKGLDRVRY-ILKHLSA--------GLP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP------- 604 (1268)
Q Consensus 542 s~dfIEIDaSs~~gId~IRe-LIEea~~--------~pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp------- 604 (1268)
...|+.||++.... +.+.. ++..... ... ...+...++||||++.|+...+..|+++|++..
T Consensus 247 ~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 247 KRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred CCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCC
Confidence 45889999876321 11111 1111000 000 113456799999999999999999999998642
Q ss_pred ----CcEEEEEEeCCCC-------CcchhhhcceeE--EEecCCC--HHHHHHHHHHHHH----hcC--CCCCHHHHHHH
Q 000818 605 ----QRVVFIFITTDID-------NVPRSIQSRCQK--YLFNKIK--DGDIVARLRKISA----EEN--LNVEPDALDLI 663 (1268)
Q Consensus 605 ----~~vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs--~eEI~~iL~kiak----kEg--i~Id~dALelL 663 (1268)
.++.||++|+..- .+.+.|..|+.. |.++|+. .++|..++..++. +.+ +.+++++++.|
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 2478888887541 356677777754 6677776 4666655544443 333 57999999999
Q ss_pred HHHc-CCCHHHHHHHHHHHHHh--CCccCHHHHH
Q 000818 664 ALNA-DGSLRDAETMLDQLSLL--GKRITSSLVN 694 (1268)
Q Consensus 664 A~~S-~GDLRdAinlLEqLsll--gk~IT~edV~ 694 (1268)
..+. .||+|.+.+.++.++.. +..|+.+++.
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 9986 99999999999998865 4578888864
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-11 Score=149.88 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=128.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
...+|+||+|.+.+++.|.+.+.. -..+..+|||||+|||||++|+++|+.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--------------- 237 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--------------- 237 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---------------
Confidence 456899999999999999887742 13446899999999999999999999872
Q ss_pred ccccccCCCccEEEEcCCCC----c--ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHH
Q 000818 534 CNDFISGKSRNFMEVDGTNK----K--GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTWLAF 596 (1268)
Q Consensus 534 C~~i~sG~s~dfIEIDaSs~----~--gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~naL 596 (1268)
..++.+++... . ....++.+++.+.... ..||||||+|.+.. ...+.|
T Consensus 238 ---------~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~------p~il~iDEid~l~~~r~~~~~~~~~~~~~~L 302 (733)
T TIGR01243 238 ---------AYFISINGPEIMSKYYGESEERLREIFKEAEENA------PSIIFIDEIDAIAPKREEVTGEVEKRVVAQL 302 (733)
T ss_pred ---------CeEEEEecHHHhcccccHHHHHHHHHHHHHHhcC------CcEEEeehhhhhcccccCCcchHHHHHHHHH
Confidence 34556654321 1 1345777777765432 34999999998742 346778
Q ss_pred HHHHcCC--CCcEEEEEEeCCCCCcchhhhc--cee-EEEecCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCC
Q 000818 597 LKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQ-KYLFNKIKDGDIVARLRKISAEENLNV-EPDALDLIALNADGS 670 (1268)
Q Consensus 597 LK~LEep--p~~vVfILaTn~~eKL~pAL~S--Rcq-~I~F~pLs~eEI~~iL~kiakkEgi~I-d~dALelLA~~S~GD 670 (1268)
+..|+.. ...+++|++||.++.+++++++ |+. .+.|..|+.++...+|+..... +.+ ++..++.|+..+.|-
T Consensus 303 l~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~ 380 (733)
T TIGR01243 303 LTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGF 380 (733)
T ss_pred HHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCC
Confidence 8888753 2457778899999999999987 664 4889999999998888865543 333 234577888888775
Q ss_pred HHH
Q 000818 671 LRD 673 (1268)
Q Consensus 671 LRd 673 (1268)
...
T Consensus 381 ~ga 383 (733)
T TIGR01243 381 VGA 383 (733)
T ss_pred CHH
Confidence 443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=129.25 Aligned_cols=167 Identities=23% Similarity=0.310 Sum_probs=122.2
Q ss_pred CCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 468 IFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
.++.|+-|-+...+.+++++. .-.++..+|+|||||||||.+|+++|...
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------------------ 213 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------------------ 213 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------------------
Confidence 478888888888888887775 23456789999999999999999998775
Q ss_pred ccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHH
Q 000818 536 DFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-----------TWLAFLK 598 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e-----------a~naLLK 598 (1268)
...||.+.+++. .|..-+|+++.-+....|. ||||||+|.+... .+..|+.
T Consensus 214 ------~a~firvvgsefvqkylgegprmvrdvfrlakenaps------iifideidaiatkrfdaqtgadrevqril~e 281 (408)
T KOG0727|consen 214 ------TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPS------IIFIDEIDAIATKRFDAQTGADREVQRILIE 281 (408)
T ss_pred ------chheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCc------EEEeehhhhHhhhhccccccccHHHHHHHHH
Confidence 457888877652 2345577888777665543 9999999988533 3445555
Q ss_pred HHc---C--CCCcEEEEEEeCCCCCcchhhhcce--e-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 000818 599 FLE---E--PPQRVVFIFITTDIDNVPRSIQSRC--Q-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664 (1268)
Q Consensus 599 ~LE---e--pp~~vVfILaTn~~eKL~pAL~SRc--q-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA 664 (1268)
+|. . ...++.+|++||..+.|+|++++-+ . .|+|+.++..+-+-+...++.+.++.-+-+.-.+++
T Consensus 282 llnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~ 355 (408)
T KOG0727|consen 282 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVA 355 (408)
T ss_pred HHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhc
Confidence 553 2 3468999999999999999999854 3 399998888887777788887776543333333333
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=145.74 Aligned_cols=191 Identities=20% Similarity=0.342 Sum_probs=133.7
Q ss_pred cccCcHHHHHHHHHHHH-----cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 472 ELIGQNIVVQSLVNTIS-----RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIk-----sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
|-.|-+.+.+.+.+.+. ...-++.++|+||||+|||++++.+|++++. ....+..|.-.|--
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R-------------kfvR~sLGGvrDEA 390 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR-------------KFVRISLGGVRDEA 390 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC-------------CEEEEecCccccHH
Confidence 44677888888877664 2223489999999999999999999999942 11223333333333
Q ss_pred EEcCCCCcCh----HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHc-------------CC--
Q 000818 547 EVDGTNKKGL----DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK----TWLAFLKFLE-------------EP-- 603 (1268)
Q Consensus 547 EIDaSs~~gI----d~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e----a~naLLK~LE-------------ep-- 603 (1268)
||-+.-.+.+ ..|.+-+..+.. ...|++|||+|.|+.. -..+||.+|+ -+
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka~~-------~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKAGV-------KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred HhccccccccccCChHHHHHHHHhCC-------cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 3333221111 233344444433 3349999999999754 3678888875 11
Q ss_pred CCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHH-----HHhc-----CCCCCHHHHHHHHHHc--CCCH
Q 000818 604 PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKI-----SAEE-----NLNVEPDALDLIALNA--DGSL 671 (1268)
Q Consensus 604 p~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~ki-----akkE-----gi~Id~dALelLA~~S--~GDL 671 (1268)
-..|.||.++|..+.+|.+|+.|..+|.+.-++.++-..+.++. .++. .+.|+++|+..|++.. .-..
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 25799999999999999999999999999999999987776554 3333 4568999999999876 4457
Q ss_pred HHHHHHHHHHH
Q 000818 672 RDAETMLDQLS 682 (1268)
Q Consensus 672 RdAinlLEqLs 682 (1268)
|.+...|.+++
T Consensus 544 R~LeR~i~ki~ 554 (782)
T COG0466 544 RNLEREIAKIC 554 (782)
T ss_pred hHHHHHHHHHH
Confidence 77777777764
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=147.27 Aligned_cols=191 Identities=24% Similarity=0.373 Sum_probs=136.0
Q ss_pred ccccCcHHHHHHHHHHHHcCCC-----CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 471 DELIGQNIVVQSLVNTISRGRI-----APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIksgRi-----~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
+|-.|.+++++.+.+.|.-+++ ++.+.|+||||+|||++++.+|++|+.. ..+|..|.-.++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-------------FfRfSvGG~tDv 477 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-------------FFRFSVGGMTDV 477 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-------------eEEEeccccccH
Confidence 4557888999999998863332 3679999999999999999999999632 234444444455
Q ss_pred EEEcCCCCcCh----HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHcC-------------C-
Q 000818 546 MEVDGTNKKGL----DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS----KTWLAFLKFLEE-------------P- 603 (1268)
Q Consensus 546 IEIDaSs~~gI----d~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~----ea~naLLK~LEe-------------p- 603 (1268)
-+|.+.-.+.+ ..|.+-++.+... ..||+|||+|.+.. +-..+||.+|+- |
T Consensus 478 AeIkGHRRTYVGAMPGkiIq~LK~v~t~-------NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 478 AEIKGHRRTYVGAMPGKIIQCLKKVKTE-------NPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred HhhcccceeeeccCChHHHHHHHhhCCC-------CceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc
Confidence 55544332222 3444555555443 34899999999963 236788887741 1
Q ss_pred -CCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHH----------hcCCCCCHHHHHHHHHHc--CCC
Q 000818 604 -PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISA----------EENLNVEPDALDLIALNA--DGS 670 (1268)
Q Consensus 604 -p~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiak----------kEgi~Id~dALelLA~~S--~GD 670 (1268)
-..|.||+++|..+.|+++|+.|..+|.+.-+..+|-+.+.++.+. .+.++|+++|+..|++.. .-.
T Consensus 551 DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAG 630 (906)
T ss_pred chhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHh
Confidence 2579999999999999999999999999999999998877666532 235679999998877765 334
Q ss_pred HHHHHHHHHHH
Q 000818 671 LRDAETMLDQL 681 (1268)
Q Consensus 671 LRdAinlLEqL 681 (1268)
+|.+..-++++
T Consensus 631 VRnLqk~iekI 641 (906)
T KOG2004|consen 631 VRNLQKQIEKI 641 (906)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-10 Score=138.59 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=160.9
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc-ccCCCCCCCCCccccccc
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc-e~~e~~~PCg~C~sC~~i 537 (1268)
+.+++.-|-..+|.+||++..++.+.+.+.+.+- +.-+|.|+||+|||.++..||..+.. ..|+.-
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K-NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L------------ 224 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK-NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESL------------ 224 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC-CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHH------------
Confidence 6688889999999999999999999998887664 56688999999999999999999853 222210
Q ss_pred ccCCCccEEEEc------CCCCcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHH
Q 000818 538 ISGKSRNFMEVD------GTNKKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---------SKTWLAFLKFL 600 (1268)
Q Consensus 538 ~sG~s~dfIEID------aSs~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---------~ea~naLLK~L 600 (1268)
....++.+| ++..+| -+.++.+++++...+ ..|+||||+|.+- .++.|.|...|
T Consensus 225 ---~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~------~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL 295 (786)
T COG0542 225 ---KDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK------NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL 295 (786)
T ss_pred ---cCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC------CeEEEEechhhhcCCCcccccccchhhhhHHHH
Confidence 134566665 344444 367889999987532 5699999999882 34678899999
Q ss_pred cCCCCcEEEEEEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHcCCC-
Q 000818 601 EEPPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE----NLNVEPDALDLIALNADGS- 670 (1268)
Q Consensus 601 Eepp~~vVfILaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkE----gi~Id~dALelLA~~S~GD- 670 (1268)
..+ ...+|.+|+..+ .-+++|.+|+|.|....|+.++.+.+|+.+..+. ++.|+++|+...+..+...
T Consensus 296 ARG--eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 296 ARG--ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred hcC--CeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 886 788899998764 3588999999999999999999999998887664 8899999999999887443
Q ss_pred -----HHHHHHHHHHHHHh
Q 000818 671 -----LRDAETMLDQLSLL 684 (1268)
Q Consensus 671 -----LRdAinlLEqLsll 684 (1268)
+..|+.+||.++..
T Consensus 374 ~dR~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGAR 392 (786)
T ss_pred ccCCCCchHHHHHHHHHHH
Confidence 34689999988653
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-11 Score=134.58 Aligned_cols=187 Identities=22% Similarity=0.272 Sum_probs=127.3
Q ss_pred CCCccccCcHHHHHHHHHHHH----------cC---CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 468 IFFDELIGQNIVVQSLVNTIS----------RG---RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIk----------sg---Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
.+|+||-|-+.++++|++.+. .+ +.+..+|||||||||||.+|+++|++.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------------- 151 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------------- 151 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-----------------
Confidence 369999999999999998774 12 345689999999999999999999998
Q ss_pred cccccCCCccEEEEcCCCCcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-------HHH----HHHH---H
Q 000818 535 NDFISGKSRNFMEVDGTNKKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-------KTW----LAFL---K 598 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-------ea~----naLL---K 598 (1268)
+.+|+-+..+..++ ..+-..+...+...+ ..=...+|||||++.+.. ++- +.|. .
T Consensus 152 -------ga~fInv~~s~lt~KWfgE~eKlv~AvFslA--sKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 152 -------GANFINVSVSNLTSKWFGEAQKLVKAVFSLA--SKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD 222 (386)
T ss_pred -------CCCcceeeccccchhhHHHHHHHHHHHHhhh--hhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 44666666554322 122223333333222 112234999999998751 221 1111 1
Q ss_pred HH-cCCCCcEEEEEEeCCCCCcchhhhcce-eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC-HHHHH
Q 000818 599 FL-EEPPQRVVFIFITTDIDNVPRSIQSRC-QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS-LRDAE 675 (1268)
Q Consensus 599 ~L-Eepp~~vVfILaTn~~eKL~pAL~SRc-q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GD-LRdAi 675 (1268)
-| -.....|.++.|||+|..++.+|++|. .+|+..-|+..+..++|+-+++.|.+. ++-.+..||..+.|- -.++.
T Consensus 223 Gl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLk 301 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLK 301 (386)
T ss_pred cccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHH
Confidence 12 233346777889999999999999996 669999999999999999999999875 333466778888773 33444
Q ss_pred HHHHHH
Q 000818 676 TMLDQL 681 (1268)
Q Consensus 676 nlLEqL 681 (1268)
+++..+
T Consensus 302 elC~~A 307 (386)
T KOG0737|consen 302 ELCRLA 307 (386)
T ss_pred HHHHHH
Confidence 444333
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-11 Score=130.96 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=119.5
Q ss_pred CCCCccccCcHHHHHHHHHHHH----------cCC-CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS----------RGR-IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk----------sgR-i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
-..|+|+.|-+.+.++|++++. .++ +-.++||||||||||+.+|+++|.+.+
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn----------------- 191 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN----------------- 191 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----------------
Confidence 4479999999999999999874 222 336899999999999999999998873
Q ss_pred ccccCCCccEEEEcCCCCc------ChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-------HH----HHHHHH
Q 000818 536 DFISGKSRNFMEVDGTNKK------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-------KT----WLAFLK 598 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~------gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-------ea----~naLLK 598 (1268)
..|+.+..++.. ...-+++|++-++...|. ||||||+|.|.. ++ -..||-
T Consensus 192 -------STFFSvSSSDLvSKWmGESEkLVknLFemARe~kPS------IIFiDEiDslcg~r~enEseasRRIKTEfLV 258 (439)
T KOG0739|consen 192 -------STFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPS------IIFIDEIDSLCGSRSENESEASRRIKTEFLV 258 (439)
T ss_pred -------CceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCc------EEEeehhhhhccCCCCCchHHHHHHHHHHHH
Confidence 345555544321 123467788877765443 999999998842 11 223444
Q ss_pred HHc---CCCCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHcCCC
Q 000818 599 FLE---EPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKI-SAEENLNVEPDALDLIALNADGS 670 (1268)
Q Consensus 599 ~LE---epp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~ki-akkEgi~Id~dALelLA~~S~GD 670 (1268)
.|. .....+.++.+||-+..|+.+|++|+..--+-|++....+..+-++ +-.-...+++..+..|++.++|-
T Consensus 259 QMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 259 QMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred hhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 443 2234677777888889999999999977333455554444444332 22223457888899999988774
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=137.56 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=134.9
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
-+-..++||-|-.++++.|...|.- -+....+|||||||||||.+|-++|...
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~--------------- 725 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS--------------- 725 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---------------
Confidence 3345699999999999988888762 2344679999999999999999999875
Q ss_pred cccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHHHH
Q 000818 533 ECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTWLA 595 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~na 595 (1268)
...||.+.+.+. ...+.+|++++.++...|+ |+|+||+|.+.+ ...|.
T Consensus 726 ---------~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PC------iLFFDEfdSiAPkRGhDsTGVTDRVVNQ 790 (952)
T KOG0735|consen 726 ---------NLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPC------ILFFDEFDSIAPKRGHDSTGVTDRVVNQ 790 (952)
T ss_pred ---------CeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCe------EEEeccccccCcccCCCCCCchHHHHHH
Confidence 567887766541 1246799999999876554 999999999853 35899
Q ss_pred HHHHHc--CCCCcEEEEEEeCCCCCcchhhhcce--eE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Q 000818 596 FLKFLE--EPPQRVVFIFITTDIDNVPRSIQSRC--QK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670 (1268)
Q Consensus 596 LLK~LE--epp~~vVfILaTn~~eKL~pAL~SRc--q~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GD 670 (1268)
||.-|+ +.-..|.++.+|.+++-|+|+|++-+ .. +.++.|+..+..++|+.+....-+ -++..++.+|..++|-
T Consensus 791 lLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~ 869 (952)
T KOG0735|consen 791 LLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGF 869 (952)
T ss_pred HHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCC
Confidence 999987 45567888889999999999999844 44 788888888988988887765433 2344577788877763
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=131.62 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=112.2
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY 530 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~ 530 (1268)
+|..-.+|+|+-|-+..++.+++++. .-+++..++|||+||||||.+|+++|+.-
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------------- 243 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------------- 243 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-------------
Confidence 44445689999999999999999986 34667899999999999999999999775
Q ss_pred cccccccccCCCccEEEEcCCC------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHH
Q 000818 531 CRECNDFISGKSRNFMEVDGTN------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTW 593 (1268)
Q Consensus 531 C~sC~~i~sG~s~dfIEIDaSs------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~ 593 (1268)
+..|+.+-+++ ..|..-+|+++.-+....|. |+||||+|.+.. +.+
T Consensus 244 -----------SATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apS------IvFiDEIdAiGtKRyds~SggerEiQ 306 (440)
T KOG0726|consen 244 -----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS------IVFIDEIDAIGTKRYDSNSGGEREIQ 306 (440)
T ss_pred -----------chhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCc------eEEeehhhhhccccccCCCccHHHHH
Confidence 34455444433 12445678888877655544 999999999853 234
Q ss_pred HHHHHHH---cC--CCCcEEEEEEeCCCCCcchhhhccee---EEEecCCCHHHHHHHH
Q 000818 594 LAFLKFL---EE--PPQRVVFIFITTDIDNVPRSIQSRCQ---KYLFNKIKDGDIVARL 644 (1268)
Q Consensus 594 naLLK~L---Ee--pp~~vVfILaTn~~eKL~pAL~SRcq---~I~F~pLs~eEI~~iL 644 (1268)
..+|.+| +. ....+.+|++||..+.|+|+|.+-.. .|.|..++...-..++
T Consensus 307 rtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf 365 (440)
T KOG0726|consen 307 RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIF 365 (440)
T ss_pred HHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeE
Confidence 4444444 32 24689999999999999999998553 3999888766554443
|
|
| >PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.1e-11 Score=119.00 Aligned_cols=116 Identities=32% Similarity=0.463 Sum_probs=100.3
Q ss_pred cCHHHHHHHhcccchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhh------------
Q 000818 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI------------ 755 (1268)
Q Consensus 688 IT~edV~eLVG~v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~------------ 755 (1268)
||.++|.+++|.+..+.+++|++++..+|..+++..+++++..|.+|..++..|..++|+++..+...
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998876641
Q ss_pred ---cccCCCHHhHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHccCCC
Q 000818 756 ---GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 756 ---~~r~ls~~sle~L~raL~iLsEaDkqLK~S~d~rl~LE~aLL~L~~lp 803 (1268)
..+....++.+.|.+++++|.+++.++|.+.+++++||+++++||.+.
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~ 131 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLK 131 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHh
Confidence 112223577888999999999999999999999999999999999853
|
It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G. |
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-10 Score=124.78 Aligned_cols=119 Identities=27% Similarity=0.350 Sum_probs=101.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC------------CCcchhhhcceeEEEecCCCHHHHHHHHHH
Q 000818 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI------------DNVPRSIQSRCQKYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 579 VIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~------------eKL~pAL~SRcq~I~F~pLs~eEI~~iL~k 646 (1268)
|+||||+|||.-+.+..|.+.||+--..+ +|++||.. +-+|..++.|..+|...|+..+++.++|+-
T Consensus 291 VLFIDEvHMLDIEcFsFlNrAlE~d~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~i 369 (454)
T KOG2680|consen 291 VLFIDEVHMLDIECFSFLNRALENDMAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRI 369 (454)
T ss_pred eEEEeeehhhhhHHHHHHHHHhhhccCcE-EEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHh
Confidence 89999999999999999999999865544 56666643 358889999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHhc
Q 000818 647 ISAEENLNVEPDALDLIALNA-DGSLRDAETMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 647 iakkEgi~Id~dALelLA~~S-~GDLRdAinlLEqLsll-----gk~IT~edV~eLVG 698 (1268)
.|.+|++.++++|+++|.... .-++|.+++++....+. +..+..++|..+..
T Consensus 370 Rc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 370 RCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred hhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 999999999999999999876 66899999999876543 45777777776553
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-10 Score=128.99 Aligned_cols=198 Identities=14% Similarity=0.144 Sum_probs=136.7
Q ss_pred ccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC
Q 000818 473 LIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT 551 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS 551 (1268)
|||+...++.+.+.+.. ......+||+|++||||+++|++|...-. .....|+.+|++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~---------------------r~~~pfv~vnc~ 59 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK---------------------RWQGPLVKLNCA 59 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC---------------------ccCCCeEEEeCC
Confidence 57887777777766653 23345689999999999999999965431 124588899887
Q ss_pred CCcChHHHH-HHHHHHH--c------CC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEEEE
Q 000818 552 NKKGLDRVR-YILKHLS--A------GL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVVFI 610 (1268)
Q Consensus 552 s~~gId~IR-eLIEea~--~------~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vVfI 610 (1268)
... -+.+. .++.... + .. ....+...++||||++.|+...+..|+.+|++.. .++.+|
T Consensus 60 ~~~-~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 138 (329)
T TIGR02974 60 ALS-ENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLV 138 (329)
T ss_pred CCC-hHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEE
Confidence 532 11111 1211100 0 00 0123456799999999999999999999998642 467888
Q ss_pred EEeCCC-------CCcchhhhcceeE--EEecCCC--HHHHHHHHHHH----HHhcC----CCCCHHHHHHHHHHc-CCC
Q 000818 611 FITTDI-------DNVPRSIQSRCQK--YLFNKIK--DGDIVARLRKI----SAEEN----LNVEPDALDLIALNA-DGS 670 (1268)
Q Consensus 611 LaTn~~-------eKL~pAL~SRcq~--I~F~pLs--~eEI~~iL~ki----akkEg----i~Id~dALelLA~~S-~GD 670 (1268)
++|+.. ..+.+.|..|+.. |.++|+. .+||..++..+ +.+.+ ..++++|++.|..+. .||
T Consensus 139 ~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGN 218 (329)
T TIGR02974 139 CATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGN 218 (329)
T ss_pred EechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCch
Confidence 888754 1356788888843 7777776 46666555444 34334 368999999999988 999
Q ss_pred HHHHHHHHHHHHHhC--CccCHHH
Q 000818 671 LRDAETMLDQLSLLG--KRITSSL 692 (1268)
Q Consensus 671 LRdAinlLEqLsllg--k~IT~ed 692 (1268)
+|.+.+.+++++... ..|+.++
T Consensus 219 vrEL~n~i~~~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 219 VRELKNVVERSVYRHGLEEAPIDE 242 (329)
T ss_pred HHHHHHHHHHHHHhCCCCccchhh
Confidence 999999999998764 4566555
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=136.22 Aligned_cols=180 Identities=22% Similarity=0.225 Sum_probs=135.0
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCC
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISR-----------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC 528 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIks-----------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PC 528 (1268)
...+.-++..|+|+.|.+.+.+.|..++.- ..+...+||.||||+|||.+++++|.+.
T Consensus 142 EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------- 210 (428)
T KOG0740|consen 142 EIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------- 210 (428)
T ss_pred HHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-----------
Confidence 345667789999999999999988876641 2334679999999999999999999887
Q ss_pred CCcccccccccCCCccEEEEcCCCCcC------hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH----------
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNKKG------LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT---------- 592 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~~g------Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea---------- 592 (1268)
...|+.|.+++..+ ..-++.++.-++... +-||||||+|.+..+-
T Consensus 211 -------------~atff~iSassLtsK~~Ge~eK~vralf~vAr~~q------PsvifidEidslls~Rs~~e~e~srr 271 (428)
T KOG0740|consen 211 -------------GATFFNISASSLTSKYVGESEKLVRALFKVARSLQ------PSVIFIDEIDSLLSKRSDNEHESSRR 271 (428)
T ss_pred -------------cceEeeccHHHhhhhccChHHHHHHHHHHHHHhcC------CeEEEechhHHHHhhcCCcccccchh
Confidence 44666776655321 234566666665433 3499999999874221
Q ss_pred --HHHHHHHH---cCCCCcEEEEEEeCCCCCcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 000818 593 --WLAFLKFL---EEPPQRVVFIFITTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666 (1268)
Q Consensus 593 --~naLLK~L---Eepp~~vVfILaTn~~eKL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~ 666 (1268)
...|+... -.+..++++|.|||.++.++.+++.|++. +.++.|+.+....++.+.+.+.+..+.+..+..|++.
T Consensus 272 ~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~ 351 (428)
T KOG0740|consen 272 LKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKV 351 (428)
T ss_pred hhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 23344433 23445899999999999999999999976 6677777777777888888888788888999999998
Q ss_pred cCC
Q 000818 667 ADG 669 (1268)
Q Consensus 667 S~G 669 (1268)
++|
T Consensus 352 Teg 354 (428)
T KOG0740|consen 352 TEG 354 (428)
T ss_pred hcC
Confidence 866
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-10 Score=133.27 Aligned_cols=184 Identities=26% Similarity=0.324 Sum_probs=117.0
Q ss_pred ccCcHHHHHHHHHHHHc----------CC-------CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 473 LIGQNIVVQSLVNTISR----------GR-------IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks----------gR-------i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
||||+++++.|..++.+ .. ...++||+||+|+|||++|++||+.++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~----------------- 141 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN----------------- 141 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----------------
Confidence 78999999999877721 11 025799999999999999999998873
Q ss_pred ccccCCCccEEEEcCCC-----CcChHHHHHHHHHHH-cCCC-CCCCCcEEEEEeCCCCCCH--------------HHHH
Q 000818 536 DFISGKSRNFMEVDGTN-----KKGLDRVRYILKHLS-AGLP-SASPRFKVFVIDECHLLPS--------------KTWL 594 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs-----~~gId~IReLIEea~-~~pp-~~~g~~KVIIIDEaD~LS~--------------ea~n 594 (1268)
.+|..++++. ..|.+ ...++..+. ..+. .......||||||+|.++. ..++
T Consensus 142 -------~pf~~~da~~L~~~gyvG~d-~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 142 -------VPFAIADATTLTEAGYVGED-VENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred -------CCeEEechhhcccccccccc-HHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 2333333322 11221 222222221 1110 0123445999999999976 5799
Q ss_pred HHHHHHcCC-------------CCcEEEEEEeCCC---------------------------C-----------------
Q 000818 595 AFLKFLEEP-------------PQRVVFIFITTDI---------------------------D----------------- 617 (1268)
Q Consensus 595 aLLK~LEep-------------p~~vVfILaTn~~---------------------------e----------------- 617 (1268)
+||++||.. -.++++|+|+|-. +
T Consensus 214 ~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 293 (413)
T TIGR00382 214 ALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP 293 (413)
T ss_pred HHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence 999999632 1234455554430 0
Q ss_pred ------Ccchhhhccee-EEEecCCCHHHHHHHHHH----HHHh-------cC--CCCCHHHHHHHHHHc---CCCHHHH
Q 000818 618 ------NVPRSIQSRCQ-KYLFNKIKDGDIVARLRK----ISAE-------EN--LNVEPDALDLIALNA---DGSLRDA 674 (1268)
Q Consensus 618 ------KL~pAL~SRcq-~I~F~pLs~eEI~~iL~k----iakk-------Eg--i~Id~dALelLA~~S---~GDLRdA 674 (1268)
.+.|+++.|+. ++.|.+++.+++.+++.. ++++ .+ +.++++|+++|++.+ .-..|.+
T Consensus 294 ~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~L 373 (413)
T TIGR00382 294 EDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGL 373 (413)
T ss_pred HHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHH
Confidence 14577888885 488999999999998865 2221 23 457899999999975 2235555
Q ss_pred HHHHHHH
Q 000818 675 ETMLDQL 681 (1268)
Q Consensus 675 inlLEqL 681 (1268)
...+++.
T Consensus 374 r~iie~~ 380 (413)
T TIGR00382 374 RSIVEGL 380 (413)
T ss_pred HHHHHHh
Confidence 5666554
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=118.21 Aligned_cols=164 Identities=21% Similarity=0.320 Sum_probs=116.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCC
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g 575 (1268)
|||||+.-.-+...++.+.+.+.... ....+++.+++.. ....++++.+... ++++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~------------------~~~~~~~~~~~~~----~~~~~l~~~~~s~--slF~ 56 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKD------------------FDDFNVIVFDGSE----DDIDELLEELQSP--SLFG 56 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTT------------------EEEEEEEE-STTS-----HHH-HTTTSTTT--TSSS
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCC------------------CccceEEEEcccc----CcHHHHHHHHhcC--CccC
Confidence 89999996666666666666642111 0134667777665 2334466666543 3789
Q ss_pred CcEEEEEeCC----CCCCHHHHHHHHHHHcCCCCcEEEEEEeC-CCC---CcchhhhcceeEEEecCCCHHHHHHHHHHH
Q 000818 576 RFKVFVIDEC----HLLPSKTWLAFLKFLEEPPQRVVFIFITT-DID---NVPRSIQSRCQKYLFNKIKDGDIVARLRKI 647 (1268)
Q Consensus 576 ~~KVIIIDEa----D~LS~ea~naLLK~LEepp~~vVfILaTn-~~e---KL~pAL~SRcq~I~F~pLs~eEI~~iL~ki 647 (1268)
.++||||.++ +....+....|..+++.++.++++|+.+. ..+ ++.+++...+.++.|.++...++..|++..
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~ 136 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKER 136 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHH
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHH
Confidence 9999999999 45667788999999999999999999888 443 467888889999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000818 648 SAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 648 akkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl 683 (1268)
+++.|+.|+++|+++|+..+++|++.+.++|++|++
T Consensus 137 ~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 137 AKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999875
|
7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F. |
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-10 Score=120.88 Aligned_cols=178 Identities=23% Similarity=0.305 Sum_probs=122.1
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC 528 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PC 528 (1268)
.++|....+++=+-|-+..++.+++.|.- -.-+..+|||||||||||.+|+++|..-.|
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c--------- 207 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------- 207 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce---------
Confidence 45666555555555668888888887752 112467999999999999999999987633
Q ss_pred CCcccccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-----------HH
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-----------SK 591 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-----------~e 591 (1268)
.||.+.+++. .|..-+|+++--++...|. |||.||+|.+. .+
T Consensus 208 ---------------~firvsgselvqk~igegsrmvrelfvmarehaps------iifmdeidsigs~r~e~~~ggdse 266 (404)
T KOG0728|consen 208 ---------------TFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS------IIFMDEIDSIGSSRVESGSGGDSE 266 (404)
T ss_pred ---------------EEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCc------eEeeecccccccccccCCCCccHH
Confidence 5667766541 1234467777666655443 99999999884 23
Q ss_pred HHHHHHHHH---c--CCCCcEEEEEEeCCCCCcchhhhccee---EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000818 592 TWLAFLKFL---E--EPPQRVVFIFITTDIDNVPRSIQSRCQ---KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLI 663 (1268)
Q Consensus 592 a~naLLK~L---E--epp~~vVfILaTn~~eKL~pAL~SRcq---~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelL 663 (1268)
.+..+|.+| + +...++.+|++||..+-|++++++-.. .|+|++|+.+....+|+-...+.++.-. -.+..|
T Consensus 267 vqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~ki 345 (404)
T KOG0728|consen 267 VQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKI 345 (404)
T ss_pred HHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHH
Confidence 344444444 4 234688999999999999999998553 3999999999888888776666543210 124455
Q ss_pred HHHcCC
Q 000818 664 ALNADG 669 (1268)
Q Consensus 664 A~~S~G 669 (1268)
|+...|
T Consensus 346 aekm~g 351 (404)
T KOG0728|consen 346 AEKMPG 351 (404)
T ss_pred HHhCCC
Confidence 665544
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-10 Score=130.27 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=114.4
Q ss_pred CccccCcHHHHHHHHHHHHc-------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 470 FDELIGQNIVVQSLVNTISR-------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIks-------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
|++||-++...+.|...... .-+-..+|||||||||||.+|+-||+.- +
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------------------------G 409 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------------------------G 409 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------------------------C
Confidence 89999998877777654431 1122578999999999999999999875 3
Q ss_pred ccEEEEcCCC-----CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---------H---HHHHHHHHHHcCCCC
Q 000818 543 RNFMEVDGTN-----KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---------S---KTWLAFLKFLEEPPQ 605 (1268)
Q Consensus 543 ~dfIEIDaSs-----~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---------~---ea~naLLK~LEepp~ 605 (1268)
+++-.+.+.+ ..++..|..+++.... ..+.-++||||+|.+. . .+.|+||----+...
T Consensus 410 lDYA~mTGGDVAPlG~qaVTkiH~lFDWakk-----S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSr 484 (630)
T KOG0742|consen 410 LDYAIMTGGDVAPLGAQAVTKIHKLFDWAKK-----SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSR 484 (630)
T ss_pred CceehhcCCCccccchHHHHHHHHHHHHHhh-----cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhccccc
Confidence 3444443322 1246678888888764 3455689999999763 2 235666555555667
Q ss_pred cEEEEEEeCCCCCcchhhhcce-eEEEecCCCHHHHHHHHHHHHHhc
Q 000818 606 RVVFIFITTDIDNVPRSIQSRC-QKYLFNKIKDGDIVARLRKISAEE 651 (1268)
Q Consensus 606 ~vVfILaTn~~eKL~pAL~SRc-q~I~F~pLs~eEI~~iL~kiakkE 651 (1268)
.++++++||.+..++-++-.|+ ++++|+.|..++..++|..++.+.
T Consensus 485 divLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 485 DIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 8999999999999999999999 459999999999988888877665
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=136.24 Aligned_cols=208 Identities=17% Similarity=0.150 Sum_probs=142.3
Q ss_pred CCCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 467 PIFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
..+|++|+|....++.+...+.. .+....+||+|++||||+++|+++..... .....|
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~---------------------r~~~pf 379 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE---------------------RAAGPY 379 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC---------------------ccCCCe
Confidence 34799999999888777766653 22334589999999999999999976642 124588
Q ss_pred EEEcCCCCcChHHH-HHHHHHHHcC-----CC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcE
Q 000818 546 MEVDGTNKKGLDRV-RYILKHLSAG-----LP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRV 607 (1268)
Q Consensus 546 IEIDaSs~~gId~I-ReLIEea~~~-----pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~v 607 (1268)
+.+|++... .+.+ .+++...... +. ...+...++||||++.|+...+..|+++|++.. .++
T Consensus 380 v~vnc~~~~-~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 380 IAVNCQLYP-DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred EEEECCCCC-hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 999987632 1111 1222211000 00 012456789999999999999999999998642 256
Q ss_pred EEEEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHHHHHHHh----c--CCCCCHHHHHHHHHHc-CC
Q 000818 608 VFIFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARLRKISAE----E--NLNVEPDALDLIALNA-DG 669 (1268)
Q Consensus 608 VfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL~kiakk----E--gi~Id~dALelLA~~S-~G 669 (1268)
.+|++|+..- .+.+.|.-|... |.++|+.. +||...+..++.+ . .+.+++++++.|..+. .|
T Consensus 459 riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPG 538 (638)
T PRK11388 459 RVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPG 538 (638)
T ss_pred EEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCC
Confidence 7888877641 345556666544 66666654 4555555444432 2 2468999999999988 99
Q ss_pred CHHHHHHHHHHHHHh--CCccCHHHHHHH
Q 000818 670 SLRDAETMLDQLSLL--GKRITSSLVNEL 696 (1268)
Q Consensus 670 DLRdAinlLEqLsll--gk~IT~edV~eL 696 (1268)
|+|.+.+.|+.++.. +..|+.+++...
T Consensus 539 NvreL~~~l~~~~~~~~~~~i~~~~lp~~ 567 (638)
T PRK11388 539 NDFELRSVIENLALSSDNGRIRLSDLPEH 567 (638)
T ss_pred hHHHHHHHHHHHHHhCCCCeecHHHCchh
Confidence 999999999998765 457887776543
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-09 Score=123.12 Aligned_cols=201 Identities=21% Similarity=0.265 Sum_probs=144.2
Q ss_pred CCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
..+.++||+...++.|.+.|.+ ....-.+||+|++||||..+||+|-+.- .....+|+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S---------------------~R~~~PFV 196 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS---------------------PRAKGPFI 196 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC---------------------cccCCCce
Confidence 4688999999999999988864 2333568999999999999999996542 23356899
Q ss_pred EEcCCCCcChHHHHHHHHHHHcC--CCC------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC---------
Q 000818 547 EVDGTNKKGLDRVRYILKHLSAG--LPS------------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--------- 603 (1268)
Q Consensus 547 EIDaSs~~gId~IReLIEea~~~--pp~------------~~g~~KVIIIDEaD~LS~ea~naLLK~LEep--------- 603 (1268)
.||++... . ++++.--+. ... -.+....+||||+..|+-+.|..||++|++.
T Consensus 197 avNcaAip-~----~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 197 AVNCAAIP-E----NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred eeecccCC-H----HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCc
Confidence 99987632 1 233321111 100 1245569999999999999999999999853
Q ss_pred --CCcEEEEEEeCCCC-------CcchhhhcceeEEEe--cCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHH
Q 000818 604 --PQRVVFIFITTDID-------NVPRSIQSRCQKYLF--NKIKD--GDIVA----RLRKISAEEN---LNVEPDALDLI 663 (1268)
Q Consensus 604 --p~~vVfILaTn~~e-------KL~pAL~SRcq~I~F--~pLs~--eEI~~----iL~kiakkEg---i~Id~dALelL 663 (1268)
+.+|.||.+|+..= ++-..|.-|..++.+ +|+.+ +||.- +|++.+.+.+ ..++++|+..|
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 34788899888761 466677778877444 44432 34333 3455555554 46899999999
Q ss_pred HHHc-CCCHHHHHHHHHHHHHh--CCccCHHHHH
Q 000818 664 ALNA-DGSLRDAETMLDQLSLL--GKRITSSLVN 694 (1268)
Q Consensus 664 A~~S-~GDLRdAinlLEqLsll--gk~IT~edV~ 694 (1268)
..+. .||+|.+.|.++.++.+ +..|+.+++.
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 8877 99999999999999876 4567777654
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=131.13 Aligned_cols=204 Identities=18% Similarity=0.254 Sum_probs=143.5
Q ss_pred CCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
.+|++|+|+...++.+.+.+.. .+....+||+|++||||+.+|+.+...- .....+|+
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S---------------------~r~~~pfv 267 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS---------------------GRRDFPFV 267 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc---------------------CcCCCCEE
Confidence 5799999999999998888853 3344679999999999999999996543 12256889
Q ss_pred EEcCCCCcChHHHHHHHHHHHcC--------------CCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-------
Q 000818 547 EVDGTNKKGLDRVRYILKHLSAG--------------LPS-ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP------- 604 (1268)
Q Consensus 547 EIDaSs~~gId~IReLIEea~~~--------------pp~-~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp------- 604 (1268)
.+|++... + .+++..-+. ++. ..+....+||||++.|+...+..|+++|++..
T Consensus 268 ~inC~~l~--e---~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 268 AINCGAIA--E---SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred EeccccCC--h---hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCC
Confidence 99987632 1 222221111 000 12456689999999999999999999998642
Q ss_pred ----CcEEEEEEeCCCC-------Ccchhhhccee--EEEecCCCH--HHHHHHHHH----HHHhcCCCCCHHHHHH---
Q 000818 605 ----QRVVFIFITTDID-------NVPRSIQSRCQ--KYLFNKIKD--GDIVARLRK----ISAEENLNVEPDALDL--- 662 (1268)
Q Consensus 605 ----~~vVfILaTn~~e-------KL~pAL~SRcq--~I~F~pLs~--eEI~~iL~k----iakkEgi~Id~dALel--- 662 (1268)
.++.+|++|+..- .+.+.+.-|.. .+.++|+.. +||...+.. .+...++.++++++..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 3457888887652 24445666654 477777764 455554444 4444567799999887
Q ss_pred ----HHHHc-CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHh
Q 000818 663 ----IALNA-DGSLRDAETMLDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 663 ----LA~~S-~GDLRdAinlLEqLsll-----gk~IT~edV~eLV 697 (1268)
|..+. .||+|.+.+.+++++.. +..|+.+++..+.
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 66655 99999999999999864 3578888765443
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-09 Score=126.25 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=140.5
Q ss_pred CCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
..|++|+|+...++.+.+.+.. .+....+||+|++||||+.+|+++-..+.-... .-......+|+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~-------------~~S~r~~~pfv 282 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHD-------------ARQGKKSHPFV 282 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhccccc-------------ccCccCCCCeE
Confidence 3699999999999998888764 334467999999999999999999876311000 00112356899
Q ss_pred EEcCCCCcChHHHHHHHHHHHcC--------------CC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC--------
Q 000818 547 EVDGTNKKGLDRVRYILKHLSAG--------------LP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------- 603 (1268)
Q Consensus 547 EIDaSs~~gId~IReLIEea~~~--------------pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------- 603 (1268)
.+|++... + .+++..-+. ++ ...+....+||||++.|+...+..|+++|++.
T Consensus 283 ~inCaal~--e---~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~ 357 (538)
T PRK15424 283 AVNCGAIA--E---SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH 357 (538)
T ss_pred EeecccCC--h---hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCC
Confidence 99987632 1 222221111 00 01244568999999999999999999999863
Q ss_pred ---CCcEEEEEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHHHHHHH----hcCCCCCHHHH-----
Q 000818 604 ---PQRVVFIFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARLRKISA----EENLNVEPDAL----- 660 (1268)
Q Consensus 604 ---p~~vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL~kiak----kEgi~Id~dAL----- 660 (1268)
+.++.+|++|+..- .+.+.+.-|+.. +.++|+.. +||..++..++. ..+..++++++
T Consensus 358 ~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 437 (538)
T PRK15424 358 QPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQ 437 (538)
T ss_pred ceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHH
Confidence 23568888887652 244456666543 66666654 566655555444 35777888776
Q ss_pred --HHHHHHc-CCCHHHHHHHHHHHHHhC-----CccCHHHHH
Q 000818 661 --DLIALNA-DGSLRDAETMLDQLSLLG-----KRITSSLVN 694 (1268)
Q Consensus 661 --elLA~~S-~GDLRdAinlLEqLsllg-----k~IT~edV~ 694 (1268)
..|..+. .||+|.+.+.+++++.+. ..|+.+++.
T Consensus 438 a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 438 CETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 3444443 899999999999998752 357766654
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-09 Score=115.63 Aligned_cols=190 Identities=22% Similarity=0.272 Sum_probs=142.4
Q ss_pred cCCCCCccccCcHHHHHHHHH---HHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCC
Q 000818 465 YKPIFFDELIGQNIVVQSLVN---TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGK 541 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~---aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~ 541 (1268)
+-|..+.+|+|-+.....|.+ ....|.++.++||||.+||||+++++++..++.. .
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~---------------------~ 112 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------E 112 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh---------------------c
Confidence 446789999999988888765 3456888999999999999999999999988843 2
Q ss_pred CccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-HHHHHHHHHHc----CCCCcEEEEEEeCCC
Q 000818 542 SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-KTWLAFLKFLE----EPPQRVVFIFITTDI 616 (1268)
Q Consensus 542 s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-ea~naLLK~LE----epp~~vVfILaTn~~ 616 (1268)
+..++||+..+ +..+-.|++.+...+ .+=|||+|+.-.=.. ....+|..+|| ..|.+|+|..++|.-
T Consensus 113 glrLVEV~k~d---l~~Lp~l~~~Lr~~~-----~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 113 GLRLVEVDKED---LATLPDLVELLRARP-----EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred CCeEEEEcHHH---HhhHHHHHHHHhcCC-----ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 55799998766 456677777777554 344889998755433 34556666665 567787777777766
Q ss_pred CCcch----------------------hhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHcC
Q 000818 617 DNVPR----------------------SIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPD-----ALDLIALNAD 668 (1268)
Q Consensus 617 eKL~p----------------------AL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~d-----ALelLA~~S~ 668 (1268)
+-|+. .+-.|+.. +.|.+.+.++...++...++..++.++++ |++......+
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 54332 23346644 89999999999999999999999999775 4455555667
Q ss_pred CCHHHHHHHHHHHHH
Q 000818 669 GSLRDAETMLDQLSL 683 (1268)
Q Consensus 669 GDLRdAinlLEqLsl 683 (1268)
.+-|.|.+.++.++-
T Consensus 265 RSGR~A~QF~~~~~g 279 (287)
T COG2607 265 RSGRVAWQFIRDLAG 279 (287)
T ss_pred CccHhHHHHHHHHHh
Confidence 789999998887753
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.5e-10 Score=121.39 Aligned_cols=175 Identities=21% Similarity=0.200 Sum_probs=116.9
Q ss_pred CCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 000818 468 IFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~ 535 (1268)
..+.||-|-+..++.|.++|- .-+++..+|+|||||||||.+||+.|...+.....-.
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA---------- 237 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA---------- 237 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc----------
Confidence 368899999999999998884 3466789999999999999999999988753221110
Q ss_pred ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHHHH---HHHHHc
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTWLA---FLKFLE 601 (1268)
Q Consensus 536 ~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~na---LLK~LE 601 (1268)
++.++.+--. .|..-+|+.+.-+.... ..||||||+|.+.. +.+.. ||..|+
T Consensus 238 ------gPQLVQMfIG--dGAkLVRDAFaLAKEka------P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 238 ------GPQLVQMFIG--DGAKLVRDAFALAKEKA------PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred ------chHHHhhhhc--chHHHHHHHHHHhhccC------CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 1111111100 12344566665555433 34999999998853 22333 444455
Q ss_pred C--CCCcEEEEEEeCCCCCcchhhhcce--e-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Q 000818 602 E--PPQRVVFIFITTDIDNVPRSIQSRC--Q-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNA 667 (1268)
Q Consensus 602 e--pp~~vVfILaTn~~eKL~pAL~SRc--q-~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S 667 (1268)
. +...+.+|.+||..+-|+|+|++-+ . .|.|+-|..+....+|+-...+.++.- +--.+.|++.+
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~-DvNfeELaRsT 373 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD-DVNFEELARST 373 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC-CCCHHHHhhcc
Confidence 3 3467899999999999999998744 3 399998888877777777666665432 22244555555
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=123.61 Aligned_cols=203 Identities=14% Similarity=0.169 Sum_probs=138.4
Q ss_pred CCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 469 FFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
.|++++|....++.+.+.+.. .+....+||+|++||||+++|+++...-. .....|+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~---------------------r~~~pfv~ 62 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS---------------------RWQGPFIS 62 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC---------------------ccCCCeEE
Confidence 578899999888888777654 23345689999999999999999964321 12457888
Q ss_pred EcCCCCcChHHHHH-HHHHHHc---------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------Cc
Q 000818 548 VDGTNKKGLDRVRY-ILKHLSA---------GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QR 606 (1268)
Q Consensus 548 IDaSs~~gId~IRe-LIEea~~---------~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~ 606 (1268)
+|++... .+.+.. ++..... ......+...++||||++.|+...+..|+.+|++.. .+
T Consensus 63 v~c~~~~-~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 63 LNCAALN-ENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred EeCCCCC-HHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 8887632 122211 2111000 000123455689999999999999999999997642 25
Q ss_pred EEEEEEeCCC-------CCcchhhhccee--EEEecCCCH--HHHHHHHHHH----HHhcC----CCCCHHHHHHHHHHc
Q 000818 607 VVFIFITTDI-------DNVPRSIQSRCQ--KYLFNKIKD--GDIVARLRKI----SAEEN----LNVEPDALDLIALNA 667 (1268)
Q Consensus 607 vVfILaTn~~-------eKL~pAL~SRcq--~I~F~pLs~--eEI~~iL~ki----akkEg----i~Id~dALelLA~~S 667 (1268)
+.||++++.. ..+.+.|..|+. .|.++|+.. +||..++..+ +.+.+ ..++++++..|..+.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~ 221 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR 221 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC
Confidence 7888887654 245677888874 477777754 4555544443 44444 358999999999877
Q ss_pred -CCCHHHHHHHHHHHHHh--CCccCHHHH
Q 000818 668 -DGSLRDAETMLDQLSLL--GKRITSSLV 693 (1268)
Q Consensus 668 -~GDLRdAinlLEqLsll--gk~IT~edV 693 (1268)
.||+|.+.+.++.++.. +..|+.+++
T Consensus 222 WPGNvrEL~~vl~~a~~~~~~~~~~~~~l 250 (326)
T PRK11608 222 WPGNIRELKNVVERSVYRHGTSEYPLDNI 250 (326)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCCchhhc
Confidence 99999999999998765 335655443
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-09 Score=129.60 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=142.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
....|++++|....++.+...++. ......+||+|++||||+.+|+++...-. .....
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~---------------------r~~~p 257 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP---------------------RGKKP 257 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC---------------------CCCCC
Confidence 356899999999888877776653 34456689999999999999999854421 12357
Q ss_pred EEEEcCCCCcChHHHH-HHHHHHHc--------CCCCC-CCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------
Q 000818 545 FMEVDGTNKKGLDRVR-YILKHLSA--------GLPSA-SPRFKVFVIDECHLLPSKTWLAFLKFLEEP----------- 603 (1268)
Q Consensus 545 fIEIDaSs~~gId~IR-eLIEea~~--------~pp~~-~g~~KVIIIDEaD~LS~ea~naLLK~LEep----------- 603 (1268)
|+.+|++... -+.+. +++..... ....+ .+...+|||||++.|+...+..|+++|++.
T Consensus 258 fv~inca~~~-~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 336 (520)
T PRK10820 258 FLALNCASIP-DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 336 (520)
T ss_pred eEEeccccCC-HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcce
Confidence 8888887632 11111 11111100 00001 244568999999999999999999999863
Q ss_pred CCcEEEEEEeCCCC-------Ccchhhhccee--EEEecCCCH--HHHHHH----HHHHHHhcCC---CCCHHHHHHHHH
Q 000818 604 PQRVVFIFITTDID-------NVPRSIQSRCQ--KYLFNKIKD--GDIVAR----LRKISAEENL---NVEPDALDLIAL 665 (1268)
Q Consensus 604 p~~vVfILaTn~~e-------KL~pAL~SRcq--~I~F~pLs~--eEI~~i----L~kiakkEgi---~Id~dALelLA~ 665 (1268)
+.++.||++|+..- .+.+.+..|.. .+.++|+.. +++... |.+.+.+.|. .++++++++|..
T Consensus 337 ~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~ 416 (520)
T PRK10820 337 HVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 416 (520)
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc
Confidence 23567888876652 35566778854 477777764 455543 4445555553 689999999999
Q ss_pred H-cCCCHHHHHHHHHHHHHh--CCccCHHHH
Q 000818 666 N-ADGSLRDAETMLDQLSLL--GKRITSSLV 693 (1268)
Q Consensus 666 ~-S~GDLRdAinlLEqLsll--gk~IT~edV 693 (1268)
+ ..||+|.+.+.|+++... +..|+.+++
T Consensus 417 y~WPGNvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 417 YGWPGNVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 8 599999999999999765 557888875
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-10 Score=121.34 Aligned_cols=174 Identities=18% Similarity=0.237 Sum_probs=121.0
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHc------------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTISR------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIks------------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~ 532 (1268)
-...++.|+-|-.+.++.|.+.+.. -.++..+|+|||||||||.+||++|+..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt--------------- 235 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT--------------- 235 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---------------
Confidence 3356899999989999888887752 3456789999999999999999998775
Q ss_pred cccccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH-----------HHHHH
Q 000818 533 ECNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS-----------KTWLA 595 (1268)
Q Consensus 533 sC~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~-----------ea~na 595 (1268)
..-||.+=+++. .|..-+|+|++-++.. ...+||+||+|.+.. +.+..
T Consensus 236 ---------dacfirvigselvqkyvgegarmvrelf~martk------kaciiffdeidaiggarfddg~ggdnevqrt 300 (435)
T KOG0729|consen 236 ---------DACFIRVIGSELVQKYVGEGARMVRELFEMARTK------KACIIFFDEIDAIGGARFDDGAGGDNEVQRT 300 (435)
T ss_pred ---------CceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc------ceEEEEeeccccccCccccCCCCCcHHHHHH
Confidence 345666555431 1334567777776543 345899999998852 33444
Q ss_pred HHHHH---c--CCCCcEEEEEEeCCCCCcchhhhcce--e-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHH
Q 000818 596 FLKFL---E--EPPQRVVFIFITTDIDNVPRSIQSRC--Q-KYLFNKIKDGDIVARLRKISAEENLNVEPD-ALDLIALN 666 (1268)
Q Consensus 596 LLK~L---E--epp~~vVfILaTn~~eKL~pAL~SRc--q-~I~F~pLs~eEI~~iL~kiakkEgi~Id~d-ALelLA~~ 666 (1268)
+|.++ + +|..++.++++||.++.|+|+|++-. . .++|..++.+-...+++-.++... ++.+ -.++|++.
T Consensus 301 mleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--verdir~ellarl 378 (435)
T KOG0729|consen 301 MLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--VERDIRFELLARL 378 (435)
T ss_pred HHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--cccchhHHHHHhh
Confidence 44444 3 45678999999999999999999854 3 389988887766666654444333 3333 24667776
Q ss_pred cCCC
Q 000818 667 ADGS 670 (1268)
Q Consensus 667 S~GD 670 (1268)
+.++
T Consensus 379 cpns 382 (435)
T KOG0729|consen 379 CPNS 382 (435)
T ss_pred CCCC
Confidence 6443
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=127.80 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=142.0
Q ss_pred hcCCCCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 464 KYKPIFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 464 KYRP~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
-+...+|++|||....+..+++.++. .+....+|+.|+.||||..+|+++-+.- .+..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S---------------------~R~~ 296 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLS---------------------PRAN 296 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcC---------------------cccC
Confidence 34455899999999888877777664 3445689999999999999999985432 2346
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHc--CCCCC-------------CCCcEEEEEeCCCCCCHHHHHHHHHHHcCC----
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSA--GLPSA-------------SPRFKVFVIDECHLLPSKTWLAFLKFLEEP---- 603 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~--~pp~~-------------~g~~KVIIIDEaD~LS~ea~naLLK~LEep---- 603 (1268)
.+|+.||++... + .|+|.--+ ....| .++...+|+||+..|+...|..||++|++.
T Consensus 297 ~PFIaiNCaAiP--e---~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 297 GPFIAINCAAIP--E---TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred CCeEEEecccCC--H---HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEe
Confidence 689999987621 1 34433221 11111 134458999999999999999999999863
Q ss_pred -------CCcEEEEEEeCCCC-------CcchhhhcceeE--EEecCCC--HHHHHHHH----HHHHHhcCC---CCCHH
Q 000818 604 -------PQRVVFIFITTDID-------NVPRSIQSRCQK--YLFNKIK--DGDIVARL----RKISAEENL---NVEPD 658 (1268)
Q Consensus 604 -------p~~vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs--~eEI~~iL----~kiakkEgi---~Id~d 658 (1268)
+.++++|.|||..- .+-..|.=|..+ +..+|+. .+||.... .++....+. .|+++
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 46899999998762 244455556665 4444443 24444443 333444432 38899
Q ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHh---CCccCHHHHH
Q 000818 659 ALDLIALNA-DGSLRDAETMLDQLSLL---GKRITSSLVN 694 (1268)
Q Consensus 659 ALelLA~~S-~GDLRdAinlLEqLsll---gk~IT~edV~ 694 (1268)
++..|.++. .||+|.+.|+++.+..+ ...|+.++.-
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 999998877 99999999999999864 3456555543
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=104.87 Aligned_cols=137 Identities=23% Similarity=0.257 Sum_probs=92.8
Q ss_pred cCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC
Q 000818 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK 553 (1268)
Q Consensus 474 VGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~ 553 (1268)
+|++.++..+...+... ..+.++|+||+|+|||++++.+++.+.. ....++.++....
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~~---------------------~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELFR---------------------PGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhhc---------------------CCCCeEEEehhhh
Confidence 36778888888887763 2467999999999999999999999831 1345666665442
Q ss_pred cChHHHHHHHH----HHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC------CCcEEEEEEeCCCC--Ccch
Q 000818 554 KGLDRVRYILK----HLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP------PQRVVFIFITTDID--NVPR 621 (1268)
Q Consensus 554 ~gId~IReLIE----ea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep------p~~vVfILaTn~~e--KL~p 621 (1268)
........... ...... .......++||||++.+.......++..++.. ...+.+|++++... .+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 59 LEGLVVAELFGHFLVRLLFEL-AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHHHHHhhhhhHhHHHHh-hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 21111111111 000000 12345679999999999777777888877764 35788888888776 7888
Q ss_pred hhhcce-eEEEec
Q 000818 622 SIQSRC-QKYLFN 633 (1268)
Q Consensus 622 AL~SRc-q~I~F~ 633 (1268)
.+.+|+ .++.|.
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 999999 556654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-10 Score=142.54 Aligned_cols=201 Identities=18% Similarity=0.242 Sum_probs=156.5
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcC------------C--CCC-eEEEEcCCCchHHHHHHHHHHHhhcccC
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRG------------R--IAP-VYLFQGPRGTGKTSTAKIFSAALNCVAT 522 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksg------------R--i~~-ayLL~GPpGTGKTSLARaLAkaLnce~~ 522 (1268)
++.|.++|+|....+++|.......+.+|+..- - ... +++++||+|+|||+.+.+.|+.+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 678999999999999999988888888888643 0 112 46999999999999999999998
Q ss_pred CCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCC------------CCCCCCcEEEEEeCCCCCCH
Q 000818 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL------------PSASPRFKVFVIDECHLLPS 590 (1268)
Q Consensus 523 e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~p------------p~~~g~~KVIIIDEaD~LS~ 590 (1268)
+++++|+|+...++--.+.+.+-.+...- ......+-|||+||+|.+..
T Consensus 382 -------------------g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~ 442 (871)
T KOG1968|consen 382 -------------------GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG 442 (871)
T ss_pred -------------------ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc
Confidence 67899999987654333333332221111 01123344999999999987
Q ss_pred ---HHHHHHHHHHcCCCCcEEEEEEeCCCCC-cchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 000818 591 ---KTWLAFLKFLEEPPQRVVFIFITTDIDN-VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666 (1268)
Q Consensus 591 ---ea~naLLK~LEepp~~vVfILaTn~~eK-L~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~ 666 (1268)
..+.+|-.+++.- ..-+|++||+..- ...++.+-|..++|..|+...+..+|..+|..+++.|+++.++.+...
T Consensus 443 ~dRg~v~~l~~l~~ks--~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~ 520 (871)
T KOG1968|consen 443 EDRGGVSKLSSLCKKS--SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL 520 (871)
T ss_pred hhhhhHHHHHHHHHhc--cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh
Confidence 3467777777743 4557888887764 344777778889999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 000818 667 ADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 667 S~GDLRdAinlLEqLsll 684 (1268)
++||+|.+++.|+.....
T Consensus 521 ~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 521 SGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred cccCHHHHHHHHhhhhcc
Confidence 999999999999987443
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=126.59 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=81.0
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHcCC----------CCcEEEEEEeC----CCCCcchhhhcceeE
Q 000818 576 RFKVFVIDECHLLPS------------KTWLAFLKFLEEP----------PQRVVFIFITT----DIDNVPRSIQSRCQK 629 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~------------ea~naLLK~LEep----------p~~vVfILaTn----~~eKL~pAL~SRcq~ 629 (1268)
...||||||+|++.. ..|.+||++||.. -.++.||++.. .+..|.|.+.-|+.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 456999999999852 3589999999863 14666776542 345789999999966
Q ss_pred -EEecCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 000818 630 -YLFNKIKDGDIVARLRK-----------ISAEENL--NVEPDALDLIALNA--------DGSLRDAETMLDQLS 682 (1268)
Q Consensus 630 -I~F~pLs~eEI~~iL~k-----------iakkEgi--~Id~dALelLA~~S--------~GDLRdAinlLEqLs 682 (1268)
+.+.+++.+++..+|.. .+..+|+ .++++|+..||+.+ +-..|.+...++++.
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 89999999999998833 2344555 57899999999976 335777777888774
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=125.05 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCcEEEEEeCCCCCCH------------HHHHHHHHHHcCC----------CCcEEEEEEeC----CCCCcchhhhccee
Q 000818 575 PRFKVFVIDECHLLPS------------KTWLAFLKFLEEP----------PQRVVFIFITT----DIDNVPRSIQSRCQ 628 (1268)
Q Consensus 575 g~~KVIIIDEaD~LS~------------ea~naLLK~LEep----------p~~vVfILaTn----~~eKL~pAL~SRcq 628 (1268)
..+.||||||+|++.. ..|.+||++||.. -.++.||++.. .+..|.|.+.-|+-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 3566999999999852 2589999999863 14677776543 34578999999996
Q ss_pred E-EEecCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 000818 629 K-YLFNKIKDGDIVARLRK-----------ISAEENL--NVEPDALDLIALNA--------DGSLRDAETMLDQLS 682 (1268)
Q Consensus 629 ~-I~F~pLs~eEI~~iL~k-----------iakkEgi--~Id~dALelLA~~S--------~GDLRdAinlLEqLs 682 (1268)
+ +.+.+++.+++..+|.. .+..+|+ .++++|+..||+.+ +-..|.+...++++.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 6 99999999999998822 2344554 57999999999976 445777777888774
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=134.68 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=136.1
Q ss_pred CCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
-..|++|-|-++++..|++.+. .-.++..+||+||||||||..|+++|.++..... -
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-----------k 329 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-----------K 329 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-----------c
Confidence 4689999999999999998775 1334567999999999999999999988632111 0
Q ss_pred cccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHHcCC
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-----------TWLAFLKFLEEP 603 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e-----------a~naLLK~LEep 603 (1268)
..|+...+.+..-..... .-.+++.++++++...|. |||+||++.|.+. ....||.+|+..
T Consensus 330 isffmrkgaD~lskwvgE--aERqlrllFeeA~k~qPS------IIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl 401 (1080)
T KOG0732|consen 330 ISFFMRKGADCLSKWVGE--AERQLRLLFEEAQKTQPS------IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL 401 (1080)
T ss_pred cchhhhcCchhhccccCc--HHHHHHHHHHHHhccCce------EEeccccccccccccchHHHhhhhHHHHHHHhccCC
Confidence 122233333332221111 125788999998865543 9999999987531 245677777643
Q ss_pred --CCcEEEEEEeCCCCCcchhhhcce--eE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHH
Q 000818 604 --PQRVVFIFITTDIDNVPRSIQSRC--QK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRD 673 (1268)
Q Consensus 604 --p~~vVfILaTn~~eKL~pAL~SRc--q~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRd 673 (1268)
...+++|.+||+++.++++++++. .+ |.|.-++.++...+|.-.-.+..-.+....+..||+.+-|..+.
T Consensus 402 dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 402 DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGA 476 (1080)
T ss_pred CCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchH
Confidence 357999999999999999998855 33 88988888888888877666667778899999999988665443
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-09 Score=125.62 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=135.9
Q ss_pred CCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 469 FFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
.+.+++|+...++.+.+.+.. ......+||+|++||||+.+|+++..... .....|+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~---------------------r~~~p~v~ 243 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP---------------------RADKPLVY 243 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC---------------------cCCCCeEE
Confidence 688999999999888887765 33346789999999999999999976641 12457888
Q ss_pred EcCCCCcChHHHH-HHHHHHHc---C-----C-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------Cc
Q 000818 548 VDGTNKKGLDRVR-YILKHLSA---G-----L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QR 606 (1268)
Q Consensus 548 IDaSs~~gId~IR-eLIEea~~---~-----p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~ 606 (1268)
+|++.... ..+. +++..... . . ....+...++||||++.|+...+..|+++|++.. .+
T Consensus 244 v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 322 (509)
T PRK05022 244 LNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVD 322 (509)
T ss_pred EEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecc
Confidence 88775321 1111 11111000 0 0 0112445689999999999999999999998642 36
Q ss_pred EEEEEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHHH----HHHHhcC---CCCCHHHHHHHHHHc-
Q 000818 607 VVFIFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARLR----KISAEEN---LNVEPDALDLIALNA- 667 (1268)
Q Consensus 607 vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL~----kiakkEg---i~Id~dALelLA~~S- 667 (1268)
+.+|++|+..- .+...+..|... |.++|+.. +||..++. +.+.+.+ +.++++|++.|..+.
T Consensus 323 ~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~W 402 (509)
T PRK05022 323 VRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDW 402 (509)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 78888887652 366677777654 66666653 45554443 3344433 569999999999977
Q ss_pred CCCHHHHHHHHHHHHHh
Q 000818 668 DGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 668 ~GDLRdAinlLEqLsll 684 (1268)
.||+|.+.+.++.++..
T Consensus 403 PGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 403 PGNVRELEHVISRAALL 419 (509)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 99999999999998775
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=121.65 Aligned_cols=200 Identities=13% Similarity=0.151 Sum_probs=120.0
Q ss_pred ccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc-
Q 000818 471 DELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD- 549 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID- 549 (1268)
..|+|++++++.+..++..+. ++||+||||||||++|++|++.+.... .|..+.
T Consensus 20 ~~i~gre~vI~lll~aalag~---hVLL~GpPGTGKT~LAraLa~~~~~~~----------------------~F~~~~~ 74 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNAR----------------------AFEYLMT 74 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC---CEEEECCCChhHHHHHHHHHHHhcccC----------------------cceeeee
Confidence 457899999999999888764 589999999999999999999872100 111111
Q ss_pred ----CCCCcChHHHHHHHH--HH-HcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC---------CcEEE-EEE
Q 000818 550 ----GTNKKGLDRVRYILK--HL-SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP---------QRVVF-IFI 612 (1268)
Q Consensus 550 ----aSs~~gId~IReLIE--ea-~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp---------~~vVf-ILa 612 (1268)
+++..|...+..+.+ .+ .....+ .....|+|+||++.+++..+++||..|++.. -...| |++
T Consensus 75 ~fttp~DLfG~l~i~~~~~~g~f~r~~~G~-L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 75 RFSTPEEVFGPLSIQALKDEGRYQRLTSGY-LPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred eecCcHHhcCcHHHhhhhhcCchhhhcCCc-cccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 111112111222211 11 011110 1123399999999999999999999996531 12334 445
Q ss_pred eCCCC---CcchhhhcceeE-EEecCCC-HHHHHHHHHHHHH-----------------------hcCCCCCHHHHHHHH
Q 000818 613 TTDID---NVPRSIQSRCQK-YLFNKIK-DGDIVARLRKISA-----------------------EENLNVEPDALDLIA 664 (1268)
Q Consensus 613 Tn~~e---KL~pAL~SRcq~-I~F~pLs-~eEI~~iL~kiak-----------------------kEgi~Id~dALelLA 664 (1268)
||..+ ...+++..|+.+ +.++++. .++...+|..... -..+.+++..+++|.
T Consensus 154 TN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~ 233 (498)
T PRK13531 154 SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIF 233 (498)
T ss_pred CCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHH
Confidence 54332 244589999964 7777786 3454566643211 124567777777776
Q ss_pred HHcC----------CCHHHHHHHHHHH---HHh-C-CccCHHHHHHHh
Q 000818 665 LNAD----------GSLRDAETMLDQL---SLL-G-KRITSSLVNELV 697 (1268)
Q Consensus 665 ~~S~----------GDLRdAinlLEqL---sll-g-k~IT~edV~eLV 697 (1268)
.... -+.|..+.++.-+ +++ | ..|+.+||. ++
T Consensus 234 ~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll 280 (498)
T PRK13531 234 QLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LL 280 (498)
T ss_pred HHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-Hh
Confidence 6541 3566665554433 333 3 367777776 44
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=124.08 Aligned_cols=184 Identities=17% Similarity=0.201 Sum_probs=135.9
Q ss_pred CCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
|.. +++.|-...+..+...+. .-+++..+|+|||||+|||.+++++|++..
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~---------------- 243 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG---------------- 243 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----------------
Confidence 444 566666666665555543 245667899999999999999999999973
Q ss_pred cccccCCCccEEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH----------HHHHHHHH
Q 000818 535 NDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS----------KTWLAFLK 598 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~----------ea~naLLK 598 (1268)
..++.+++.+. ..-..+|..++++..... .-++||||++.+.+ .....|+.
T Consensus 244 --------a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~-----psii~IdEld~l~p~r~~~~~~e~Rv~sqllt 310 (693)
T KOG0730|consen 244 --------AFLFLINGPELISKFPGETESNLRKAFAEALKFQV-----PSIIFIDELDALCPKREGADDVESRVVSQLLT 310 (693)
T ss_pred --------ceeEecccHHHHHhcccchHHHHHHHHHHHhccCC-----CeeEeHHhHhhhCCcccccchHHHHHHHHHHH
Confidence 35566665431 123567888888765431 44999999999974 23567888
Q ss_pred HHcCCC--CcEEEEEEeCCCCCcchhhhc-ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHH-H
Q 000818 599 FLEEPP--QRVVFIFITTDIDNVPRSIQS-RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLR-D 673 (1268)
Q Consensus 599 ~LEepp--~~vVfILaTn~~eKL~pAL~S-Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLR-d 673 (1268)
+++... ..+++|.+|++++.|.+++++ |+.. +.+.-|+..+...+|+.++++.+.. ++..+..++..+.|-.. +
T Consensus 311 L~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaD 389 (693)
T KOG0730|consen 311 LLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGAD 389 (693)
T ss_pred HHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHH
Confidence 887654 788889999999999999997 7755 8888888899999999999888876 67888899998888653 3
Q ss_pred HHHHHHHH
Q 000818 674 AETMLDQL 681 (1268)
Q Consensus 674 AinlLEqL 681 (1268)
+..++..+
T Consensus 390 L~~l~~ea 397 (693)
T KOG0730|consen 390 LAALCREA 397 (693)
T ss_pred HHHHHHHH
Confidence 33444333
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.9e-09 Score=109.99 Aligned_cols=192 Identities=17% Similarity=0.238 Sum_probs=112.6
Q ss_pred ccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc-------------
Q 000818 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS------------- 539 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s------------- 539 (1268)
++|++..++.|.+++..+. .+.++++||+|+|||++++.+...+..... .+.++..+.....
T Consensus 1 F~gR~~el~~l~~~l~~~~-~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~----~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-SQHILLYGPRGSGKTSLLKEFINELKEKGY----KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT--EE----CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-CcEEEEEcCCcCCHHHHHHHHHHHhhhcCC----cEEEEecccchhhhHHHHHHHHHHHH
Confidence 4799999999999998764 478999999999999999999998832211 0101100000000
Q ss_pred ----------CCCccEEEEcC-CCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC------HHHHHHHHHHHcC
Q 000818 540 ----------GKSRNFMEVDG-TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP------SKTWLAFLKFLEE 602 (1268)
Q Consensus 540 ----------G~s~dfIEIDa-Ss~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS------~ea~naLLK~LEe 602 (1268)
-....+..+.. ........+..+++.+... +..-||||||++.+. ......|..+++.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-----GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-----HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-----CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 00001111111 0111234456666666542 223699999999988 3445677777765
Q ss_pred --CCCcEEEEEEeCCCC------CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHH
Q 000818 603 --PPQRVVFIFITTDID------NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNV--EPDALDLIALNADGSLR 672 (1268)
Q Consensus 603 --pp~~vVfILaTn~~e------KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~I--d~dALelLA~~S~GDLR 672 (1268)
...++.+|++++... .-..++..|+..+.+.+++.+++.+++...+.+. +.+ ++++++.++..++|.++
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HH
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHH
Confidence 234677777766532 1234577888889999999999999999988777 655 99999999999999998
Q ss_pred HHH
Q 000818 673 DAE 675 (1268)
Q Consensus 673 dAi 675 (1268)
.+.
T Consensus 230 ~l~ 232 (234)
T PF01637_consen 230 YLQ 232 (234)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=126.54 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=133.9
Q ss_pred CCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
..|++++|+...++.+.+.+.. ......+||+|++|||||.+|++|..... .....|+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~---------------------r~~~~~v 431 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG---------------------RNNRRMV 431 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC---------------------CCCCCeE
Confidence 5799999999999888777663 23345799999999999999999976541 1134667
Q ss_pred EEcCCCCcChHHHH-HHHHHHHcC--------C-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CC
Q 000818 547 EVDGTNKKGLDRVR-YILKHLSAG--------L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQ 605 (1268)
Q Consensus 547 EIDaSs~~gId~IR-eLIEea~~~--------p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~ 605 (1268)
.+|++... .+.+. .++...... . ........++||||++.|+...+..|+.+|++. +.
T Consensus 432 ~i~c~~~~-~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 510 (686)
T PRK15429 432 KMNCAAMP-AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 510 (686)
T ss_pred EEecccCC-hhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccc
Confidence 77765421 01111 111100000 0 000233468999999999999999999999764 24
Q ss_pred cEEEEEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHHH----HHHHhcCC---CCCHHHHHHHHHHc
Q 000818 606 RVVFIFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARLR----KISAEENL---NVEPDALDLIALNA 667 (1268)
Q Consensus 606 ~vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL~----kiakkEgi---~Id~dALelLA~~S 667 (1268)
++.+|++|+..- .+...+..|... |.++|+.. +||...+. +++.+.+. .++++|++.|..+.
T Consensus 511 ~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~ 590 (686)
T PRK15429 511 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNME 590 (686)
T ss_pred eEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 678888887642 344556666544 66666653 55554444 44444443 47999999998876
Q ss_pred -CCCHHHHHHHHHHHHHh--CCccCH
Q 000818 668 -DGSLRDAETMLDQLSLL--GKRITS 690 (1268)
Q Consensus 668 -~GDLRdAinlLEqLsll--gk~IT~ 690 (1268)
.||+|.+.+.++.++.. +..|+.
T Consensus 591 WPGNvrEL~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 591 WPGNVRELENVIERAVLLTRGNVLQL 616 (686)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCcccc
Confidence 99999999999999865 335554
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-08 Score=109.76 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=100.1
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
.+.+-.....++|++.++..+..++..++ ++||.||||||||++|+.+|+.+ +
T Consensus 16 ~~~~~~~~~~~~g~~~~~~~~l~a~~~~~---~vll~G~PG~gKT~la~~lA~~l------------------------~ 68 (329)
T COG0714 16 GKIRSELEKVVVGDEEVIELALLALLAGG---HVLLEGPPGVGKTLLARALARAL------------------------G 68 (329)
T ss_pred HHHHhhcCCeeeccHHHHHHHHHHHHcCC---CEEEECCCCccHHHHHHHHHHHh------------------------C
Confidence 33333344458899999998888888775 48999999999999999999998 3
Q ss_pred ccEEEEcCCCCc------ChHHHHHH---HHHHHcCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC---------
Q 000818 543 RNFMEVDGTNKK------GLDRVRYI---LKHLSAGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--------- 603 (1268)
Q Consensus 543 ~dfIEIDaSs~~------gId~IReL---IEea~~~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep--------- 603 (1268)
.+|+.+...... |...+... ...+.+.+ |.+.....|+++||+.+..+..+++|+..|++.
T Consensus 69 ~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~ 148 (329)
T COG0714 69 LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTT 148 (329)
T ss_pred CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC
Confidence 566666655422 22222222 11111111 122222369999999999999999999999862
Q ss_pred --CCcEEEEEEeCCC------CCcchhhhcce-eEEEecCCCHHH
Q 000818 604 --PQRVVFIFITTDI------DNVPRSIQSRC-QKYLFNKIKDGD 639 (1268)
Q Consensus 604 --p~~vVfILaTn~~------eKL~pAL~SRc-q~I~F~pLs~eE 639 (1268)
...-.+|++|.++ ..++.+++.|| ..+.+..+...+
T Consensus 149 ~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 149 IRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred cCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchH
Confidence 0122344555332 35899999999 567777774443
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-08 Score=118.79 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=136.2
Q ss_pred ccCcHHHHHHHHHHHH----cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEE
Q 000818 473 LIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEV 548 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIk----sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEI 548 (1268)
|-+++.....|...+. ....+.++.+.|-||||||.+++.+.+.|.........| .+.|++|
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p--------------~f~yveI 463 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP--------------KFDYVEI 463 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC--------------CccEEEE
Confidence 3466666666665554 323345899999999999999999999886433322222 4688999
Q ss_pred cCCCCcChHHHHHH---------------HHHH--HcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHc---CCCCcEE
Q 000818 549 DGTNKKGLDRVRYI---------------LKHL--SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLE---EPPQRVV 608 (1268)
Q Consensus 549 DaSs~~gId~IReL---------------IEea--~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LE---epp~~vV 608 (1268)
|+-...+..++-.. ++.+ ++..+.......||+|||.|.|-...+..|..+++ .+...++
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceE
Confidence 98765544433221 1111 11111123455699999999998877777777776 3345677
Q ss_pred EEEEeCCCC---C-cchhhhcce--eEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc---CCCHHHHHHHHH
Q 000818 609 FIFITTDID---N-VPRSIQSRC--QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNA---DGSLRDAETMLD 679 (1268)
Q Consensus 609 fILaTn~~e---K-L~pAL~SRc--q~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S---~GDLRdAinlLE 679 (1268)
+|.++|..+ + |...+-||. .++.|.|++.+++..++...+... ..++.+|++++++.. .||.|.|+..++
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 777777654 2 333556675 569999999999999998877554 457899999998854 899999999999
Q ss_pred HHHHh
Q 000818 680 QLSLL 684 (1268)
Q Consensus 680 qLsll 684 (1268)
.++..
T Consensus 623 RA~Ei 627 (767)
T KOG1514|consen 623 RAAEI 627 (767)
T ss_pred HHHHH
Confidence 98654
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-08 Score=121.14 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHcCC---------------------CCcEEEEEEeCCC--CCcchhhhccee---
Q 000818 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEP---------------------PQRVVFIFITTDI--DNVPRSIQSRCQ--- 628 (1268)
Q Consensus 575 g~~KVIIIDEaD~LS~ea~naLLK~LEep---------------------p~~vVfILaTn~~--eKL~pAL~SRcq--- 628 (1268)
++..++||||++.|....|..|+++|++. |.++.+|++++.. ..+.+++++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 34569999999999999999999999642 2367778888754 478999999987
Q ss_pred E-EEecC---CCHHH---HHHHHHHHHHhcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHh-----
Q 000818 629 K-YLFNK---IKDGD---IVARLRKISAEEN--LNVEPDALDLIALNA----------DGSLRDAETMLDQLSLL----- 684 (1268)
Q Consensus 629 ~-I~F~p---Ls~eE---I~~iL~kiakkEg--i~Id~dALelLA~~S----------~GDLRdAinlLEqLsll----- 684 (1268)
+ +.|.. .+.+. +..++.+.+++.| ..++++|+..|++.+ ..+.|.+.+++..+...
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 3 45533 23333 4556666666663 358999999988643 23578888888776322
Q ss_pred CCccCHHHHHHHhc
Q 000818 685 GKRITSSLVNELVG 698 (1268)
Q Consensus 685 gk~IT~edV~eLVG 698 (1268)
...|+.++|.+++.
T Consensus 376 ~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 376 KVYVTAEHVLKAKK 389 (608)
T ss_pred CceecHHHHHHHHH
Confidence 24788888877653
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=118.96 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=138.7
Q ss_pred CCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 469 FFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
.+.+|||+..++..++..|.- .+-...+||+|+.||||..+||+|-+.- .....+|+.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S---------------------~R~~kPfV~ 279 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS---------------------PRRDKPFVK 279 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC---------------------cccCCCcee
Confidence 578999999999999888763 2334679999999999999999995442 234568888
Q ss_pred EcCCCCcChHHH--HHHHHHHHcC--------CCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CC
Q 000818 548 VDGTNKKGLDRV--RYILKHLSAG--------LPS-ASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQ 605 (1268)
Q Consensus 548 IDaSs~~gId~I--ReLIEea~~~--------pp~-~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~ 605 (1268)
+|++... +.+ -+|+-...-+ ... -.++...+|+|||..|+...|.+||++|++. .-
T Consensus 280 ~NCAAlP--esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 280 LNCAALP--ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred eeccccc--hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 8887531 111 1222221110 000 1245568999999999999999999999764 35
Q ss_pred cEEEEEEeCCCC-------CcchhhhcceeEEEe--cCCCH--HHH----HHHHHHHHHhcCC---CCCHHHHHHHHHHc
Q 000818 606 RVVFIFITTDID-------NVPRSIQSRCQKYLF--NKIKD--GDI----VARLRKISAEENL---NVEPDALDLIALNA 667 (1268)
Q Consensus 606 ~vVfILaTn~~e-------KL~pAL~SRcq~I~F--~pLs~--eEI----~~iL~kiakkEgi---~Id~dALelLA~~S 667 (1268)
+|.+|.+||..= ++-..|.-|..+|.+ +|+-+ +|| ..+++++..+.|. .++++|++.|..+.
T Consensus 358 DVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 358 DVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred EEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 789999998761 345566667666443 33321 222 2345555555554 68999999999876
Q ss_pred -CCCHHHHHHHHHHHHHhC-CccCHHH
Q 000818 668 -DGSLRDAETMLDQLSLLG-KRITSSL 692 (1268)
Q Consensus 668 -~GDLRdAinlLEqLsllg-k~IT~ed 692 (1268)
.||+|.++|.++.++++. +.++.++
T Consensus 438 wPGNVRELen~veRavlla~~~~~~~d 464 (550)
T COG3604 438 WPGNVRELENVVERAVLLAGRLTRRGD 464 (550)
T ss_pred CCCcHHHHHHHHHHHHHHhcccCCCcc
Confidence 999999999999998754 4455444
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-07 Score=108.33 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=105.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
|..=.+.+-.......+..++..++ .+||.||+|||||++++.||+.++. +++
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~~---~ilL~G~pGtGKTtla~~lA~~l~~------------------------~~~ 93 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYDR---RVMVQGYHGTGKSTHIEQIAARLNW------------------------PCV 93 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCC---cEEEEeCCCChHHHHHHHHHHHHCC------------------------CeE
Confidence 4444455666677777877876554 5899999999999999999999942 222
Q ss_pred EEcCCCC------cChHHH--HHH--HHHHHcCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcC-------------
Q 000818 547 EVDGTNK------KGLDRV--RYI--LKHLSAGLP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEE------------- 602 (1268)
Q Consensus 547 EIDaSs~------~gId~I--ReL--IEea~~~pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEe------------- 602 (1268)
.++.... .|...+ +.- ...+...+- .......++++||++...++.+++|..+||.
T Consensus 94 rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i 173 (327)
T TIGR01650 94 RVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVI 173 (327)
T ss_pred EEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEe
Confidence 2221111 000000 000 000000000 0012335799999999999999999998873
Q ss_pred -CCCcEEEEEEeCCCC------------CcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 000818 603 -PPQRVVFIFITTDID------------NVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666 (1268)
Q Consensus 603 -pp~~vVfILaTn~~e------------KL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~ 666 (1268)
+.+..++|.+.|... .++.+.+.|+.+ +.+..++.++-..+|...+....-..++..++++++.
T Consensus 174 ~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 174 RAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred cCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 123455666666532 368999999975 6899999988888887654221101134455555553
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=119.11 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=135.9
Q ss_pred CCCCccccCcHHHHHHHHHHHHcC-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksg-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
...|++|||.....+.+.+.|+.- .....+|++|++||||+.+|+.|. .+.... ...+|
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH-~~s~r~-------------------~~~PF 133 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIH-ALSARR-------------------AEAPF 133 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHH-Hhhhcc-------------------cCCCE
Confidence 446999999999998888888762 223478999999999999999998 331110 25688
Q ss_pred EEEcCCCCcChHHHHHHHHHHH---cCC-----C-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcC-----------CCC
Q 000818 546 MEVDGTNKKGLDRVRYILKHLS---AGL-----P-SASPRFKVFVIDECHLLPSKTWLAFLKFLEE-----------PPQ 605 (1268)
Q Consensus 546 IEIDaSs~~gId~IReLIEea~---~~p-----p-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEe-----------pp~ 605 (1268)
|.+|++....--..-+|+-... +.. . .-.++..++|+||++.|....+..|+++||+ .+.
T Consensus 134 I~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 134 IAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred EEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 9998876321111112222111 110 0 0134566999999999999999999999997 457
Q ss_pred cEEEEEEeCCC--CCcch--hhhcceeE--EEecCCCH--HHHHHHH----HHHHHhcCCCC---CHHHHHHHHHHc-CC
Q 000818 606 RVVFIFITTDI--DNVPR--SIQSRCQK--YLFNKIKD--GDIVARL----RKISAEENLNV---EPDALDLIALNA-DG 669 (1268)
Q Consensus 606 ~vVfILaTn~~--eKL~p--AL~SRcq~--I~F~pLs~--eEI~~iL----~kiakkEgi~I---d~dALelLA~~S-~G 669 (1268)
+|.+|++|+.. +.+.. ++..|+.. |.++++.. +||...+ ...+.+.+..+ .++++..|..+. .|
T Consensus 214 dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG 293 (403)
T COG1221 214 DVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG 293 (403)
T ss_pred CceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC
Confidence 89999999876 35666 77776644 66666653 4444444 44455555543 346777776654 99
Q ss_pred CHHHHHHHHHHHHHh
Q 000818 670 SLRDAETMLDQLSLL 684 (1268)
Q Consensus 670 DLRdAinlLEqLsll 684 (1268)
|+|.+.|.++.+++.
T Consensus 294 NirELkN~Ve~~~~~ 308 (403)
T COG1221 294 NIRELKNLVERAVAQ 308 (403)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998765
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-08 Score=116.84 Aligned_cols=201 Identities=21% Similarity=0.289 Sum_probs=137.9
Q ss_pred CCCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 467 PIFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
...|.+++|....++.+...+.. ......++|+|++||||+++|+.+..... .....|
T Consensus 135 ~~~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~---------------------~~~~~~ 193 (445)
T TIGR02915 135 GTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSD---------------------RKDKRF 193 (445)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCC---------------------cCCCCe
Confidence 34677899998888877777653 22235678999999999999999976531 123468
Q ss_pred EEEcCCCCcChHHHHHHHHHHHcC-------------CC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-------
Q 000818 546 MEVDGTNKKGLDRVRYILKHLSAG-------------LP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP------- 604 (1268)
Q Consensus 546 IEIDaSs~~gId~IReLIEea~~~-------------pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp------- 604 (1268)
+.++++... + .+++..-+. .. ...+...++||||++.|+...+..|+++|++..
T Consensus 194 v~v~c~~~~--~---~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 194 VAINCAAIP--E---NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred EEEECCCCC--h---HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCC
Confidence 888887632 1 222221111 00 112456789999999999999999999998642
Q ss_pred ----CcEEEEEEeCCC-------CCcchhhhcceeE--EEecCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHH
Q 000818 605 ----QRVVFIFITTDI-------DNVPRSIQSRCQK--YLFNKIKD--GDIVAR----LRKISAEEN---LNVEPDALDL 662 (1268)
Q Consensus 605 ----~~vVfILaTn~~-------eKL~pAL~SRcq~--I~F~pLs~--eEI~~i----L~kiakkEg---i~Id~dALel 662 (1268)
.++.+|++|+.. ..+.+.|..|+.. |.++|+.. ++|... |.+.+.+.+ ..+++++++.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 357888888765 2355566667644 56666643 344433 344444434 4689999999
Q ss_pred HHHHc-CCCHHHHHHHHHHHHHh--CCccCHHHH
Q 000818 663 IALNA-DGSLRDAETMLDQLSLL--GKRITSSLV 693 (1268)
Q Consensus 663 LA~~S-~GDLRdAinlLEqLsll--gk~IT~edV 693 (1268)
|..+. .||+|.+.+.+++++.. +..|+.+++
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMAEGNQITAEDL 382 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 99887 99999999999999875 456877764
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=118.54 Aligned_cols=215 Identities=19% Similarity=0.246 Sum_probs=140.7
Q ss_pred hchhhhhhcCCCCCccccCcHHHHHHHHHHHHc---CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 457 ~~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIks---gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s 533 (1268)
..+.+...++|.+ ++|.+..+..+.+++.. .+-+..+.+.|-||||||.+...+...+.+.... ||-..-.
T Consensus 139 ~~~~l~~t~~p~~---l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~---~~~v~in 212 (529)
T KOG2227|consen 139 RSESLLNTAPPGT---LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS---PVTVYIN 212 (529)
T ss_pred HHHHHHhcCCCCC---ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc---ceeEEEe
Confidence 4466777888854 58999999888888763 3345678899999999999999887777554331 2212122
Q ss_pred cc------ccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHc---CCC
Q 000818 534 CN------DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLE---EPP 604 (1268)
Q Consensus 534 C~------~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LE---epp 604 (1268)
|. +++.+..-.+...-.+...+.+-.+.+...+... ..--|+|+||+|.|....+..|..++| -|.
T Consensus 213 c~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~-----k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 213 CTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS-----KFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPN 287 (529)
T ss_pred eccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc-----cceEEEEechhhHHhhcccceeeeehhcccCCc
Confidence 22 1111111111100011111112122222222211 123488899999998666666655554 455
Q ss_pred CcEEEEEEeCCCC---Ccchhhhcce----eEEEecCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHc---CCCHHH
Q 000818 605 QRVVFIFITTDID---NVPRSIQSRC----QKYLFNKIKDGDIVARLRKISAEENLNV-EPDALDLIALNA---DGSLRD 673 (1268)
Q Consensus 605 ~~vVfILaTn~~e---KL~pAL~SRc----q~I~F~pLs~eEI~~iL~kiakkEgi~I-d~dALelLA~~S---~GDLRd 673 (1268)
.++++|+++|..+ ++++.|..|+ +.+.|.|++.++|..+|...+..+...+ -+.|++++|+.. .||+|.
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHH
Confidence 7888899998875 6888888866 5699999999999999999888875544 445888888855 899999
Q ss_pred HHHHHHHHH
Q 000818 674 AETMLDQLS 682 (1268)
Q Consensus 674 AinlLEqLs 682 (1268)
|+..+..+.
T Consensus 368 aLdv~R~ai 376 (529)
T KOG2227|consen 368 ALDVCRRAI 376 (529)
T ss_pred HHHHHHHHH
Confidence 999888654
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=115.23 Aligned_cols=179 Identities=18% Similarity=0.233 Sum_probs=115.2
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHH------------cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCC
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKP 527 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIk------------sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~P 527 (1268)
...+-.+-.+|+++-|--..+..|..-|. .-+++..++||||||+|||.+|+++|+.+
T Consensus 121 m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m---------- 190 (388)
T KOG0651|consen 121 MSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM---------- 190 (388)
T ss_pred hhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------
Confidence 34444555599999999999999988764 34667789999999999999999999998
Q ss_pred CCCcccccccccCCCccEEEEcCCCC----cC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-----------H
Q 000818 528 CGYCRECNDFISGKSRNFMEVDGTNK----KG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-----------S 590 (1268)
Q Consensus 528 Cg~C~sC~~i~sG~s~dfIEIDaSs~----~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-----------~ 590 (1268)
+.+|+.+-++.. .| ..-||+.+..+....+ .|+|+||+|... .
T Consensus 191 --------------g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p------ciifmdeiDAigGRr~se~Ts~dr 250 (388)
T KOG0651|consen 191 --------------GVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIP------CIIFMDEIDAIGGRRFSEGTSSDR 250 (388)
T ss_pred --------------CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc------eEEeehhhhhhccEEeccccchhH
Confidence 446666544321 11 2235565555554433 599999999863 1
Q ss_pred HHHHHHHHHHc---C--CCCcEEEEEEeCCCCCcchhhhcce--eE-EEecCCCHHHHHHHHHHHHH---hcCCCCCHHH
Q 000818 591 KTWLAFLKFLE---E--PPQRVVFIFITTDIDNVPRSIQSRC--QK-YLFNKIKDGDIVARLRKISA---EENLNVEPDA 659 (1268)
Q Consensus 591 ea~naLLK~LE---e--pp~~vVfILaTn~~eKL~pAL~SRc--q~-I~F~pLs~eEI~~iL~kiak---kEgi~Id~dA 659 (1268)
+.+..|..++. . ....|.+|++||+++.|+|+|++-. .+ |..+.+....-..+++-..+ ..| .|+.++
T Consensus 251 eiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G-eid~ea 329 (388)
T KOG0651|consen 251 EIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG-EIDDEA 329 (388)
T ss_pred HHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccc-cccHHH
Confidence 22334444443 2 2368999999999999999999844 44 44443333322222222111 112 466677
Q ss_pred HHHHHHHcCC
Q 000818 660 LDLIALNADG 669 (1268)
Q Consensus 660 LelLA~~S~G 669 (1268)
+-.+....+|
T Consensus 330 ivK~~d~f~g 339 (388)
T KOG0651|consen 330 ILKLVDGFNG 339 (388)
T ss_pred HHHHHhccCh
Confidence 6666665555
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=112.53 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=102.0
Q ss_pred CccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc-cCCCccEEEE
Q 000818 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI-SGKSRNFMEV 548 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~-sG~s~dfIEI 548 (1268)
++++++.+..++.+..++..+ .+++|+||||||||++|+.+|..+...... ..+ .+..+. .-...+|+.-
T Consensus 174 l~d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l~~~~~~--~~v----~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLLTGEKAP--QRV----NMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHhcCCccc--cee----eEEeecccccHHHHhcc
Confidence 788899999999999888865 468999999999999999999988432110 000 000010 0001111110
Q ss_pred cCCCCcCh----HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHcC---------------------
Q 000818 549 DGTNKKGL----DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-TWLAFLKFLEE--------------------- 602 (1268)
Q Consensus 549 DaSs~~gI----d~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e-a~naLLK~LEe--------------------- 602 (1268)
-.....+. .-+..++..+...+ ....||||||+++.... .+..|+.+||.
T Consensus 245 ~rP~~vgy~~~~G~f~~~~~~A~~~p----~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f 320 (459)
T PRK11331 245 YRPNGVGFRRKDGIFYNFCQQAKEQP----EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERF 320 (459)
T ss_pred cCCCCCCeEecCchHHHHHHHHHhcc----cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccc
Confidence 00000111 12345555554332 35679999999998754 46666666652
Q ss_pred -CCCcEEEEEEeCCCC----CcchhhhcceeEEEecCC-CHHHHHHHH
Q 000818 603 -PPQRVVFIFITTDID----NVPRSIQSRCQKYLFNKI-KDGDIVARL 644 (1268)
Q Consensus 603 -pp~~vVfILaTn~~e----KL~pAL~SRcq~I~F~pL-s~eEI~~iL 644 (1268)
.|.++.||.|.|..+ .+..|+++|+..+.+.+- +...+..++
T Consensus 321 ~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 321 YVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred cCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 256788888888876 488999999999888773 444555554
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-07 Score=107.33 Aligned_cols=205 Identities=17% Similarity=0.213 Sum_probs=131.6
Q ss_pred ccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc
Q 000818 471 DELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD 549 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID 549 (1268)
..++|....+..+...+.. ......++|+|++|+|||++|+++.+... .....|+.++
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~---------------------r~~~~f~~i~ 192 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASP---------------------RASKPFIAIN 192 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcC---------------------CCCCCeEEEe
Confidence 3577877666655554432 33345789999999999999999976531 1245788888
Q ss_pred CCCCcChHHHHH-HHHHHHcC--------C-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEE
Q 000818 550 GTNKKGLDRVRY-ILKHLSAG--------L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVV 608 (1268)
Q Consensus 550 aSs~~gId~IRe-LIEea~~~--------p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vV 608 (1268)
+.... .+.+.. ++...... . ........++||||++.|+...+..|+++|++.. .++.
T Consensus 193 c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 193 CGALP-EQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred CCCCC-HHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 77532 111111 11110000 0 0012345689999999999999999999998642 2568
Q ss_pred EEEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHH----HHHHHhcC---CCCCHHHHHHHHHHc-CC
Q 000818 609 FIFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARL----RKISAEEN---LNVEPDALDLIALNA-DG 669 (1268)
Q Consensus 609 fILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL----~kiakkEg---i~Id~dALelLA~~S-~G 669 (1268)
+|++|+..- .+.+.+..|... |.++|+.. ++|..++ .+.+...+ ..++++|++.|..+. .|
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~Wpg 351 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 888877541 233444445433 44555543 4554443 33333333 258999999999998 99
Q ss_pred CHHHHHHHHHHHHHh--CCccCHHHHHHHh
Q 000818 670 SLRDAETMLDQLSLL--GKRITSSLVNELV 697 (1268)
Q Consensus 670 DLRdAinlLEqLsll--gk~IT~edV~eLV 697 (1268)
|+|.+.+.|+.++.. +..|+.+++...+
T Consensus 352 NvreL~~~i~~~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 352 NVRQLVNVIEQCVALTSSPVISDALVEQAL 381 (444)
T ss_pred hHHHHHHHHHHHHHhCCCCccChhhhhhhh
Confidence 999999999998765 4578888775433
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-08 Score=113.64 Aligned_cols=203 Identities=14% Similarity=0.178 Sum_probs=126.7
Q ss_pred hcCCCCCc-cccCcHHHHHHHHHHHHc-----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcc-----------------
Q 000818 464 KYKPIFFD-ELIGQNIVVQSLVNTISR-----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCV----------------- 520 (1268)
Q Consensus 464 KYRP~tFd-DLVGQe~vv~tLk~aIks-----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce----------------- 520 (1268)
.+|-..|+ +++|+++++..|.++++. +.....++|+||||+|||++|++||+.+..-
T Consensus 43 ~~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~ 122 (361)
T smart00763 43 IKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEE 122 (361)
T ss_pred eeeccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCC
Confidence 46677899 999999999998888764 2123678999999999999999999999552
Q ss_pred --cCCC-----------------C-----CCCCCcccccccc----cCCC--ccEEEEcCCC------------CcChHH
Q 000818 521 --ATDQ-----------------T-----KPCGYCRECNDFI----SGKS--RNFMEVDGTN------------KKGLDR 558 (1268)
Q Consensus 521 --~~e~-----------------~-----~PCg~C~sC~~i~----sG~s--~dfIEIDaSs------------~~gId~ 558 (1268)
..++ + ..--.|+-|.... .|.- ..+..+..+. +.+..+
T Consensus 123 sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qd 202 (361)
T smart00763 123 SPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQD 202 (361)
T ss_pred CCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCccc
Confidence 1000 0 0111255554333 2221 1222222111 111223
Q ss_pred HHHHHHHHH--------cCC--------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CCcEEEEE
Q 000818 559 VRYILKHLS--------AGL--------PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQRVVFIF 611 (1268)
Q Consensus 559 IReLIEea~--------~~p--------p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~~vVfIL 611 (1268)
+..|+..+. ... ....+++.|+-|+|+.....+.++.||.++++. +.+.+||+
T Consensus 203 i~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia 282 (361)
T smart00763 203 ISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIA 282 (361)
T ss_pred HHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEE
Confidence 333332111 000 113467789999999999999999999999853 22355566
Q ss_pred EeCCCC-------CcchhhhcceeEEEecCCC-HHHHHHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 000818 612 ITTDID-------NVPRSIQSRCQKYLFNKIK-DGDIVARLRKISAEE---NLNVEPDALDLIALN 666 (1268)
Q Consensus 612 aTn~~e-------KL~pAL~SRcq~I~F~pLs-~eEI~~iL~kiakkE---gi~Id~dALelLA~~ 666 (1268)
++|..+ +...+++.||..+.++.+. ..+=+++.++.+... ++.+.+.+++.+|..
T Consensus 283 ~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 283 HSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred eCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 666552 5689999999988876554 344455666666543 566777777766653
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=108.92 Aligned_cols=122 Identities=13% Similarity=0.203 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC---------
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT--------- 551 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS--------- 551 (1268)
..+..++..+. .+||+||+|||||++|++||..++. +|+.++..
T Consensus 110 ~ri~r~l~~~~---PVLL~GppGtGKTtLA~aLA~~lg~------------------------pfv~In~l~d~~~L~G~ 162 (383)
T PHA02244 110 ADIAKIVNANI---PVFLKGGAGSGKNHIAEQIAEALDL------------------------DFYFMNAIMDEFELKGF 162 (383)
T ss_pred HHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHhCC------------------------CEEEEecChHHHhhccc
Confidence 34445555553 4789999999999999999999732 22222211
Q ss_pred -CCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcC-----------CCCcEEEEEEeCCC---
Q 000818 552 -NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE-----------PPQRVVFIFITTDI--- 616 (1268)
Q Consensus 552 -s~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEe-----------pp~~vVfILaTn~~--- 616 (1268)
...+.-.-..++..+ ....++||||++.+.++++..|...+++ .+.++.+|+++|..
T Consensus 163 i~~~g~~~dgpLl~A~--------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G 234 (383)
T PHA02244 163 IDANGKFHETPFYEAF--------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKG 234 (383)
T ss_pred ccccccccchHHHHHh--------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccC
Confidence 000000001233332 2345999999999999999999999863 23578888888863
Q ss_pred --------CCcchhhhcceeEEEecCCCH
Q 000818 617 --------DNVPRSIQSRCQKYLFNKIKD 637 (1268)
Q Consensus 617 --------eKL~pAL~SRcq~I~F~pLs~ 637 (1268)
..+.+++++|+..+.|..+..
T Consensus 235 ~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 235 ADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred cccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 357899999999999988764
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-08 Score=115.41 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=138.4
Q ss_pred CCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 469 FFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
.|.+++|....++.+...+.. ......+||+|++||||+++|+++..... .....|+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~---------------------~~~~~~i~ 194 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP---------------------RAKAPFIA 194 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCC---------------------CCCCCeEe
Confidence 477899998887777666653 22235689999999999999999876531 12457888
Q ss_pred EcCCCCcChHHHHH-HHHHHHcC--------C-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------Cc
Q 000818 548 VDGTNKKGLDRVRY-ILKHLSAG--------L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QR 606 (1268)
Q Consensus 548 IDaSs~~gId~IRe-LIEea~~~--------p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~ 606 (1268)
++++... -+.+.. ++...... . .........+||||++.|+...+..|+++|++.. .+
T Consensus 195 i~c~~~~-~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 273 (469)
T PRK10923 195 LNMAAIP-KDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVD 273 (469)
T ss_pred eeCCCCC-HHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEee
Confidence 8887631 111111 11110000 0 0012345589999999999999999999998642 34
Q ss_pred EEEEEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHHHHH----HHhcCC---CCCHHHHHHHHHHc-
Q 000818 607 VVFIFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARLRKI----SAEENL---NVEPDALDLIALNA- 667 (1268)
Q Consensus 607 vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL~ki----akkEgi---~Id~dALelLA~~S- 667 (1268)
+.||++|+..- .+.+.+..|+.. |.++|+.. +++..++..+ +.+.+. .++++|+..|..+.
T Consensus 274 ~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 353 (469)
T PRK10923 274 VRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 (469)
T ss_pred EEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 68888887541 456778888743 66666653 4555544444 333333 48999999999977
Q ss_pred CCCHHHHHHHHHHHHHh--CCccCHHHHH
Q 000818 668 DGSLRDAETMLDQLSLL--GKRITSSLVN 694 (1268)
Q Consensus 668 ~GDLRdAinlLEqLsll--gk~IT~edV~ 694 (1268)
.||+|.+.+.+++++.. +..|+.+++.
T Consensus 354 pgNv~eL~~~i~~~~~~~~~~~i~~~~l~ 382 (469)
T PRK10923 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLP 382 (469)
T ss_pred CChHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 99999999999999875 4578887764
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-09 Score=112.43 Aligned_cols=138 Identities=19% Similarity=0.213 Sum_probs=77.9
Q ss_pred CccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC-ccccc---ccccCCCccE
Q 000818 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY-CRECN---DFISGKSRNF 545 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~-C~sC~---~i~sG~s~df 545 (1268)
|.||+||+.+++.|.-++..+ |++||+||||||||++|+.+..-|-....++...... ...+. ........+|
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred hhhhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 899999999999999888864 7899999999999999999997763322111100000 00000 0000012223
Q ss_pred EEEcCCCCcChHHHHHHHHHHHc-CC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-------------CCcEEEE
Q 000818 546 MEVDGTNKKGLDRVRYILKHLSA-GL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------------PQRVVFI 610 (1268)
Q Consensus 546 IEIDaSs~~gId~IReLIEea~~-~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------------p~~vVfI 610 (1268)
...-.+. ....++..... .| -...+.+.|+||||+..|.....++|+..||+. |.++.||
T Consensus 79 r~phhs~-----s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv 153 (206)
T PF01078_consen 79 RAPHHSA-----SEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLV 153 (206)
T ss_dssp EEE-TT-------HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEE
T ss_pred ccCCCCc-----CHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEE
Confidence 2222111 12233322111 11 113467889999999999999999999999864 5667777
Q ss_pred EEeCC
Q 000818 611 FITTD 615 (1268)
Q Consensus 611 LaTn~ 615 (1268)
++.|-
T Consensus 154 ~a~NP 158 (206)
T PF01078_consen 154 AAMNP 158 (206)
T ss_dssp EEE-S
T ss_pred EEecc
Confidence 77663
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=117.20 Aligned_cols=223 Identities=19% Similarity=0.237 Sum_probs=139.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCC----CCCCCC-ccccccc---
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ----TKPCGY-CRECNDF--- 537 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~----~~PCg~-C~sC~~i--- 537 (1268)
.|..|++++||++++..|..++..++ .++|+||||+|||+++++|++.+.|..... .+|... -+....+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~~---~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~~~~~~~v~~~ 102 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQRR---HVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVPAG 102 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhCC---eEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcchHHHHHHHHHh
Confidence 37899999999999999999998874 699999999999999999999997753100 001000 0000000
Q ss_pred --------------------------------------------------------------------------ccCCCc
Q 000818 538 --------------------------------------------------------------------------ISGKSR 543 (1268)
Q Consensus 538 --------------------------------------------------------------------------~sG~s~ 543 (1268)
....+.
T Consensus 103 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~~~a 182 (637)
T PRK13765 103 KGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADKKTA 182 (637)
T ss_pred cCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCCCCC
Confidence 001122
Q ss_pred cEEEEcCCCCcChHHHHHHHHHHHcCC-----------------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC---
Q 000818 544 NFMEVDGTNKKGLDRVRYILKHLSAGL-----------------PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--- 603 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IReLIEea~~~p-----------------p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep--- 603 (1268)
+|+..+.+. ..+|+-.+.+.+ ....++..++||||++.|....|..|++.|++.
T Consensus 183 Pvi~~~~p~------~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~ 256 (637)
T PRK13765 183 PFVDATGAH------AGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFP 256 (637)
T ss_pred CEEEeCCCC------HHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEE
Confidence 333332222 122222222110 001345579999999999999999999999532
Q ss_pred ------------------CCcEEEEEEeCCC--CCcchhhhccee----EEEecC---CCHHHHHHHHHHHHHhc-----
Q 000818 604 ------------------PQRVVFIFITTDI--DNVPRSIQSRCQ----KYLFNK---IKDGDIVARLRKISAEE----- 651 (1268)
Q Consensus 604 ------------------p~~vVfILaTn~~--eKL~pAL~SRcq----~I~F~p---Ls~eEI~~iL~kiakkE----- 651 (1268)
|.++.+|++++.. ..+.+.+.+|+. .++|.. ...+.+..+++.+++..
T Consensus 257 i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~ 336 (637)
T PRK13765 257 ITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGK 336 (637)
T ss_pred ecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccC
Confidence 2356788888765 357889999985 256653 23455556666555432
Q ss_pred CCCCCHHHHHHHHHHc---CCC-------HHHHHHHHHHHHHh-----CCccCHHHHHHHh
Q 000818 652 NLNVEPDALDLIALNA---DGS-------LRDAETMLDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 652 gi~Id~dALelLA~~S---~GD-------LRdAinlLEqLsll-----gk~IT~edV~eLV 697 (1268)
-..++.+|+..|++.+ .|+ +|.+..++..+... ...|+.++|.+.+
T Consensus 337 l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 337 IPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHH
Confidence 2368999999988865 232 56666666665332 2356666665443
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-09 Score=111.32 Aligned_cols=105 Identities=24% Similarity=0.338 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCC
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~ 572 (1268)
...+||+||+|+|||.+|++||+.+.- +...+++.+|++....-+....++..+...++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~--------------------~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~ 62 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV--------------------GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG 62 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT---------------------SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc--------------------CCccchHHHhhhcccccchHHhhhhhhhhcccc
Confidence 357999999999999999999999941 224578888887655422221222221111110
Q ss_pred --CCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHcCC-----------CCcEEEEEEeCCCC
Q 000818 573 --ASPRFKVFVIDECHLLPS-----------KTWLAFLKFLEEP-----------PQRVVFIFITTDID 617 (1268)
Q Consensus 573 --~~g~~KVIIIDEaD~LS~-----------ea~naLLK~LEep-----------p~~vVfILaTn~~e 617 (1268)
......||+|||+|+..+ ..++.||++||+. -.+++||+++|-..
T Consensus 63 ~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 63 YVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred eeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 011223999999999999 9999999999854 25788899888654
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=103.50 Aligned_cols=200 Identities=17% Similarity=0.257 Sum_probs=133.8
Q ss_pred CCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 469 FFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
.+..++|....+..+...+.. ......+|++|++||||+++|+++..... .....|+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~---------------------~~~~~~~~ 199 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR---------------------RAKGPFIK 199 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC---------------------CCCCCeEE
Confidence 456788887777666665543 23335689999999999999999966431 12457888
Q ss_pred EcCCCCcChHHHHHHHHHHHcCC--------------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC---------
Q 000818 548 VDGTNKKGLDRVRYILKHLSAGL--------------PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP--------- 604 (1268)
Q Consensus 548 IDaSs~~gId~IReLIEea~~~p--------------p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp--------- 604 (1268)
+++.... + .+++..-+.. ....+...+|||||++.|+...+..|+.+|++..
T Consensus 200 i~c~~~~--~---~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 200 VNCAALP--E---SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred EECCCCC--H---HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCce
Confidence 8877532 1 2222211110 0112345699999999999999999999998632
Q ss_pred --CcEEEEEEeCCCC-------CcchhhhcceeE--EEecCCC--HHHHHHH----HHHHHHhcC---CCCCHHHHHHHH
Q 000818 605 --QRVVFIFITTDID-------NVPRSIQSRCQK--YLFNKIK--DGDIVAR----LRKISAEEN---LNVEPDALDLIA 664 (1268)
Q Consensus 605 --~~vVfILaTn~~e-------KL~pAL~SRcq~--I~F~pLs--~eEI~~i----L~kiakkEg---i~Id~dALelLA 664 (1268)
.++.+|++|+..- .+.+.+..|+.. |.++|+. .+++... |.+...+.+ ..++++|++.|.
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 354 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 3478888887541 345556666544 5555554 2444433 334343333 468999999999
Q ss_pred HHc-CCCHHHHHHHHHHHHHh--CCccCHHHHH
Q 000818 665 LNA-DGSLRDAETMLDQLSLL--GKRITSSLVN 694 (1268)
Q Consensus 665 ~~S-~GDLRdAinlLEqLsll--gk~IT~edV~ 694 (1268)
.+. .||+|.+.+.|+.++.. +..|+.+++.
T Consensus 355 ~~~wpgNv~eL~~~~~~~~~~~~~~~i~~~~l~ 387 (457)
T PRK11361 355 AWSWPGNIRELSNVIERAVVMNSGPIIFSEDLP 387 (457)
T ss_pred cCCCCCcHHHHHHHHHHHHHhCCCCcccHHHCh
Confidence 977 99999999999998765 4578877765
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-08 Score=111.60 Aligned_cols=136 Identities=21% Similarity=0.281 Sum_probs=90.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC---------cChHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK---------KGLDRVRYILK 564 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~---------~gId~IReLIE 564 (1268)
..+|++||||||||++++++|+.|.-.-. ..-...-++||+..+. +-+..+-+-|+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~---------------~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTN---------------DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQ 242 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeec---------------CccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHH
Confidence 45899999999999999999999842111 0111345778886541 22333333444
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCCH---------------HHHHHHHHHHcCCC-CcEEEEEEeCCC-CCcchhhhcce
Q 000818 565 HLSAGLPSASPRFKVFVIDECHLLPS---------------KTWLAFLKFLEEPP-QRVVFIFITTDI-DNVPRSIQSRC 627 (1268)
Q Consensus 565 ea~~~pp~~~g~~KVIIIDEaD~LS~---------------ea~naLLK~LEepp-~~vVfILaTn~~-eKL~pAL~SRc 627 (1268)
++... .+..-.|+|||++.|.. .+.|+||..|+... ..-++|++|.+. +.++.++..|+
T Consensus 243 ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRA 318 (423)
T KOG0744|consen 243 ELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRA 318 (423)
T ss_pred HHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHh
Confidence 43322 34455788999998842 23789999887543 244566776665 68999999999
Q ss_pred eE-EEecCCCHHHHHHHHHHHH
Q 000818 628 QK-YLFNKIKDGDIVARLRKIS 648 (1268)
Q Consensus 628 q~-I~F~pLs~eEI~~iL~kia 648 (1268)
.+ +...+|+...+..+++.-.
T Consensus 319 Di~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 319 DIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred hheeecCCccHHHHHHHHHHHH
Confidence 87 6677787877777776543
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=110.16 Aligned_cols=204 Identities=20% Similarity=0.248 Sum_probs=137.5
Q ss_pred CccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEE
Q 000818 470 FDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEV 548 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEI 548 (1268)
+..++|....+..+...+.. ......+++.|++||||+++|+++..... .....|+.+
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~---------------------~~~~~~~~~ 191 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP---------------------RANGPFIAL 191 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC---------------------CCCCCeEEE
Confidence 45688887777766665543 12234689999999999999999976531 124577888
Q ss_pred cCCCCcChHHHHHHH-HHHHcC--------C-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcE
Q 000818 549 DGTNKKGLDRVRYIL-KHLSAG--------L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRV 607 (1268)
Q Consensus 549 DaSs~~gId~IReLI-Eea~~~--------p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~v 607 (1268)
|++... -+.+...+ ...... . ....+...++||||++.|+...+..|+++|++.. .++
T Consensus 192 ~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 192 NMAAIP-KDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred eCCCCC-HHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 876532 12222111 100000 0 0012335689999999999999999999998642 256
Q ss_pred EEEEEeCCCC-------Ccchhhhccee--EEEecCCC--HHHHHHHHHHH----HHhcC---CCCCHHHHHHHHHHc-C
Q 000818 608 VFIFITTDID-------NVPRSIQSRCQ--KYLFNKIK--DGDIVARLRKI----SAEEN---LNVEPDALDLIALNA-D 668 (1268)
Q Consensus 608 VfILaTn~~e-------KL~pAL~SRcq--~I~F~pLs--~eEI~~iL~ki----akkEg---i~Id~dALelLA~~S-~ 668 (1268)
.+|++|+..- .+.+.|..|+. .|.++|+. .+++..++..+ +...+ ..++++|++.|..+. .
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wp 350 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWP 350 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCC
Confidence 7888776542 35557777765 47777776 56766665544 33334 468999999999987 9
Q ss_pred CCHHHHHHHHHHHHHh--CCccCHHHHHH
Q 000818 669 GSLRDAETMLDQLSLL--GKRITSSLVNE 695 (1268)
Q Consensus 669 GDLRdAinlLEqLsll--gk~IT~edV~e 695 (1268)
||+|.+.+.+++++.. +..|+.+++..
T Consensus 351 gNvreL~~~~~~~~~~~~~~~i~~~~l~~ 379 (463)
T TIGR01818 351 GNVRQLENLCRWLTVMASGDEVLVSDLPA 379 (463)
T ss_pred ChHHHHHHHHHHHHHhCCCCcccHHhchH
Confidence 9999999999999876 45688877653
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=116.60 Aligned_cols=120 Identities=23% Similarity=0.377 Sum_probs=95.2
Q ss_pred ccccCcHHHHHHHHHHHHcCC-------CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 471 DELIGQNIVVQSLVNTISRGR-------IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIksgR-------i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
+.|+||++++.++.++|..-+ ..-.+||.||.|+|||.+|++||..++. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg---------------------se~ 620 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG---------------------SEE 620 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC---------------------Ccc
Confidence 357899999999999997533 3457899999999999999999999842 233
Q ss_pred cEEEEcCCC-------------CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC------
Q 000818 544 NFMEVDGTN-------------KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP------ 604 (1268)
Q Consensus 544 dfIEIDaSs-------------~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp------ 604 (1268)
.+|.||.++ +.|.+....|.+.+...| |.||+|||++.-....++.|++.|+++.
T Consensus 621 ~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP------~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 621 NFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRP------YSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred ceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCC------ceEEEEechhhcCHHHHHHHHHHHhcCccccCCC
Confidence 455554332 356677778888888655 6799999999999999999999999763
Q ss_pred -----CcEEEEEEeCCCC
Q 000818 605 -----QRVVFIFITTDID 617 (1268)
Q Consensus 605 -----~~vVfILaTn~~e 617 (1268)
.+++||+++|...
T Consensus 695 r~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVGS 712 (898)
T ss_pred cEeeccceEEEEecccch
Confidence 5788999887643
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-08 Score=102.22 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=71.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHH----HHcCC
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH----LSAGL 570 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEe----a~~~p 570 (1268)
.+||+||+|||||++|+.+|+.+ ...++.+........+++.....- ....+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------------------------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~ 56 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------------------------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD 56 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------------------------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------------------------hcceEEEEeccccccccceeeeeeccccccccc
Confidence 37999999999999999999998 345555655543333322111110 00000
Q ss_pred -CC--CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-------------CC------cEEEEEEeCCCC----Ccchhhh
Q 000818 571 -PS--ASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------------PQ------RVVFIFITTDID----NVPRSIQ 624 (1268)
Q Consensus 571 -p~--~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------------p~------~vVfILaTn~~e----KL~pAL~ 624 (1268)
+. ...+..|+||||++...++.++.|+.+|++. +. ++.||+++|... .+.++++
T Consensus 57 ~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 57 GPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp -CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred ccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 00 1125679999999999999999999999743 11 378888888877 7999999
Q ss_pred cce
Q 000818 625 SRC 627 (1268)
Q Consensus 625 SRc 627 (1268)
+||
T Consensus 137 ~Rf 139 (139)
T PF07728_consen 137 DRF 139 (139)
T ss_dssp TT-
T ss_pred hhC
Confidence 996
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=107.84 Aligned_cols=181 Identities=19% Similarity=0.196 Sum_probs=115.1
Q ss_pred CCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC--------CCCCCCCcccccccccC
Q 000818 469 FFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD--------QTKPCGYCRECNDFISG 540 (1268)
Q Consensus 469 tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e--------~~~PCg~C~sC~~i~sG 540 (1268)
.|.-++||+.....|.-..-..++ ..+||.|++|||||+++|+||.-|-..... ...|-..|..|..-...
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~i-ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQI-GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred chhhhcCchHHHHHHhhhhccccc-ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 578899999988877655444555 467889999999999999999988432211 12333467777655211
Q ss_pred C--------CccEEEEc--CCCCc---ChHHHHHHHHHH-HcCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC--
Q 000818 541 K--------SRNFMEVD--GTNKK---GLDRVRYILKHL-SAGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-- 603 (1268)
Q Consensus 541 ~--------s~dfIEID--aSs~~---gId~IReLIEea-~~~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-- 603 (1268)
. ...|+.+- ++..+ +++-.+.+-+.. .+.| -+..+++.|++|||+..|....+++||..++++
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 1 11222221 11110 122112221111 1111 124688899999999999999999999999873
Q ss_pred -----------CCcEEEEEEeCCCC-CcchhhhcceeE-EEecCC-CHHHHHHHHHHHHHh
Q 000818 604 -----------PQRVVFIFITTDID-NVPRSIQSRCQK-YLFNKI-KDGDIVARLRKISAE 650 (1268)
Q Consensus 604 -----------p~~vVfILaTn~~e-KL~pAL~SRcq~-I~F~pL-s~eEI~~iL~kiakk 650 (1268)
|.++++|.+.|-.+ .|-+.|+.|+.. +....+ +.++.+.++.+.+.-
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 56777777776543 799999999744 665554 456666777666544
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=112.24 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=95.6
Q ss_pred CccccCcHHHHHHHHHHHHcCCC-----------CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 470 FDELIGQNIVVQSLVNTISRGRI-----------APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksgRi-----------~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
.-.|+|++.++..|.-++..|.. .-++||+|+||||||++|+.+++........ .+.-.+|..+.
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~----~~~~~~~~~l~ 277 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYT----TGKGSSAVGLT 277 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEc----CCCCCCcCCcc
Confidence 33788999998888887776521 1279999999999999999999876211000 00001111110
Q ss_pred cCCCccEEEEcCCCCcChHHHHHHHHHHHc-CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-------------C
Q 000818 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSA-GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------------P 604 (1268)
Q Consensus 539 sG~s~dfIEIDaSs~~gId~IReLIEea~~-~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------------p 604 (1268)
. ..+ .+... ..+.. ..+...+...+++|||++.|....+.+|+..||+. +
T Consensus 278 ~----~~~-~~~~~-----------g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 278 A----AVT-RDPET-----------REFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred c----cce-EccCc-----------ceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 0 000 01000 00000 01123456779999999999999999999999864 2
Q ss_pred CcEEEEEEeCCCC-------------CcchhhhcceeE-EE-ecCCCHHHHHHHHHHH
Q 000818 605 QRVVFIFITTDID-------------NVPRSIQSRCQK-YL-FNKIKDGDIVARLRKI 647 (1268)
Q Consensus 605 ~~vVfILaTn~~e-------------KL~pAL~SRcq~-I~-F~pLs~eEI~~iL~ki 647 (1268)
..+.+|.++|... .|++++++|+.. +. ...++.+.-..++..+
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHH
Confidence 4566666666432 589999999954 33 3455554444444443
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-07 Score=112.00 Aligned_cols=187 Identities=17% Similarity=0.163 Sum_probs=114.2
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC--CC---cChHHHHHHH
Q 000818 489 RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT--NK---KGLDRVRYIL 563 (1268)
Q Consensus 489 sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS--s~---~gId~IReLI 563 (1268)
...+ .++||.|++|||||++|+.|++.+.. ...|+.+... .. .++ ++...+
T Consensus 13 ~p~~-g~vLl~G~~GtgKs~lar~l~~~~~~----------------------~~pfv~i~~~~t~d~L~G~i-dl~~~~ 68 (589)
T TIGR02031 13 DPSL-GGVAIRARAGTGKTALARALAEILPP----------------------IMPFVELPLGVTEDRLIGGI-DVEESL 68 (589)
T ss_pred CCCc-ceEEEEcCCCcHHHHHHHHHHHhCCc----------------------CCCeEecCcccchhhcccch-hhhhhh
Confidence 3444 57899999999999999999988732 1134444321 10 011 111101
Q ss_pred H-H-HHcCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-------------CcEEEEEEeCCCC---Ccchhhh
Q 000818 564 K-H-LSAGLP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-------------QRVVFIFITTDID---NVPRSIQ 624 (1268)
Q Consensus 564 E-e-a~~~pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-------------~~vVfILaTn~~e---KL~pAL~ 624 (1268)
. . +...+. .+..+..|+||||++.|+...++.|+..|++.. ..+.+|.++|..+ .+++++.
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Ll 148 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLL 148 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHH
Confidence 0 0 111121 223666799999999999999999999998652 3566665555443 6899999
Q ss_pred cceeE-EEecCC-CHHHHHHHHHHHH---------------------H--hcCCCCCHHHHHHHHHHc---CC-CHHHHH
Q 000818 625 SRCQK-YLFNKI-KDGDIVARLRKIS---------------------A--EENLNVEPDALDLIALNA---DG-SLRDAE 675 (1268)
Q Consensus 625 SRcq~-I~F~pL-s~eEI~~iL~kia---------------------k--kEgi~Id~dALelLA~~S---~G-DLRdAi 675 (1268)
.|+.. +.+..+ +.++...+++... + ...+.++++++++|+..+ +- ++|..+
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i 228 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADL 228 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHH
Confidence 99965 444333 3333333333321 1 125678999888888765 32 367766
Q ss_pred HHHHHH---HHh-C-CccCHHHHHHHhcc
Q 000818 676 TMLDQL---SLL-G-KRITSSLVNELVGV 699 (1268)
Q Consensus 676 nlLEqL---sll-g-k~IT~edV~eLVG~ 699 (1268)
.++..+ +.+ + ..|+.+||..++..
T Consensus 229 ~~~r~ArA~Aal~gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 229 FAVRAAKAHAALHGRTEVTEEDLKLAVEL 257 (589)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 666544 223 2 47888888877644
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-07 Score=110.12 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=99.3
Q ss_pred CCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccC-------
Q 000818 468 IFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG------- 540 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG------- 540 (1268)
..|+|++||..+++.+.-++..+ ++++|.||+|+|||++++.++..+...... .+-.+..+...
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g---~~vlliG~pGsGKTtlar~l~~llp~~~~~------~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG---HNLLLFGPPGSGKTMLASRLQGILPPLTNE------EAIETARIWSLVGKLIDR 259 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC---CEEEEEecCCCCHHHHHHHHhcccCCCCCc------EEEeccccccchhhhccc
Confidence 47999999999998888877654 679999999999999999998766221110 00111111000
Q ss_pred ---CCccEEEEcCCCCcChHHHHHHHHHHH-cCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC------------
Q 000818 541 ---KSRNFMEVDGTNKKGLDRVRYILKHLS-AGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP------------ 603 (1268)
Q Consensus 541 ---~s~dfIEIDaSs~~gId~IReLIEea~-~~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep------------ 603 (1268)
...+|.....+.. .. .++.... ..+ ....+...|+||||++.|....++.|+..||+.
T Consensus 260 ~~~~~~Pf~~p~~s~s--~~---~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~ 334 (499)
T TIGR00368 260 KQIKQRPFRSPHHSAS--KP---ALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 (499)
T ss_pred cccccCCccccccccc--hh---hhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence 1122322221110 00 0100000 000 012345679999999999999999999999864
Q ss_pred -CCcEEEEEEeCCC------C-----------------CcchhhhcceeE-EEecCCCHHH
Q 000818 604 -PQRVVFIFITTDI------D-----------------NVPRSIQSRCQK-YLFNKIKDGD 639 (1268)
Q Consensus 604 -p~~vVfILaTn~~------e-----------------KL~pAL~SRcq~-I~F~pLs~eE 639 (1268)
|.++.+|+++|.- . ++..+|++|+.. +.+.+++..+
T Consensus 335 ~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred ccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 3578888888752 1 478899999976 7777775544
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=100.85 Aligned_cols=203 Identities=16% Similarity=0.201 Sum_probs=135.5
Q ss_pred CCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
.-|+.||+....++.+....++ .-+...+||.|+.||||..+|++.-.+ ....+..|+
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~---------------------S~R~~~pFl 259 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA---------------------SPRHSKPFL 259 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc---------------------CcccCCCee
Confidence 3599999999888888766553 233356899999999999999876322 233467899
Q ss_pred EEcCCCCcChHHHHHHHHHHHcCCCC-------CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEE
Q 000818 547 EVDGTNKKGLDRVRYILKHLSAGLPS-------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVV 608 (1268)
Q Consensus 547 EIDaSs~~gId~IReLIEea~~~pp~-------~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vV 608 (1268)
.+|++... ++. .-.+-+.+.+.. -.+....|++||+..|++..+..||++|.++. .+|.
T Consensus 260 alNCA~lP--e~~-aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVR 336 (511)
T COG3283 260 ALNCASLP--EDA-AESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVR 336 (511)
T ss_pred EeecCCCc--hhH-hHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEE
Confidence 99988632 211 111222222210 12344579999999999999999999997542 4677
Q ss_pred EEEEeCCCC-------CcchhhhcceeEEE--ecCCCH--HH----HHHHHHHHHHhcCC---CCCHHHHHHHHHHc-CC
Q 000818 609 FIFITTDID-------NVPRSIQSRCQKYL--FNKIKD--GD----IVARLRKISAEENL---NVEPDALDLIALNA-DG 669 (1268)
Q Consensus 609 fILaTn~~e-------KL~pAL~SRcq~I~--F~pLs~--eE----I~~iL~kiakkEgi---~Id~dALelLA~~S-~G 669 (1268)
+|.+|..+- ++-..+.-|..++. ++|+.+ .+ ..-++++++.+.++ +++++.+.+|.++- .|
T Consensus 337 VIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpG 416 (511)
T COG3283 337 VICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPG 416 (511)
T ss_pred EEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCc
Confidence 777776541 34445556666533 333322 12 22356777777766 47889999888876 99
Q ss_pred CHHHHHHHHHHHHHh--CCccCHHHHH
Q 000818 670 SLRDAETMLDQLSLL--GKRITSSLVN 694 (1268)
Q Consensus 670 DLRdAinlLEqLsll--gk~IT~edV~ 694 (1268)
|+|.+.|.|-+++.. +..++.+++.
T Consensus 417 NVRqL~N~iyRA~s~~Eg~~l~i~~i~ 443 (511)
T COG3283 417 NVRQLKNAIYRALTLLEGYELRIEDIL 443 (511)
T ss_pred cHHHHHHHHHHHHHHhccCccchhhcc
Confidence 999999998887544 5566666654
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=102.77 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=132.4
Q ss_pred cccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcC
Q 000818 472 ELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG 550 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDa 550 (1268)
.++|....+..+...+.. ......++|+|++||||+++|+++..... .....|+.+++
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~---------------------~~~~~~i~~~c 198 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA---------------------RSEKPLVTLNC 198 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCC---------------------CCCCCeeeeeC
Confidence 577777766666655542 22236689999999999999999965531 12468899998
Q ss_pred CCCcChHHHHHHH-HHHHcC--------C-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEEE
Q 000818 551 TNKKGLDRVRYIL-KHLSAG--------L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVVF 609 (1268)
Q Consensus 551 Ss~~gId~IReLI-Eea~~~--------p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vVf 609 (1268)
+... ...+...+ ...... . ........++||||++.|+...+..|+.++++.. .++.+
T Consensus 199 ~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (441)
T PRK10365 199 AALN-ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRL 277 (441)
T ss_pred CCCC-HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEE
Confidence 7632 22222211 110000 0 0123446689999999999999999999998742 24678
Q ss_pred EEEeCCCC-------CcchhhhcceeE--EEecCCCH--HHHHHHHHHH----HHhcC---CCCCHHHHHHHHHHc-CCC
Q 000818 610 IFITTDID-------NVPRSIQSRCQK--YLFNKIKD--GDIVARLRKI----SAEEN---LNVEPDALDLIALNA-DGS 670 (1268)
Q Consensus 610 ILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~--eEI~~iL~ki----akkEg---i~Id~dALelLA~~S-~GD 670 (1268)
|++|+..- .+.+.+..|+.. +.++|+.. +++...+..+ +.+.+ ..+++++++.|..+. .||
T Consensus 278 i~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (441)
T PRK10365 278 IAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 (441)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCH
Confidence 88876652 244555556544 45555542 3444444433 33333 358999999999988 999
Q ss_pred HHHHHHHHHHHHHh--CCccCHHHHHH
Q 000818 671 LRDAETMLDQLSLL--GKRITSSLVNE 695 (1268)
Q Consensus 671 LRdAinlLEqLsll--gk~IT~edV~e 695 (1268)
+|.+.+.|++++.. +..|+.+++..
T Consensus 358 ~reL~~~~~~~~~~~~~~~i~~~~l~~ 384 (441)
T PRK10365 358 IRELENAVERAVVLLTGEYISERELPL 384 (441)
T ss_pred HHHHHHHHHHHHHhCCCCccchHhCch
Confidence 99999999998765 55788777643
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-07 Score=97.39 Aligned_cols=122 Identities=23% Similarity=0.278 Sum_probs=77.7
Q ss_pred ccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCC
Q 000818 473 LIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT 551 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaS 551 (1268)
|||.+..++.+.+.++. ......+||+|++||||+.+|+++-+.- .....+|+.+|++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---------------------~r~~~pfi~vnc~ 59 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---------------------PRKNGPFISVNCA 59 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---------------------TTTTS-EEEEETT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---------------------hcccCCeEEEehh
Confidence 57888888887777764 3344678999999999999999996632 1225689999998
Q ss_pred CCcChHHH-HHHHHHHHcCCC---------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CCcEEEE
Q 000818 552 NKKGLDRV-RYILKHLSAGLP---------SASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQRVVFI 610 (1268)
Q Consensus 552 s~~gId~I-ReLIEea~~~pp---------~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~~vVfI 610 (1268)
... .+.+ .+|+-....... ...+...++||||++.|+...+..|+++|++. +.++.||
T Consensus 60 ~~~-~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 138 (168)
T PF00158_consen 60 ALP-EELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRII 138 (168)
T ss_dssp TS--HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEE
T ss_pred hhh-cchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEE
Confidence 642 1211 112211000000 01235569999999999999999999999853 2478889
Q ss_pred EEeCCC
Q 000818 611 FITTDI 616 (1268)
Q Consensus 611 LaTn~~ 616 (1268)
++|+.+
T Consensus 139 ~st~~~ 144 (168)
T PF00158_consen 139 ASTSKD 144 (168)
T ss_dssp EEESS-
T ss_pred eecCcC
Confidence 998865
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-06 Score=95.28 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=121.6
Q ss_pred ccCcHHHHHH---HHHHHHc---CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE
Q 000818 473 LIGQNIVVQS---LVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 473 LVGQe~vv~t---Lk~aIks---gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
-||.+.+.+. |...+.. .| .|++||+|++|.|||++++.|.+........ .+...+|+
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~---------------~~~~~PVv 99 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHR-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDE---------------DAERIPVV 99 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccC-CCceEEecCCCCcHHHHHHHHHHHCCCCCCC---------------CCccccEE
Confidence 3666655544 4444443 33 4899999999999999999999875211100 11133666
Q ss_pred EEcCCCCcChHHH-HHHHHHHHcCCC-C---------------CCCCcEEEEEeCCCCCCHH---H---HHHHHHHH-cC
Q 000818 547 EVDGTNKKGLDRV-RYILKHLSAGLP-S---------------ASPRFKVFVIDECHLLPSK---T---WLAFLKFL-EE 602 (1268)
Q Consensus 547 EIDaSs~~gId~I-ReLIEea~~~pp-~---------------~~g~~KVIIIDEaD~LS~e---a---~naLLK~L-Ee 602 (1268)
.+.....-+...+ ..|++.+.. |. . ..-+-+++||||+|.+... . +-.+||+| .+
T Consensus 100 ~vq~P~~p~~~~~Y~~IL~~lga-P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 100 YVQMPPEPDERRFYSAILEALGA-PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE 178 (302)
T ss_pred EEecCCCCChHHHHHHHHHHhCc-ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc
Confidence 6654332222221 122222211 10 0 0134569999999996321 1 22234444 34
Q ss_pred CCCcEEEEEEeCCCC----CcchhhhcceeEEEecCCCH-HHHHHHHHHHHHhcCC----C-CCHHHHHHHHHHcCCCHH
Q 000818 603 PPQRVVFIFITTDID----NVPRSIQSRCQKYLFNKIKD-GDIVARLRKISAEENL----N-VEPDALDLIALNADGSLR 672 (1268)
Q Consensus 603 pp~~vVfILaTn~~e----KL~pAL~SRcq~I~F~pLs~-eEI~~iL~kiakkEgi----~-Id~dALelLA~~S~GDLR 672 (1268)
. .+.+|++.+..- .-++.+.+|+..+.+++-.. ++....|..+.....+ . -+++...+|...++|.+.
T Consensus 179 L--~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 179 L--QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred c--CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 4 455555554332 34789999999988876654 4455555444332211 1 345667899999999999
Q ss_pred HHHHHHHHHHHh-----CCccCHHHHHHH
Q 000818 673 DAETMLDQLSLL-----GKRITSSLVNEL 696 (1268)
Q Consensus 673 dAinlLEqLsll-----gk~IT~edV~eL 696 (1268)
....+|..++.. .+.||.+.+.++
T Consensus 257 ~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 257 ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 999999998754 368998888753
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=111.22 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=91.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCC--C
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL--P 571 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~p--p 571 (1268)
..+|||||||||||.+||.+.+.||...|. +.+ ++.++ +.--....++||.|+..+.... -
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePK-------------IVN--GPeIL--~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPK-------------IVN--GPEIL--NKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCc-------------ccC--cHHHH--HHhhcccHHHHHHHHHhHHHHHHhh
Confidence 568999999999999999999999864432 111 11111 1000112467888887664321 1
Q ss_pred CCCCCcEEEEEeCCCCCC-------------HHHHHHHHHHHcC--CCCcEEEEEEeCCCCCcchhhhc--ceeE-EEec
Q 000818 572 SASPRFKVFVIDECHLLP-------------SKTWLAFLKFLEE--PPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFN 633 (1268)
Q Consensus 572 ~~~g~~KVIIIDEaD~LS-------------~ea~naLLK~LEe--pp~~vVfILaTn~~eKL~pAL~S--Rcq~-I~F~ 633 (1268)
-..++-.|||+||+|.+- ....|.||.-|+. --.++.+|..||+.+-++.+|++ |+.+ ++..
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 124667799999999873 3457888887763 23589999999999999999998 5554 6677
Q ss_pred CCCHHHHHHHH
Q 000818 634 KIKDGDIVARL 644 (1268)
Q Consensus 634 pLs~eEI~~iL 644 (1268)
.|++.-..++|
T Consensus 400 LPDE~gRlQIl 410 (744)
T KOG0741|consen 400 LPDEKGRLQIL 410 (744)
T ss_pred CCCccCceEEE
Confidence 77766555554
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=83.88 Aligned_cols=96 Identities=27% Similarity=0.354 Sum_probs=61.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC--------------------
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-------------------- 552 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-------------------- 552 (1268)
.+.++|+||+|+|||++++.+|..+.... ..++.+++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---------------------GGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---------------------CCEEEECCEEccccCHHHHHhhhhhccCCC
Confidence 36799999999999999999999985321 1233333221
Q ss_pred CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH--------HHcCCCCcEEEEEEeCC
Q 000818 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLK--------FLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 553 ~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK--------~LEepp~~vVfILaTn~ 615 (1268)
..+...++.+++.+.... ..||||||++.+.......+.. ..........+|++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~------~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 61 GSGELRLRLALALARKLK------PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCHHHHHHHHHHHHHhcC------CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 122344555555555322 4699999999998766554432 22233446777778775
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.6e-07 Score=88.47 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=79.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHH-HHHHHHHHcCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRV-RYILKHLSAGLPS 572 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~I-ReLIEea~~~pp~ 572 (1268)
++++|+||+|+|||++++.+++.+. ...+++.++..+....... .++.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----------------------~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~-- 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----------------------PPENILYINFDDPRDRRLADPDLLEYFLELI-- 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----------------------ccccceeeccCCHHHHHHhhhhhHHHHHHhh--
Confidence 5789999999999999999998873 1235666665542211100 01222222211
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC----CcchhhhcceeEEEecCCCHHHH
Q 000818 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID----NVPRSIQSRCQKYLFNKIKDGDI 640 (1268)
Q Consensus 573 ~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e----KL~pAL~SRcq~I~F~pLs~eEI 640 (1268)
..+.++|||||++.+. +.+..+..+++.. .++.||+++.... .+...+..|...+.+.|++-.|+
T Consensus 59 -~~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 -KPGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -ccCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 1256799999999986 4555555666655 5677777776654 34567778889999999987764
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-07 Score=95.13 Aligned_cols=108 Identities=22% Similarity=0.259 Sum_probs=57.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHH------HHHHHc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI------LKHLSA 568 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReL------IEea~~ 568 (1268)
++||+|+||+|||++|+++|+.+.. .|..|......-..+|.-. -..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~------------------------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~ 56 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL------------------------SFKRIQFTPDLLPSDILGFPVYDQETGEFEF 56 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------------------------EEEEE--TT--HHHHHEEEEEETTTTEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC------------------------ceeEEEecCCCCcccceeeeeeccCCCeeEe
Confidence 5799999999999999999999842 3333332221111111100 011111
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC----------CcEEEEEEeCCC-C-----Ccchhhhccee
Q 000818 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP----------QRVVFIFITTDI-D-----NVPRSIQSRCQ 628 (1268)
Q Consensus 569 ~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp----------~~vVfILaTn~~-e-----KL~pAL~SRcq 628 (1268)
.+.+.+ ..|+++||+.+.++..+.+||..|++.. +.-.+|++|.++ + .|+.+++.|+.
T Consensus 57 ~~GPif--~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 57 RPGPIF--TNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp EE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ecChhh--hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 111122 2399999999999999999999998642 122345555554 3 58888888863
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-06 Score=102.17 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=123.7
Q ss_pred ccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc
Q 000818 471 DELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD 549 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID 549 (1268)
.|++--+.+.+...+.... .-..+++||+||+|+|||.+++++++++... ...-|..++
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~--------------------~~~hv~~v~ 467 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKD--------------------LIAHVEIVS 467 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccc--------------------cceEEEEEe
Confidence 4555444444443332211 2223678999999999999999999998310 022333445
Q ss_pred CCCC--cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH----------H-------HHHHHHHHcCCCCcEEEE
Q 000818 550 GTNK--KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK----------T-------WLAFLKFLEEPPQRVVFI 610 (1268)
Q Consensus 550 aSs~--~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e----------a-------~naLLK~LEepp~~vVfI 610 (1268)
++.. +.++.|...+..+.... ..-..-||++|++|.|... . .+.+.+..-+....+.||
T Consensus 468 Cs~l~~~~~e~iQk~l~~vfse~--~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~I 545 (952)
T KOG0735|consen 468 CSTLDGSSLEKIQKFLNNVFSEA--LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVI 545 (952)
T ss_pred chhccchhHHHHHHHHHHHHHHH--HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEE
Confidence 5442 23566655554432111 1112239999999988430 1 122222223344556777
Q ss_pred EEeCCCCCcchhhhc--ceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 000818 611 FITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG-SLRDAETMLDQLSL 683 (1268)
Q Consensus 611 LaTn~~eKL~pAL~S--Rcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G-DLRdAinlLEqLsl 683 (1268)
++.+....+.+.|.+ +++. +.+++|...+...+|..++++....+..+.|++++..++| ..++.....+++..
T Consensus 546 at~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~ 622 (952)
T KOG0735|consen 546 ATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIH 622 (952)
T ss_pred EechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHH
Confidence 787878888887776 4454 7889999999999999999998888888999999999988 56777777777643
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-06 Score=94.93 Aligned_cols=184 Identities=22% Similarity=0.328 Sum_probs=116.2
Q ss_pred ccCcHHHHHHHHHHHHc-------C-C-----C-CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc
Q 000818 473 LIGQNIVVQSLVNTISR-------G-R-----I-APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks-------g-R-----i-~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~ 538 (1268)
+|||+.+++.|.-++-+ . . + ...+||.||.|+|||.+|+.||+.|+
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln-------------------- 122 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN-------------------- 122 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC--------------------
Confidence 67999888766543321 0 1 1 25789999999999999999999994
Q ss_pred cCCCccEEEEcCCC-----CcC--hHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHH
Q 000818 539 SGKSRNFMEVDGTN-----KKG--LDR-VRYILKHLSAGLPSASPRFKVFVIDECHLLP--------------SKTWLAF 596 (1268)
Q Consensus 539 sG~s~dfIEIDaSs-----~~g--Id~-IReLIEea~~~pp~~~g~~KVIIIDEaD~LS--------------~ea~naL 596 (1268)
.+|..-|++. +.| +++ +..|+..+.+.. ..+.+.||+|||+|.++ ...+.+|
T Consensus 123 ----VPFaiADATtLTEAGYVGEDVENillkLlqaadydV--~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQAL 196 (408)
T COG1219 123 ----VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDV--ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQAL 196 (408)
T ss_pred ----CCeeeccccchhhccccchhHHHHHHHHHHHcccCH--HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHH
Confidence 3444444433 222 222 233444433322 24677899999999984 3458999
Q ss_pred HHHHcC-----CC----------------CcEEEEEEe----------------------CCC---C-------------
Q 000818 597 LKFLEE-----PP----------------QRVVFIFIT----------------------TDI---D------------- 617 (1268)
Q Consensus 597 LK~LEe-----pp----------------~~vVfILaT----------------------n~~---e------------- 617 (1268)
||++|. || .++.||+.. +.. .
T Consensus 197 LKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vep 276 (408)
T COG1219 197 LKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEP 276 (408)
T ss_pred HHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcCh
Confidence 999984 21 234454411 000 0
Q ss_pred ------CcchhhhcceeE-EEecCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHHc---CCCHHHH
Q 000818 618 ------NVPRSIQSRCQK-YLFNKIKDGDIVARLRK-----------ISAEEN--LNVEPDALDLIALNA---DGSLRDA 674 (1268)
Q Consensus 618 ------KL~pAL~SRcq~-I~F~pLs~eEI~~iL~k-----------iakkEg--i~Id~dALelLA~~S---~GDLRdA 674 (1268)
-|.|.+.-|.-+ ..+.+++.++++++|.+ .+.-++ +.++++||..||+.+ .-..|-+
T Consensus 277 eDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGL 356 (408)
T COG1219 277 EDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGL 356 (408)
T ss_pred HHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHH
Confidence 146677778765 67889999998888743 223334 357899999999877 3335555
Q ss_pred HHHHHHHH
Q 000818 675 ETMLDQLS 682 (1268)
Q Consensus 675 inlLEqLs 682 (1268)
.+.++.+.
T Consensus 357 RsI~E~~l 364 (408)
T COG1219 357 RSIIEELL 364 (408)
T ss_pred HHHHHHHH
Confidence 56666553
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=92.23 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=86.6
Q ss_pred EEEEeCCCCCCH------------HHHHHHHHHHcCC----------CCcEEEEEEe----CCCCCcchhhhcceeE-EE
Q 000818 579 VFVIDECHLLPS------------KTWLAFLKFLEEP----------PQRVVFIFIT----TDIDNVPRSIQSRCQK-YL 631 (1268)
Q Consensus 579 VIIIDEaD~LS~------------ea~naLLK~LEep----------p~~vVfILaT----n~~eKL~pAL~SRcq~-I~ 631 (1268)
||||||+|.+.. ..+.-||.++|.. ..++.||.+. ..|..|.|.|.-|+-+ +.
T Consensus 253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVE 332 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVE 332 (444)
T ss_pred eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEE
Confidence 899999998742 2366788888742 2456666553 3456899999999965 99
Q ss_pred ecCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH----Hh--
Q 000818 632 FNKIKDGDIVARLRK-----------ISAEENL--NVEPDALDLIALNA--------DGSLRDAETMLDQLS----LL-- 684 (1268)
Q Consensus 632 F~pLs~eEI~~iL~k-----------iakkEgi--~Id~dALelLA~~S--------~GDLRdAinlLEqLs----ll-- 684 (1268)
+..++.+++..+|.+ .++.|++ .++++|++.||..+ +=..|.+...|+++. +.
T Consensus 333 L~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA~ 412 (444)
T COG1220 333 LDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAP 412 (444)
T ss_pred cccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCccCC
Confidence 999999999888743 2445555 57899999999977 224677777777663 22
Q ss_pred ---CC--ccCHHHHHHHhccc
Q 000818 685 ---GK--RITSSLVNELVGVV 700 (1268)
Q Consensus 685 ---gk--~IT~edV~eLVG~v 700 (1268)
++ .|+.+-|.+-++.+
T Consensus 413 d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 413 DMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred cCCCCeEEEcHHHHHHHHHHH
Confidence 22 57777777766543
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-06 Score=103.41 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=90.0
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHcCC--------------------CCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGR--------------------IAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgR--------------------i~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.+.....| .|.|++.+++.|.-++-.|. -..++||.|+|||||+.+|+.+++....
T Consensus 443 ~L~~SiaP----~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR 518 (915)
T PTZ00111 443 ILLDSFAP----SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR 518 (915)
T ss_pred HHHHHhCC----eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc
Confidence 34444555 67899999998887775542 1137999999999999999999875311
Q ss_pred ccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHH-cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH
Q 000818 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS-AGLPSASPRFKVFVIDECHLLPSKTWLAFLK 598 (1268)
Q Consensus 520 e~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~-~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK 598 (1268)
.. +..|. .+..++.... +.........+. .......+...+++|||++.|+...+.+|+.
T Consensus 519 ~~---------------ytsG~--~~s~vgLTa~--~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlE 579 (915)
T PTZ00111 519 SI---------------YTSGK--SSSSVGLTAS--IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYE 579 (915)
T ss_pred cc---------------cCCCC--CCccccccch--hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHH
Confidence 00 00011 1111111100 000000000000 0011234566799999999999999999999
Q ss_pred HHcCC-------------CCcEEEEEEeCCCC-------------CcchhhhcceeE
Q 000818 599 FLEEP-------------PQRVVFIFITTDID-------------NVPRSIQSRCQK 629 (1268)
Q Consensus 599 ~LEep-------------p~~vVfILaTn~~e-------------KL~pAL~SRcq~ 629 (1268)
.||+. +.++.+|.++|... .|+++|++|+..
T Consensus 580 aMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 580 VMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred HHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 99864 24677777776531 478999999965
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-07 Score=107.57 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=80.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccC------
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG------ 540 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG------ 540 (1268)
...|.||+||+.++++|.-+...| |++||+||||||||.+|+.+..-|-.....+.. -.+-.....+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~l----E~s~I~s~~g~~~~~~ 247 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEAL----EVSAIHSLAGDLHEGC 247 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhcccCCCCChHHHH----HHHHHhhhcccccccC
Confidence 347999999999999999888776 689999999999999999987665221110000 0000000000
Q ss_pred ---CCccEEEEcCCCCcChHHHHHHHHHHHc-CC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC------------
Q 000818 541 ---KSRNFMEVDGTNKKGLDRVRYILKHLSA-GL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP------------ 603 (1268)
Q Consensus 541 ---~s~dfIEIDaSs~~gId~IReLIEea~~-~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep------------ 603 (1268)
...+|..= ..+ .....++-.-.. .| ....++..|+||||+..+.....++|..-||+.
T Consensus 248 ~~~~~rPFr~P-HHs----aS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ 322 (490)
T COG0606 248 PLKIHRPFRAP-HHS----ASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322 (490)
T ss_pred ccceeCCccCC-Ccc----chHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeE
Confidence 00111000 000 001111111000 01 112467779999999999999999999999864
Q ss_pred -CCcEEEEEEeCC
Q 000818 604 -PQRVVFIFITTD 615 (1268)
Q Consensus 604 -p~~vVfILaTn~ 615 (1268)
|.++.+|+++|-
T Consensus 323 ypa~Fqlv~AmNp 335 (490)
T COG0606 323 YPARFQLVAAMNP 335 (490)
T ss_pred EeeeeEEhhhcCC
Confidence 445555666653
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-05 Score=87.99 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=119.9
Q ss_pred ccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC
Q 000818 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN 552 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs 552 (1268)
..-+..++..+...|..++ ..+.++|+-|+|||.+.|++...++.. ...++.|+...
T Consensus 33 ~a~h~e~l~~l~~~i~d~q--g~~~vtGevGsGKTv~~Ral~~s~~~d---------------------~~~~v~i~~~~ 89 (269)
T COG3267 33 AADHNEALLMLHAAIADGQ--GILAVTGEVGSGKTVLRRALLASLNED---------------------QVAVVVIDKPT 89 (269)
T ss_pred hhhhhHHHHHHHHHHhcCC--ceEEEEecCCCchhHHHHHHHHhcCCC---------------------ceEEEEecCcc
Confidence 3456788888999998886 368999999999999999877776421 11123333221
Q ss_pred Cc------------------ChH----HH-HHHHHHHHcCCCCCCCCc-EEEEEeCCCCCCHHHHHHHHHHHc---CCCC
Q 000818 553 KK------------------GLD----RV-RYILKHLSAGLPSASPRF-KVFVIDECHLLPSKTWLAFLKFLE---EPPQ 605 (1268)
Q Consensus 553 ~~------------------gId----~I-ReLIEea~~~pp~~~g~~-KVIIIDEaD~LS~ea~naLLK~LE---epp~ 605 (1268)
.. .+. .+ +.+.+.+. .+.+ .+++|||+|.|...+..+|+.+.+ +...
T Consensus 90 ~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~------~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~ 163 (269)
T COG3267 90 LSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK------KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSK 163 (269)
T ss_pred hhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH------hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccC
Confidence 11 111 11 11222222 3444 789999999999988877766653 3333
Q ss_pred cEEEEEEeCC--CCC----cchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHH
Q 000818 606 RVVFIFITTD--IDN----VPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLN---VEPDALDLIALNADGSLRDAE 675 (1268)
Q Consensus 606 ~vVfILaTn~--~eK----L~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~---Id~dALelLA~~S~GDLRdAi 675 (1268)
...++++... ..+ ....+..||.+ |...|++.++...+|+..++..+.. ++++++..|+..+.|-+|..-
T Consensus 164 ~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin 243 (269)
T COG3267 164 LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLIN 243 (269)
T ss_pred ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHH
Confidence 3334444321 111 23467789988 9999999999999999998877554 689999999999999777665
Q ss_pred HHHHHH
Q 000818 676 TMLDQL 681 (1268)
Q Consensus 676 nlLEqL 681 (1268)
+.+.++
T Consensus 244 ~~~~~A 249 (269)
T COG3267 244 NLATLA 249 (269)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=98.26 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=95.1
Q ss_pred CCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc--C-----
Q 000818 468 IFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS--G----- 540 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s--G----- 540 (1268)
..|.+++||..+++.+.-++..+ ++++|+||+|+|||++++.++..+.....+. .-.+..+.+ |
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G---~~llliG~~GsGKTtLak~L~gllpp~~g~e------~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG---HNLLLIGPPGTGKTMLASRINGLLPDLSNEE------ALESAAILSLVNAESVQ 258 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC---cEEEEECCCCCcHHHHHHHHhccCCCCCCcE------EEecchhhhhhcccccc
Confidence 47899999999888876665544 6899999999999999999987763211110 011111110 0
Q ss_pred ---CCccEEEEcCCCCcChHHHHHHHHH-HHcCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC------------
Q 000818 541 ---KSRNFMEVDGTNKKGLDRVRYILKH-LSAGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP------------ 603 (1268)
Q Consensus 541 ---~s~dfIEIDaSs~~gId~IReLIEe-a~~~p-p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep------------ 603 (1268)
...+|..-..+ +. ...++-. ....+ ....++..|+||||++.+....++.|+..||+.
T Consensus 259 ~~~~~rPfr~ph~~----~s-~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~ 333 (506)
T PRK09862 259 KQWRQRPFRSPHHS----AS-LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333 (506)
T ss_pred CCcCCCCccCCCcc----ch-HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee
Confidence 01111111000 00 0111110 00000 012355679999999999999999999999753
Q ss_pred -CCcEEEEEEeCCCC---------------------CcchhhhcceeE-EEecCCC
Q 000818 604 -PQRVVFIFITTDID---------------------NVPRSIQSRCQK-YLFNKIK 636 (1268)
Q Consensus 604 -p~~vVfILaTn~~e---------------------KL~pAL~SRcq~-I~F~pLs 636 (1268)
|.++.+|.++|... ++..++++|+.. +.+.+++
T Consensus 334 ~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 334 YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 45677787777542 467799999977 7777664
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=89.45 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHcC-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc-EEEEcCCCC-
Q 000818 477 NIVVQSLVNTISRG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN-FMEVDGTNK- 553 (1268)
Q Consensus 477 e~vv~tLk~aIksg-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d-fIEIDaSs~- 553 (1268)
+..++.|...+... .-...+.|+|++|+|||++|+.+++...... .++ ++-++....
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~--------------------~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN--------------------RFDGVIWVSLSKNP 61 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC--------------------CCTEEEEEEEES-S
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc--------------------cccccccccccccc
Confidence 56678888888772 3347899999999999999999987732100 011 111221111
Q ss_pred cChHHHHHHHHHHHcCCCC-----------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 554 KGLDRVRYILKHLSAGLPS-----------------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 554 ~gId~IReLIEea~~~pp~-----------------~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
...+-+..++..+...... ...++-+||||+++... .+..|...+.....++.+|+||...
T Consensus 62 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 62 SLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc
Confidence 1122223333333322100 12446799999987543 4555555554444467777777654
Q ss_pred CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCHHHH
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN---LNVEPDALDLIALNADGSLRDA 674 (1268)
Q Consensus 617 eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEg---i~Id~dALelLA~~S~GDLRdA 674 (1268)
.+...+......+.+.+++.++....+.+.+.... ....++.+..|++.++|.+-.+
T Consensus 140 -~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 140 -SVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp -GGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444444477899999999999999988875544 1122456678889998866444
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.6e-06 Score=94.04 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=75.0
Q ss_pred hhhcCCCCCcccc----CcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 462 SQKYKPIFFDELI----GQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 462 ~eKYRP~tFdDLV----GQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
...++..+|+.+. |+..++..+...+.. ..-...++|+||+|||||++|.++++.+...
T Consensus 65 ~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~---------------- 128 (248)
T PRK12377 65 QPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK---------------- 128 (248)
T ss_pred CcccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc----------------
Confidence 3557777899886 333344444433331 1113579999999999999999999998421
Q ss_pred cccCCCccEEEEcCCCCcChHHHH----------HHHHHHHcCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHHcCCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVR----------YILKHLSAGLPSASPRFKVFVIDECH--LLPSKTWLAFLKFLEEPP 604 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~IR----------eLIEea~~~pp~~~g~~KVIIIDEaD--~LS~ea~naLLK~LEepp 604 (1268)
+..++.+...+. +..++ .+++.+ ....||||||++ .++......|..+++..-
T Consensus 129 -----g~~v~~i~~~~l--~~~l~~~~~~~~~~~~~l~~l--------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~ 193 (248)
T PRK12377 129 -----GRSVIVVTVPDV--MSRLHESYDNGQSGEKFLQEL--------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT 193 (248)
T ss_pred -----CCCeEEEEHHHH--HHHHHHHHhccchHHHHHHHh--------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 223344433221 11111 233332 334599999995 456667778888887543
Q ss_pred C-cEEEEEEeCCC
Q 000818 605 Q-RVVFIFITTDI 616 (1268)
Q Consensus 605 ~-~vVfILaTn~~ 616 (1268)
. ....|++||..
T Consensus 194 ~~~~ptiitSNl~ 206 (248)
T PRK12377 194 ASMRSVGMLTNLN 206 (248)
T ss_pred hcCCCEEEEcCCC
Confidence 2 34567778755
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-06 Score=87.20 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=78.3
Q ss_pred cCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC
Q 000818 474 IGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN 552 (1268)
Q Consensus 474 VGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs 552 (1268)
||....++.+.+.+.. ......+||+|++||||+++|+.|...-.. ....|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---------------------~~~~~~~~~~~~ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---------------------ANGPFIVIDCAS 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---------------------CCS-CCCCCHHC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---------------------cCCCeEEechhh
Confidence 5666777777776654 223356899999999999999999765321 122333333332
Q ss_pred CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-CCcEEEEEEeCCCC-------Ccchhhh
Q 000818 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-PQRVVFIFITTDID-------NVPRSIQ 624 (1268)
Q Consensus 553 ~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-p~~vVfILaTn~~e-------KL~pAL~ 624 (1268)
.. .++++.+ ....+||+|++.|+.+.+..|+.+|+.. ..++.+|+++...- .+.+.+.
T Consensus 60 ~~-----~~~l~~a---------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~ 125 (138)
T PF14532_consen 60 LP-----AELLEQA---------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLY 125 (138)
T ss_dssp TC-----HHHHHHC---------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHH
T ss_pred Cc-----HHHHHHc---------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHH
Confidence 11 2344442 2348999999999999999999999853 56788888887652 2455666
Q ss_pred ccee--EEEecC
Q 000818 625 SRCQ--KYLFNK 634 (1268)
Q Consensus 625 SRcq--~I~F~p 634 (1268)
.|+. .+.+++
T Consensus 126 ~~l~~~~i~lPp 137 (138)
T PF14532_consen 126 YRLSQLEIHLPP 137 (138)
T ss_dssp HHCSTCEEEE--
T ss_pred HHhCCCEEeCCC
Confidence 5553 344443
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-05 Score=91.80 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=56.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-----CcC--hHH-HHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-----KKG--LDR-VRYILKH 565 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-----~~g--Id~-IReLIEe 565 (1268)
..+||.||.|+|||.+|+.||+-|+ .+|..-|+.. +.| ++. |..|+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld------------------------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~ 282 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD------------------------VPFAICDCTTLTQAGYVGEDVESVIQKLLQE 282 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC------------------------CCeEEecccchhhcccccccHHHHHHHHHHH
Confidence 4689999999999999999999984 2333334332 112 222 3334444
Q ss_pred HHcCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHcC
Q 000818 566 LSAGLPSASPRFKVFVIDECHLLP--------------SKTWLAFLKFLEE 602 (1268)
Q Consensus 566 a~~~pp~~~g~~KVIIIDEaD~LS--------------~ea~naLLK~LEe 602 (1268)
+.+.. ..+...||||||+|.+. +..+.+|||+||.
T Consensus 283 A~~nV--ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 283 AEYNV--EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccCCH--HHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcc
Confidence 33322 24567799999999986 3458999999984
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.2e-06 Score=91.61 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=85.5
Q ss_pred hhhcCCCCCccccCcH---HHHHHHHHHHHc----CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 000818 462 SQKYKPIFFDELIGQN---IVVQSLVNTISR----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534 (1268)
Q Consensus 462 ~eKYRP~tFdDLVGQe---~vv~tLk~aIks----gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC 534 (1268)
..+|+-.+|+.++..+ .++..+.+.+.. ......++|+|++|+|||++|.++++++...
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-------------- 141 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK-------------- 141 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc--------------
Confidence 3567778888876332 233333333331 2223469999999999999999999998421
Q ss_pred cccccCCCccEEEEcCCCCcChHHH------------HHHHHHHHcCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHH
Q 000818 535 NDFISGKSRNFMEVDGTNKKGLDRV------------RYILKHLSAGLPSASPRFKVFVIDECH--LLPSKTWLAFLKFL 600 (1268)
Q Consensus 535 ~~i~sG~s~dfIEIDaSs~~gId~I------------ReLIEea~~~pp~~~g~~KVIIIDEaD--~LS~ea~naLLK~L 600 (1268)
+..++.++..+. +..+ .++++.+. ...||||||++ ..+...+..|..+|
T Consensus 142 -------~~~v~~~~~~~l--l~~i~~~~~~~~~~~~~~~~~~l~--------~~dlLviDDlg~e~~t~~~~~~l~~ii 204 (268)
T PRK08116 142 -------GVPVIFVNFPQL--LNRIKSTYKSSGKEDENEIIRSLV--------NADLLILDDLGAERDTEWAREKVYNII 204 (268)
T ss_pred -------CCeEEEEEHHHH--HHHHHHHHhccccccHHHHHHHhc--------CCCEEEEecccCCCCCHHHHHHHHHHH
Confidence 123444443220 1111 12333332 33499999995 45666667777777
Q ss_pred cCC-CCcEEEEEEeCCCC-C----cchhhhcc----eeEEEecCCC
Q 000818 601 EEP-PQRVVFIFITTDID-N----VPRSIQSR----CQKYLFNKIK 636 (1268)
Q Consensus 601 Eep-p~~vVfILaTn~~e-K----L~pAL~SR----cq~I~F~pLs 636 (1268)
+.. .....+|++||... . +...+.+| |..+.|...+
T Consensus 205 n~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 205 DSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 642 12345778887663 2 35567777 6667776654
|
|
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=89.15 Aligned_cols=126 Identities=21% Similarity=0.312 Sum_probs=80.7
Q ss_pred cccCcHHHHHHHHHHHHc----CC--CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 472 ELIGQNIVVQSLVNTISR----GR--IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIks----gR--i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
-|.||.-+++.+.++|+. .. -+-++=|+|++||||...+++||+.+...... ..|...+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------S~~V~~fv------ 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------SPFVHHFV------ 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------chhHHHhh------
Confidence 367888777777777663 22 23467799999999999999999998532211 11111100
Q ss_pred EEEcCCCCcChHHHHH-----HHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-------CcEEEEEEe
Q 000818 546 MEVDGTNKKGLDRVRY-----ILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-------QRVVFIFIT 613 (1268)
Q Consensus 546 IEIDaSs~~gId~IRe-----LIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-------~~vVfILaT 613 (1268)
-..+-.....+++.+. +.+.+. ...+.++|+||+|+|.+...++|..+|+..| ...+|||.+
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLS 222 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQ------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLS 222 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHH------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEc
Confidence 0111122223443322 333333 3456699999999999999999999998554 468899998
Q ss_pred CCCC
Q 000818 614 TDID 617 (1268)
Q Consensus 614 n~~e 617 (1268)
|.--
T Consensus 223 N~gg 226 (344)
T KOG2170|consen 223 NAGG 226 (344)
T ss_pred CCcc
Confidence 7654
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=97.18 Aligned_cols=166 Identities=21% Similarity=0.294 Sum_probs=111.3
Q ss_pred ccCcHHHHHHHHHHHHc--------CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 473 LIGQNIVVQSLVNTISR--------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks--------gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
.-+++..+..+.+.+.- -++.+.+||+|+||+|||++++++|+++ +..
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------------------------g~h 458 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------------------------GLH 458 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------------------------CCc
Confidence 34555555555555432 2455789999999999999999999999 678
Q ss_pred EEEEcCCCC------cChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH--------HHHHHHHHc--C---CCC
Q 000818 545 FMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT--------WLAFLKFLE--E---PPQ 605 (1268)
Q Consensus 545 fIEIDaSs~------~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea--------~naLLK~LE--e---pp~ 605 (1268)
++++++.+. .........+..+....+ -||||..+|.|..+. ...+...|. . ...
T Consensus 459 ~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p------avifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~ 532 (953)
T KOG0736|consen 459 LLEVDCYELVAESASHTETKLQAIFSRARRCSP------AVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCP 532 (953)
T ss_pred eEeccHHHHhhcccchhHHHHHHHHHHHhhcCc------eEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCC
Confidence 888876431 112234555666654443 388888887764221 222222222 2 235
Q ss_pred cEEEEEEeCCCCCcchhhhcceeE-EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Q 000818 606 RVVFIFITTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG 669 (1268)
Q Consensus 606 ~vVfILaTn~~eKL~pAL~SRcq~-I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G 669 (1268)
+++||.+|+..+.+++.|++-+.. |.+..++.++...||+..+....+. .+.-+.-++..+.|
T Consensus 533 ~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 533 PVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSG 596 (953)
T ss_pred ceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCC
Confidence 788999999999999999998754 9999999999999999988776532 12233445555544
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.1e-05 Score=92.30 Aligned_cols=200 Identities=13% Similarity=0.056 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHcC-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcC--CC
Q 000818 476 QNIVVQSLVNTISRG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG--TN 552 (1268)
Q Consensus 476 Qe~vv~tLk~aIksg-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDa--Ss 552 (1268)
|+.++..|.-..-.. .+ ..+||.|++||+|+++++.|+..|-. ...|+.+-. +.
T Consensus 8 ~~~~~~Al~l~av~p~~~-gGv~i~g~~G~~ks~~~r~l~~llp~----------------------~~p~r~~p~~~t~ 64 (584)
T PRK13406 8 WADAALAAALLAVDPAGL-GGVVLRARAGPVRDRWLAALRALLPA----------------------GTPLRRLPPGIAD 64 (584)
T ss_pred HHHHHHHHHHhCcCcccc-ceEEEEcCCCcHHHHHHHHHHHhcCC----------------------CCCcccCCCCCcH
Confidence 556655544333333 43 57899999999999999999988721 123333321 11
Q ss_pred C--cChHHHHHHHHHHH--cCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-------------CCcEEEEEEeC
Q 000818 553 K--KGLDRVRYILKHLS--AGLP-SASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------------PQRVVFIFITT 614 (1268)
Q Consensus 553 ~--~gId~IReLIEea~--~~pp-~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------------p~~vVfILaTn 614 (1268)
. .|--+|..-+..=. ..+. ...++..|+||||+..+....+++|+..|++. |..+.+|. |.
T Consensus 65 ~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIa-t~ 143 (584)
T PRK13406 65 DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVA-LD 143 (584)
T ss_pred HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEe-cC
Confidence 0 01111222121101 1111 13466789999999999999999999999975 23333333 32
Q ss_pred CC----CCcchhhhcceeE-EEecCCCHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHHc---CC-CHHHHHHHH
Q 000818 615 DI----DNVPRSIQSRCQK-YLFNKIKDGDIV-------ARLRKISAEENLNVEPDALDLIALNA---DG-SLRDAETML 678 (1268)
Q Consensus 615 ~~----eKL~pAL~SRcq~-I~F~pLs~eEI~-------~iL~kiakkEgi~Id~dALelLA~~S---~G-DLRdAinlL 678 (1268)
+. ..|+++++.|+.. +.+..+...+.. .++.....-.++.++++.+.+|+..+ +- ++|..+.++
T Consensus 144 ~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~ll 223 (584)
T PRK13406 144 EGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLAL 223 (584)
T ss_pred CChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 22 2589999999976 778777655432 12211111147889999999887755 32 667777666
Q ss_pred HHH---HHh-C-CccCHHHHHHHhcc
Q 000818 679 DQL---SLL-G-KRITSSLVNELVGV 699 (1268)
Q Consensus 679 EqL---sll-g-k~IT~edV~eLVG~ 699 (1268)
.-+ +.+ + ..|+.++|.+++..
T Consensus 224 raARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 224 RAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 654 233 2 47899998877743
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.9e-06 Score=92.10 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=83.0
Q ss_pred hhhcCCCCCccccC----cHHHHHHHHHHHHcCC-CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 000818 462 SQKYKPIFFDELIG----QNIVVQSLVNTISRGR-IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 462 ~eKYRP~tFdDLVG----Qe~vv~tLk~aIksgR-i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~ 536 (1268)
...|++.+|+.+.. |..++..+...+..-. ....++|+|++|||||+++.++|.++...
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~---------------- 126 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR---------------- 126 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc----------------
Confidence 46678899999873 3445555555554311 12479999999999999999999998421
Q ss_pred cccCCCccEEEEcCCCCcChHH-----------HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcCC
Q 000818 537 FISGKSRNFMEVDGTNKKGLDR-----------VRYILKHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEEP 603 (1268)
Q Consensus 537 i~sG~s~dfIEIDaSs~~gId~-----------IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEep 603 (1268)
+..++.++.++. +.. ...+++.+. ...||||||++..... ....|..+++..
T Consensus 127 -----g~~v~~it~~~l--~~~l~~~~~~~~~~~~~~l~~l~--------~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 127 -----GKSVLIITVADI--MSAMKDTFSNSETSEEQLLNDLS--------NVDLLVIDEIGVQTESRYEKVIINQIVDRR 191 (244)
T ss_pred -----CCeEEEEEHHHH--HHHHHHHHhhccccHHHHHHHhc--------cCCEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 223444433221 111 112333322 3459999999887533 234566666532
Q ss_pred -CCcEEEEEEeCCCC-----Ccchhhhcce-----eEEEecC
Q 000818 604 -PQRVVFIFITTDID-----NVPRSIQSRC-----QKYLFNK 634 (1268)
Q Consensus 604 -p~~vVfILaTn~~e-----KL~pAL~SRc-----q~I~F~p 634 (1268)
......|++||... .+...+.+|. ..+.|.-
T Consensus 192 y~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~ 233 (244)
T PRK07952 192 SSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNW 233 (244)
T ss_pred HhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeC
Confidence 12355677777653 2444555554 2455653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00051 Score=88.40 Aligned_cols=198 Identities=13% Similarity=0.196 Sum_probs=113.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccC-----CCCCCCCC----cccccc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT-----DQTKPCGY----CRECND 536 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~-----e~~~PCg~----C~sC~~ 536 (1268)
.|..-.++|-.+...+.|.. ..-.+.++++||.|+|||+++..++.......+ .+..|-.+ |..+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~----~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG----ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred CCCCccccCcchHHHHHHhc----ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 36666778888877766643 333478999999999999999998865420000 00011000 000000
Q ss_pred cccCCCccEEEEc-CCCCcC-hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHcCCCCcEEEEEEe
Q 000818 537 FISGKSRNFMEVD-GTNKKG-LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT-WLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 537 i~sG~s~dfIEID-aSs~~g-Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea-~naLLK~LEepp~~vVfILaT 613 (1268)
...+.......+- ...... ...+..++..+.. ....-|||||++|.+.... ...|..++...|.++.+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELAD-----WHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhc-----CCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 0000000000000 000001 1123334444432 1345689999999997554 446666777778888888877
Q ss_pred CCCCCc-chhhhcceeEEEec----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Q 000818 614 TDIDNV-PRSIQSRCQKYLFN----KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAE 675 (1268)
Q Consensus 614 n~~eKL-~pAL~SRcq~I~F~----pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAi 675 (1268)
.....+ ...+.-+.+.+.+. +++.+|+..++... .|..++++.+..|.+.++|.+--+.
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQ 223 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHH
Confidence 654333 22333333344444 88999999888654 3677899999999999999886544
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=88.19 Aligned_cols=216 Identities=13% Similarity=0.154 Sum_probs=122.1
Q ss_pred cCCCCCccccCcHHHHHHHHHHHH----c-CCCCCeEEEEcCCCchHHHHHHHHHHHhhc-------------ccCCC--
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTIS----R-GRIAPVYLFQGPRGTGKTSTAKIFSAALNC-------------VATDQ-- 524 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIk----s-gRi~~ayLL~GPpGTGKTSLARaLAkaLnc-------------e~~e~-- 524 (1268)
-|...|+|++|+++++..|.+.+. . +.-..+++|.||||+|||++|+.||+.+.. ...++
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 456689999999999998887773 1 222368999999999999999999998742 11110
Q ss_pred ----------------CCC-----CCCcccccccc---cCC--CccEEEEcCCC-------------C--------cChH
Q 000818 525 ----------------TKP-----CGYCRECNDFI---SGK--SRNFMEVDGTN-------------K--------KGLD 557 (1268)
Q Consensus 525 ----------------~~P-----Cg~C~sC~~i~---sG~--s~dfIEIDaSs-------------~--------~gId 557 (1268)
+.| -..|+-|.... .|. .+.|+.+..+. . .|.-
T Consensus 150 ~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~v 229 (644)
T PRK15455 150 GLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKV 229 (644)
T ss_pred CCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccce
Confidence 001 11244453221 121 12333332111 1 1111
Q ss_pred HHHHHHHHHHcC-CC-------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----------CCcEEEEEEeCCCC-
Q 000818 558 RVRYILKHLSAG-LP-------SASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQRVVFIFITTDID- 617 (1268)
Q Consensus 558 ~IReLIEea~~~-pp-------~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----------p~~vVfILaTn~~e- 617 (1268)
+++.+..- ... |- ...+.+.++=+=|+-+...+...-||...++. +-+.+||..||+.+
T Consensus 230 di~kl~~y-s~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E~ 308 (644)
T PRK15455 230 DIRKLEHY-AQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESEW 308 (644)
T ss_pred eHHhhhcc-CCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHHH
Confidence 23333222 111 11 11233344434466666666666666655542 23456666666653
Q ss_pred ------CcchhhhcceeEEEecCCCH-HHHHHHHHHHHHhc---CCCCCHHHHHHHHHHc-------CCCHHHHHHHHHH
Q 000818 618 ------NVPRSIQSRCQKYLFNKIKD-GDIVARLRKISAEE---NLNVEPDALDLIALNA-------DGSLRDAETMLDQ 680 (1268)
Q Consensus 618 ------KL~pAL~SRcq~I~F~pLs~-eEI~~iL~kiakkE---gi~Id~dALelLA~~S-------~GDLRdAinlLEq 680 (1268)
+-..+|+.|+.+|.++..-. .+=+++-.+..... +..+.+.+|+.+|..+ .-+ ..++++
T Consensus 309 ~~F~~nk~nEA~~DRi~~V~VPY~lr~~eE~kIYeKll~~s~l~~~hiAPhtle~aA~faVLTRL~~p~~----~~l~~K 384 (644)
T PRK15455 309 QTFRNNKNNEAFLDRIYIVKVPYCLRVSEEIKIYEKLLRNSELAHAPCAPGTLEMLARFSVLSRLKEPEN----SSIYSK 384 (644)
T ss_pred HHHhcCccchhhhceEEEEeCCccCChhHHHHHHHHHhcCccccCCCcCccHHHHHHHHHHHhcCCCCCc----CCHHHH
Confidence 45789999999988765443 23333445555443 6678888887777654 122 457888
Q ss_pred HHHhC
Q 000818 681 LSLLG 685 (1268)
Q Consensus 681 Lsllg 685 (1268)
+-+|.
T Consensus 385 mklYd 389 (644)
T PRK15455 385 MRVYD 389 (644)
T ss_pred HHhhc
Confidence 87774
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.8e-06 Score=79.61 Aligned_cols=104 Identities=24% Similarity=0.345 Sum_probs=60.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHH-HHHHHHHHcCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRV-RYILKHLSAGLPS 572 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~I-ReLIEea~~~pp~ 572 (1268)
.+++++||+|+|||++++.+++.+....... ...+++.++.........+ ..+.+.+......
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIK----------------NHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHC----------------CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhcc----------------CCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc
Confidence 5689999999999999999999984321000 0334555543322211211 2222222211100
Q ss_pred ---------------CCCCcEEEEEeCCCCC-CHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 573 ---------------ASPRFKVFVIDECHLL-PSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 573 ---------------~~g~~KVIIIDEaD~L-S~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
......+|||||+|.| ..+.++.|..++++. .+.||++.+.
T Consensus 69 ~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~--~~~vvl~G~~ 125 (131)
T PF13401_consen 69 RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNES--NIKVVLVGTP 125 (131)
T ss_dssp TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSC--BEEEEEEESS
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCC--CCeEEEEECh
Confidence 0112259999999999 888889988888844 6777776654
|
|
| >PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=78.62 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhh---------------------hcccCCCHH
Q 000818 705 LLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------------------IGGRSLTEA 763 (1268)
Q Consensus 705 ifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~---------------------~~~r~ls~~ 763 (1268)
.|+|+|+++.|+...++++++.|...|++|..|+..|.+.++.++..+.. ...+.+++.
T Consensus 1 pF~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~~~l~~~~~~~rIW~~Rq~l~~~Al~Rl 80 (125)
T PF14840_consen 1 PFQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQQPLQQLFKQLRIWQKRQPLYQQALQRL 80 (125)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS
T ss_pred CCcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHhHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999988766543 222344557
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC--CchHHHHHHHHHccCCC
Q 000818 764 ELERLKHALKLLSEAEKQLRLSS--ERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 764 sle~L~raL~iLsEaDkqLK~S~--d~rl~LE~aLL~L~~lp 803 (1268)
+...|.+++..+..+|..+|... ++...|+.+.+.||+-|
T Consensus 81 s~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc~~~ 122 (125)
T PF14840_consen 81 SLQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLCGKP 122 (125)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCc
Confidence 77889999999999999999876 55566777888888743
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00021 Score=87.67 Aligned_cols=189 Identities=19% Similarity=0.236 Sum_probs=118.8
Q ss_pred CcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC
Q 000818 475 GQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK 553 (1268)
Q Consensus 475 GQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~ 553 (1268)
+....++++.+.+.+ ....-.+|++|++||||..++|+|-+.-. ....|+.+|++-.
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~----------------------~~gpfvAvNCaAi 374 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE----------------------AAGPFVAVNCAAI 374 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc----------------------ccCCeEEEEeccc
Confidence 455555555444432 11223589999999999999999965531 1346666766542
Q ss_pred cChHHHHHHHHHH--HcCCC-------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC----------CCcEE
Q 000818 554 KGLDRVRYILKHL--SAGLP-------------SASPRFKVFVIDECHLLPSKTWLAFLKFLEEP----------PQRVV 608 (1268)
Q Consensus 554 ~gId~IReLIEea--~~~pp-------------~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep----------p~~vV 608 (1268)
. ..+++.. .+.+. ........+|+||+..|.-..+.+||++|++. +.++.
T Consensus 375 p-----~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir 449 (606)
T COG3284 375 P-----EALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR 449 (606)
T ss_pred h-----HHhhhHHHhccCccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEE
Confidence 1 1222211 11111 12455668999999999999999999999874 23566
Q ss_pred EEEEeCCCC-------CcchhhhcceeE--EEecCCCH-HHHHHHHHHHHHhc---CCCCCHHHHHHHHHHc-CCCHHHH
Q 000818 609 FIFITTDID-------NVPRSIQSRCQK--YLFNKIKD-GDIVARLRKISAEE---NLNVEPDALDLIALNA-DGSLRDA 674 (1268)
Q Consensus 609 fILaTn~~e-------KL~pAL~SRcq~--I~F~pLs~-eEI~~iL~kiakkE---gi~Id~dALelLA~~S-~GDLRdA 674 (1268)
+|.+|+.+= ++-..|.=|... |.++|+.+ .+....|.++..++ .++++++++..|..+. .||+|.+
T Consensus 450 vi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel 529 (606)
T COG3284 450 VIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIREL 529 (606)
T ss_pred EEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHH
Confidence 677776541 344455555544 44444432 22333344444443 5789999998877755 9999999
Q ss_pred HHHHHHHHHh--CCccCH
Q 000818 675 ETMLDQLSLL--GKRITS 690 (1268)
Q Consensus 675 inlLEqLsll--gk~IT~ 690 (1268)
.|.|+.++++ ++.|..
T Consensus 530 ~~v~~~~~~l~~~g~~~~ 547 (606)
T COG3284 530 DNVIERLAALSDGGRIRV 547 (606)
T ss_pred HHHHHHHHHcCCCCeeEc
Confidence 9999999876 344443
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.4e-05 Score=88.22 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCC
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~ 572 (1268)
...++|+||+|+|||+++.++|+++.... +..++.+...+. ++.+...++.+.... .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~--------------------g~~v~y~~~~~l--~~~l~~~~~~~~~~~-~ 173 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK--------------------GVPVLYFPFVEG--FGDLKDDFDLLEAKL-N 173 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc--------------------CceEEEEEHHHH--HHHHHHHHHHHHHHH-H
Confidence 46799999999999999999999983210 234455543221 222222111110000 0
Q ss_pred CCCCcEEEEEeCCCC-------CCHHHHHHHHHHHcCCC-CcEEEEEEeCCC
Q 000818 573 ASPRFKVFVIDECHL-------LPSKTWLAFLKFLEEPP-QRVVFIFITTDI 616 (1268)
Q Consensus 573 ~~g~~KVIIIDEaD~-------LS~ea~naLLK~LEepp-~~vVfILaTn~~ 616 (1268)
......||||||++. ++.-....|..+++... ....+|++||..
T Consensus 174 ~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 174 RMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred HhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 012345999999954 33333445666655321 123457777765
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=88.59 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=59.9
Q ss_pred HHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHH------
Q 000818 485 NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDR------ 558 (1268)
Q Consensus 485 ~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~------ 558 (1268)
.++..+ ..++|+||+|||||++|.+++.++... +..++.+...+. ++.
T Consensus 101 ~~~~~~---~nlll~Gp~GtGKTHLa~Aia~~a~~~---------------------g~~v~f~~~~~L--~~~l~~a~~ 154 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLALIEN---------------------GWRVLFTRTTDL--VQKLQVARR 154 (269)
T ss_pred HHHhcC---ceEEEEecCCCcHHHHHHHHHHHHHHc---------------------CCceeeeeHHHH--HHHHHHHHh
Confidence 566544 469999999999999999999987311 223344432210 111
Q ss_pred ---HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 559 ---VRYILKHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 559 ---IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
...+++.+. ...++||||++.+.. .....|..+++..-....+|++||.+
T Consensus 155 ~~~~~~~l~~l~--------~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 155 ELQLESAIAKLD--------KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCcHHHHHHHHh--------cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 112233322 344999999998753 34556777776432234577888766
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.3e-05 Score=90.12 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=40.4
Q ss_pred hhhcCCCCCccccCc----HHHHHHHHHHHHc---CCCCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 462 SQKYKPIFFDELIGQ----NIVVQSLVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 462 ~eKYRP~tFdDLVGQ----e~vv~tLk~aIks---gRi~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
...+...+|+++... ..+......++.. +.....++|+||+|||||+++.++|+++.
T Consensus 118 p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 118 PKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556788888743 2334444455553 22346899999999999999999999983
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00042 Score=85.29 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=98.0
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCC-----------CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCC
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRI-----------APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTK 526 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi-----------~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~ 526 (1268)
+.-|++-..| .|.|++.+++.|.-++-.|.- .-++||+|.|||||+.+.+.+++-+-.
T Consensus 420 y~lLa~SiAP----sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR------- 488 (804)
T KOG0478|consen 420 YELLARSIAP----SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR------- 488 (804)
T ss_pred HHHHHHhhch----hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc-------
Confidence 3445555566 567899999888877764421 136899999999999999999887621
Q ss_pred CCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcC----
Q 000818 527 PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE---- 602 (1268)
Q Consensus 527 PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEe---- 602 (1268)
| .+.+|.+..-+-+.+.-.+. .+-++++-+. .....++..|.-|||+|+|+..+.+.|+..||.
T Consensus 489 --g------~yTSGkGsSavGLTayVtrd-~dtkqlVLes---GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvS 556 (804)
T KOG0478|consen 489 --G------VYTSGKGSSAVGLTAYVTKD-PDTRQLVLES---GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLS 556 (804)
T ss_pred --c------eeecCCccchhcceeeEEec-Cccceeeeec---CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhh
Confidence 1 12222221111111110000 0112222221 122457788999999999999999999999984
Q ss_pred ---------CCCcEEEEEEeCCCC-------------CcchhhhcceeEEE--ecCCCH
Q 000818 603 ---------PPQRVVFIFITTDID-------------NVPRSIQSRCQKYL--FNKIKD 637 (1268)
Q Consensus 603 ---------pp~~vVfILaTn~~e-------------KL~pAL~SRcq~I~--F~pLs~ 637 (1268)
.+.++.+|.++|-.. .|+++|+|||..|. |.++++
T Consensus 557 IAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE 615 (804)
T KOG0478|consen 557 IAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDE 615 (804)
T ss_pred HhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcch
Confidence 245566666666221 37999999997744 555554
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=89.62 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=55.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChH---------HHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLD---------RVRYILK 564 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId---------~IReLIE 564 (1268)
..++|+||+|||||++|.+++.++... +..++.+.... -++ .+...+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~---------------------g~~v~f~t~~~--l~~~l~~~~~~~~~~~~l~ 155 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA---------------------GHRVLFATAAQ--WVARLAAAHHAGRLQAELV 155 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC---------------------CCchhhhhHHH--HHHHHHHHHhcCcHHHHHH
Confidence 579999999999999999999887211 11111111110 001 1112222
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 565 HLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 565 ea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
.+ ..+.||||||++.+. ....+.|..+++..-....+|++||.+
T Consensus 156 ~l--------~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 156 KL--------GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred Hh--------ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 22 234599999999874 555667777775432234578888876
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00076 Score=74.92 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcCh
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGL 556 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gI 556 (1268)
+.....|..++... -.-.++||.|||||.+++.||+.| +..++.+++.+....
T Consensus 19 ~r~~~~l~~al~~~---~~~~~~GpagtGKtetik~La~~l------------------------G~~~~vfnc~~~~~~ 71 (231)
T PF12774_consen 19 DRCFLTLTQALSLN---LGGALSGPAGTGKTETIKDLARAL------------------------GRFVVVFNCSEQMDY 71 (231)
T ss_dssp HHHHHHHHHHHCTT---TEEEEESSTTSSHHHHHHHHHHCT------------------------T--EEEEETTSSS-H
T ss_pred HHHHHHHHHHhccC---CCCCCcCCCCCCchhHHHHHHHHh------------------------CCeEEEecccccccH
Confidence 34455666666544 234689999999999999999998 567888999887778
Q ss_pred HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHH-------HcCCC-------------CcEEEEEEeCCC
Q 000818 557 DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKF-------LEEPP-------------QRVVFIFITTDI 616 (1268)
Q Consensus 557 d~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~-------LEepp-------------~~vVfILaTn~~ 616 (1268)
..+..++.-+.... --+.+||++.|..+....+-.. +.... +++.++++.|..
T Consensus 72 ~~l~ril~G~~~~G-------aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~ 144 (231)
T PF12774_consen 72 QSLSRILKGLAQSG-------AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPG 144 (231)
T ss_dssp HHHHHHHHHHHHHT--------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-
T ss_pred HHHHHHHHHHhhcC-------chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccc
Confidence 88888887766533 2689999999998775544332 22221 233333344322
Q ss_pred ----CCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCC
Q 000818 617 ----DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN 654 (1268)
Q Consensus 617 ----eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~ 654 (1268)
..||..|+.-+..+.+..|+...|.+++ +-..|..
T Consensus 145 y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 145 YAGRSELPENLKALFRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp CCCC--S-HHHCTTEEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred cCCcccCCHhHHHHhheeEEeCCCHHHHHHHH---HHHcCch
Confidence 3699999999999999999877666654 3345553
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.2e-05 Score=75.17 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCC-CCCCcccccccccCCCc-cEEEE-cCCCCcChHHHHHHHHHHHcCCC
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTK-PCGYCRECNDFISGKSR-NFMEV-DGTNKKGLDRVRYILKHLSAGLP 571 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~-PCg~C~sC~~i~sG~s~-dfIEI-DaSs~~gId~IReLIEea~~~pp 571 (1268)
.++++|++|+|||++++.++..+......... +......+..+...... .+..+ ..........+...+..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--- 78 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLE--- 78 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHH---
Confidence 58999999999999999999998543322211 11111111111110000 00000 00000000111111111111
Q ss_pred CCCCCcEEEEEeCCCCCCHHHH--------HHHHHHHcC-CCCcEEEEEEeCCCCC-cchhhhcceeEEEecCCCHHHHH
Q 000818 572 SASPRFKVFVIDECHLLPSKTW--------LAFLKFLEE-PPQRVVFIFITTDIDN-VPRSIQSRCQKYLFNKIKDGDIV 641 (1268)
Q Consensus 572 ~~~g~~KVIIIDEaD~LS~ea~--------naLLK~LEe-pp~~vVfILaTn~~eK-L~pAL~SRcq~I~F~pLs~eEI~ 641 (1268)
....-+||||.+|.+..... ..|..++.. .+.++.+|+++..... -..........+...+++.+++.
T Consensus 79 --~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 79 --KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred --cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHH
Confidence 23455889999999875322 234455555 3456777777654321 12333333367899999999999
Q ss_pred HHHHHHHH
Q 000818 642 ARLRKISA 649 (1268)
Q Consensus 642 ~iL~kiak 649 (1268)
+++++.+.
T Consensus 157 ~~~~~~f~ 164 (166)
T PF05729_consen 157 QYLRKYFS 164 (166)
T ss_pred HHHHHHhh
Confidence 99988764
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.7e-06 Score=103.34 Aligned_cols=50 Identities=34% Similarity=0.690 Sum_probs=46.0
Q ss_pred hhhhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHH
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509 (1268)
Q Consensus 459 r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSL 509 (1268)
.+|.+||||++|+|||||+++++.|++++..++++| ++|+||||+||+.+
T Consensus 7 ~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h-~l~~g~~g~~~cl~ 56 (846)
T PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKCLT 56 (846)
T ss_pred ccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCe-EEEECCCCCCcccc
Confidence 489999999999999999999999999999999866 56999999999654
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=74.56 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC-cccccccccCCCccEEEEcCC----------CC-------c
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY-CRECNDFISGKSRNFMEVDGT----------NK-------K 554 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~-C~sC~~i~sG~s~dfIEIDaS----------s~-------~ 554 (1268)
+.-++++|+||+||||++..++..|.... .+-+|+ |+..+.-....++.++.++.. +. .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 34579999999999999999999985432 222332 333332222234455544311 00 0
Q ss_pred ChHHHHHHH-HHHHcCCCCCCCCcEEEEEeCCCCC---CHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEE
Q 000818 555 GLDRVRYIL-KHLSAGLPSASPRFKVFVIDECHLL---PSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630 (1268)
Q Consensus 555 gId~IReLI-Eea~~~pp~~~g~~KVIIIDEaD~L---S~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I 630 (1268)
.++.+..+. ..+..+ .....||||||+..| +.....++-.+|....+ +++.+--+..+-+...++++..++
T Consensus 82 ~v~~le~i~~~al~rA----~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v~ 156 (179)
T COG1618 82 NVEGLEEIAIPALRRA----LEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGVY 156 (179)
T ss_pred eHHHHHHHhHHHHHHH----hhcCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCEE
Confidence 123333222 222211 122469999999876 45556677777766533 333332233345777888888887
Q ss_pred EecCCCHHHHHHHHHHHH
Q 000818 631 LFNKIKDGDIVARLRKIS 648 (1268)
Q Consensus 631 ~F~pLs~eEI~~iL~kia 648 (1268)
.| ++++..-.++.+++
T Consensus 157 v~--lt~~NR~~i~~~Il 172 (179)
T COG1618 157 VF--LTPENRNRILNEIL 172 (179)
T ss_pred EE--EccchhhHHHHHHH
Confidence 75 44433334444443
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00046 Score=82.28 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=69.2
Q ss_pred hhcCCCCCccccCcHHHHHHHH---HHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc
Q 000818 463 QKYKPIFFDELIGQNIVVQSLV---NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk---~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s 539 (1268)
--|.|..|++ ...+..|. .++..+ -++++.||+|||||+++.+++....|..
T Consensus 183 iG~~P~~~~~----r~k~~~L~rl~~fve~~---~Nli~lGp~GTGKThla~~l~~~~a~~s------------------ 237 (449)
T TIGR02688 183 IGYEPEGFEA----RQKLLLLARLLPLVEPN---YNLIELGPKGTGKSYIYNNLSPYVILIS------------------ 237 (449)
T ss_pred cCCCcccCCh----HHHHHHHHhhHHHHhcC---CcEEEECCCCCCHHHHHHHHhHHHHHHc------------------
Confidence 4588988863 33333343 455554 4689999999999999999887732211
Q ss_pred CCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC----HHHHHHHHHHHcCC---------CCc
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP----SKTWLAFLKFLEEP---------PQR 606 (1268)
Q Consensus 540 G~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS----~ea~naLLK~LEep---------p~~ 606 (1268)
| .... +..|+.++.....-.-+.+.+|||||+..+. .+....|..+|+.. ..+
T Consensus 238 G-----------~f~T---~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~ 303 (449)
T TIGR02688 238 G-----------GTIT---VAKLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSD 303 (449)
T ss_pred C-----------CcCc---HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeee
Confidence 1 0001 1122222221111124677899999999864 33557777778753 245
Q ss_pred EEEEEEeCCC
Q 000818 607 VVFIFITTDI 616 (1268)
Q Consensus 607 vVfILaTn~~ 616 (1268)
..+||..|-.
T Consensus 304 as~vfvGNi~ 313 (449)
T TIGR02688 304 ASFVFLGNVP 313 (449)
T ss_pred eEEEEEcccC
Confidence 6677776654
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=84.46 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHH-----------H
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRY-----------I 562 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IRe-----------L 562 (1268)
..++|+||+|||||++|.++|+++... +..++.+.+.+. ++.+.. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---------------------g~~V~y~t~~~l--~~~l~~~~~~~~~~~~~~ 240 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---------------------GKSVIYRTADEL--IEILREIRFNNDKELEEV 240 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---------------------CCeEEEEEHHHH--HHHHHHHHhccchhHHHH
Confidence 679999999999999999999998421 335555554321 111111 1
Q ss_pred HHHHHcCCCCCCCCcEEEEEeCCCCC--CHHHHHHHHHHHcCCC-CcEEEEEEeCCCC-----Ccchhhhcce----eEE
Q 000818 563 LKHLSAGLPSASPRFKVFVIDECHLL--PSKTWLAFLKFLEEPP-QRVVFIFITTDID-----NVPRSIQSRC----QKY 630 (1268)
Q Consensus 563 IEea~~~pp~~~g~~KVIIIDEaD~L--S~ea~naLLK~LEepp-~~vVfILaTn~~e-----KL~pAL~SRc----q~I 630 (1268)
++.+ ....++||||++.. +......|..+++..- ....+|++||... .+.+.|.+|. .++
T Consensus 241 ~~~l--------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i 312 (329)
T PRK06835 241 YDLL--------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLL 312 (329)
T ss_pred HHHh--------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEE
Confidence 2222 23459999999765 4455667777776432 1244677887653 2345566664 445
Q ss_pred Eec
Q 000818 631 LFN 633 (1268)
Q Consensus 631 ~F~ 633 (1268)
.|.
T Consensus 313 ~~~ 315 (329)
T PRK06835 313 KFY 315 (329)
T ss_pred Eec
Confidence 554
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=78.84 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=73.0
Q ss_pred HHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHH
Q 000818 482 SLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRY 561 (1268)
Q Consensus 482 tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IRe 561 (1268)
.+.+.+..+.+ ..++|+|+||||||++|.+++.++.-.......+ -. .... ....+.++. +.+..
T Consensus 7 ~~~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~---~~---~~d~--~~~~~fid~------~~Ll~ 71 (226)
T PHA00729 7 KIVSAYNNNGF-VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK---DD---AWQY--VQNSYFFEL------PDALE 71 (226)
T ss_pred HHHHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHHHHhhcccccch---hh---HHhc--CCcEEEEEH------HHHHH
Confidence 34455566665 5799999999999999999999974111000000 00 0000 112333332 23333
Q ss_pred HHHHHHcCCCCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHH
Q 000818 562 ILKHLSAGLPSASPRFKVFVIDECHLLPSK-TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640 (1268)
Q Consensus 562 LIEea~~~pp~~~g~~KVIIIDEaD~LS~e-a~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI 640 (1268)
.+..+... ..+..++||||+..-... .|.. +. + ..-..+.++|++|+..+.|.+++++++
T Consensus 72 ~L~~a~~~----~~~~dlLIIDd~G~~~~~~~wh~-----~~------~----~~yf~L~~aLrSR~~l~il~~ls~edL 132 (226)
T PHA00729 72 KIQDAIDN----DYRIPLIIFDDAGIWLSKYVWYE-----DY------M----KTFYKIYALIRTRVSAVIFTTPSPEDL 132 (226)
T ss_pred HHHHHHhc----CCCCCEEEEeCCchhhcccchhh-----hc------c----chHHHHHHHHHhhCcEEEEecCCHHHH
Confidence 33333221 123358999997543211 1111 00 0 111236788899999999999999999
Q ss_pred HHHHHH
Q 000818 641 VARLRK 646 (1268)
Q Consensus 641 ~~iL~k 646 (1268)
...|+.
T Consensus 133 ~~~Lr~ 138 (226)
T PHA00729 133 AFYLRE 138 (226)
T ss_pred HHHHHh
Confidence 888876
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.9e-05 Score=80.85 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC-------cChHHHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK-------KGLDRVRYILKH 565 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~-------~gId~IReLIEe 565 (1268)
...++|+||+|||||++|-++++++.. . +..++.++..+. ..-.....+++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-------------------~--g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~ 105 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-------------------K--GYSVLFITASDLLDELKQSRSDGSYEELLKR 105 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-------------------T--T--EEEEEHHHHHHHHHCCHCCTTHCHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-------------------C--CcceeEeecCceeccccccccccchhhhcCc
Confidence 367999999999999999999998732 1 223333332110 000112344555
Q ss_pred HHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 566 LSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 566 a~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+... .++||||+.... ....+.|..+|+..-.+...|++||..
T Consensus 106 l~~~--------dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 106 LKRV--------DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp HHTS--------SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cccc--------cEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 5433 389999998754 334555666665322233567788765
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00031 Score=84.31 Aligned_cols=137 Identities=21% Similarity=0.308 Sum_probs=82.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc-CCCCc------ChHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD-GTNKK------GLDRVRYILKHL 566 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID-aSs~~------gId~IReLIEea 566 (1268)
-.+||.||+|+|||++|-.+|..- .++|+.|= +.+.. ....|+.+++.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S------------------------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSS------------------------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDA 594 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhc------------------------CCCeEEEeChHHccCccHHHHHHHHHHHHHHh
Confidence 468999999999999999988664 45666653 22222 245677788887
Q ss_pred HcCCCCCCCCcEEEEEeCCCCCC------HH----HHHHHHHHHcCCCC--cEEEEEEeCCCCCcch--hhhcce-eEEE
Q 000818 567 SAGLPSASPRFKVFVIDECHLLP------SK----TWLAFLKFLEEPPQ--RVVFIFITTDIDNVPR--SIQSRC-QKYL 631 (1268)
Q Consensus 567 ~~~pp~~~g~~KVIIIDEaD~LS------~e----a~naLLK~LEepp~--~vVfILaTn~~eKL~p--AL~SRc-q~I~ 631 (1268)
+..+ -.|||||+++.|. +. ...+|+=+|.+.|+ +-.||++|+..-.++. .|..-+ ..|+
T Consensus 595 YkS~------lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 595 YKSP------LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred hcCc------ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 6544 3499999999873 22 34455555555443 4677787775543222 122222 2367
Q ss_pred ecCCCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000818 632 FNKIKD-GDIVARLRKISAEENLNVEPDALDLIAL 665 (1268)
Q Consensus 632 F~pLs~-eEI~~iL~kiakkEgi~Id~dALelLA~ 665 (1268)
.+.+.. +++.++|.. .++ +.++.+..++.
T Consensus 669 Vpnl~~~~~~~~vl~~----~n~-fsd~~~~~~~~ 698 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEE----LNI-FSDDEVRAIAE 698 (744)
T ss_pred cCccCchHHHHHHHHH----ccC-CCcchhHHHHH
Confidence 777765 566666643 222 44555544443
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=82.66 Aligned_cols=142 Identities=14% Similarity=0.184 Sum_probs=83.0
Q ss_pred HHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHH
Q 000818 485 NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK 564 (1268)
Q Consensus 485 ~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIE 564 (1268)
.++..+ ..+||+||+|||||.+++.+.+.+.. ...-+..++-+..+....+..+++
T Consensus 28 ~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l~~---------------------~~~~~~~~~~s~~Tts~~~q~~ie 83 (272)
T PF12775_consen 28 LLLSNG---RPVLLVGPSGTGKTSLIQNFLSSLDS---------------------DKYLVITINFSAQTTSNQLQKIIE 83 (272)
T ss_dssp HHHHCT---EEEEEESSTTSSHHHHHHHHHHCSTT---------------------CCEEEEEEES-TTHHHHHHHHCCC
T ss_pred HHHHcC---CcEEEECCCCCchhHHHHhhhccCCc---------------------cccceeEeeccCCCCHHHHHHHHh
Confidence 344444 36899999999999999987665521 011233444443333344444443
Q ss_pred HHHcCC-----CCCCCCcEEEEEeCCCCCCHH------HHHHHHHHHcCC------------CCcEEEEEEeCCC---CC
Q 000818 565 HLSAGL-----PSASPRFKVFVIDECHLLPSK------TWLAFLKFLEEP------------PQRVVFIFITTDI---DN 618 (1268)
Q Consensus 565 ea~~~p-----p~~~g~~KVIIIDEaD~LS~e------a~naLLK~LEep------------p~~vVfILaTn~~---eK 618 (1268)
.-.... .+..+++-|+||||+++-..+ ..+.|+++++.. -.++.||.+++.. ..
T Consensus 84 ~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~ 163 (272)
T PF12775_consen 84 SKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNP 163 (272)
T ss_dssp TTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--S
T ss_pred hcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCC
Confidence 321100 012456669999999986543 245566666532 1467777776643 24
Q ss_pred cchhhhcceeEEEecCCCHHHHHHHHHHHHHh
Q 000818 619 VPRSIQSRCQKYLFNKIKDGDIVARLRKISAE 650 (1268)
Q Consensus 619 L~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk 650 (1268)
+.+.+.+.+.++.+..++.+.+..+...++..
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHH
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhh
Confidence 78899999999999999999988887776653
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0025 Score=72.14 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=115.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCC--
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP-- 571 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp-- 571 (1268)
..+||.||.|.||+.+|+.+-..-... ++ .+..|+|+|++..+|-..+..++..+.....
T Consensus 209 ~p~ll~gptgagksflarriyelk~ar--------------hq----~sg~fvevncatlrgd~amsalfghvkgaftga 270 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQAR--------------HQ----FSGAFVEVNCATLRGDTAMSALFGHVKGAFTGA 270 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHH--------------Hh----cCCceEEEeeeeecCchHHHHHHhhhccccccc
Confidence 458999999999999999885432111 11 2568999999987776677777766643211
Q ss_pred -------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCC-----------CcEEEEEEeCCC-------CCcchhhhcc
Q 000818 572 -------SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP-----------QRVVFIFITTDI-------DNVPRSIQSR 626 (1268)
Q Consensus 572 -------~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp-----------~~vVfILaTn~~-------eKL~pAL~SR 626 (1268)
...+...++|+||+..|..+.+..|||.+|+.. ...-+|.-|-.. -.+-..+..|
T Consensus 271 ~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ar 350 (531)
T COG4650 271 RESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 (531)
T ss_pred hhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHh
Confidence 123566799999999999999999999999741 111112211110 0223345555
Q ss_pred eeEEEecCCCH----HH----HHHHHHHHHHhcC--CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh--CCc
Q 000818 627 CQKYLFNKIKD----GD----IVARLRKISAEEN--LNVEPDALDLIALNA-------DGSLRDAETMLDQLSLL--GKR 687 (1268)
Q Consensus 627 cq~I~F~pLs~----eE----I~~iL~kiakkEg--i~Id~dALelLA~~S-------~GDLRdAinlLEqLsll--gk~ 687 (1268)
.....|..|.. ++ +-.-|.+.+...| +.+..+|-..-...+ .||.|.+-..+..++.+ +++
T Consensus 351 inlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~gr 430 (531)
T COG4650 351 INLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGR 430 (531)
T ss_pred hheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCc
Confidence 55555544322 11 2222344444433 445555543333322 78999988888777655 578
Q ss_pred cCHHHHHHHhc
Q 000818 688 ITSSLVNELVG 698 (1268)
Q Consensus 688 IT~edV~eLVG 698 (1268)
||.+.|++-++
T Consensus 431 it~~~ve~ei~ 441 (531)
T COG4650 431 ITLDVVEDEIN 441 (531)
T ss_pred eeHHHHHHHHH
Confidence 99999876554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0012 Score=88.34 Aligned_cols=195 Identities=16% Similarity=0.088 Sum_probs=102.9
Q ss_pred CCCCccccCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE
Q 000818 467 PIFFDELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df 545 (1268)
+..|+++||.+..++.|..++.- ..-...+-|+|+.|+||||+|++++..+...... .|... ..+.. .....
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~---~~~v~-~~~~~ 252 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFID---RAFIS-KSMEI 252 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEee---ccccc-cchhh
Confidence 45789999999999999888752 2223678999999999999999999887432110 00000 00000 00000
Q ss_pred EE-EcCCCCcC-hHHHHHHHHHHHcCC-----------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEE
Q 000818 546 ME-VDGTNKKG-LDRVRYILKHLSAGL-----------PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFI 612 (1268)
Q Consensus 546 IE-IDaSs~~g-Id~IReLIEea~~~p-----------p~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILa 612 (1268)
+. .+...... ......++..+.... .....++-+||+|+++. ...++.|....+-......+|++
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEE
Confidence 00 00000000 000011111111000 00123455788899874 34556665544433345667777
Q ss_pred eCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHH
Q 000818 613 TTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE--PDALDLIALNADGSLR 672 (1268)
Q Consensus 613 Tn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id--~dALelLA~~S~GDLR 672 (1268)
|.+.+-+ ... .-..++....++.++..+.+...|-+....-+ .+....|+++++|-+-
T Consensus 331 Trd~~vl-~~~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 331 TKDKHFL-RAH-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred eCcHHHH-Hhc-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH
Confidence 7654322 111 01246888899998888888777644322111 1344567788888653
|
syringae 6; Provisional |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.5e-05 Score=78.85 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=34.0
Q ss_pred cccCcHHHHHHHHHHH--HcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcc
Q 000818 472 ELIGQNIVVQSLVNTI--SRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aI--ksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce 520 (1268)
.++|++..++.|...+ .....++.++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999998 334445789999999999999999998888543
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00053 Score=73.94 Aligned_cols=110 Identities=22% Similarity=0.372 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IR 560 (1268)
..+...+..+. +..++.||+|||||++++.+++.+... +..++.+.++. .....+.
T Consensus 8 ~a~~~~l~~~~--~~~~l~G~aGtGKT~~l~~~~~~~~~~---------------------g~~v~~~apT~-~Aa~~L~ 63 (196)
T PF13604_consen 8 EAVRAILTSGD--RVSVLQGPAGTGKTTLLKALAEALEAA---------------------GKRVIGLAPTN-KAAKELR 63 (196)
T ss_dssp HHHHHHHHCTC--SEEEEEESTTSTHHHHHHHHHHHHHHT---------------------T--EEEEESSH-HHHHHHH
T ss_pred HHHHHHHhcCC--eEEEEEECCCCCHHHHHHHHHHHHHhC---------------------CCeEEEECCcH-HHHHHHH
Confidence 33444444442 578999999999999999998887421 23555554432 1122222
Q ss_pred HHH-------HHH-HcCCCC------CCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 561 YIL-------KHL-SAGLPS------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 561 eLI-------Eea-~~~pp~------~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
+-. ..+ ...... ....+.||||||+.++....+..|++.+... ...+||+....
T Consensus 64 ~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~--~~klilvGD~~ 131 (196)
T PF13604_consen 64 EKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKS--GAKLILVGDPN 131 (196)
T ss_dssp HHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred HhhCcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhc--CCEEEEECCcc
Confidence 211 011 000000 0245679999999999999999999998874 45566665443
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0001 Score=77.92 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=69.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCC--CccEEEE-cCC-------C---CcChHH---
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGK--SRNFMEV-DGT-------N---KKGLDR--- 558 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~--s~dfIEI-DaS-------s---~~gId~--- 558 (1268)
.++|+|+||+||||+++.+++.+.... ...||++..... ..|. ++.++.+ ++. . ...+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~---~~v~Gf~t~evr-~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v 76 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG---LPVGGFYTEEVR-ENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV 76 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC---GGEEEEEEEEEE-TTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC---CccceEEeeccc-CCCceEEEEEEECcCCCccccccccccccccCCCEEE
Confidence 379999999999999999999983211 112333221111 1111 2222222 110 0 000000
Q ss_pred HHHHHHHHHcCCCCCC--CCcEEEEEeCCCCC---CHHHHHHHHHHHcCCCCcEEEEEEeCC--CCCcchhhhcc--eeE
Q 000818 559 VRYILKHLSAGLPSAS--PRFKVFVIDECHLL---PSKTWLAFLKFLEEPPQRVVFIFITTD--IDNVPRSIQSR--CQK 629 (1268)
Q Consensus 559 IReLIEea~~~pp~~~--g~~KVIIIDEaD~L---S~ea~naLLK~LEepp~~vVfILaTn~--~eKL~pAL~SR--cq~ 629 (1268)
..+.++.+.. +.... ....++||||+..| ++...+++.++|+.+ ..+|.+-.. ...+...|.+| +.+
T Consensus 77 ~~e~fe~~~~-~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~---~~vi~vv~~~~~~~~l~~i~~~~~~~i 152 (168)
T PF03266_consen 77 DLESFEEIGL-PALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSN---KPVIGVVHKRSDNPFLEEIKRRPDVKI 152 (168)
T ss_dssp -HHHHHCCCC-CCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTT---SEEEEE--SS--SCCHHHHHTTTTSEE
T ss_pred cHHHHHHHHH-HHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCC---CcEEEEEecCCCcHHHHHHHhCCCcEE
Confidence 0122222211 11101 24569999999876 567789999999943 223333322 34688899998 778
Q ss_pred EEecCCCHHHHHH
Q 000818 630 YLFNKIKDGDIVA 642 (1268)
Q Consensus 630 I~F~pLs~eEI~~ 642 (1268)
|...+-..+.+..
T Consensus 153 ~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 153 FEVTEENRDALPE 165 (168)
T ss_dssp EE--TTTCCCHHH
T ss_pred EEeChhHHhhHhh
Confidence 8887777666544
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00033 Score=78.69 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHH------H
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH------L 566 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEe------a 566 (1268)
...++|+||+|||||++|-+++.++. . .+..++.+..++ .+.++...+.. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~--------------------~g~sv~f~~~~e--l~~~Lk~~~~~~~~~~~l 161 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K--------------------AGISVLFITAPD--LLSKLKAAFDEGRLEEKL 161 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H--------------------cCCeEEEEEHHH--HHHHHHHHHhcCchHHHH
Confidence 36799999999999999999999984 1 134555555443 12222221111 0
Q ss_pred HcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 567 SAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 567 ~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.. ......|+||||+.... ....+.|..++...-..-..|+++|.+.
T Consensus 162 ~~----~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 162 LR----ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred HH----HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 00 02445699999999854 3344555554443222222378887663
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.014 Score=68.12 Aligned_cols=202 Identities=15% Similarity=0.088 Sum_probs=111.9
Q ss_pred cCcHHHHHHHHHHHHc-CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc---------------
Q 000818 474 IGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF--------------- 537 (1268)
Q Consensus 474 VGQe~vv~tLk~aIks-gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i--------------- 537 (1268)
|.+..+-+.+.+.|.+ |. .+.+.||+.+|||++...+.+.+..... .|- .-+|..+
T Consensus 14 i~R~~~e~~~~~~i~~~G~---~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v-~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPGS---YIRIKAPRQMGKTSLLLRLLERLQQQGY----RCV-YIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred cCchHHHHHHHHHHhcCCC---EEEEECcccCCHHHHHHHHHHHHHHCCC----EEE-EEEeecCCCcccCCHHHHHHHH
Confidence 4455566777777765 54 5899999999999999999888853211 000 0111111
Q ss_pred ----ccCCCccEEEEcC---CCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH------HHHHHHHHHHcCC-
Q 000818 538 ----ISGKSRNFMEVDG---TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS------KTWLAFLKFLEEP- 603 (1268)
Q Consensus 538 ----~sG~s~dfIEIDa---Ss~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~------ea~naLLK~LEep- 603 (1268)
...-..+- .++. ........+...+++.-.. .....-|++|||+|.+.. +.+..|+.+.++.
T Consensus 86 ~~~i~~~L~l~~-~l~~~w~~~~~~~~~~~~~~~~~ll~---~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 86 CEEISRQLKLDE-KLDEYWDEEIGSKISCTEYFEEYLLK---QIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHcCCCh-hHHHHHHHhcCChhhHHHHHHHHHHh---cCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 00000000 0000 0000111222333332111 123455899999998864 2233444444432
Q ss_pred ----CCcEEEEEEeCCCCCcchhh----hcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Q 000818 604 ----PQRVVFIFITTDIDNVPRSI----QSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAE 675 (1268)
Q Consensus 604 ----p~~vVfILaTn~~eKL~pAL----~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAi 675 (1268)
....+||++......+...+ ..-+..+.+...+.+++...++. .+..+++..++.|...++|.+--..
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHHHHH
Confidence 24577777765332222211 13345588889999998766544 5777889999999999999987665
Q ss_pred HHHHHHHHhCCccCHHHH
Q 000818 676 TMLDQLSLLGKRITSSLV 693 (1268)
Q Consensus 676 nlLEqLsllgk~IT~edV 693 (1268)
.++..++. +.++.+.+
T Consensus 238 ~~~~~l~~--~~~~~~~l 253 (331)
T PF14516_consen 238 KACYLLVE--EQITLEQL 253 (331)
T ss_pred HHHHHHHH--ccCcHHHH
Confidence 56555544 35665544
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00035 Score=87.43 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=91.7
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHcCC-----------CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCc
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISRGR-----------IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIksgR-----------i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C 531 (1268)
++..-..+-.|.|++.+++.|.-++-+|- -.-++||.|.|||||+.+.+.+++.+-- +.
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr---------~v- 347 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR---------GV- 347 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc---------eE-
Confidence 33333345578899999988887775431 1137899999999999999999877611 00
Q ss_pred ccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC--------
Q 000818 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------- 603 (1268)
Q Consensus 532 ~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------- 603 (1268)
+..|.+..-.-+.++-.+ +.. .-+..-.+.....+...|+.|||++.|.....++|...||..
T Consensus 348 -----ytsgkgss~~GLTAav~r--d~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAG 418 (682)
T COG1241 348 -----YTSGKGSSAAGLTAAVVR--DKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAG 418 (682)
T ss_pred -----EEccccccccCceeEEEE--ccC--CCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccc
Confidence 011111110111111000 000 001000111223567789999999999999999999999853
Q ss_pred -----CCcEEEEEEeCCCC-------------CcchhhhcceeEEEec
Q 000818 604 -----PQRVVFIFITTDID-------------NVPRSIQSRCQKYLFN 633 (1268)
Q Consensus 604 -----p~~vVfILaTn~~e-------------KL~pAL~SRcq~I~F~ 633 (1268)
+.++.+++|+|... .|+++|+||+..|.+-
T Consensus 419 I~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl 466 (682)
T COG1241 419 ITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVL 466 (682)
T ss_pred eeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEe
Confidence 34455566666442 3789999999875543
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0094 Score=71.24 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=72.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCc-ChHHHHHHHHHHHcCCCCC
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK-GLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~-gId~IReLIEea~~~pp~~ 573 (1268)
+++++||+++||||+++.+.+.+.. .++.++-.+.. .-..+.+.+........
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~------------------------~~iy~~~~d~~~~~~~l~d~~~~~~~~~~-- 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE------------------------EIIYINFDDLRLDRIELLDLLRAYIELKE-- 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc------------------------ceEEEEecchhcchhhHHHHHHHHHHhhc--
Confidence 8999999999999999888777621 13333322211 01122233333322211
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC----CcchhhhcceeEEEecCCCHHHHHHH
Q 000818 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID----NVPRSIQSRCQKYLFNKIKDGDIVAR 643 (1268)
Q Consensus 574 ~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e----KL~pAL~SRcq~I~F~pLs~eEI~~i 643 (1268)
.....+|+||+|.+.. -+.+|..+.+.++. -|++++.... ++...+..|...+.+.|++..|....
T Consensus 93 -~~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 93 -REKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred -cCCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 1456899999998743 34445555555543 3444444332 45667888988899999999888654
|
|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00043 Score=67.54 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=47.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCC
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g 575 (1268)
+.|+||+|+|||++|+.|++.+....... ....++..++.+ +..+.. .
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~----------------~~~~vy~~~~~~--------~~w~gY--------~ 48 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEP----------------TKDSVYTRNPGD--------KFWDGY--------Q 48 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccC----------------CCCcEEeCCCcc--------chhhcc--------C
Confidence 47999999999999999999985322110 112344433322 112221 2
Q ss_pred CcEEEEEeCCCCCCHH----HHHHHHHHHcC
Q 000818 576 RFKVFVIDECHLLPSK----TWLAFLKFLEE 602 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~e----a~naLLK~LEe 602 (1268)
+..|+++||+...... ....|++++..
T Consensus 49 ~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 49 GQPVVIIDDFGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred CCcEEEEeecCccccccchHHHHHHHHHHhc
Confidence 3469999999988754 56677777754
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=76.44 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=52.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcC
Q 000818 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG 569 (1268)
Q Consensus 490 gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~ 569 (1268)
.+.+..+||||+||+|||++|+.|+........+. ....+......+++.++... ..+.+.+.+..+..
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~--------~~~~l~g~~~~~v~~~d~~~--~~~~~~d~l~~~~~- 77 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDM--------SSKVLIGDENVDIADHDDMP--PIQAMVEFYVMQNI- 77 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCCCEEEeccc--------cchhccCCCCCceeecCCCC--CHHHHHHHHHHHHh-
Confidence 34457899999999999999999974321111110 00111111234666665443 35566666665543
Q ss_pred CCCCCCCcEEEEEeCCCCCC
Q 000818 570 LPSASPRFKVFVIDECHLLP 589 (1268)
Q Consensus 570 pp~~~g~~KVIIIDEaD~LS 589 (1268)
....|++||||.++.|.
T Consensus 78 ---~~~~ydtVVIDsI~~l~ 94 (220)
T TIGR01618 78 ---QAVKYDNIVIDNISALQ 94 (220)
T ss_pred ---ccccCCEEEEecHHHHH
Confidence 24779999999998763
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00089 Score=71.82 Aligned_cols=106 Identities=11% Similarity=0.133 Sum_probs=56.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccc-------ccccccCCCccEEEEcCCCCcChHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE-------CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~s-------C~~i~sG~s~dfIEIDaSs~~gId~IReLIEea 566 (1268)
...|++||+|+|||+++..++..+.... ..|..... -..+....+..+ .+. .+....++++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g----~~v~i~k~~~d~~~~~~~i~~~lg~~~---~~~---~~~~~~~~~~~~ 72 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG----MKVLVFKPAIDDRYGEGKVVSRIGLSR---EAI---PVSSDTDIFELI 72 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC----CeEEEEeccccccccCCcEecCCCCcc---cce---EeCChHHHHHHH
Confidence 4689999999999999999988773211 11110000 000000001000 000 011123333333
Q ss_pred HcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 567 ~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
.. ..+.+.||||||++.|..+....|++.+... .+.+|++.-.
T Consensus 73 ~~----~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~--g~~vi~tgl~ 115 (190)
T PRK04296 73 EE----EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDL--GIPVICYGLD 115 (190)
T ss_pred Hh----hCCCCCEEEEEccccCCHHHHHHHHHHHHHc--CCeEEEEecC
Confidence 32 1346779999999999877666677776554 4455555444
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0029 Score=83.10 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=107.5
Q ss_pred CccccCcHHHHHHHHHHHHc--CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 470 FDELIGQNIVVQSLVNTISR--GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIks--gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
-++.|--+.+-+.+.+.++. ++. -.+||.||..+|||+++..+|+.. +..|+.
T Consensus 864 q~hyIiTPfVqkn~ln~~Ra~s~~~-fP~LiQGpTSSGKTSMI~yla~~t------------------------ghkfVR 918 (4600)
T COG5271 864 QEHYIITPFVQKNYLNTMRAASLSN-FPLLIQGPTSSGKTSMILYLARET------------------------GHKFVR 918 (4600)
T ss_pred cceeEecHHHHHHHHHHHHHHhhcC-CcEEEecCCCCCcchHHHHHHHHh------------------------CccEEE
Confidence 33445445555545554443 221 347999999999999999999986 234455
Q ss_pred EcCCCCc--------------ChHHH--HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC--------
Q 000818 548 VDGTNKK--------------GLDRV--RYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------- 603 (1268)
Q Consensus 548 IDaSs~~--------------gId~I--ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------- 603 (1268)
||-...+ |.=.+ .-+++.++... -||+||......+...+|-+.|++.
T Consensus 919 INNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy--------WIVLDELNLApTDVLEaLNRLLDDNRelfIPET 990 (4600)
T COG5271 919 INNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY--------WIVLDELNLAPTDVLEALNRLLDDNRELFIPET 990 (4600)
T ss_pred ecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc--------EEEeeccccCcHHHHHHHHHhhccccceecCCc
Confidence 5433221 10011 23555555332 6899999999999999999998753
Q ss_pred -----CCcEEEEEEeCCCCC-------cchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Q 000818 604 -----PQRVVFIFITTDIDN-------VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNA 667 (1268)
Q Consensus 604 -----p~~vVfILaTn~~eK-------L~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S 667 (1268)
|..-..+|+|.+|+- |-.+++.|+..++|..++.+++..+|... .+|.+..+..|++..
T Consensus 991 qevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~r-----c~iapSyakKiVeVy 1061 (4600)
T COG5271 991 QEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHGR-----CEIAPSYAKKIVEVY 1061 (4600)
T ss_pred ceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhcc-----CccCHHHHHHHHHHH
Confidence 222334778877752 56799999999999999999999999764 466676666666644
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00045 Score=77.75 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCc-Ch------HHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK-GL------DRVRYILKHL 566 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~-gI------d~IReLIEea 566 (1268)
..++|+||+|+|||+++.+++..+.. . +..+..++..+.. .+ ..+..++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-------------------~--G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~ 161 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-------------------A--GIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-------------------c--CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 46899999999999999999877521 0 2234444332210 00 0011222221
Q ss_pred HcCCCCCCCCcEEEEEeCCCCC--CHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 567 SAGLPSASPRFKVFVIDECHLL--PSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 567 ~~~pp~~~g~~KVIIIDEaD~L--S~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
.....++||||++.+ .....+.|+.+++..-....+|++||.+
T Consensus 162 -------~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 162 -------VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred -------hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 123359999999975 4455567777775322223467788765
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0063 Score=74.93 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=92.6
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHcC-----------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRG-----------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIksg-----------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg 529 (1268)
++.+.--..|.-|.|++.++.-|.-++-.| |-..++++.|.|||||+.+.++.+.-+ |-+
T Consensus 335 ly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs---------PR~ 405 (764)
T KOG0480|consen 335 LYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS---------PRS 405 (764)
T ss_pred HHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC---------Ccc
Confidence 334444445677889999998887776543 122478999999999999999886544 111
Q ss_pred CcccccccccCCCccEEEE-cCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----
Q 000818 530 YCRECNDFISGKSRNFMEV-DGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP----- 603 (1268)
Q Consensus 530 ~C~sC~~i~sG~s~dfIEI-DaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep----- 603 (1268)
. -.|.......+...-.+ |..+. + -.+|. ..++.+...|.-|||+|+|....+.+|...||.-
T Consensus 406 v-YtsGkaSSaAGLTaaVvkD~esg---d---f~iEA----GALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIa 474 (764)
T KOG0480|consen 406 V-YTSGKASSAAGLTAAVVKDEESG---D---FTIEA----GALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIA 474 (764)
T ss_pred e-EecCcccccccceEEEEecCCCC---c---eeeec----CcEEEccCceEEechhcccChHhHHHHHHHHHhheehhe
Confidence 1 01111111112111111 11110 0 11111 2235678889999999999998899999999853
Q ss_pred --------CCcEEEEEEeCCCC-------------CcchhhhcceeEEE
Q 000818 604 --------PQRVVFIFITTDID-------------NVPRSIQSRCQKYL 631 (1268)
Q Consensus 604 --------p~~vVfILaTn~~e-------------KL~pAL~SRcq~I~ 631 (1268)
+.++.+|.|+|... ++.++|+||+..|.
T Consensus 475 KAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~F 523 (764)
T KOG0480|consen 475 KAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFF 523 (764)
T ss_pred ecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEE
Confidence 34555566666442 36889999997643
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.009 Score=71.92 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=85.6
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHcCC-----------CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGR-----------IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIksgR-----------i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg 529 (1268)
+++|..-..--+|.||+++++.|+-.+-.|- -.-+++|.|.||+-|+.+.+.+.+-. |-+
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla---------pRg 402 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA---------PRG 402 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC---------ccc
Confidence 4444444444488999999999988876431 11268999999999999999886553 111
Q ss_pred CcccccccccCCCccEEEEcCCCCcChHHHHH-HHHHHH-cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC----
Q 000818 530 YCRECNDFISGKSRNFMEVDGTNKKGLDRVRY-ILKHLS-AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP---- 603 (1268)
Q Consensus 530 ~C~sC~~i~sG~s~dfIEIDaSs~~gId~IRe-LIEea~-~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep---- 603 (1268)
. +..|.+..=+-+.++- +++ +..++. ....+..+...|.-|||+|+|......++-.+||.-
T Consensus 403 v------YTTGrGSSGVGLTAAV------mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISI 470 (721)
T KOG0482|consen 403 V------YTTGRGSSGVGLTAAV------MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISI 470 (721)
T ss_pred c------eecCCCCCccccchhh------hcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhh
Confidence 1 1112111111111111 000 001110 001123456678999999999887777777777642
Q ss_pred ---------CCcEEEEEEeCCCC-------------CcchhhhcceeE
Q 000818 604 ---------PQRVVFIFITTDID-------------NVPRSIQSRCQK 629 (1268)
Q Consensus 604 ---------p~~vVfILaTn~~e-------------KL~pAL~SRcq~ 629 (1268)
..++.++.++|... .||.+|+||+..
T Consensus 471 aKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDl 518 (721)
T KOG0482|consen 471 AKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDL 518 (721)
T ss_pred hhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhh
Confidence 23444455554321 379999999854
|
|
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0016 Score=80.19 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHH
Q 000818 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDR 558 (1268)
Q Consensus 479 vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~ 558 (1268)
.+..|+.+++...-...++||||||||||++|..|++.|. +.-+..+|..+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~-----------------------G~vi~fvN~~s------ 470 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK-----------------------GKVISFVNSKS------ 470 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEEEECcc------
Confidence 3455666665322136899999999999999999999983 11122233222
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHcCCC-------------CcEEEEEEeCCCC---Ccch
Q 000818 559 VRYILKHLSAGLPSASPRFKVFVIDECHLLP-SKTWLAFLKFLEEPP-------------QRVVFIFITTDID---NVPR 621 (1268)
Q Consensus 559 IReLIEea~~~pp~~~g~~KVIIIDEaD~LS-~ea~naLLK~LEepp-------------~~vVfILaTn~~e---KL~p 621 (1268)
.+...+ ....+|+||||+-.-. .-....|..+|+..| ....+|++||..- .-..
T Consensus 471 ------~FwLqp---l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~ 541 (613)
T PHA02774 471 ------HFWLQP---LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYK 541 (613)
T ss_pred ------ccccch---hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhH
Confidence 111111 2456799999982211 111235666666542 1123466666432 3467
Q ss_pred hhhcceeEEEecC-------------CCHHHHHHHHHHHHHhcCCC
Q 000818 622 SIQSRCQKYLFNK-------------IKDGDIVARLRKISAEENLN 654 (1268)
Q Consensus 622 AL~SRcq~I~F~p-------------Ls~eEI~~iL~kiakkEgi~ 654 (1268)
.|.||...|.|+. +++.....+.++......+.
T Consensus 542 yL~sRi~~f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 542 YLHSRITVFEFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred HhhhhEEEEECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 8999999988863 34566777777777665554
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=72.44 Aligned_cols=151 Identities=21% Similarity=0.343 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCc--
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK-- 554 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~-- 554 (1268)
.++-+-|++.+..|. .+.+++.||+|.|||.+..-.... +.+.. ...-++.+|+.-..
T Consensus 34 ~~l~~~lkqt~~~gE-snsviiigprgsgkT~li~~~Ls~-~q~~~------------------E~~l~v~Lng~~~~dk 93 (408)
T KOG2228|consen 34 KHLSELLKQTILHGE-SNSVIIIGPRGSGKTILIDTRLSD-IQENG------------------ENFLLVRLNGELQTDK 93 (408)
T ss_pred HHHHHHHHHHHHhcC-CCceEEEccCCCCceEeeHHHHhh-HHhcC------------------CeEEEEEECccchhhH
Confidence 334444455555566 478999999999999976554333 11111 12333444543211
Q ss_pred ----C-------------------hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHH-HHHHHc---CCCCcE
Q 000818 555 ----G-------------------LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLA-FLKFLE---EPPQRV 607 (1268)
Q Consensus 555 ----g-------------------Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~na-LLK~LE---epp~~v 607 (1268)
+ .+.+..+++.+.... ...+..-|+|+||+|.+.+..-.. |..+++ .....+
T Consensus 94 ~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~-~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Pi 172 (408)
T KOG2228|consen 94 IALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGD-ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPI 172 (408)
T ss_pred HHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCC-CCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCe
Confidence 0 112222333332211 112333456668999887655333 333443 344578
Q ss_pred EEEEEeCCCC---Ccchhhhcce---eEEEecCCCHHHHHHHHHHHH
Q 000818 608 VFIFITTDID---NVPRSIQSRC---QKYLFNKIKDGDIVARLRKIS 648 (1268)
Q Consensus 608 VfILaTn~~e---KL~pAL~SRc---q~I~F~pLs~eEI~~iL~kia 648 (1268)
.+|+.|+..+ .+-+.++||+ +++.++..+-.+.+.++++..
T Consensus 173 ciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 173 CIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8899998876 4667889998 346666777888888888765
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0027 Score=77.68 Aligned_cols=232 Identities=16% Similarity=0.198 Sum_probs=125.0
Q ss_pred cccCcHHHHHHHHHHHHcCCC-----------CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccC
Q 000818 472 ELIGQNIVVQSLVNTISRGRI-----------APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIksgRi-----------~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG 540 (1268)
.|.|+..++.++.-++-.|-. .-++||+|.|||||+.+.+..++--.... |..|
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV---------------~tTG 514 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAV---------------FTTG 514 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCccee---------------Eecc
Confidence 466899999888887765421 13689999999999999999887642111 1112
Q ss_pred CCccEEEEcCCCCcChHH-HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-------------CCc
Q 000818 541 KSRNFMEVDGTNKKGLDR-VRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-------------PQR 606 (1268)
Q Consensus 541 ~s~dfIEIDaSs~~gId~-IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-------------p~~ 606 (1268)
.+..-+-+.+...+ +- .++ ..-.+..+..+.+.|.+|||+|.|.......+-..||.- ...
T Consensus 515 qGASavGLTa~v~K--dPvtrE---WTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqAr 589 (854)
T KOG0477|consen 515 QGASAVGLTAYVRK--DPVTRE---WTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQAR 589 (854)
T ss_pred CCccccceeEEEee--CCccce---eeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhh
Confidence 22111111111100 00 011 100111224577889999999999865444444443321 246
Q ss_pred EEEEEEeCCCC-------------CcchhhhcceeEEE-----ecCCCHHHHHHHHHHH-HHh-------cCCC------
Q 000818 607 VVFIFITTDID-------------NVPRSIQSRCQKYL-----FNKIKDGDIVARLRKI-SAE-------ENLN------ 654 (1268)
Q Consensus 607 vVfILaTn~~e-------------KL~pAL~SRcq~I~-----F~pLs~eEI~~iL~ki-akk-------Egi~------ 654 (1268)
+.+|+++|..- ++..+|+||+.++. +.+..++.+.+++-.- ..- .++.
T Consensus 590 ctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~ 669 (854)
T KOG0477|consen 590 CTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPA 669 (854)
T ss_pred hhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccc
Confidence 77777776521 46789999997643 4455555555554321 111 1221
Q ss_pred ----CCHHHHHHHHHHc---------CCCHHHHHHHHHHH---HHh-C-CccCHHHHHHHhcccchHHHHHHHHHHHcCC
Q 000818 655 ----VEPDALDLIALNA---------DGSLRDAETMLDQL---SLL-G-KRITSSLVNELVGVVSEEKLLELLELAMSSD 716 (1268)
Q Consensus 655 ----Id~dALelLA~~S---------~GDLRdAinlLEqL---sll-g-k~IT~edV~eLVG~v~eedifdLLdAIls~D 716 (1268)
++.++|..-+.++ .+|....-.+.-.+ +.. | -+||..+|+.++.......-..|-+.+...|
T Consensus 670 ~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d 749 (854)
T KOG0477|consen 670 RVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEED 749 (854)
T ss_pred ccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhH
Confidence 5566665544444 33333333322222 222 2 3799999988876443333444445555555
Q ss_pred HHHHHHH
Q 000818 717 TAETVKR 723 (1268)
Q Consensus 717 ~~~ALk~ 723 (1268)
...|+..
T Consensus 750 ~~~AI~v 756 (854)
T KOG0477|consen 750 VDMAIRV 756 (854)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.016 Score=66.03 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcC--CCCCeEEEEcCCCchHHHHHHHHHHHhhcc
Q 000818 478 IVVQSLVNTISRG--RIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 478 ~vv~tLk~aIksg--Ri~~ayLL~GPpGTGKTSLARaLAkaLnce 520 (1268)
..++.|.+.|... ..+-++.|+|+=|+|||++.+.+.+.+...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4567778888765 455688999999999999999999998654
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0045 Score=72.68 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=115.9
Q ss_pred ccccCcHHHHHHHHHHHHcC--CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccE--E
Q 000818 471 DELIGQNIVVQSLVNTISRG--RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF--M 546 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIksg--Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~df--I 546 (1268)
..+.+++..+..|...+-.. .++.+++|||..|||||.++|.+.+.++-+. . ...|-.|-+-..+....-..+ .
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~-v-w~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLEN-V-WLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcc-e-eeehHHhccHHHHHHHHHHHhccC
Confidence 45668888888888887543 4566779999999999999999999884221 1 122333322222111000000 0
Q ss_pred EEcCCCCcC-hHHHHHHHHHHHcCCCCC-CCCcEEEEEeCCCCCCH---HHHHHHHHHH---cCCCCcEEEEEEeCCCCC
Q 000818 547 EVDGTNKKG-LDRVRYILKHLSAGLPSA-SPRFKVFVIDECHLLPS---KTWLAFLKFL---EEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 547 EIDaSs~~g-Id~IReLIEea~~~pp~~-~g~~KVIIIDEaD~LS~---ea~naLLK~L---Eepp~~vVfILaTn~~eK 618 (1268)
.-++...++ .+.+..++..+.+.+... .+..-++|+|.+|.|.. ..++.|++.- ..+ .++||++....++
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~--~i~iils~~~~e~ 161 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP--TIVIILSAPSCEK 161 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC--ceEEEEeccccHH
Confidence 000100011 133444444444322111 23345677899998863 3345554443 343 6777777665554
Q ss_pred cchhhhcc--eeEEEecCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHH-hCCccCHH
Q 000818 619 VPRSIQSR--CQKYLFNKIKDGDIVARLRKISA-EENLNVEPDALDLIAL---NADGSLRDAETMLDQLSL-LGKRITSS 691 (1268)
Q Consensus 619 L~pAL~SR--cq~I~F~pLs~eEI~~iL~kiak-kEgi~Id~dALelLA~---~S~GDLRdAinlLEqLsl-lgk~IT~e 691 (1268)
....=.+- .-.++|+.++.+++..++.+--- +...++-..-+..+.. .+.+|++....+++.+.. +-++|+..
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~epi~~~ 241 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEPITKG 241 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhccccccC
Confidence 43321122 24599999999999988865321 1111111222222222 124488888888887754 34444433
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=80.60 Aligned_cols=106 Identities=21% Similarity=0.352 Sum_probs=66.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~ 573 (1268)
..+||+||+|||||+++.+|++.|. ..++.++.+..+ .. +-..+
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~------------------------G~vlsVNsPt~k----s~-----FwL~p--- 475 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCG------------------------GKSLNVNCPPDK----LN-----FELGC--- 475 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC------------------------CeEEEeeCCcch----hH-----HHhhh---
Confidence 5899999999999999999999982 234445543311 10 11111
Q ss_pred CCCcEEEEEeCCCCCC-------H----HHHHHHHHHHcCC-C----------CcEEE--EEEeCCCCCcchhhhcceeE
Q 000818 574 SPRFKVFVIDECHLLP-------S----KTWLAFLKFLEEP-P----------QRVVF--IFITTDIDNVPRSIQSRCQK 629 (1268)
Q Consensus 574 ~g~~KVIIIDEaD~LS-------~----ea~naLLK~LEep-p----------~~vVf--ILaTn~~eKL~pAL~SRcq~ 629 (1268)
....++++||++-.-. + +...-|+.+|+.. + ...+| .++|.+...||.||.-|+..
T Consensus 476 l~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~iP~T~~~Rf~~ 555 (647)
T PHA02624 476 AIDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYLIPQTVKARFAK 555 (647)
T ss_pred hhhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCcccchhHHHHHHH
Confidence 2456689999984211 1 1135677777654 1 11111 44666677799999999854
Q ss_pred -EEecCC
Q 000818 630 -YLFNKI 635 (1268)
Q Consensus 630 -I~F~pL 635 (1268)
+.|.+-
T Consensus 556 ~~~F~~k 562 (647)
T PHA02624 556 VLDFKPK 562 (647)
T ss_pred hcccccc
Confidence 777554
|
|
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.029 Score=67.63 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCCCccccCcHHHHHHHHHHHHcC--CCCCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRG--RIAPVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksg--Ri~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
|....+++|++.....|...+... ..+...+|+||+|+|||++++.++..+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 555889999999999999988642 234578999999999999999998776
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0031 Score=80.97 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=115.5
Q ss_pred CCccccCc-HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc-ccCCCCCCCCCcccccccccCCCccEE
Q 000818 469 FFDELIGQ-NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECNDFISGKSRNFM 546 (1268)
Q Consensus 469 tFdDLVGQ-e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc-e~~e~~~PCg~C~sC~~i~sG~s~dfI 546 (1268)
.++-++|+ ++.++.+.+.+.+.+- ..-+|.|.+|+|||.++.-+|+.+.. ..+... ....++
T Consensus 184 kldPvigr~deeirRvi~iL~Rrtk-~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l---------------~~~~l~ 247 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILSRKTK-NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETL---------------KDKKLI 247 (898)
T ss_pred CCCCccCCchHHHHHHHHHHhccCC-CCceEEecCCCCchhHHHHHHHHhhcCCCCccc---------------cccceE
Confidence 46778887 7777777777766554 67799999999999999999999843 222111 112222
Q ss_pred EEc------CCCCcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHcCCCCcEEEE
Q 000818 547 EVD------GTNKKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------KTWLAFLKFLEEPPQRVVFI 610 (1268)
Q Consensus 547 EID------aSs~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--------ea~naLLK~LEepp~~vVfI 610 (1268)
.++ ++..++ -..+..+++++.. .+..-|++|||+|.+.. ++.|.|...|... .+.+|
T Consensus 248 ~l~~g~l~aGa~~rge~E~rlk~l~k~v~~-----~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg--~l~~I 320 (898)
T KOG1051|consen 248 ALDFGSLVAGAKRRGEFEERLKELLKEVES-----GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARG--GLWCI 320 (898)
T ss_pred EEEhhhcccCcccchHHHHHHHHHHHHHhc-----CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcC--CeEEE
Confidence 222 333222 2345666666553 35667999999999853 3344444455444 39999
Q ss_pred EEeCCCC-----CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHH
Q 000818 611 FITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE----ENLNVEPDALDLIALN 666 (1268)
Q Consensus 611 LaTn~~e-----KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk----Egi~Id~dALelLA~~ 666 (1268)
.+|+... .-+|++..|++.+.+.-++.++...+|...... .|..+.+.++...+..
T Consensus 321 GatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~ 385 (898)
T KOG1051|consen 321 GATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQL 385 (898)
T ss_pred ecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccch
Confidence 9998543 358899999999999999988877777665544 3566666666544443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0098 Score=75.48 Aligned_cols=178 Identities=16% Similarity=0.275 Sum_probs=106.3
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
.+|......|-.+.....| ..+.-...+||+-|.|.||||++-.++..+. . +...-
T Consensus 13 ~~P~~~~~~v~R~rL~~~L----~~~~~~RL~li~APAGfGKttl~aq~~~~~~-~-------------------~~~v~ 68 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRL----RRANDYRLILISAPAGFGKTTLLAQWRELAA-D-------------------GAAVA 68 (894)
T ss_pred CCCCCcccccccHHHHHHH----hcCCCceEEEEeCCCCCcHHHHHHHHHHhcC-c-------------------cccee
Confidence 3455555666666555444 4444457899999999999999999976331 1 11233
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHcCCCC-----------------------------CCCCcEEEEEeCCCCCCHHH-HH
Q 000818 545 FMEVDGTNKKGLDRVRYILKHLSAGLPS-----------------------------ASPRFKVFVIDECHLLPSKT-WL 594 (1268)
Q Consensus 545 fIEIDaSs~~gId~IReLIEea~~~pp~-----------------------------~~g~~KVIIIDEaD~LS~ea-~n 594 (1268)
.+.+|.+++....-+..+++.+....|. .-.+.-.+|||+.|.++..+ ..
T Consensus 69 Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~ 148 (894)
T COG2909 69 WLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHE 148 (894)
T ss_pred EeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHH
Confidence 4444444322211122222222211110 01122488999999998665 55
Q ss_pred HHHHHHcCCCCcEEEEEEeCCCCCc-chhhhcceeEEEec----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Q 000818 595 AFLKFLEEPPQRVVFIFITTDIDNV-PRSIQSRCQKYLFN----KIKDGDIVARLRKISAEENLNVEPDALDLIALNADG 669 (1268)
Q Consensus 595 aLLK~LEepp~~vVfILaTn~~eKL-~pAL~SRcq~I~F~----pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~G 669 (1268)
.|..+|+..|+++++|++|.....+ ...++=|-+.+++. ..+.+|..+++... -+..++...+..|...++|
T Consensus 149 ~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teG 225 (894)
T COG2909 149 ALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEG 225 (894)
T ss_pred HHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhccc
Confidence 6777788889999999999776543 23333333332221 34566776666542 2478899989988888887
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0011 Score=67.29 Aligned_cols=49 Identities=33% Similarity=0.477 Sum_probs=38.8
Q ss_pred ccccCcHHHHHHHHHHHHc----C--CCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 471 DELIGQNIVVQSLVNTISR----G--RIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 471 dDLVGQe~vv~tLk~aIks----g--Ri~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
..|.||..+++.+.++|.. . +-+-++-|+|++|||||.+++.||+.|..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 4688999888888777763 2 22346679999999999999999999853
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.018 Score=76.34 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=91.6
Q ss_pred HHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcC-------
Q 000818 483 LVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKG------- 555 (1268)
Q Consensus 483 Lk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~g------- 555 (1268)
+.+++.-+ ..+||.|.||+|||+++.++|+... ...+.||-++.+.
T Consensus 1536 VlRAmqv~---kpilLEGsPGVGKTSlItaLAr~tG------------------------~kliRINLSeQTdL~DLfGs 1588 (4600)
T COG5271 1536 VLRAMQVG---KPILLEGSPGVGKTSLITALARKTG------------------------KKLIRINLSEQTDLCDLFGS 1588 (4600)
T ss_pred HHHHHhcC---CceeecCCCCccHHHHHHHHHHHhc------------------------CceEEeeccccchHHHHhCC
Confidence 44444444 4589999999999999999999873 2334444333210
Q ss_pred ---hH---HH----HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----C--------CcEEEEEE
Q 000818 556 ---LD---RV----RYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----P--------QRVVFIFI 612 (1268)
Q Consensus 556 ---Id---~I----ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----p--------~~vVfILa 612 (1268)
++ ++ ..++..++ ...-|++||+...+......|-..|+.. | ..-..||+
T Consensus 1589 d~Pve~~Gef~w~dapfL~amr--------~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFA 1660 (4600)
T COG5271 1589 DLPVEEGGEFRWMDAPFLHAMR--------DGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFA 1660 (4600)
T ss_pred CCCcccCceeEecccHHHHHhh--------cCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeee
Confidence 00 00 01222222 2337899999988776665555555421 1 11234778
Q ss_pred eCCCC-------CcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 000818 613 TTDID-------NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666 (1268)
Q Consensus 613 Tn~~e-------KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~ 666 (1268)
+.+|. -||+.+..|+-++....++.+++..++... --.+.++....|++.
T Consensus 1661 aqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~----yp~v~~d~~~kiik~ 1717 (4600)
T COG5271 1661 AQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKM----YPQVNEDWRLKIIKF 1717 (4600)
T ss_pred ecCchhcCCCcccCCHHHhhhhheEEecccccchHHHHHHhh----CCccChHHHHHHHHH
Confidence 77774 389999999999999999999988776553 234666665555543
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.032 Score=66.95 Aligned_cols=131 Identities=17% Similarity=0.227 Sum_probs=79.1
Q ss_pred CcEEEEEeCCCCCCHH---HHHHHHHH----HcCCCCcEEEEEEeCCCC---Ccchhhhcce-eEEEecCCCHHHHHHHH
Q 000818 576 RFKVFVIDECHLLPSK---TWLAFLKF----LEEPPQRVVFIFITTDID---NVPRSIQSRC-QKYLFNKIKDGDIVARL 644 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~e---a~naLLK~----LEepp~~vVfILaTn~~e---KL~pAL~SRc-q~I~F~pLs~eEI~~iL 644 (1268)
.+.|||||.+..-... .+..|..+ .+..-.+| ||.|++.. .|-+++-.|. ..|.+...+++....++
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHV--IFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHV--IFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEE--EEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 3669999998664433 12223222 23443444 55666553 3555665554 45889999999999988
Q ss_pred HHHHHhcC-C-------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCHHHHHHHhcccchHH
Q 000818 645 RKISAEEN-L-------------------NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEK 704 (1268)
Q Consensus 645 ~kiakkEg-i-------------------~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~edV~eLVG~v~eed 704 (1268)
...+.... . ..+...++..+...||-+.++..+..++-. |+ .+.+++..+-.+.
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks-Ge-----~p~~Av~~iI~qs 299 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS-GE-----SPEEAVEEIISQS 299 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc-CC-----CHHHHHHHHHHHH
Confidence 88776541 1 135567888888889999998888877654 32 1223333333444
Q ss_pred HHHHHHHHHc
Q 000818 705 LLELLELAMS 714 (1268)
Q Consensus 705 ifdLLdAIls 714 (1268)
..+++...+.
T Consensus 300 a~eI~k~fl~ 309 (431)
T PF10443_consen 300 ASEIRKMFLL 309 (431)
T ss_pred HHHHHHHHhc
Confidence 4555554444
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0057 Score=61.23 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLn 518 (1268)
++|+||+|+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=75.28 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccC-CCCCCCCCccccccccc---------CCCccEEEEcCCCCcChHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVAT-DQTKPCGYCRECNDFIS---------GKSRNFMEVDGTNKKGLDRVRYI 562 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~-e~~~PCg~C~sC~~i~s---------G~s~dfIEIDaSs~~gId~IReL 562 (1268)
+..++|+||.|+||||++..||..+.-... .....+..+..|..+.. ..+.++.... ..+.+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~-----~~~~l~~~ 248 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE-----SFKDLKEE 248 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC-----cHHHHHHH
Confidence 357999999999999999999988742111 11112222222322111 0111221111 12333333
Q ss_pred HHHHHcCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHcCC--CCcEEEEEEeCCCCCcchhhhcce-----eEEEec
Q 000818 563 LKHLSAGLPSASPRFKVFVIDECHLLPSKT--WLAFLKFLEEP--PQRVVFIFITTDIDNVPRSIQSRC-----QKYLFN 633 (1268)
Q Consensus 563 IEea~~~pp~~~g~~KVIIIDEaD~LS~ea--~naLLK~LEep--p~~vVfILaTn~~eKL~pAL~SRc-----q~I~F~ 633 (1268)
+..+ .++.+||||++..+..+. ...|.++++.. +..++||+.++....-...+..++ .-+-|.
T Consensus 249 L~~~--------~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 249 ITQS--------KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred HHHh--------CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 3332 356799999999987443 45666666632 336778887665543222333332 236666
Q ss_pred CCCHHHHH
Q 000818 634 KIKDGDIV 641 (1268)
Q Consensus 634 pLs~eEI~ 641 (1268)
+++...-.
T Consensus 321 KlDet~~~ 328 (388)
T PRK12723 321 KLDETTCV 328 (388)
T ss_pred eccCCCcc
Confidence 77654433
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=66.57 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=33.3
Q ss_pred cccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 472 DLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.+.+.......+..++... ..++++||.|||||++|.+++...
T Consensus 56 ~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566666677777664 478999999999999999999853
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0014 Score=77.34 Aligned_cols=124 Identities=16% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCC
Q 000818 492 IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571 (1268)
Q Consensus 492 i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp 571 (1268)
.+..+.|||+.|+|||.++-.|...+.... +.- ...+.|....+..+..+.+. .+-+..+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~----k~R---~HFh~Fm~~vh~~l~~~~~~----~~~l~~va~~l~---- 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKR----KRR---VHFHEFMLDVHSRLHQLRGQ----DDPLPQVADELA---- 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccc----ccc---ccccHHHHHHHHHHHHHhCC----CccHHHHHHHHH----
Confidence 467899999999999999999988873211 000 00011111111111111111 123444455543
Q ss_pred CCCCCcEEEEEeCCCCCCHHH---HHHHHHHHcCCCCcEEEEEEeCCCC-C-------------cchhhhcceeEEEecC
Q 000818 572 SASPRFKVFVIDECHLLPSKT---WLAFLKFLEEPPQRVVFIFITTDID-N-------------VPRSIQSRCQKYLFNK 634 (1268)
Q Consensus 572 ~~~g~~KVIIIDEaD~LS~ea---~naLLK~LEepp~~vVfILaTn~~e-K-------------L~pAL~SRcq~I~F~p 634 (1268)
...+|+.+||++.-.... ...|+..|=+ ..+++|.|+|.++ . .+..|.++|.++.+.-
T Consensus 126 ---~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~--~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~ 200 (362)
T PF03969_consen 126 ---KESRLLCFDEFQVTDIADAMILKRLFEALFK--RGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG 200 (362)
T ss_pred ---hcCCEEEEeeeeccchhHHHHHHHHHHHHHH--CCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence 345699999998654332 3334444433 3688888888764 2 2446788999998866
Q ss_pred C
Q 000818 635 I 635 (1268)
Q Consensus 635 L 635 (1268)
.
T Consensus 201 ~ 201 (362)
T PF03969_consen 201 G 201 (362)
T ss_pred C
Confidence 5
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00018 Score=83.68 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=74.3
Q ss_pred hhhhhcCCCCCccccCcHHHHHHHHHHHHcCC-----------CCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCC
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGR-----------IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC 528 (1268)
Q Consensus 460 ~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgR-----------i~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PC 528 (1268)
.|..-.-| .|+|++.++..|.-++-++. -.-++||.|.|||||+.+.+.+++.. +....-+
T Consensus 17 ~l~~s~aP----~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~ 88 (331)
T PF00493_consen 17 RLANSIAP----SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTS 88 (331)
T ss_dssp CCHHHCSS----TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEE
T ss_pred HHHHHhCC----cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEEC
Confidence 34555556 56788888777655443321 12378999999999999998764332 1000000
Q ss_pred CCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----
Q 000818 529 GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP----- 603 (1268)
Q Consensus 529 g~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep----- 603 (1268)
|. -..+.+... .+.-....+ + -.++. .....+...|++|||++.+..+...+|+..||..
T Consensus 89 g~------~~s~~gLta-~~~~d~~~~-~---~~lea----Galvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~ 153 (331)
T PF00493_consen 89 GK------GSSAAGLTA-SVSRDPVTG-E---WVLEA----GALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIA 153 (331)
T ss_dssp CC------GSTCCCCCE-EECCCGGTS-S---ECEEE-----HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEEC
T ss_pred CC------CcccCCccc-eeccccccc-e---eEEeC----CchhcccCceeeecccccccchHHHHHHHHHHcCeeccc
Confidence 00 000001100 000000000 0 00000 0001245679999999999999999999999863
Q ss_pred --------CCcEEEEEEeCCCC-------------CcchhhhcceeEEE
Q 000818 604 --------PQRVVFIFITTDID-------------NVPRSIQSRCQKYL 631 (1268)
Q Consensus 604 --------p~~vVfILaTn~~e-------------KL~pAL~SRcq~I~ 631 (1268)
+.++.++.++|... .++++|++|+..|.
T Consensus 154 kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif 202 (331)
T PF00493_consen 154 KAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIF 202 (331)
T ss_dssp TSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEE
T ss_pred hhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEE
Confidence 35566677776443 36889999998753
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=62.01 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCcEEEEEeCCCCC---CHHHHHHHHHHHcCCCCcEEEEEEeCCCC--Ccchhhhcce--eEEEecCCCHHHHHHHHHHH
Q 000818 575 PRFKVFVIDECHLL---PSKTWLAFLKFLEEPPQRVVFIFITTDID--NVPRSIQSRC--QKYLFNKIKDGDIVARLRKI 647 (1268)
Q Consensus 575 g~~KVIIIDEaD~L---S~ea~naLLK~LEepp~~vVfILaTn~~e--KL~pAL~SRc--q~I~F~pLs~eEI~~iL~ki 647 (1268)
.+..|+||||+..+ .....+.|...++.+ ..+|++++... .+...|..+. .++++.+-+.+++...+.+.
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~---~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDSE---KPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhCC---CeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 35679999997544 334466777777543 45666666532 4556666654 66888888888887777654
Q ss_pred H
Q 000818 648 S 648 (1268)
Q Consensus 648 a 648 (1268)
.
T Consensus 172 ~ 172 (174)
T PRK13695 172 L 172 (174)
T ss_pred H
Confidence 3
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0018 Score=75.77 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..+|+.|.||||||.+|-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468999999999999999999998
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0074 Score=77.15 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=56.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcCh-----------HHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGL-----------DRVRYI 562 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gI-----------d~IReL 562 (1268)
+.++++|+||||||++++++.+.+..... ...++-..++ .+.. ..+..+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-------------------~~~v~l~ApT-g~AA~~L~e~~g~~a~Tih~l 398 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-------------------LLPVGLAAPT-GRAAKRLGEVTGLTASTIHRL 398 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-------------------CceEEEEeCc-hHHHHHHHHhcCCccccHHHH
Confidence 46899999999999999999888742110 0111111111 0101 112222
Q ss_pred HHHHHcCCC----CCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 563 LKHLSAGLP----SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 563 IEea~~~pp----~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
+........ .......+|||||+.|+....+..|++.+. ....+||+..
T Consensus 399 L~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD 451 (720)
T TIGR01448 399 LGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVGD 451 (720)
T ss_pred hhccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEECc
Confidence 221100000 001346799999999999998888888764 3455666653
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0033 Score=74.00 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
|..+...+.+++... -+..+++.||.|||||++.++|...+.
T Consensus 6 Q~~~~~~v~~~~~~~-~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 6 QRRVFDTVIEAIENE-EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHcc-CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 567777777777764 357889999999999999999998874
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0093 Score=74.55 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCC
Q 000818 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~ 615 (1268)
...||||||+-|+....+..|++.+. ..+.+|++...
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~ 295 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDK 295 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcC---CCCEEEEECCh
Confidence 45699999999999988888888774 35667777653
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.037 Score=63.06 Aligned_cols=151 Identities=12% Similarity=0.214 Sum_probs=83.7
Q ss_pred ccCcHHHHHHH---HHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEc
Q 000818 473 LIGQNIVVQSL---VNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVD 549 (1268)
Q Consensus 473 LVGQe~vv~tL---k~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEID 549 (1268)
||--+++++.+ .+.+... ..+.||.|..|+||.++++..|--. +..++++.
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~--~Gh~LLvG~~GsGr~sl~rLaa~i~------------------------~~~~~~i~ 63 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQP--RGHALLVGVGGSGRQSLARLAAFIC------------------------GYEVFQIE 63 (268)
T ss_dssp ----HHHHHHHHHHHHHHCST--TEEEEEECTTTSCHHHHHHHHHHHT------------------------TEEEE-TT
T ss_pred eeeHHHHHHHHHHHHHHHcCC--CCCeEEecCCCccHHHHHHHHHHHh------------------------ccceEEEE
Confidence 34444444443 4444443 3677999999999999999554333 45666766
Q ss_pred CCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHH---HH------------------HHH----------
Q 000818 550 GTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTW---LA------------------FLK---------- 598 (1268)
Q Consensus 550 aSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~---na------------------LLK---------- 598 (1268)
....-++.++++-++.+..... ..+...|++|.|.+....... |. ++.
T Consensus 64 ~~~~y~~~~f~~dLk~~~~~ag-~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~ 142 (268)
T PF12780_consen 64 ITKGYSIKDFKEDLKKALQKAG-IKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEG 142 (268)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHH-CS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT
T ss_pred eeCCcCHHHHHHHHHHHHHHHh-ccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcC
Confidence 5554445555444433322111 346677888888776532211 11 111
Q ss_pred -----------HHcCCCCcEEEEEEeCCCC-------CcchhhhcceeEEEecCCCHHHHHHHHHHHHHh
Q 000818 599 -----------FLEEPPQRVVFIFITTDID-------NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAE 650 (1268)
Q Consensus 599 -----------~LEepp~~vVfILaTn~~e-------KL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakk 650 (1268)
+++.-..+..+|++-+... ...|+|.++|.+..|.+-+.+.+..+-...+..
T Consensus 143 ~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 143 ISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp --SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred CCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 1112234555665544332 247899999999999999998888877666544
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.01 Score=76.19 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=57.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC--------CcCh--HHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN--------KKGL--DRVRYIL 563 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs--------~~gI--d~IReLI 563 (1268)
..++|.|++|||||++++.+...+... +..++.+-++. ..++ ..|..++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~---------------------g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA---------------------GYRVIGAALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC---------------------CCeEEEEeCcHHHHHHHHhccCCceeeHHHHH
Confidence 468999999999999999998776321 12333332211 0010 1122222
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEe
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaT 613 (1268)
..+.... .......||||||+.|+....+..|++..... ...+||+.
T Consensus 428 ~~~~~~~-~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~--~~kliLVG 474 (744)
T TIGR02768 428 YAWANGR-DLLSDKDVLVIDEAGMVGSRQMARVLKEAEEA--GAKVVLVG 474 (744)
T ss_pred hhhccCc-ccCCCCcEEEEECcccCCHHHHHHHHHHHHhc--CCEEEEEC
Confidence 2211111 11346789999999999998888888876654 34455554
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0052 Score=66.66 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccC---------CCccEEEEcCCCCcChHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG---------KSRNFMEVDGTNKKGLDRVRYIL 563 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG---------~s~dfIEIDaSs~~gId~IReLI 563 (1268)
|..++|.||.|+||||++-.||..+.-. ..+++..|..+.++... .+.+|+...... ...+.+++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~-~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES-DPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS-CHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch-hhHHHHHHHH
Confidence 3578999999999999999999888432 12222222222221110 011211111000 0111222333
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcC-CCCcEEEEEEeCCCCCcchhhhcc---e--eEEEecCC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEE-PPQRVVFIFITTDIDNVPRSIQSR---C--QKYLFNKI 635 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEe-pp~~vVfILaTn~~eKL~pAL~SR---c--q~I~F~pL 635 (1268)
+.+.. .++.+||||-+.+...+ ....|.++++. .+..+.||+.++....-...+..+ + .-+-|.++
T Consensus 77 ~~~~~------~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKl 150 (196)
T PF00448_consen 77 EKFRK------KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKL 150 (196)
T ss_dssp HHHHH------TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEEST
T ss_pred HHHhh------cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEee
Confidence 33321 23559999998877643 34455554443 356788888777654322233222 1 23556666
Q ss_pred CHH
Q 000818 636 KDG 638 (1268)
Q Consensus 636 s~e 638 (1268)
+..
T Consensus 151 Det 153 (196)
T PF00448_consen 151 DET 153 (196)
T ss_dssp TSS
T ss_pred cCC
Confidence 653
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.022 Score=58.46 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 475 GQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.|..++..+.+.+....-...+||.+|.|+|||.++-.++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 377888888888887622468999999999999999987777753
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0062 Score=69.65 Aligned_cols=198 Identities=12% Similarity=0.131 Sum_probs=104.1
Q ss_pred CCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEE
Q 000818 468 IFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFME 547 (1268)
Q Consensus 468 ~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIE 547 (1268)
....++++-..+.+.+....-..+.+....+||-+|.|||+.++-++..-.........||+.- ..++.
T Consensus 69 ~~~~~~l~tkt~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a-----------~~~i~ 137 (297)
T COG2842 69 KLAPDFLETKTVRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTA-----------LVLIL 137 (297)
T ss_pred cccccccccchhHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCccceeecCChhhHH-----------HHHHH
Confidence 3566777766653333322222223346899999999999999999766422222223333221 01110
Q ss_pred EcCCCCcC--hHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCc------
Q 000818 548 VDGTNKKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV------ 619 (1268)
Q Consensus 548 IDaSs~~g--Id~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL------ 619 (1268)
+......+ -..+..+++..... ..+..+.|++||++.|...+++.|.+..++.+..+++|........+
T Consensus 138 ~i~~~~~~~~~~~~~d~~~~~~~~---l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~ 214 (297)
T COG2842 138 IICAAAFGATDGTINDLTERLMIR---LRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDE 214 (297)
T ss_pred HHHHHHhcccchhHHHHHHHHHHH---HccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHhccccchHH
Confidence 00000000 01122222222211 14566799999999999999999999999986666555543311111
Q ss_pred chhhhcceeE---EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000818 620 PRSIQSRCQK---YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 620 ~pAL~SRcq~---I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqLsl 683 (1268)
..-+.+|..+ +...-++..++..+...... .+.+..+..+.....|++|.+...|.....
T Consensus 215 ~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 215 LSRLYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred HHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhh
Confidence 1222333221 11111222333333322221 156777777888889988887776665543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0081 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.++++||+|+|||.++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5799999999999999999888753
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.013 Score=69.68 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
...++|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
|
|
| >PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction [] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.037 Score=52.00 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhhhcccCCCHHhHHHHHHHHHHHHHHH
Q 000818 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAE 779 (1268)
Q Consensus 700 v~eedifdLLdAIls~D~~~ALk~LreLle~G~dPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle~L~raL~iLsEaD 779 (1268)
.+++.+-++++.++.++..++...+++|+..|.++..|+.+|...+... .++.....+.++.++++|
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~-------------~~~~~~k~~i~~~la~~e 69 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVES-------------DIPDSQKAEILKILAEIE 69 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS-------------TSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh-------------hccHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999999999999999999888866521 233445667889999999
Q ss_pred HHhhccCCchHHHHHHHHHc
Q 000818 780 KQLRLSSERCTWFTATLLQL 799 (1268)
Q Consensus 780 kqLK~S~d~rl~LE~aLL~L 799 (1268)
+.|..|.++.+-|+.++.++
T Consensus 70 ~rl~~G~~e~lQl~alva~~ 89 (89)
T PF08542_consen 70 YRLSDGASEILQLEALVAAF 89 (89)
T ss_dssp HHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHhhC
Confidence 99999999999999988753
|
PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A. |
| >PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=63.43 Aligned_cols=102 Identities=23% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCC
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~ 572 (1268)
..+++|.|+-|+|||++.+.|...... +. +.... ..+.+..+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~~~------------------------d~--~~~~~--~kd~~~~l~~~------- 96 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEYFS------------------------DS--INDFD--DKDFLEQLQGK------- 96 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHhcc------------------------Cc--cccCC--CcHHHHHHHHh-------
Confidence 357899999999999999999555321 00 11111 11222222222
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHc---------------CCCCcEEEEEEeCCCCCc-chhhhcceeEEEecC
Q 000818 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLE---------------EPPQRVVFIFITTDIDNV-PRSIQSRCQKYLFNK 634 (1268)
Q Consensus 573 ~~g~~KVIIIDEaD~LS~ea~naLLK~LE---------------epp~~vVfILaTn~~eKL-~pAL~SRcq~I~F~p 634 (1268)
-||.|||++.+.....+.|..++- +.|...+||.+||..+-| +++=-+|+..+.+..
T Consensus 97 -----~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 97 -----WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred -----HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 278999999999777777777763 335778899999987744 456778888888776
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.027 Score=68.02 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++|.||.|+||||++..||..+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998873
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.023 Score=74.64 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=56.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC--------CcCh--HHHHHHHH
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN--------KKGL--DRVRYILK 564 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs--------~~gI--d~IReLIE 564 (1268)
.++|.|++|||||++.+.+...+... +..++-+-++. ..|+ ..|..++.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~---------------------G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~ 422 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAA---------------------GYEVRGAALSGIAAENLEGGSGIASRTIASLEH 422 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc---------------------CCeEEEecCcHHHHHHHhhccCcchhhHHHHHh
Confidence 57899999999999998887665311 12233222111 0111 12223322
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEE
Q 000818 565 HLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611 (1268)
Q Consensus 565 ea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfIL 611 (1268)
.+.... .......||||||+.|+....+..|++..+.....++||.
T Consensus 423 ~~~~~~-~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLVG 468 (988)
T PRK13889 423 GWGQGR-DLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVG 468 (988)
T ss_pred hhcccc-cccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEEC
Confidence 211111 1234567999999999999999999988776544444443
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=73.51 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCC
Q 000818 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 577 ~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~ 616 (1268)
..||||||+-|+....+..|++.+. .++.+||+....
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 3699999999999888888888774 356777776543
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0084 Score=61.08 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=18.2
Q ss_pred CeEEEEcCCCchHHHH-HHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTST-AKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSL-ARaLAkaL 517 (1268)
..+++.||+|+|||.+ +..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 5689999999999994 44444444
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.18 Score=59.33 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
+..+-|.|+||+||||++..++..+..
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999853
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.024 Score=67.79 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=58.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC-ccccc--------ccccCCCccEEEEcCCCCcChHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY-CRECN--------DFISGKSRNFMEVDGTNKKGLDRVRYILK 564 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~-C~sC~--------~i~sG~s~dfIEIDaSs~~gId~IReLIE 564 (1268)
..++|.||.|+||||++..||..+..... ..+.. |...+ .+....+.+++... ..+.+...++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk---kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-----d~~~L~~aL~ 313 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK---TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-----DEAAMTRALT 313 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC---cEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-----CHHHHHHHHH
Confidence 57899999999999999999988742211 00000 10000 00001122222111 1234444444
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCC-CCcEEEEEEeC
Q 000818 565 HLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEP-PQRVVFIFITT 614 (1268)
Q Consensus 565 ea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEep-p~~vVfILaTn 614 (1268)
.+.. ..++.+||||-+.... ......|.++++.. |..++|++.++
T Consensus 314 ~lk~-----~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 314 YFKE-----EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred HHHh-----ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 4432 1246799999998876 33466777777543 34566666443
|
|
| >KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.027 Score=76.89 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcC---CCCcChH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG---TNKKGLD 557 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDa---Ss~~gId 557 (1268)
..+..++..++. .+||.||.++|||+++.-+|++.. ..|..+....+.++.++=+ ++..|--
T Consensus 430 a~~~~a~~~~~~--pillqG~tssGKtsii~~la~~~g-------------~~~vrinnhehtd~qeyig~y~~~~~g~l 494 (1856)
T KOG1808|consen 430 ADLARAISSGKF--PILLQGPTSSGKTSIIKELARATG-------------KNIVRINNHEHTDLQEYIGTYVADDNGDL 494 (1856)
T ss_pred HHHHHHHhcCCC--CeEEecCcCcCchhHHHHHHHHhc-------------cCceehhccccchHHHHHHhhhcCCCCCe
Confidence 344455556654 589999999999999999999982 1222222222222211100 1111101
Q ss_pred HH--HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC-----CCcEEE--------EEEeCCCC-----
Q 000818 558 RV--RYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----PQRVVF--------IFITTDID----- 617 (1268)
Q Consensus 558 ~I--ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-----p~~vVf--------ILaTn~~e----- 617 (1268)
.+ ..++..++. ...+|+||++....+.+++|.++++.. |.+..+ +|+|-++.
T Consensus 495 ~freg~LV~Alr~--------G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~g 566 (1856)
T KOG1808|consen 495 VFREGVLVQALRN--------GDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGG 566 (1856)
T ss_pred eeehhHHHHHHHh--------CCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccch
Confidence 11 123334332 348999999999999999999999862 222222 45555554
Q ss_pred --CcchhhhcceeEEEecCCCHHHHHHHHHHHH
Q 000818 618 --NVPRSIQSRCQKYLFNKIKDGDIVARLRKIS 648 (1268)
Q Consensus 618 --KL~pAL~SRcq~I~F~pLs~eEI~~iL~kia 648 (1268)
.+-.++.+|+..++|..+..+++..++..++
T Consensus 567 rk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 567 RKILSRALRNRFIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcccccchhhhhhhcCchhhhhhhcccc
Confidence 2456788888889999999988888876654
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.16 Score=59.57 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=62.2
Q ss_pred ccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC
Q 000818 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN 552 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs 552 (1268)
++....+...|..+++.+ ..+||+|++|+||||++++|+..+..... ......-..+....+.+.+.+-...
T Consensus 143 ~~~~~~~~~~L~~~v~~~---~nili~G~tgSGKTTll~aL~~~ip~~~r-----i~tiEd~~El~l~~~~n~~~~~~~~ 214 (332)
T PRK13900 143 LLAEKKIKEFLEHAVISK---KNIIISGGTSTGKTTFTNAALREIPAIER-----LITVEDAREIVLSNHPNRVHLLASK 214 (332)
T ss_pred hhhhHHHHHHHHHHHHcC---CcEEEECCCCCCHHHHHHHHHhhCCCCCe-----EEEecCCCccccccCCCEEEEEecC
Confidence 344445556666666655 36999999999999999999988743111 0111111222211123433332111
Q ss_pred ---CcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC
Q 000818 553 ---KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603 (1268)
Q Consensus 553 ---~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep 603 (1268)
..+.-.+.++++.+... +..+|||.|+.. .+++ .+++.+..+
T Consensus 215 ~~~~~~~~~~~~ll~~~LR~------~PD~IivGEiR~--~ea~-~~l~a~~tG 259 (332)
T PRK13900 215 GGQGRAKVTTQDLIEACLRL------RPDRIIVGELRG--AEAF-SFLRAINTG 259 (332)
T ss_pred CCCCcCcCcHHHHHHHHhcc------CCCeEEEEecCC--HHHH-HHHHHHHcC
Confidence 01111245566555432 234899999874 4555 457777765
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0078 Score=58.70 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.|+|.|++|+||||+|+.||+.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 479999999999999999999984
|
... |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.081 Score=55.54 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.++|+||||+||||+|+.||+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~ 25 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGF 25 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3789999999999999999999853
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.056 Score=61.32 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG 540 (1268)
+..+..+..|+++--.+..++.|..++...+ ..++|.||+|+||||+++++...+...... .....+-..+. -
T Consensus 50 ~~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~--GlilisG~tGSGKTT~l~all~~i~~~~~~----iitiEdp~E~~-~ 122 (264)
T cd01129 50 LDKKNQILDLEKLGLKPENLEIFRKLLEKPH--GIILVTGPTGSGKTTTLYSALSELNTPEKN----IITVEDPVEYQ-I 122 (264)
T ss_pred eCCccCCCCHHHcCCCHHHHHHHHHHHhcCC--CEEEEECCCCCcHHHHHHHHHhhhCCCCCe----EEEECCCceec-C
Confidence 3333335577787667777888888876543 468999999999999999998887421100 00000000010 0
Q ss_pred CCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 541 KSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 541 ~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.+..-++++... +. .+.+++..+.. .+..+|+|.|+-. .+.+.++++..... + ++++|-+..
T Consensus 123 ~~~~q~~v~~~~--~~-~~~~~l~~~lR------~~PD~i~vgEiR~--~e~a~~~~~aa~tG--h--~v~tTlHa~ 184 (264)
T cd01129 123 PGINQVQVNEKA--GL-TFARGLRAILR------QDPDIIMVGEIRD--AETAEIAVQAALTG--H--LVLSTLHTN 184 (264)
T ss_pred CCceEEEeCCcC--Cc-CHHHHHHHHhc------cCCCEEEeccCCC--HHHHHHHHHHHHcC--C--cEEEEeccC
Confidence 112223333221 11 23344444432 2345999999864 35556666766654 2 356665544
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.036 Score=73.40 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=59.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC--------CcCh--HHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN--------KKGL--DRVRYIL 563 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs--------~~gI--d~IReLI 563 (1268)
...++.|++|||||++.+.+...+... +..++-+-++. ..|+ ..|..++
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~---------------------G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l 456 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAA---------------------GYRVVGGALAGKAAEGLEKEAGIQSRTLSSWE 456 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc---------------------CCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHH
Confidence 468999999999999999998876321 22344332211 0011 0121211
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEe
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaT 613 (1268)
-...... .......||||||+.|+....+..|++.++.....++||.=.
T Consensus 457 l~~~~~~-~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 457 LRWNQGR-DQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred hhhccCc-cCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECCH
Confidence 1111100 113456799999999999999999999998664455554433
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.032 Score=58.31 Aligned_cols=23 Identities=43% Similarity=0.395 Sum_probs=20.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.+|++||||+|||+++..|+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37999999999999999988775
|
A related protein is found in archaea. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.039 Score=64.74 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+..++|+||+|+||||++..+|..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998874
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0053 Score=61.39 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.++|+||||+||||+|+.+++.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999999999887
|
... |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.04 Score=68.55 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHH
Q 000818 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA 510 (1268)
Q Consensus 478 ~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLA 510 (1268)
...+.|..+++.++ ++++.|+.|+||||=+
T Consensus 54 ~~r~~il~~ve~nq---vlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQ---VLIVIGETGSGKSTQI 83 (674)
T ss_pred HHHHHHHHHHHHCC---EEEEEcCCCCCccccH
Confidence 45567788888775 5899999999999833
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.02 Score=60.02 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..|.+|++|.||||||+++..+|..+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 345889999999999999999999887
|
|
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.28 Score=59.81 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=85.0
Q ss_pred chhhhhhcCCCCCccccCcHHHHHHHHHHHHcCC---C--------CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCC
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGR---I--------APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTK 526 (1268)
Q Consensus 458 ~r~L~eKYRP~tFdDLVGQe~vv~tLk~aIksgR---i--------~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~ 526 (1268)
|+.+.....| .|.|++++++++.-.+-.|. + .-.+||.|.|||-|+.+.+.+-+--
T Consensus 322 Ye~is~sIAP----SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs--------- 388 (729)
T KOG0481|consen 322 YERISKSIAP----SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS--------- 388 (729)
T ss_pred HHHHhhccCc----hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC---------
Confidence 4455566666 45689999888877665431 1 1268999999999999998874332
Q ss_pred CCCCcccccc-cccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC--
Q 000818 527 PCGYCRECND-FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-- 603 (1268)
Q Consensus 527 PCg~C~sC~~-i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep-- 603 (1268)
|.++..+-.. -.+|-...++. |+.. |++.-+ ......+...||-|||+|+|.++..-++-..||.-
T Consensus 389 PIaVYTSGKGSSAAGLTASV~R-D~~t-------ReFylE---GGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTI 457 (729)
T KOG0481|consen 389 PIAVYTSGKGSSAAGLTASVIR-DPST-------REFYLE---GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTI 457 (729)
T ss_pred ceEEEecCCCcccccceeeEEe-cCCc-------ceEEEe---cceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhH
Confidence 2111110000 00011111110 1110 011000 00112356779999999999988777777777642
Q ss_pred -----------CCcEEEEEEeCCCC-------------CcchhhhcceeEEEecCC
Q 000818 604 -----------PQRVVFIFITTDID-------------NVPRSIQSRCQKYLFNKI 635 (1268)
Q Consensus 604 -----------p~~vVfILaTn~~e-------------KL~pAL~SRcq~I~F~pL 635 (1268)
..++.++.++|.+. .+.++|+||+..|..-+-
T Consensus 458 SIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD 513 (729)
T KOG0481|consen 458 SIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKD 513 (729)
T ss_pred HHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEec
Confidence 12333334444331 367899999988665443
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.082 Score=72.29 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-----
Q 000818 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN----- 552 (1268)
Q Consensus 478 ~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs----- 552 (1268)
.....+..++.... ..++|.|.+|||||++++.+...+..... .....++-+-++.
T Consensus 839 ~Qr~Av~~iLts~d--r~~~IqG~AGTGKTT~l~~i~~~~~~l~e-----------------~~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 839 GQRAATRMILETSD--RFTVVQGYAGVGKTTQFRAVMSAVNMLPE-----------------SERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred HHHHHHHHHHhCCC--ceEEEEeCCCCCHHHHHHHHHHHHHHHhh-----------------ccCceEEEEechHHHHHH
Confidence 33344444454332 46899999999999999988776531100 0012233332111
Q ss_pred --CcCh--HHHHHHHHHHH---cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCC-----cc
Q 000818 553 --KKGL--DRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN-----VP 620 (1268)
Q Consensus 553 --~~gI--d~IReLIEea~---~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eK-----L~ 620 (1268)
..|+ ..|..++.... ...........||||||+-|+....+..|++.++.....++||.=+....- .+
T Consensus 900 L~e~Gi~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~aG~~F 979 (1623)
T PRK14712 900 MRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPF 979 (1623)
T ss_pred HHHhCchHhhHHHHhccccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcCCCCCCHHH
Confidence 0111 12333332110 000001134679999999999999999999998864344444443333332 23
Q ss_pred hhhhcc--eeEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000818 621 RSIQSR--CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL 681 (1268)
Q Consensus 621 pAL~SR--cq~I~F~pLs~eEI~~iL~kiakkEgi~Id~dALelLA~~S~GDLRdAinlLEqL 681 (1268)
..+..+ ...+.+..+ ++ + .++....+...+.|+...|+..|+++
T Consensus 980 ~~lq~~~~~~ta~L~eI--------~R----Q-----~~elr~AV~~~~~g~~~~AL~~L~~~ 1025 (1623)
T PRK14712 980 RLQQTRSAADVVIMKEI--------VR----Q-----TPELREAVYSLINRDVERALSGLERV 1025 (1623)
T ss_pred HHHHHcCCCCeEEeCee--------ec----C-----CHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 333332 222322111 11 1 23444555556678888888888753
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.055 Score=66.79 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..++|+||.|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
|
|
| >TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.1 Score=59.99 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=76.0
Q ss_pred CccccC-cHHHHHHHHHHHH-----cCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc
Q 000818 470 FDELIG-QNIVVQSLVNTIS-----RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 470 FdDLVG-Qe~vv~tLk~aIk-----sgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~ 543 (1268)
+.++.+ ..+.+..|.+++. ..+....++|+|+.|+||++++.++.+.+....
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~---------------------- 104 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYA---------------------- 104 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhh----------------------
Confidence 445554 3445666666653 234456899999999999999999977663111
Q ss_pred cEEEEcCCCCcChHHHHH-HHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHc--------------CCCCcEE
Q 000818 544 NFMEVDGTNKKGLDRVRY-ILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLE--------------EPPQRVV 608 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IRe-LIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LE--------------epp~~vV 608 (1268)
+.+..+ ..++.+.. -++.+ ...++++++++|++.-.......|..+.. +......
T Consensus 105 --~~~~~~--~~~~~~~~~~f~~a------~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~ 174 (304)
T TIGR01613 105 --TTAVAS--LKMNEFQEHRFGLA------RLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFT 174 (304)
T ss_pred --ccCCcc--hhhhhccCCCchhh------hhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeE
Confidence 000000 00011000 00000 12456799999987532222233333321 1124677
Q ss_pred EEEEeCCCCCc---chhhhcceeEEEecCC
Q 000818 609 FIFITTDIDNV---PRSIQSRCQKYLFNKI 635 (1268)
Q Consensus 609 fILaTn~~eKL---~pAL~SRcq~I~F~pL 635 (1268)
+|++||+...+ ..++.+|..+|.|...
T Consensus 175 ~i~~tN~~P~~~~~~~a~~RR~~vi~f~~~ 204 (304)
T TIGR01613 175 LVQSTNHLPRIRGFDGGIKRRLRIIPFTKV 204 (304)
T ss_pred EEEEcCCCCccCCCChhheeeEEEEeccCc
Confidence 89999998765 4689999999998643
|
This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.11 Score=62.07 Aligned_cols=141 Identities=14% Similarity=0.194 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcC---CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCc
Q 000818 478 IVVQSLVNTISRG---RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKK 554 (1268)
Q Consensus 478 ~vv~tLk~aIksg---Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~ 554 (1268)
.+...+..++... .....+.|.||.|+||||+.--||..+.-... .....+|.+|.--..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----------------~~kVaiITtDtYRIG 247 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-----------------KKKVAIITTDTYRIG 247 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-----------------CcceEEEEeccchhh
Confidence 3444444444433 22467999999999999998888887741110 112334444322111
Q ss_pred ChHH-----------------HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcC-CCCcEEEEEEeC
Q 000818 555 GLDR-----------------VRYILKHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEE-PPQRVVFIFITT 614 (1268)
Q Consensus 555 gId~-----------------IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEe-pp~~vVfILaTn 614 (1268)
.+++ ..++.+.+.. ...+.+|+||=+.+=.. .....|..++.. .+..+.|++.++
T Consensus 248 A~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 248 AVEQLKTYADIMGVPLEVVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred HHHHHHHHHHHhCCceEEecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC
Confidence 1111 1233333332 34567999998887443 234455555543 356788888888
Q ss_pred CCCCcchhhhcceeE-----EEecCCCHHHH
Q 000818 615 DIDNVPRSIQSRCQK-----YLFNKIKDGDI 640 (1268)
Q Consensus 615 ~~eKL~pAL~SRcq~-----I~F~pLs~eEI 640 (1268)
...+-...|..++.. +-|.++++...
T Consensus 323 ~K~~dlkei~~~f~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 323 TKYEDLKEIIKQFSLFPIDGLIFTKLDETTS 353 (407)
T ss_pred cchHHHHHHHHHhccCCcceeEEEcccccCc
Confidence 777666666665532 45666665433
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.12 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.++|.||||+||||+++.||+.+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~ 26 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGM 26 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3789999999999999999999853
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.22 Score=60.42 Aligned_cols=136 Identities=15% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccc---------cccCCCccEEEEcCCCCcChHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND---------FISGKSRNFMEVDGTNKKGLDRVRYIL 563 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~---------i~sG~s~dfIEIDaSs~~gId~IReLI 563 (1268)
+..++|+|++|+||||++..||..+.... ..++..+..... +......+|+...... ..+.-.++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~-dp~~i~~~~l 175 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTES-DPVKIASEGV 175 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCC-CHHHHHHHHH
Confidence 45789999999999999999998885322 122222111111 1222334554433211 1122233444
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHcC-CCCcEEEEEEeCCCCC---cchhhhcce--eEEEecCC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPSK--TWLAFLKFLEE-PPQRVVFIFITTDIDN---VPRSIQSRC--QKYLFNKI 635 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~e--a~naLLK~LEe-pp~~vVfILaTn~~eK---L~pAL~SRc--q~I~F~pL 635 (1268)
+.+.. ..+.+||||=+..+..+ ....|.++.+. .|..++||+-+..... ...++.... .-+-|.++
T Consensus 176 ~~~~~------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKl 249 (429)
T TIGR01425 176 EKFKK------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKL 249 (429)
T ss_pred HHHHh------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECc
Confidence 44432 35679999999887643 45566665543 2456667765543322 223333322 22556666
Q ss_pred CHH
Q 000818 636 KDG 638 (1268)
Q Consensus 636 s~e 638 (1268)
+..
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 653
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..++|+|++|+||||+|+.|++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999987
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.076 Score=64.43 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc---------cCCCccEEEEcCCCCcChHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI---------SGKSRNFMEVDGTNKKGLDRVRYIL 563 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~---------sG~s~dfIEIDaSs~~gId~IReLI 563 (1268)
+..++|+|++|+||||++..||..+.... ..++..+..|.... ...+.+++... ......+.++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g---~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~-~~~d~~~i~~~al 170 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKG---LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP-DNKDAVEIAKEGL 170 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC-CccCHHHHHHHHH
Confidence 46789999999999999999999885321 12222222222111 11122332211 1111122234444
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHcC-CCCcEEEEEEeC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEE-PPQRVVFIFITT 614 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~--ea~naLLK~LEe-pp~~vVfILaTn 614 (1268)
+.+. .+.|||||.+..+.. .....|..+.+- .|..++||+-++
T Consensus 171 ~~~~--------~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~ 216 (437)
T PRK00771 171 EKFK--------KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDAT 216 (437)
T ss_pred HHhh--------cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecc
Confidence 4432 136999999977653 334444444332 234566665543
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0084 Score=65.47 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=44.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~ 573 (1268)
.-++|||++|+|||++|..+-+-|. ...+.+. ..+......+.+.+. ..+++.+.++.+...
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~-id~E~g~--------~~~~~~~~~~~i~i~-----s~~~~~~~~~~l~~~---- 65 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLF-IDTENGS--------DSLKFLDDGDVIPIT-----SWEDFLEALDELEED---- 65 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEE-EEeCCCc--------cchhhhcCCCeeCcC-----CHHHHHHHHHHHHhc----
Confidence 4689999999999999988833321 1111100 000000012233322 467777777776543
Q ss_pred CCCcEEEEEeCCCCC
Q 000818 574 SPRFKVFVIDECHLL 588 (1268)
Q Consensus 574 ~g~~KVIIIDEaD~L 588 (1268)
...+++||||-+..|
T Consensus 66 ~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 66 EADYDTIVIDSISWL 80 (213)
T ss_pred cCCCCEEEEECHHHH
Confidence 468999999987654
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.021 Score=62.64 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=20.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+.+++.||.|||||.+|-+.|..+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v 44 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELV 44 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999997764
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.093 Score=61.22 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC-ccccc--------ccccCCCccEEEEcCCCCcChHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY-CRECN--------DFISGKSRNFMEVDGTNKKGLDRVRYIL 563 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~-C~sC~--------~i~sG~s~dfIEIDaSs~~gId~IReLI 563 (1268)
+..++|.||+|+||||++..||..+.... ...+-. |+..+ .........++....... ....+.+.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~d-pa~~v~~~l 189 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGAD-PASVAFDAI 189 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCC-HHHHHHHHH
Confidence 46889999999999999999999885321 111111 11111 011122334443321111 011122222
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHH---HH----cCCCCcEEEEEEeCCCC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLPSKT--WLAFLK---FL----EEPPQRVVFIFITTDID 617 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS~ea--~naLLK---~L----Eepp~~vVfILaTn~~e 617 (1268)
..+. ...+.+||||=+..+..+. .+.|.+ ++ ...|..+++|+-++...
T Consensus 190 ~~~~------~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 190 QAAK------ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHHH------hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 2221 2457799999998876322 233333 33 24566777888766443
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.22 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
-+++.||+|+||||+|+.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999999853
|
|
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.34 Score=56.35 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=38.6
Q ss_pred EEEecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHH
Q 000818 629 KYLFNKIKDGDIVARLRKISAEENL---NVEPDALDLIALNADGSLRDAE 675 (1268)
Q Consensus 629 ~I~F~pLs~eEI~~iL~kiakkEgi---~Id~dALelLA~~S~GDLRdAi 675 (1268)
.|.+.+++.+|+...+.......-+ ..++...+.+...++||+|.+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 7899999999999999888776543 3567778888888899998765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.084 Score=60.28 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.1
Q ss_pred HcCCCCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 488 SRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 488 ksgRi~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..+++ ..++|.||+|+||||+.+.++..+.
T Consensus 107 ~~~~~-~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 107 RNNRV-LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred hCCCe-eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34443 6789999999999999999998874
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.02 Score=61.98 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaL 517 (1268)
+++.|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998883
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.072 Score=73.55 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-------C
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-------K 553 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-------~ 553 (1268)
..+..++... ...++|.|.+|||||++++.+...+...... ....++-+-++. .
T Consensus 974 ~Av~~il~s~--dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~-----------------~~~~V~glAPTgrAAk~L~e 1034 (1747)
T PRK13709 974 AATRMILEST--DRFTVVQGYAGVGKTTQFRAVMSAVNTLPES-----------------ERPRVVGLGPTHRAVGEMRS 1034 (1747)
T ss_pred HHHHHHHhCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcc-----------------cCceEEEECCcHHHHHHHHh
Confidence 3344444432 2479999999999999999998876321000 011222221111 0
Q ss_pred cCh--HHHHHHHHHHH---cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 554 KGL--DRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 554 ~gI--d~IReLIEea~---~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
.|+ ..|..++.... ...........||||||+-|+.......|++.++.....++||.=+.
T Consensus 1035 ~Gi~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~ 1100 (1747)
T PRK13709 1035 AGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTD 1100 (1747)
T ss_pred cCcchhhHHHHhcccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchH
Confidence 111 12333332210 00000123467999999999999999999999886544444444333
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.048 Score=59.33 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=69.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCC--------CCCCCCCcccccccccCCCccEEEEcC------CC-CcChHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATD--------QTKPCGYCRECNDFISGKSRNFMEVDG------TN-KKGLDR 558 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e--------~~~PCg~C~sC~~i~sG~s~dfIEIDa------Ss-~~gId~ 558 (1268)
..+++||++|.|||++|-.+|-........ .....++-.....+ ....++.... .. ......
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccCCCcHHHHHH
Confidence 568999999999999999998776443311 00011111111100 0111111110 00 011233
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH---HHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcce
Q 000818 559 VRYILKHLSAGLPSASPRFKVFVIDECHLLPSK---TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627 (1268)
Q Consensus 559 IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~e---a~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRc 627 (1268)
++..++.+.... ..+.+.+||+||+-....- ....++.+|+..|..+-+|+|..+.+ +.|...+
T Consensus 100 ~~~~~~~a~~~l--~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p---~~Lie~A 166 (191)
T PRK05986 100 AREGWEEAKRML--ADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP---RELIEAA 166 (191)
T ss_pred HHHHHHHHHHHH--hCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhC
Confidence 444555544332 3578999999998543211 14578888888889999999987654 4444444
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.053 Score=65.37 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=66.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc---------cCCCccEEEEcCCCCcChHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI---------SGKSRNFMEVDGTNKKGLDRVRYILK 564 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~---------sG~s~dfIEIDaSs~~gId~IReLIE 564 (1268)
..++|.||+|+||||++..||..+..... ...+...-...... ...+.+++ ....+..+.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--------~~~~~~~l~~ 293 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--------PVKDIKKFKE 293 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHHHHHHHHHhcCCCee--------ehHHHHHHHH
Confidence 46899999999999999999986532110 00000000000000 00011111 1122334444
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcC----CCCcEEEEEEeCCCCCcchhhhcce-----eEEEec
Q 000818 565 HLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEE----PPQRVVFIFITTDIDNVPRSIQSRC-----QKYLFN 633 (1268)
Q Consensus 565 ea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEe----pp~~vVfILaTn~~eKL~pAL~SRc-----q~I~F~ 633 (1268)
.+. ..++.+||||=+.... ......|.+++.. .+..++||+.++....-...+..++ .-+-|.
T Consensus 294 ~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 294 TLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred HHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 432 1356799999877654 4445666666542 2456778887665543223333332 236667
Q ss_pred CCCHHH
Q 000818 634 KIKDGD 639 (1268)
Q Consensus 634 pLs~eE 639 (1268)
+++...
T Consensus 368 KLDEt~ 373 (432)
T PRK12724 368 KLDEAD 373 (432)
T ss_pred cccCCC
Confidence 776544
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.34 Score=54.68 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=44.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHcCC-CCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHH
Q 000818 576 RFKVFVIDECHLLPSKTWLAFLKFLEEP-PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~ea~naLLK~LEep-p~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~k 646 (1268)
..-+||+|++..- .-..+.|..++-.+ .-++.+|+++.....+++.++.-+..+-+-..+..++..+++.
T Consensus 98 ~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 98 PRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRN 168 (241)
T ss_pred CCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHh
Confidence 3569999998641 11223455555443 2367788888888889999988777655335666665544443
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.33 Score=58.99 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCC-cccccc--------cccCCCccEEEEcCCCCcChHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY-CRECND--------FISGKSRNFMEVDGTNKKGLDRVRYIL 563 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~-C~sC~~--------i~sG~s~dfIEIDaSs~~gId~IReLI 563 (1268)
+..++|+|++|+||||++..||..+..... ..+... |...+. +....+.+++...... ...+-..+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~-dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQ-DPVDIAKAAL 176 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCC-CHHHHHHHHH
Confidence 467899999999999999999988743300 111111 111111 1112233444332111 1122223344
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcC-CCCcEEEEEEeC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEE-PPQRVVFIFITT 614 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEe-pp~~vVfILaTn 614 (1268)
+.+. ...+.+||||=+..+. ......|.++.+. .|..++||+-+.
T Consensus 177 ~~a~------~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 177 EEAK------ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred HHHH------hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 4332 2356799999998875 3334444444432 244565555443
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.083 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+.+++|.||.|+||||++..||..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999877
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.058 Score=57.14 Aligned_cols=126 Identities=10% Similarity=0.138 Sum_probs=68.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCC--------CCCCCCCcccccccccCCCccEEEEcCC-----CC--cChHHH
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATD--------QTKPCGYCRECNDFISGKSRNFMEVDGT-----NK--KGLDRV 559 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e--------~~~PCg~C~sC~~i~sG~s~dfIEIDaS-----s~--~gId~I 559 (1268)
.+.+|+++|.|||++|-.+|-........ .....|+......+ ....++.+... .. ......
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCCCChHHHHHHH
Confidence 46778888999999999998776432211 00111221111111 01222221110 00 001122
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCH---HHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhccee
Q 000818 560 RYILKHLSAGLPSASPRFKVFVIDECHLLPS---KTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628 (1268)
Q Consensus 560 ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~---ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq 628 (1268)
+..++.+.... ..+.+.+||+||+-..-. -..+.++.+|+..|..+-+|+|..+. ++.|..++.
T Consensus 81 ~~~~~~a~~~~--~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~AD 147 (159)
T cd00561 81 AEGWAFAKEAI--ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEAAD 147 (159)
T ss_pred HHHHHHHHHHH--hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 33333333222 256789999999865421 12567888999989999999998774 355555543
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.056 Score=67.06 Aligned_cols=125 Identities=15% Similarity=0.259 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhh-cccCCCCCCCCCcccccccc---------------cC--C
Q 000818 480 VQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN-CVATDQTKPCGYCRECNDFI---------------SG--K 541 (1268)
Q Consensus 480 v~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLn-ce~~e~~~PCg~C~sC~~i~---------------sG--~ 541 (1268)
...|..+|+... ++++.|.+|+||||=+=.+..+.. +... ....| ..=+.+. .| .
T Consensus 270 kdell~av~e~Q---VLiI~GeTGSGKTTQiPQyL~EaGytk~g-k~Igc---TQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 270 KDELLKAVKEHQ---VLIIVGETGSGKTTQIPQYLYEAGYTKGG-KKIGC---TQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred HHHHHHHHHhCc---EEEEEcCCCCCccccccHHHHhcccccCC-ceEee---cCcchHHHHHHHHHHHHHhCccccccc
Confidence 456777777664 699999999999984433322211 1000 00011 0001110 01 1
Q ss_pred CccEEEEcCCCCcCh-HHH--HHHHHHHHcCCCCCCCCcEEEEEeCCCC--CCHHHHHHHHHHHcCCCCcEEEEEEe
Q 000818 542 SRNFMEVDGTNKKGL-DRV--RYILKHLSAGLPSASPRFKVFVIDECHL--LPSKTWLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 542 s~dfIEIDaSs~~gI-d~I--ReLIEea~~~pp~~~g~~KVIIIDEaD~--LS~ea~naLLK~LEepp~~vVfILaT 613 (1268)
+..+-.-|+.+...+ ..+ ..|+.++...| -.+.|-||||||+|. |+.+..-.|.+=+....+...+++.+
T Consensus 343 GYsIRFEdcTSekTvlKYMTDGmLlREfL~ep--dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsS 417 (902)
T KOG0923|consen 343 GYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP--DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISS 417 (902)
T ss_pred ceEEEeccccCcceeeeeecchhHHHHHhccc--cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeec
Confidence 222222244432211 111 23555555444 458899999999995 55666666666665555556555543
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.025 Score=60.80 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=38.0
Q ss_pred CcEEEEEeCCCCCCHHH-H-----HHHHHHHcCC-CCcEEEEEEeCCCCCcchhhhcceeE-EEecCC
Q 000818 576 RFKVFVIDECHLLPSKT-W-----LAFLKFLEEP-PQRVVFIFITTDIDNVPRSIQSRCQK-YLFNKI 635 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~ea-~-----naLLK~LEep-p~~vVfILaTn~~eKL~pAL~SRcq~-I~F~pL 635 (1268)
...|||||||+.+-+.. . ..++++|... ....-|||+|.++..+.+.|+..++. +.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 45699999999864322 1 2444666543 35788999999999999999988765 555544
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.48 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLn 518 (1268)
++|+|+||+||||+|+.|++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999984
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PF13337 Lon_2: Putative ATP-dependent Lon protease | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.13 Score=62.33 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=68.4
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
--|.|..|++- -.-..+..|.-.++.+ -+++=.||+|||||++=+-+.
T Consensus 182 ~G~eP~~~~~r-~Kl~~L~RLiPlVE~N---~NliELgPrGTGKS~vy~eiS---------------------------- 229 (457)
T PF13337_consen 182 IGYEPSGFSER-QKLLLLARLIPLVERN---YNLIELGPRGTGKSYVYKEIS---------------------------- 229 (457)
T ss_pred cCCCccccCHH-HHHHHHHhHHHhcccc---cceEEEcCCCCCceeehhhcC----------------------------
Confidence 45888888761 0111122233333322 357778999999999866652
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---HHHHHHHHHHHcCC---------CCcEEEE
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---SKTWLAFLKFLEEP---------PQRVVFI 610 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---~ea~naLLK~LEep---------p~~vVfI 610 (1268)
+..+-+.+... ....|+-.......-.-+.+.+|++||+..+. ++....|..+||.. ....-+|
T Consensus 230 p~~~liSGG~~----T~A~LFyn~~~~~~GlV~~~D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~v 305 (457)
T PF13337_consen 230 PYGILISGGQV----TVAKLFYNMSTGQIGLVGRWDVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMV 305 (457)
T ss_pred cccEEEECCCc----chHHheeeccCCcceeeeeccEEEEEeccCcccCChHHHHHHHHHHhccceeecccccccceeEE
Confidence 22333333221 12233322222211134667899999999886 56677888888754 3566778
Q ss_pred EEeCCCC
Q 000818 611 FITTDID 617 (1268)
Q Consensus 611 LaTn~~e 617 (1268)
|+.|-..
T Consensus 306 f~GNi~~ 312 (457)
T PF13337_consen 306 FVGNINQ 312 (457)
T ss_pred EEcCcCC
Confidence 8877653
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.043 Score=61.57 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHcC-CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCcc
Q 000818 466 KPIFFDELIGQNIVVQSLVNTISRG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544 (1268)
Q Consensus 466 RP~tFdDLVGQe~vv~tLk~aIksg-Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~d 544 (1268)
.+.++++++-.......+...+... +....+||.||+|+||||+++++...+.... .. .....+..++.. .+.+
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~---~~-iv~iEd~~E~~l-~~~~ 173 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPED---ER-IVTIEDPPELRL-PGPN 173 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTT---SE-EEEEESSS-S---SCSS
T ss_pred ccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccc---cc-eEEeccccceee-cccc
Confidence 3447888875554444444444332 1235799999999999999999998875330 00 000011111111 2234
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC
Q 000818 545 FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603 (1268)
Q Consensus 545 fIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep 603 (1268)
.+.+... .....+.+++..+.. .+..+|+|.|+-. .++..+ ++.+..+
T Consensus 174 ~~~~~~~--~~~~~~~~~l~~~LR------~~pD~iiigEiR~--~e~~~~-~~a~~tG 221 (270)
T PF00437_consen 174 QIQIQTR--RDEISYEDLLKSALR------QDPDVIIIGEIRD--PEAAEA-IQAANTG 221 (270)
T ss_dssp EEEEEEE--TTTBSHHHHHHHHTT------S--SEEEESCE-S--CHHHHH-HHHHHTT
T ss_pred eEEEEee--cCcccHHHHHHHHhc------CCCCcccccccCC--HhHHHH-HHhhccC
Confidence 4444332 112234455555432 2234999999985 366666 7777765
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.1 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
++|+||||+|||++++.||+.+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999999753
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.022 Score=64.14 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.-++|.||+|+|||++++.+++.+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 4589999999999999999998874
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=57.17 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=54.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-----CcCh------------
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-----KKGL------------ 556 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-----~~gI------------ 556 (1268)
...|+.||||+||||+.|-+|+-+... ..... +..+..+|..+ ..++
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g-~~~~l---------------~kkv~IiDersEIag~~~gvpq~~~g~R~dVl 201 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG-INQFL---------------PKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL 201 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhcc-ccccC---------------CceEEEEeccchhhccccCCchhhhhhhhhhc
Confidence 357999999999999999999987421 10111 22233333211 1111
Q ss_pred ---HHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeC
Q 000818 557 ---DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 557 ---d~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn 614 (1268)
-+-.-++..+..+.|. |+||||+... +...+++..++.+ |.+|.++.
T Consensus 202 d~cpk~~gmmmaIrsm~PE------ViIvDEIGt~--~d~~A~~ta~~~G---Vkli~TaH 251 (308)
T COG3854 202 DPCPKAEGMMMAIRSMSPE------VIIVDEIGTE--EDALAILTALHAG---VKLITTAH 251 (308)
T ss_pred ccchHHHHHHHHHHhcCCc------EEEEeccccH--HHHHHHHHHHhcC---cEEEEeec
Confidence 1112344455544443 9999999864 4456777777764 66666553
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.15 Score=71.69 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcC
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKG 555 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~g 555 (1268)
.+.....+..++.... ...++.|++|||||++++.+...+... +..++-+-++. +.
T Consensus 431 s~~Q~~Av~~il~s~~--~v~ii~G~aGTGKTt~l~~l~~~~~~~---------------------G~~V~~lAPTg-rA 486 (1960)
T TIGR02760 431 SPSNKDAVSTLFTSTK--RFIIINGFGGTGSTEIAQLLLHLASEQ---------------------GYEIQIITAGS-LS 486 (1960)
T ss_pred CHHHHHHHHHHHhCCC--CeEEEEECCCCCHHHHHHHHHHHHHhc---------------------CCeEEEEeCCH-HH
Confidence 3444555555565542 578999999999999999998877321 23444443221 11
Q ss_pred hHH-----------HHHHHHHHHc-----------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEE
Q 000818 556 LDR-----------VRYILKHLSA-----------GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFI 612 (1268)
Q Consensus 556 Id~-----------IReLIEea~~-----------~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILa 612 (1268)
... |..++..+.. ..........||||||+.|++......|++..+.....++||.=
T Consensus 487 A~~L~e~~g~~A~Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD 565 (1960)
T TIGR02760 487 AQELRQKIPRLASTFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLND 565 (1960)
T ss_pred HHHHHHHhcchhhhHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcC
Confidence 111 1111111000 00001246779999999999999999999988766555555553
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.08 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|+||+|+|||+++..++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998776
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.11 Score=56.95 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSA 515 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAk 515 (1268)
..++|+||.|.|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.061 Score=54.73 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLn 518 (1268)
++|+|++|+||||+|+.|++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 79999999999999999999864
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.083 Score=58.18 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=24.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhccc
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVA 521 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~ 521 (1268)
+.++|+|+||+|||++|+-||++|....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 5689999999999999999999996433
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.098 Score=57.07 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..++|+||||+|||+++..||..+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998876
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.24 Score=51.84 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.++|.|++|+|||++++.+|..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998874
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.094 Score=60.59 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=65.4
Q ss_pred CCCCccccC----cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 467 PIFFDELIG----QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 467 P~tFdDLVG----Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
+.++++++- .+.....|..+++.+ ..+||+||+|+||||++++|+..+....+.. . .....+-.++.. .+
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~---~~ilI~G~tGSGKTTll~al~~~i~~~~~~~-r-i~tiEd~~El~~-~~ 178 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLAR---KNILVVGGTGSGKTTLANALLAEIAKNDPTD-R-VVIIEDTRELQC-AA 178 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC---CeEEEECCCCCCHHHHHHHHHHHhhccCCCc-e-EEEECCchhhcC-CC
Confidence 446666652 234556677777644 4689999999999999999998873211100 0 000011111111 12
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep 603 (1268)
.+.+.+..... ...+.+++..+... +..+|||.|+-. .+++. +++.+..+
T Consensus 179 ~~~v~~~~~~~--~~~~~~~l~~aLR~------~pD~iivGEiR~--~ea~~-~l~a~~tG 228 (299)
T TIGR02782 179 PNVVQLRTSDD--AISMTRLLKATLRL------RPDRIIVGEVRG--GEALD-LLKAWNTG 228 (299)
T ss_pred CCEEEEEecCC--CCCHHHHHHHHhcC------CCCEEEEeccCC--HHHHH-HHHHHHcC
Confidence 34444433221 12455566554432 234889999864 45544 46666655
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.027 Score=57.97 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..++|+|++|+|||++|+.||+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999998
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.18 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++|.||+|+||||++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3589999999999999999998885
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.2 Score=58.69 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=117.0
Q ss_pred ccCcHHHHHHHHHHHHc---CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCc-cEE--
Q 000818 473 LIGQNIVVQSLVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR-NFM-- 546 (1268)
Q Consensus 473 LVGQe~vv~tLk~aIks---gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~-dfI-- 546 (1268)
++|++..+..|..++.+ |+ .-.+++.|.+|.|||.+++.+.+-+..+. ..--++.|. .+...... +++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~-~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~---q~~~~ipl~~lvq~ 75 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGR-GEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFD---QFERNIPLSPLVQA 75 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCC-eEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcc---cccCCCchHHHHHH
Confidence 68888888888887764 33 35889999999999999999999885431 111122232 12111100 000
Q ss_pred --E-----EcCCCCc------------C--hHHHHHHHHHHHcCCC----------------------------CCCCCc
Q 000818 547 --E-----VDGTNKK------------G--LDRVRYILKHLSAGLP----------------------------SASPRF 577 (1268)
Q Consensus 547 --E-----IDaSs~~------------g--Id~IReLIEea~~~pp----------------------------~~~g~~ 577 (1268)
. +...... | -..+..++..+..... ....+.
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 0 0000000 0 0000011111110000 012335
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHcCCC-----CcEEEEEEeCCCCCcchhhhcc--eeEEEecCCCHHHHHHHHHHHHHh
Q 000818 578 KVFVIDECHLLPSKTWLAFLKFLEEPP-----QRVVFIFITTDIDNVPRSIQSR--CQKYLFNKIKDGDIVARLRKISAE 650 (1268)
Q Consensus 578 KVIIIDEaD~LS~ea~naLLK~LEepp-----~~vVfILaTn~~eKL~pAL~SR--cq~I~F~pLs~eEI~~iL~kiakk 650 (1268)
-|+|+|++|-..+...+.|-.+|..-+ .+-++++.+..+ .+....++. ...|.+.|++..+....+...+..
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~-~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRP-TLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccc-hhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 599999999988877777777776543 112222222211 233333333 356999999999999999887754
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000818 651 ENLNVEPDALDLIALNADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 651 Egi~Id~dALelLA~~S~GDLRdAinlLEqLsl 683 (1268)
- ..+....++.+.+.+.|++--+.+.+..+..
T Consensus 235 ~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 235 T-KLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred c-ccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 2 4577788999999999998777777766643
|
|
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.13 Score=58.45 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|.|+||+||||+|+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 468999999999999999999987
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.073 Score=56.12 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCc
Q 000818 575 PRFKVFVIDECH-LLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV 619 (1268)
Q Consensus 575 g~~KVIIIDEaD-~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL 619 (1268)
.+.+|+|+||.- .|.......|.+.|.+......+|++|.+.+.+
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 345699999975 466666667767665443356677788776543
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=62.33 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..+.|.||.|+||||++..||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999864
|
|
| >PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.85 Score=55.26 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=60.0
Q ss_pred EEEEeCCCCCC--------HHHHHHHHHHHcCC----CCcEEEEEEeCCCC--------Ccchhhhcce-----------
Q 000818 579 VFVIDECHLLP--------SKTWLAFLKFLEEP----PQRVVFIFITTDID--------NVPRSIQSRC----------- 627 (1268)
Q Consensus 579 VIIIDEaD~LS--------~ea~naLLK~LEep----p~~vVfILaTn~~e--------KL~pAL~SRc----------- 627 (1268)
||+|||+..|- ....+.|+.++++- .+++.||++.+..- .-+++|.+|.
T Consensus 242 lI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~ 321 (416)
T PF10923_consen 242 LILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGFD 321 (416)
T ss_pred EEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccccc
Confidence 89999998762 23478888888652 34677777765321 1266777764
Q ss_pred ----eEEEecCCCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHc
Q 000818 628 ----QKYLFNKIKDGDIVARLRKISAEE------NLNVEPDALDLIALNA 667 (1268)
Q Consensus 628 ----q~I~F~pLs~eEI~~iL~kiakkE------gi~Id~dALelLA~~S 667 (1268)
-+|.+.+++.+++...+.++..-. ...++++.+..+++..
T Consensus 322 n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 322 NLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred CccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 347788999999988877764322 3457788777776654
|
Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.14 Score=52.73 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=55.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcc-cccccccC----CCccEEEEcCCCCcChHHHHHHHHHHHc
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR-ECNDFISG----KSRNFMEVDGTNKKGLDRVRYILKHLSA 568 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~-sC~~i~sG----~s~dfIEIDaSs~~gId~IReLIEea~~ 568 (1268)
..+.|.||.|+|||+++++++..+.... |... .-..+... ....+..+..-+ .|..+--.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~-------G~i~~~~~~~~~~~~~~~~~~i~~~~qlS-~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTS-------GEILIDGKDIAKLPLEELRRRIGYVPQLS-GGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCc-------cEEEECCEEcccCCHHHHHhceEEEeeCC-HHHHHHHHHHHHHhc
Confidence 5799999999999999999987653111 0000 00000000 000111111111 122222223333332
Q ss_pred CCCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHHcCCCC-cEEEEEEeCCCC
Q 000818 569 GLPSASPRFKVFVIDECH-LLPSKTWLAFLKFLEEPPQ-RVVFIFITTDID 617 (1268)
Q Consensus 569 ~pp~~~g~~KVIIIDEaD-~LS~ea~naLLK~LEepp~-~vVfILaTn~~e 617 (1268)
..+++++||.. .|.......|.+.|.+... ...+|+++.+.+
T Consensus 98 -------~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 98 -------NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred -------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 24599999987 4666666677666654322 345677776654
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.094 Score=55.00 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 575 PRFKVFVIDECH-LLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 575 g~~KVIIIDEaD-~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.+.+++++||.- .|.......|.+.|.+. ...+|++|.+.+
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 345699999976 46677778888887765 356777777754
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.081 Score=60.32 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+..++|+||+|+||||++..||..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 36789999999999999999998874
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=65.62 Aligned_cols=227 Identities=19% Similarity=0.188 Sum_probs=126.9
Q ss_pred hhhcCCCCCccccCcHHHHHHHHHH----H-HcCCCCCeEEEEc----CCCchHHHHHHHHHHHhh-cccCCCCCCCCCc
Q 000818 462 SQKYKPIFFDELIGQNIVVQSLVNT----I-SRGRIAPVYLFQG----PRGTGKTSTAKIFSAALN-CVATDQTKPCGYC 531 (1268)
Q Consensus 462 ~eKYRP~tFdDLVGQe~vv~tLk~a----I-ksgRi~~ayLL~G----PpGTGKTSLARaLAkaLn-ce~~e~~~PCg~C 531 (1268)
...-+|..|.++.+++......... + .-..+.-.+..+| +.|++++..++++-.... +.......|+..-
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhh
Confidence 4556788899999987766554444 1 1123334677888 999999999876654421 1111111111110
Q ss_pred ccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCC----------------CCCCCCcEEEEEeCCCCCCHHHHHH
Q 000818 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL----------------PSASPRFKVFVIDECHLLPSKTWLA 595 (1268)
Q Consensus 532 ~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~p----------------p~~~g~~KVIIIDEaD~LS~ea~na 595 (1268)
.. .......|+.=.... ...|+-.+...+ ....++..|+||||+..|....+..
T Consensus 175 ~~----~~~~~~p~v~a~~~~------~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~ 244 (647)
T COG1067 175 EL----SPLDGAPVVFATGAI------ADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWK 244 (647)
T ss_pred hh----ccccCCcEEecCCCC------hhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHH
Confidence 00 000111222111111 112222222111 0124677799999999999777777
Q ss_pred HHHHHcCC---------------------CCcEEEEEEeCCCC--CcchhhhcceeE----EEecCC---CHHHHHHHHH
Q 000818 596 FLKFLEEP---------------------PQRVVFIFITTDID--NVPRSIQSRCQK----YLFNKI---KDGDIVARLR 645 (1268)
Q Consensus 596 LLK~LEep---------------------p~~vVfILaTn~~e--KL~pAL~SRcq~----I~F~pL---s~eEI~~iL~ 645 (1268)
+||.|.+. |..+.+|++.+... .+.+...+|..- ..|... .++...+.++
T Consensus 245 ~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~ 324 (647)
T COG1067 245 LLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQ 324 (647)
T ss_pred HHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHH
Confidence 77766432 46777888877543 455555555422 455432 3444444443
Q ss_pred HH----HHh-cCCCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHh-----CCccCHHHHHHHhc
Q 000818 646 KI----SAE-ENLNVEPDALDLIALNA----------DGSLRDAETMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 646 ki----akk-Egi~Id~dALelLA~~S----------~GDLRdAinlLEqLsll-----gk~IT~edV~eLVG 698 (1268)
.+ ++. .-..++.+|+..|+..+ .-.+|++.++|.-+... ...||.++|++++.
T Consensus 325 ~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~ 397 (647)
T COG1067 325 FYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQ 397 (647)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHH
Confidence 33 334 34468999998887755 22688888888866443 23699999887764
|
|
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.15 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
..++|.||||+|||++++.|++.++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~ 27 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSI 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999998853
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.45 Score=47.58 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaL 517 (1268)
++|.|++|+|||++|+.||+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.57 Score=56.91 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+..++|.|++|+||||++..||..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 35789999999999999999998873
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.37 Score=49.50 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=55.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~ 573 (1268)
..+.|.||.|+||||++++++..+... .+ .+ .+ .+ ...+..+..-+ .|..+--.+...+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~---~G----~i----~~-~~-~~~i~~~~~lS-~G~~~rv~laral~------ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPD---EG----IV----TW-GS-TVKIGYFEQLS-GGEKMRLALAKLLL------ 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCC---ce----EE----EE-CC-eEEEEEEccCC-HHHHHHHHHHHHHh------
Confidence 568999999999999999997765211 10 00 00 01 01111221111 11111122233332
Q ss_pred CCCcEEEEEeCCC-CCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 574 SPRFKVFVIDECH-LLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 574 ~g~~KVIIIDEaD-~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.+.+++|+||.- .|.......|.+++.+. ...+|++|.+.+
T Consensus 87 -~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 87 -ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred -cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 234599999976 56677777777777665 245667776654
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.08 Score=54.70 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaL 517 (1268)
++|.||+|+||||+++.|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999997
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.094 Score=55.05 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCc
Q 000818 576 RFKVFVIDECH-LLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV 619 (1268)
Q Consensus 576 ~~KVIIIDEaD-~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL 619 (1268)
+.+++|+||.- .|.......|.++|.+......+|++|.+.+.+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 44699999965 466666677777766543346677777766543
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=63.16 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++|+|+||+|||+++..|+..+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998763
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.035 Score=59.07 Aligned_cols=35 Identities=37% Similarity=0.547 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 480 VQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 480 v~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.+.+..++.... ..++.||||||||+++..++..+
T Consensus 7 ~~Ai~~~~~~~~---~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG---ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE----EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CEEEECCCCCChHHHHHHHHHHh
Confidence 344444443332 58999999999998877777666
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.18 Score=55.12 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~ 573 (1268)
..+.|+||+|+|||+++..++........ ..|....++.|+.........+.++.+.+...+.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~---------------~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~-- 82 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIE---------------LGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPE-- 82 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccc---------------cCCCCccEEEEeCCCCcCHHHHHHHHHHhccChH--
Confidence 57899999999999999999865311000 0012346777776654345666666655432211
Q ss_pred CCCcEEEEEeC
Q 000818 574 SPRFKVFVIDE 584 (1268)
Q Consensus 574 ~g~~KVIIIDE 584 (1268)
.--.+|++++.
T Consensus 83 ~~~~~i~~~~~ 93 (235)
T cd01123 83 EVLDNIYVARA 93 (235)
T ss_pred hHhcCEEEEec
Confidence 11233666654
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.13 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|+||.|+|||++.+.++..+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 468999999999999999999443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.13 Score=55.32 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=68.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCC--------CCCCCCcccc-----cccccCCCccEEEEcCCCCcChHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQ--------TKPCGYCREC-----NDFISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~--------~~PCg~C~sC-----~~i~sG~s~dfIEIDaSs~~gId~IR 560 (1268)
..+.+|+++|.|||++|-.+|-........- ....++-... .-+..+.+..+.. .........++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~--~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWET--QNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecC--CCcHHHHHHHH
Confidence 4578888899999999999987764332110 0011110000 0000111111111 00000112234
Q ss_pred HHHHHHHcCCCCCCCCcEEEEEeCCCCCCHH---HHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhccee
Q 000818 561 YILKHLSAGLPSASPRFKVFVIDECHLLPSK---TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628 (1268)
Q Consensus 561 eLIEea~~~pp~~~g~~KVIIIDEaD~LS~e---a~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SRcq 628 (1268)
+.++.+.... ..+.+.+||+||+-....- ..+.++.+|+..|..+-+|+|..+. ++.|...+.
T Consensus 84 ~~~~~a~~~l--~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 84 AAWQHAKEML--ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred HHHHHHHHHH--hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4444444322 3578899999998632110 1346788888888999999998765 455555553
|
Alternate name: corrinoid adenosyltransferase. |
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.044 Score=65.63 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCCCCHHH-----------------------HHHHHHHHc-CCCCcEEEEEEeCCCCCcchhhhcceeE-E
Q 000818 576 RFKVFVIDECHLLPSKT-----------------------WLAFLKFLE-EPPQRVVFIFITTDIDNVPRSIQSRCQK-Y 630 (1268)
Q Consensus 576 ~~KVIIIDEaD~LS~ea-----------------------~naLLK~LE-epp~~vVfILaTn~~eKL~pAL~SRcq~-I 630 (1268)
..-+||||||+.+-+.. -..++..+. ...-+.=|||+|.++..|...|+..+.. +
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lvE~~~ 160 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMIEMTY 160 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhhhheE
Confidence 44599999999874321 112334433 3334567888888888888888877754 4
Q ss_pred EecCC
Q 000818 631 LFNKI 635 (1268)
Q Consensus 631 ~F~pL 635 (1268)
.+...
T Consensus 161 ~h~k~ 165 (399)
T PHA00350 161 YHKKN 165 (399)
T ss_pred EEEee
Confidence 44443
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.14 Score=61.26 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccc---------ccCCCccEEEEcCCCCcChHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF---------ISGKSRNFMEVDGTNKKGLDRVRYIL 563 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i---------~sG~s~dfIEIDaSs~~gId~IReLI 563 (1268)
+..++|.||.|+||||++..||..+..... ..+..+..+... ....+.+++.. . ..+.+...+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~---~V~lItaDtyR~gAveQLk~yae~lgvpv~~~--~---dp~dL~~al 277 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR---TVGFITTDTFRSGAVEQFQGYADKLDVELIVA--T---SPAELEEAV 277 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCccCccHHHHHHHHhhcCCCCEEec--C---CHHHHHHHH
Confidence 457899999999999999999987632211 111111111111 01112222211 1 134455555
Q ss_pred HHHHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcC
Q 000818 564 KHLSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEE 602 (1268)
Q Consensus 564 Eea~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEe 602 (1268)
+.+.. ...+.+||||=+.... .+....|.++++.
T Consensus 278 ~~l~~-----~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 278 QYMTY-----VNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred HHHHh-----cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 55542 1346789999888764 3345556665554
|
|
| >PRK04220 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.15 Score=59.09 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.4
Q ss_pred HHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 484 VNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 484 k~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
...+...+.+-.++|.|++|+|||++|..||..++.
T Consensus 83 ~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 83 WRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344555555668999999999999999999999954
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.3 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+++.|++|+||||+|+.|++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998873
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.75 Score=59.84 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|+||.+.|||++.+.++-..
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~ 351 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAA 351 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH
Confidence 468999999999999999997553
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.12 Score=58.22 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++++||||+|||+++..||...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999987764
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.17 Score=65.71 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHH
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaL 513 (1268)
......|..+|... +.++|.||+|+||||-+-.+
T Consensus 52 ~~~~~~i~~ai~~~---~vvii~getGsGKTTqlP~~ 85 (845)
T COG1643 52 TAVRDEILKAIEQN---QVVIIVGETGSGKTTQLPQF 85 (845)
T ss_pred HHHHHHHHHHHHhC---CEEEEeCCCCCChHHHHHHH
Confidence 45667788888776 46999999999999965444
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.62 Score=50.26 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..++|.||+|+|||++++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999998764
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.23 Score=67.08 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHH
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAka 516 (1268)
......|..+|..+. +++++|++|+||||.+=.+.-.
T Consensus 69 ~~~~~~Il~~l~~~~---vvii~g~TGSGKTTqlPq~lle 105 (1283)
T TIGR01967 69 SAKREDIAEAIAENQ---VVIIAGETGSGKTTQLPKICLE 105 (1283)
T ss_pred HHHHHHHHHHHHhCc---eEEEeCCCCCCcHHHHHHHHHH
Confidence 445577888887654 6899999999999977555443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.15 Score=58.24 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=59.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccc--------ccccCCCccEEEEcCCCCcChHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN--------DFISGKSRNFMEVDGTNKKGLDRVRYILKH 565 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~--------~i~sG~s~dfIEIDaSs~~gId~IReLIEe 565 (1268)
..++|+||+|+|||++++.++..+......... -.|...+ .+....+.+++.. . ..+.+...++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~--i~~D~~ri~~~~ql~~~~~~~~~~~~~~--~---~~~~l~~~l~~ 148 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF--ITTDHSRIGTVQQLQDYVKTIGFEVIAV--R---DEAAMTRALTY 148 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--EecCCCCHHHHHHHHHHhhhcCceEEec--C---CHHHHHHHHHH
Confidence 689999999999999999999887421110000 0011110 1111112222211 1 13445555555
Q ss_pred HHcCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHcCC-CCcEEEEEEeC
Q 000818 566 LSAGLPSASPRFKVFVIDECHLLP--SKTWLAFLKFLEEP-PQRVVFIFITT 614 (1268)
Q Consensus 566 a~~~pp~~~g~~KVIIIDEaD~LS--~ea~naLLK~LEep-p~~vVfILaTn 614 (1268)
+.. ..++.+||||-+.... ......|.++++.. |..++||+.++
T Consensus 149 l~~-----~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~ 195 (270)
T PRK06731 149 FKE-----EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 195 (270)
T ss_pred HHh-----cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCc
Confidence 432 1356799999998874 44566677766532 34566677544
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.17 Score=56.87 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..+|+.|+||+|||+++..|+...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.25 Score=60.85 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=42.1
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 465 YRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..+..|+++--.+..++.|...+...+ ..+||+||.|+||||+..++...++
T Consensus 216 ~~~~~l~~Lg~~~~~~~~l~~~~~~~~--GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 216 AVRLDLETLGMSPELLSRFERLIRRPH--GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred cCCCCHHHcCCCHHHHHHHHHHHhcCC--CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 346688888777888888888876543 4789999999999999998877775
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.25 Score=63.54 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.+|+|.||.|+||||++..||..+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 579999999999999999999876
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.24 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|+||.|+||||+.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 568999999999999999998654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.37 Score=55.82 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 480 VQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 480 v~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..-|...+..+ ..++|.||.|+||||++++++..+
T Consensus 134 ~~~l~~~v~~~---~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 134 KEFLRLAIASR---KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHHHHhhCC---CEEEEECCCCCCHHHHHHHHHccC
Confidence 34444455544 479999999999999999998776
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.52 Score=57.25 Aligned_cols=122 Identities=16% Similarity=0.292 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccc---------------cCC--Ccc
Q 000818 482 SLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI---------------SGK--SRN 544 (1268)
Q Consensus 482 tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~---------------sG~--s~d 544 (1268)
.+.+.+..+. .++|.|+.|+|||+-+=.++-... .....+..|.. -+... .|. +..
T Consensus 54 ~F~~~l~~nQ---~~v~vGetgsGKttQiPq~~~~~~-~~~~~~v~CTQ---prrvaamsva~RVadEMDv~lG~EVGys 126 (699)
T KOG0925|consen 54 EFLKLLLNNQ---IIVLVGETGSGKTTQIPQFVLEYE-LSHLTGVACTQ---PRRVAAMSVAQRVADEMDVTLGEEVGYS 126 (699)
T ss_pred HHHHHHhcCc---eEEEEecCCCCccccCcHHHHHHH-HhhccceeecC---chHHHHHHHHHHHHHHhccccchhcccc
Confidence 4445555554 599999999999986655544431 11112222211 11110 010 111
Q ss_pred EEEEcCCCCcChHH-H--HHHHHHHHcCCCCCCCCcEEEEEeCCCCC--CHHHHHHHHHHH-cCCCCcEEEEEEe
Q 000818 545 FMEVDGTNKKGLDR-V--RYILKHLSAGLPSASPRFKVFVIDECHLL--PSKTWLAFLKFL-EEPPQRVVFIFIT 613 (1268)
Q Consensus 545 fIEIDaSs~~gId~-I--ReLIEea~~~pp~~~g~~KVIIIDEaD~L--S~ea~naLLK~L-Eepp~~vVfILaT 613 (1268)
+-.-|+...+.+=. + +.|+.++...+ +.++|+|||+||+|.= ..+..-.|||-+ -+.| ...+|+.+
T Consensus 127 IrfEdC~~~~T~Lky~tDgmLlrEams~p--~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmS 198 (699)
T KOG0925|consen 127 IRFEDCTSPNTLLKYCTDGMLLREAMSDP--LLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMS 198 (699)
T ss_pred ccccccCChhHHHHHhcchHHHHHHhhCc--ccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEee
Confidence 11123333221111 1 34566665544 6899999999999963 344455555533 3333 44444443
|
|
| >COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.12 Score=60.04 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=81.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCC-CcChH--HHHHHHHHHHcC
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-KKGLD--RVRYILKHLSAG 569 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs-~~gId--~IReLIEea~~~ 569 (1268)
..+++|+||.++|||.+|-.||+.+++ .+|.+|... .++++ .-+--.++....
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~------------------------eIIs~DSmQvYr~mdIGTAKps~~e~~~v 58 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGG------------------------EIISLDSMQVYRGLDIGTAKPSLEELAGV 58 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCC------------------------cEEecchhhhcCCCcccCCCCCHHHHcCC
Confidence 467999999999999999999999954 333333211 11111 001112333222
Q ss_pred CCCCCCCcEEEEEeCCCC---CCHHH-HHHHHHHHcCCCC-cEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHH
Q 000818 570 LPSASPRFKVFVIDECHL---LPSKT-WLAFLKFLEEPPQ-RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644 (1268)
Q Consensus 570 pp~~~g~~KVIIIDEaD~---LS~ea-~naLLK~LEepp~-~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL 644 (1268)
+ =.+||.++- ++... ....++.+++... +-+.|++....- ...+|..- +..-|..+.++...+
T Consensus 59 p--------HhliDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTgl-Y~~aL~~g---~~~~p~~~~~~r~~~ 126 (308)
T COG0324 59 P--------HHLIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGL-YLKALLEG---LSLLPEADPEVRRRL 126 (308)
T ss_pred C--------EEEecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHH-HHHHHHcC---CCCCCCCCHHHHHHH
Confidence 2 356666553 33222 2233333333211 112333322111 12222221 222334344555555
Q ss_pred HHHHHhcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccCH
Q 000818 645 RKISAEENL--------NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITS 690 (1268)
Q Consensus 645 ~kiakkEgi--------~Id~dALelLA~~S~GDLRdAinlLEqLsllgk~IT~ 690 (1268)
...+...|. .+++.+. ++...+|.+.+...||-..+.|++++.
T Consensus 127 ~~~~~~~g~~~L~~~L~~~Dp~~a---~~i~pnD~~Ri~RALEv~~~tGk~~s~ 177 (308)
T COG0324 127 EAELAELGNDALHAELKKIDPEAA---AKIHPNDPQRIIRALEVYYLTGKPISE 177 (308)
T ss_pred HHHHHhcCHHHHHHHHHhhCHHHH---HhcCCCchhHHHHHHHHHHHHCCCHHH
Confidence 555555443 2344433 445579999999999988888877654
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.72 Score=59.93 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAka 516 (1268)
..++|+||.|.|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57899999999999999999877
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.047 Score=63.97 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcC
Q 000818 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG 569 (1268)
Q Consensus 490 gRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~ 569 (1268)
..++..+.|||+-|.|||.+.-.|-..+-.+. ..-+.+ +.|....+..+.++-+.. +-+..+.+++
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~---k~R~HF----h~FM~~vH~~l~~l~g~~----dpl~~iA~~~--- 127 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGER---KRRLHF----HRFMARVHQRLHTLQGQT----DPLPPIADEL--- 127 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccc---cccccH----HHHHHHHHHHHHHHcCCC----CccHHHHHHH---
Confidence 34567899999999999999999988872211 011111 122221122222222221 2233333333
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHH---HHHHHHHHcCCCCcEEEEEEeCCCC-C----------c---chhhhcceeEEEe
Q 000818 570 LPSASPRFKVFVIDECHLLPSKT---WLAFLKFLEEPPQRVVFIFITTDID-N----------V---PRSIQSRCQKYLF 632 (1268)
Q Consensus 570 pp~~~g~~KVIIIDEaD~LS~ea---~naLLK~LEepp~~vVfILaTn~~e-K----------L---~pAL~SRcq~I~F 632 (1268)
.++.+|+.|||++--.... ...|+..|=. ..|++|.++|... . + +..|.++|.++.+
T Consensus 128 ----~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~--~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~v 201 (367)
T COG1485 128 ----AAETRVLCFDEFEVTDIADAMILGRLLEALFA--RGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNV 201 (367)
T ss_pred ----HhcCCEEEeeeeeecChHHHHHHHHHHHHHHH--CCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEe
Confidence 2457799999987543222 2333333322 2577777777653 2 2 3356788887666
Q ss_pred cCC
Q 000818 633 NKI 635 (1268)
Q Consensus 633 ~pL 635 (1268)
.-.
T Consensus 202 D~~ 204 (367)
T COG1485 202 DGP 204 (367)
T ss_pred cCC
Confidence 544
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.51 Score=58.28 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=86.4
Q ss_pred cEEEEEeCCCCCCH--HHHHHHHHH---HcCCCCcEEEEEEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhc
Q 000818 577 FKVFVIDECHLLPS--KTWLAFLKF---LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651 (1268)
Q Consensus 577 ~KVIIIDEaD~LS~--ea~naLLK~---LEepp~~vVfILaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkE 651 (1268)
..|+|+.++|.+.. .....|..+ +... ..+ +|+.+. .-.+|..|..-+.+++|+.|+.+++..+|..++...
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~-~~~-~i~~~~-~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~ 158 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQ-PKT-IIIIAS-ELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSL 158 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhC-CCE-EEEEcC-CCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhc
Confidence 45999999998843 233333332 2332 233 444443 345889999999999999999999999999988878
Q ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCccCHHHHHHHh
Q 000818 652 NLNVEPDALDLIALNADG-SLRDAETMLDQLSLLGKRITSSLVNELV 697 (1268)
Q Consensus 652 gi~Id~dALelLA~~S~G-DLRdAinlLEqLsllgk~IT~edV~eLV 697 (1268)
++.++++.++.|+..+.| +.-++.+.+.++....+.|+.+++..++
T Consensus 159 ~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (489)
T CHL00195 159 NIKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPLIL 205 (489)
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHHHH
Confidence 899999999999998766 5777778887766666678887765443
|
|
| >PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.15 Score=60.66 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEE-cCCCCcChHHH
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEV-DGTNKKGLDRV 559 (1268)
Q Consensus 481 ~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEI-DaSs~~gId~I 559 (1268)
..|+.+++.---...++|||||.|||+.++-.|.+-|. ..|+.+ |..+.
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~------------------------GkViSf~Ns~Sh------ 299 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK------------------------GKVISFVNSKSH------ 299 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT------------------------SEEE-GGGTTSC------
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC------------------------CEEEEecCCCCc------
Confidence 45666666433347899999999999999999998883 233332 32221
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHH----HHHHHcCCC--------Cc-----EEEEEEeCCC---CCc
Q 000818 560 RYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLA----FLKFLEEPP--------QR-----VVFIFITTDI---DNV 619 (1268)
Q Consensus 560 ReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~na----LLK~LEepp--------~~-----vVfILaTn~~---eKL 619 (1268)
+-..| ....||.+||++ +...|+- |+..|+..| .. -.+|++||.. +.-
T Consensus 300 ------FWLqP---L~d~Ki~llDDA---T~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~ 367 (432)
T PF00519_consen 300 ------FWLQP---LADAKIALLDDA---TYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDR 367 (432)
T ss_dssp ------GGGGG---GCT-SSEEEEEE----HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCC
T ss_pred ------ccccc---hhcCcEEEEcCC---cccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchh
Confidence 11111 356778999987 4556654 344555331 00 1135555543 234
Q ss_pred chhhhcceeEEEecCC-------------CHHHHHHHHHHHHHhcC
Q 000818 620 PRSIQSRCQKYLFNKI-------------KDGDIVARLRKISAEEN 652 (1268)
Q Consensus 620 ~pAL~SRcq~I~F~pL-------------s~eEI~~iL~kiakkEg 652 (1268)
..-|.||...|.|+.+ ++.....+.++......
T Consensus 368 ~~YLhSRi~~f~F~n~~P~d~~G~P~y~ltd~~WksFF~rlw~~Ld 413 (432)
T PF00519_consen 368 WKYLHSRITCFEFPNPFPLDENGNPVYELTDANWKSFFRRLWSQLD 413 (432)
T ss_dssp CHHHCTTEEEEE--S-S-BSTTSSBSS---HHHHHHHHHHHTCCCT
T ss_pred hhhhhheEEEEEcCCccccCCCCCeeEEeccChHHHHHHHHHHhcC
Confidence 6789999999999743 33445555555554433
|
The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.22 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..++|.||+|+|||++++.|++.+
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999999876
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.37 Score=53.95 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=56.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC--cC-------hHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK--KG-------LDRVRYILK 564 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~--~g-------Id~IReLIE 564 (1268)
..+||+||...|||++.|.++....-....-..||..+ .+.. ...-+..+...+. .+ +.++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~----~i~~-~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~ 118 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESA----EIPI-FDRIFTRIGDDDSIESGLSTFMAEMKRLSSILR 118 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEE----EEE---SEEEEEES---SSTTSSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccc----cccc-ccEEEeecccccccccccccHHHhHHHHHhhhh
Confidence 57999999999999999999877643232233343221 1100 0111223332221 11 223444444
Q ss_pred HHHcCCCCCCCCcEEEEEeCCCCCCHH-----HHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 565 HLSAGLPSASPRFKVFVIDECHLLPSK-----TWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 565 ea~~~pp~~~g~~KVIIIDEaD~LS~e-----a~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.+ ..+.+|+|||+..=+.. ...+++++|.+. .++.+|++|...+
T Consensus 119 ~~--------~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~-~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 119 NA--------TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK-SGCFVIIATHFHE 167 (235)
T ss_dssp H----------TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT-TT-EEEEEES-GG
T ss_pred hc--------ccceeeecccccCCCChhHHHHHHHHHHHHHHHh-ccccEEEEeccch
Confidence 43 24569999999876532 244566666542 1455566665553
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.3 Score=65.91 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHH
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAka 516 (1268)
......|..+|..++ +++++|++|+||||.+=.+..+
T Consensus 76 ~~~r~~Il~ai~~~~---VviI~GeTGSGKTTqlPq~lle 112 (1294)
T PRK11131 76 SQKKQDILEAIRDHQ---VVIVAGETGSGKTTQLPKICLE 112 (1294)
T ss_pred HHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHH
Confidence 455577888887664 6899999999999965544433
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.29 Score=47.63 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=54.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcC---hH----HHHHHHHHHHc
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKG---LD----RVRYILKHLSA 568 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~g---Id----~IReLIEea~~ 568 (1268)
++|.|++|+||||+...|...-.... ....+|..-.....+ .-....+..+|-..... .. .+...++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~-~~~~~~T~~~~~~~~-~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~- 78 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKV-SNIPGTTRDPVYGQF-EYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS- 78 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEE-SSSTTSSSSEEEEEE-EETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhccccccc-cccccceeeeeeeee-eeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH-
Confidence 58999999999999999985311111 111122111111111 11234555666544211 11 2333444442
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEE
Q 000818 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611 (1268)
Q Consensus 569 ~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfIL 611 (1268)
....-|+++| ++....+....+++.|+ ....+++|+
T Consensus 79 -----~~d~ii~vv~-~~~~~~~~~~~~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 79 -----KSDLIIYVVD-ASNPITEDDKNILRELK-NKKPIILVL 114 (116)
T ss_dssp -----TESEEEEEEE-TTSHSHHHHHHHHHHHH-TTSEEEEEE
T ss_pred -----HCCEEEEEEE-CCCCCCHHHHHHHHHHh-cCCCEEEEE
Confidence 2345577788 77644556677777776 434555544
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.1 Score=60.59 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
..+++.||+|+|||++|..||+.+++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 57899999999999999999999853
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.35 Score=52.50 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=37.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~ 567 (1268)
..+.|+||+|+|||+++..+|........ ..|....++.|+.........+..+.+...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~---------------~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~ 78 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGE---------------LGGLEGKVVYIDTEGAFRPERLVQLAVRFG 78 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccc---------------cCCCcceEEEEecCCCCCHHHHHHHHHHhc
Confidence 57999999999999999999877521100 011234567777655333456666665543
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.05 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=22.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.++|.|+||+||||+++.||+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999983
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.23 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=21.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
...+++||.|.|||++.++++-.+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999866553
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.16 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++++|++|+|||+++..|+...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999997654
|
|
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.35 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+++|+|++|+|||++|+.|+..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999984
|
The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.18 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAka 516 (1268)
+..+|++||||+|||+++..|+..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999988765
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.41 Score=62.42 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHH
Q 000818 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513 (1268)
Q Consensus 478 ~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaL 513 (1268)
.+...|..+|..++ .+++.|++|+|||+.+-..
T Consensus 5 ~~~~~i~~~l~~~~---~vIi~a~TGSGKTT~vpl~ 37 (819)
T TIGR01970 5 AVLPALRDALAAHP---QVVLEAPPGAGKSTAVPLA 37 (819)
T ss_pred HHHHHHHHHHHcCC---cEEEECCCCCCHHHHHHHH
Confidence 45567778887654 6899999999999976543
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.046 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaL 517 (1268)
++|.|++|+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999996
|
... |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.39 Score=58.76 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=63.4
Q ss_pred CCCeEE-EEcCCCchHHHHHHHHHHHhhcccCCCC-CCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcC
Q 000818 492 IAPVYL-FQGPRGTGKTSTAKIFSAALNCVATDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG 569 (1268)
Q Consensus 492 i~~ayL-L~GPpGTGKTSLARaLAkaLnce~~e~~-~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~ 569 (1268)
++|.++ +.|||||||||+++.|.+.+......+. -| ..+.+|....+..+.+. +++..+++-+..+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-------iTvvsgK~RRiTflEcp-----~Dl~~miDvaKIa 134 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-------ITVVSGKTRRITFLECP-----SDLHQMIDVAKIA 134 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-------eEEeecceeEEEEEeCh-----HHHHHHHhHHHhh
Confidence 345544 8999999999999999888743222111 11 23445666666666655 3455555554432
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhh
Q 000818 570 LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSI 623 (1268)
Q Consensus 570 pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL 623 (1268)
.--+++||-.-.+--+....|.-+...+.+++.-|++--+.-+-+.+|
T Consensus 135 ------DLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stL 182 (1077)
T COG5192 135 ------DLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTL 182 (1077)
T ss_pred ------heeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHH
Confidence 233677887666655665544444444445554444433333333333
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.037 Score=66.05 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
-.+|.||+|+|||++++.+++.+..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3688999999999999999998854
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.31 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.+|+.|++|+|||++|..++..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 579999999999999999998863
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.44 Score=58.43 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=47.4
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
+-..+....|+++.........+.+++.... ..+|++||.|+||||+...+.+.++.
T Consensus 228 l~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~--GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 228 LDKDQVILDLEKLGMSPFQLARLLRLLNRPQ--GLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred eccccccCCHHHhCCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 3344457788999888888889998887654 68999999999999999999999864
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.25 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=20.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..+|++||||+|||+++..|+.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999998876553
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.24 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAka 516 (1268)
..+++.||+|+|||.++...+-.
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHHh
Confidence 45899999999999998865543
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.64 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 000818 496 YLFQGPRGTGKTSTAKIFSA 515 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAk 515 (1268)
+++.|++|+|||+++..+..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999988853
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.13 Score=72.37 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEE
Q 000818 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611 (1268)
Q Consensus 574 ~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfIL 611 (1268)
.....||||||+-|+....+..|++..+.....++||.
T Consensus 1110 ~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak~vlvG 1147 (1960)
T TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLG 1147 (1960)
T ss_pred CCcccEEEEEccccccHHHHHHHHHhccCCCCEEEEeC
Confidence 34567999999999999999999998887644444443
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.42 Score=59.96 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=74.2
Q ss_pred CCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCC---CCCCCCCcccccccccCCCc
Q 000818 467 PIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD---QTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 467 P~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e---~~~PCg~C~sC~~i~sG~s~ 543 (1268)
+..|+++--.+..++.|.+++...+ ..+||+||.|+||||+..++.+.++..... -..|- -..+ .+.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~~~--Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpv-----E~~~---~~~ 361 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHKPQ--GMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPV-----EINL---PGI 361 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCc-----eecC---CCc
Confidence 4578888777888888888876543 578999999999999999888888532100 00110 0000 012
Q ss_pred cEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEEEEeCCCCCc
Q 000818 544 NFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV 619 (1268)
Q Consensus 544 dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfILaTn~~eKL 619 (1268)
.-++++... +. .+...+..+-. ....||+|.|+- ..+.....++....+ + +|++|-+....
T Consensus 362 ~q~~v~~~~--g~-~~~~~l~~~LR------~dPDvI~vGEiR--d~eta~~a~~aa~tG--H--lv~tTlHa~~a 422 (564)
T TIGR02538 362 NQVNVNPKI--GL-TFAAALRSFLR------QDPDIIMVGEIR--DLETAEIAIKAAQTG--H--LVLSTLHTNDA 422 (564)
T ss_pred eEEEecccc--CC-CHHHHHHHHhc------cCCCEEEeCCCC--CHHHHHHHHHHHHcC--C--cEEEEeccCCH
Confidence 233443321 11 23344444332 234599999987 445555556655544 3 46666555443
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=93.76 E-value=2 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
..+|++||+|+||||+++++++.++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998853
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.5 Score=55.68 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=22.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
+||+||||+|||++++.|++.++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999853
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.1 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAka 516 (1268)
+.++|.|++|+|||++...+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 68899999999999999998765
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.096 Score=56.23 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..+.|.||.|+|||++.++++..+
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 569999999999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.36 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
++++||||+||||+++.||+.++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 799999999999999999999854
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.52 Score=61.49 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHH
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512 (1268)
Q Consensus 477 e~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARa 512 (1268)
..+...|.++|..++ .+++.||+|+|||+..=.
T Consensus 7 ~~~~~~i~~~l~~~~---~vvv~A~TGSGKTt~~pl 39 (812)
T PRK11664 7 AAVLPELLTALKTAP---QVLLKAPTGAGKSTWLPL 39 (812)
T ss_pred HHHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHH
Confidence 345677888887664 589999999999998754
|
|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.074 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLn 518 (1268)
++|+|++|+|||++|+.||+.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999983
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.14 Score=61.54 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+...+|.||+|+|||++++.+++.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35689999999999999999999874
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR02653 Lon_rel_chp conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.53 Score=59.42 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred hhcCCCCCccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCC
Q 000818 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 463 eKYRP~tFdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s 542 (1268)
--|.|..|++- -.-..+..|.-.++.+ -+++=.||+|||||++=+-+ +
T Consensus 190 iG~eP~~~~~r-~K~~~L~RliPlVE~N---~Nl~ELgPrgTGKS~~y~ei----------------------------S 237 (675)
T TIGR02653 190 VGMEPTNLERR-TKWHLLTRLIPLVENN---YNLCELGPRGTGKSHVYKEC----------------------------S 237 (675)
T ss_pred cCCCccccCHH-HHHHHHHhhhhhcccc---cceEEECCCCCCcceeeecc----------------------------C
Confidence 35889888651 0111122222233322 25677799999999976644 3
Q ss_pred ccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCC---HHHHHHHHHHHcCC---------CCcEEEE
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---SKTWLAFLKFLEEP---------PQRVVFI 610 (1268)
Q Consensus 543 ~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS---~ea~naLLK~LEep---------p~~vVfI 610 (1268)
+..+-+.+...+ ...|+=+......-.-+.+.+|.+||+..+. ++..+.|..||+.. ....-+|
T Consensus 238 p~~~liSGG~~T----~A~LFyn~~~~~~GlVg~~D~VaFDEva~i~f~d~d~v~imK~YM~sG~FsRG~~~~~a~as~v 313 (675)
T TIGR02653 238 PNSILMSGGQTT----VANLFYNMSTRQIGLVGMWDVVAFDEVAGIEFKDKDGVQIMKDYMASGSFARGKESIEGKASIV 313 (675)
T ss_pred CceEEEECCccc----hhHeeEEcCCCceeEEeeccEEEEeeccccccCCHHHHHHHHHHhhcCcccccccccccceeEE
Confidence 333444433211 1122222221111124667799999999864 55677777788753 2456677
Q ss_pred EEeCCCC
Q 000818 611 FITTDID 617 (1268)
Q Consensus 611 LaTn~~e 617 (1268)
|..|-..
T Consensus 314 fvGNi~~ 320 (675)
T TIGR02653 314 FVGNINQ 320 (675)
T ss_pred EEcccCC
Confidence 7766554
|
This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]. |
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.074 Score=55.21 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.++|.|++|+|||++++.||+.|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999999983
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.077 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.++|.|.||+|||++++.||+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.21 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..+.|.||.|+|||++.++++..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999999876
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.62 Score=54.52 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=34.9
Q ss_pred CCCCcccc--C--cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 467 PIFFDELI--G--QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 467 P~tFdDLV--G--Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+.++++++ | .+.....|..++..+ ..++|.|++|+||||++++|+..+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~---~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVRAH---RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC---CeEEEECCCCCCHHHHHHHHHHhh
Confidence 44566665 2 134455666666654 468999999999999999999875
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.42 Score=51.58 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.6
Q ss_pred CeEEEEcCCCchHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFS 514 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLA 514 (1268)
..++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 369999999999999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.44 E-value=1 Score=59.47 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=102.9
Q ss_pred cCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEE---EEcC
Q 000818 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM---EVDG 550 (1268)
Q Consensus 474 VGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfI---EIDa 550 (1268)
||++..++.+.+.+..... ..+=+||.-|+||||+|+.+-+.... .+.+++.+ .+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~-------------------v~~~Fd~~iWV~VSk 220 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDE-------------------VGNHFDGVIWVVVSK 220 (889)
T ss_pred ccHHHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccch-------------------hcccCceEEEEEEcc
Confidence 9999999999999887665 78999999999999999998666521 01112211 1111
Q ss_pred CCCcChHHH-HHHHH-------------------HHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCCCCcEEEE
Q 000818 551 TNKKGLDRV-RYILK-------------------HLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610 (1268)
Q Consensus 551 Ss~~gId~I-ReLIE-------------------ea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEepp~~vVfI 610 (1268)
+ ..+..| .++++ .+... ....+-+||+|++= .+..+..+-..+........++
T Consensus 221 -~-f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~---L~~krfllvLDDIW--~~~dw~~I~~~~p~~~~g~Kvv 293 (889)
T KOG4658|consen 221 -E-FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL---LEGKRFLLVLDDIW--EEVDWDKIGVPFPSRENGSKVV 293 (889)
T ss_pred -c-ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH---hccCceEEEEeccc--ccccHHhcCCCCCCccCCeEEE
Confidence 0 000000 11111 11111 13455588899863 2333444333332222336677
Q ss_pred EEeCCCCCcchhhhcceeEEEecCCCHHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Q 000818 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN--V-EPDALDLIALNADGSLRDAETMLDQLSLLG 685 (1268)
Q Consensus 611 LaTn~~eKL~pAL~SRcq~I~F~pLs~eEI~~iL~kiakkEgi~--I-d~dALelLA~~S~GDLRdAinlLEqLsllg 685 (1268)
|||.... +-.....++..+...-+..++.-..+.+++-..... . =++....+++.++| +--|++.|-.+....
T Consensus 294 lTTRs~~-V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~G-LPLAl~viG~~ma~K 369 (889)
T KOG4658|consen 294 LTTRSEE-VCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGG-LPLALNVLGGLLACK 369 (889)
T ss_pred EEeccHh-hhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCC-hHHHHHHHHHHhcCC
Confidence 7776443 322223335557777788888777777766333221 1 14555667777777 556777776655444
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.13 Score=60.15 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++|+||+|+|||+++..++....
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999998877763
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.1 Score=48.56 Aligned_cols=24 Identities=50% Similarity=0.789 Sum_probs=17.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+.+++.||||+|||+++..++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999996555555554
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.38 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSA 515 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAk 515 (1268)
..++|.||.|.|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.27 Score=52.73 Aligned_cols=25 Identities=44% Similarity=0.674 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..+.|.||.|+||||++++++..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3568999999999999999998765
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF13654 AAA_32: AAA domain; PDB: 3K1J_B | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.025 Score=69.72 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=0.0
Q ss_pred CccccCcHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 470 FdDLVGQe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.+.++||+.++++|.-.+.-.+.+-++++.||+||||+++++.+.+....
T Consensus 7 ~~~~iGQ~RA~~Al~~gl~i~~~GYNIfv~G~~GtGr~t~v~~~l~~~a~ 56 (509)
T PF13654_consen 7 LEGIIGQERAVEALEFGLGIRKPGYNIFVMGPPGTGRRTYVRRFLEERAK 56 (509)
T ss_dssp --------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 37899999999999999887776778899999999999999999888753
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.14 Score=52.71 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
...++|.|+.|+|||++++.+++.+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999999864
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.48 Score=56.89 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|.||.|+||+++++.|.+.+
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhc
Confidence 479999999999999999998765
|
|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=93.17 E-value=0.45 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEcCCCchHHHHHHHHHHHhh
Q 000818 498 FQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 498 L~GPpGTGKTSLARaLAkaLn 518 (1268)
+.||||+||+++|+.||+.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 579999999999999999984
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.88 Score=51.47 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
+....++|.||||+||+|.++.||+.++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~ 57 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCL 57 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33467899999999999999999999853
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.35 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++|+||.|.|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.15 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 492 IAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 492 i~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.+..+++.|++|+|||++|+.|++.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357889999999999999999999874
|
|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.32 Score=56.39 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea 566 (1268)
...++|+||+|+|||+++..||........ ..+....++.|+.......+++.++.+.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~---------------~gg~~~~~~yi~te~~f~~~rl~~~~~~~ 160 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEE---------------KGGLEGKAVYIDTEGTFRPERIEQMAEAL 160 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccc---------------cCCCCceEEEEeCCCCcCHHHHHHHHHHc
Confidence 357899999999999999999865421000 01123467788876544567777776654
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.73 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..+||+||+|+||||+++++...++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999998874
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.35 Score=51.67 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 000818 496 YLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAka 516 (1268)
++|+||.|.|||++.+.++..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999843
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.77 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAka 516 (1268)
-++|.|++|+|||+++..|+..
T Consensus 8 kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998754
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK12337 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.47 Score=58.04 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 491 Ri~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
+.+..++|+|++|+|||++|..||..++.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~ 281 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI 281 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34578999999999999999999999854
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.9 Score=46.20 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=46.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCccccccccc-CCCccEEEEcCCCCcC----hHHHH-HHHHHHHc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS-GKSRNFMEVDGTNKKG----LDRVR-YILKHLSA 568 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~s-G~s~dfIEIDaSs~~g----Id~IR-eLIEea~~ 568 (1268)
.++|.|.+|+|||+++..|...-..... ..+.+....|..... -.+..+..||-+.... .+.+. .+...+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~--~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK--LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc--cCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 3789999999999999999744211111 111223334432211 1234566666543211 22333 33333332
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHH
Q 000818 569 GLPSASPRFKVFVIDECHLLPSKT 592 (1268)
Q Consensus 569 ~pp~~~g~~KVIIIDEaD~LS~ea 592 (1268)
.. .+-..||+|-.++.++...
T Consensus 80 ~~---~g~~~illVi~~~~~t~~d 100 (196)
T cd01852 80 SA---PGPHAFLLVVPLGRFTEEE 100 (196)
T ss_pred cC---CCCEEEEEEEECCCcCHHH
Confidence 21 2334566666677766544
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.23 Score=56.90 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++|.||.|+||||++..||..+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998873
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.33 Score=50.83 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..+.|.||.|+||||+.++++..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.086 Score=55.17 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=23.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+.++|.||+|+||||+++.|++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999998874
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.39 Score=59.33 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=88.8
Q ss_pred hhhhcCCCCCccccCcHHHHHHHHHHHHcC-----------CCCCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCC
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRG-----------RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529 (1268)
Q Consensus 461 L~eKYRP~tFdDLVGQe~vv~tLk~aIksg-----------Ri~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg 529 (1268)
|.....| .|.||+.++++|.-.+..| |-.-.+|+.|.|-|-|+.|.|.+.+..--..+-.
T Consensus 295 La~SLAP----SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TT----- 365 (818)
T KOG0479|consen 295 LARSLAP----SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATT----- 365 (818)
T ss_pred HhhccCc----ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccccccc-----
Confidence 3444455 5679999999988777543 1112689999999999999999865531111100
Q ss_pred CcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHcCC------
Q 000818 530 YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP------ 603 (1268)
Q Consensus 530 ~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~g~~KVIIIDEaD~LS~ea~naLLK~LEep------ 603 (1268)
..-.+|.+ +.++-.+.-+.-..-++. .. -..+.+.||.|||+|+|+.-..-++-.+||..
T Consensus 366 -----GRGSSGVG-----LTAAVTtD~eTGERRLEA-GA---MVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaK 431 (818)
T KOG0479|consen 366 -----GRGSSGVG-----LTAAVTTDQETGERRLEA-GA---MVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAK 431 (818)
T ss_pred -----CCCCCCcc-----ceeEEeeccccchhhhhc-Cc---eEEccCceEEehhcccccchhHHHHHHHHhcceEEeEe
Confidence 01111111 222111000100011121 11 13578889999999999988888888888854
Q ss_pred -------CCcEEEEEEeCCCC-------------CcchhhhcceeEE
Q 000818 604 -------PQRVVFIFITTDID-------------NVPRSIQSRCQKY 630 (1268)
Q Consensus 604 -------p~~vVfILaTn~~e-------------KL~pAL~SRcq~I 630 (1268)
..+|.+|.++|... .|+..|+||+..+
T Consensus 432 AGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 432 AGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred ccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 34666677776542 3788999999763
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.58 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
..++++|+||+|||+++..+|..+
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999886
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >TIGR00455 apsK adenylylsulfate kinase (apsK) | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.56 Score=49.69 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 490 gRi~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.+.+..++|.|++|+|||++++.|+..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34457899999999999999999999884
|
Important residue (active site in E.coli) is residue 100 of the seed alignment. |
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.2 Score=59.17 Aligned_cols=51 Identities=31% Similarity=0.551 Sum_probs=41.2
Q ss_pred CCCc-cccCcHHHHHHHHHHHHc-----CCCCCeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 468 IFFD-ELIGQNIVVQSLVNTISR-----GRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 468 ~tFd-DLVGQe~vv~tLk~aIks-----gRi~~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..|+ ++.|.++.+..|.+.++. +.-..+++|.||.|+||+++++.|.+.+.
T Consensus 57 ~~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 57 PFFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3566 899999999888776653 22236899999999999999999999884
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.12 Score=56.42 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=23.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
+.++|.||||+||||+++.||+.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999999985
|
|
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.87 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
++|.||||+||||+|+.||+.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999998753
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.71 Score=49.43 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=57.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHHHcCCCCCC
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea~~~pp~~~ 574 (1268)
-++++|+.|+|||+++..|.......... |-..-..-...... ....+.+.--+..|.+.++.+.......
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~---~t~~~~~~~~~~~~-~~~~~~~~~~Dt~gq~~~~~~~~~y~~~----- 77 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYP---PTIGNLDPAKTIEP-YRRNIKLQLWDTAGQEEYRSLRPEYYRG----- 77 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCC---CceeeeeEEEEEEe-CCCEEEEEeecCCCHHHHHHHHHHHhcC-----
Confidence 47999999999999999998776432111 00000000000000 0001112222334567777777776533
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHcC-CCCcEEEEEEeCCCCC
Q 000818 575 PRFKVFVIDECH-LLPSKTWLAFLKFLEE-PPQRVVFIFITTDIDN 618 (1268)
Q Consensus 575 g~~KVIIIDEaD-~LS~ea~naLLK~LEe-pp~~vVfILaTn~~eK 618 (1268)
...-+++.|... .-..+....+...+.+ .+..+.+|++.|..+.
T Consensus 78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 78 ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 233355555544 2233333334433333 2246778888777663
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.65 Score=58.94 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHcCCCCCeEEEEcCCCchHHHHHHH
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512 (1268)
Q Consensus 476 Qe~vv~tLk~aIksgRi~~ayLL~GPpGTGKTSLARa 512 (1268)
|..++..+...+.... +...|+.||.|+|||.++-.
T Consensus 240 Q~~ai~~I~~~~~~~~-~~~~Ll~g~TGSGKT~va~l 275 (630)
T TIGR00643 240 QKRVVKEILQDLKSDV-PMNRLLQGDVGSGKTLVAAL 275 (630)
T ss_pred HHHHHHHHHHHhccCC-CccEEEECCCCCcHHHHHHH
Confidence 7888877777665443 34579999999999997743
|
|
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.48 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.-.+|+||+|+|||++++.|++.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34699999999999999999999854
|
|
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=92.72 E-value=1 Score=54.56 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
...++|.||+|+|||++|..||+.+++
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 357999999999999999999999853
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.72 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
-.++|+||.|+||+++.+++|.-+.
T Consensus 30 e~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccC
Confidence 4589999999999999999997764
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.8 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 000818 496 YLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 496 yLL~GPpGTGKTSLARaLAka 516 (1268)
++|.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988653
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=60.77 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHcCCCCcEEEEEEeCCCC
Q 000818 575 PRFKVFVIDECH-LLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 575 g~~KVIIIDEaD-~LS~ea~naLLK~LEepp~~vVfILaTn~~e 617 (1268)
.+.+++||||+- .|.++....|...|++.-+.+.+|-++.++.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT 575 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchh
Confidence 466799999985 4678889999999988545777777776554
|
|
| >TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.35 Score=60.14 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
+..+||+|+||+||||+|+.++...
T Consensus 369 p~LVil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 369 CEMVIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998775
|
Note that the EC number for the kinase function is: 2.7.1.78 |
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.21 Score=55.51 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCC---cChHHHHHHHHHHHcCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK---KGLDRVRYILKHLSAGL 570 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~---~gId~IReLIEea~~~p 570 (1268)
..|+|+||+|||||.+|-.+|+.++ .+++..|...- ..+..-+....+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g------------------------~pvI~~Driq~y~~l~v~Sgrp~~~e----- 52 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG------------------------APVISLDRIQCYPELSVGSGRPTPSE----- 52 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--------------------------EEEEE-SGGG-GGGTTTTT---SGG-----
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC------------------------CCEEEecceecccccccccCCCCHHH-----
Confidence 3699999999999999999999984 34555543210 000000011111
Q ss_pred CCCCCCcEEEEEeCCCC----CC-HHHHHHHHHHHcCCCCcEEEEEEeCCCCCcchhhhcc-------eeEEEecCCCHH
Q 000818 571 PSASPRFKVFVIDECHL----LP-SKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR-------CQKYLFNKIKDG 638 (1268)
Q Consensus 571 p~~~g~~KVIIIDEaD~----LS-~ea~naLLK~LEepp~~vVfILaTn~~eKL~pAL~SR-------cq~I~F~pLs~e 638 (1268)
..+-.+ +++||-.. ++ .++.+.|+..+.+...+-.+|+-.....-|..-+.++ ..+..+.-++.+
T Consensus 53 --l~~~~R-iyL~~r~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~ 129 (233)
T PF01745_consen 53 --LKGTRR-IYLDDRPLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEE 129 (233)
T ss_dssp --GTT-EE-EES----GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HH
T ss_pred --Hcccce-eeeccccccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChH
Confidence 223344 55555321 22 3456677777877766777788776655222212221 233445545555
Q ss_pred HHHHHHHHHHHh
Q 000818 639 DIVARLRKISAE 650 (1268)
Q Consensus 639 EI~~iL~kiakk 650 (1268)
.....+++++++
T Consensus 130 ~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 130 VFMARAKRRVRQ 141 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.11 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++|.|++|+||||+|+.|++.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4699999999999999999999874
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PHA03311 helicase-primase subunit BBLF4; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.4 Score=56.32 Aligned_cols=29 Identities=38% Similarity=0.801 Sum_probs=26.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVAT 522 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~ 522 (1268)
.+||++|..|+|||+.++.|.+.++|...
T Consensus 72 s~~~itG~AGsGKst~i~~l~~~l~cvit 100 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQTLNENLDCVIT 100 (828)
T ss_pred EEEEEecCCCCChHHHHHHHHHhcCEEEE
Confidence 58999999999999999999999988653
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.11 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhhc
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLnc 519 (1268)
.++|.|++|+||||+++.|++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3799999999999999999999853
|
|
| >PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.65 Score=59.16 Aligned_cols=30 Identities=37% Similarity=0.778 Sum_probs=27.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhhcccCC
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATD 523 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLnce~~e 523 (1268)
.+|||+|..|.|||+.++.|++.|+|....
T Consensus 60 ~~ylITGtAGaGKStsIq~L~~~ldCviTG 89 (818)
T PF02689_consen 60 SVYLITGTAGAGKSTSIQTLAENLDCVITG 89 (818)
T ss_pred EEEEEeccCCCCccchHHHHHhhhCeEEec
Confidence 689999999999999999999999996643
|
; GO: 0004386 helicase activity, 0005524 ATP binding |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.11 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaL 517 (1268)
.++|.|++|+|||++++.||+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999998
|
|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.73 Score=53.10 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhhcccCCCCCCCCCcccccccccCCCccEEEEcCCCCcChHHHHHHHHHH
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566 (1268)
Q Consensus 493 ~~ayLL~GPpGTGKTSLARaLAkaLnce~~e~~~PCg~C~sC~~i~sG~s~dfIEIDaSs~~gId~IReLIEea 566 (1268)
...++|+||||+|||+++-.+|..... +.. ..+....++.|+.......+.+.++++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~--~~~-------------~g~~~~~~~yi~te~~f~~~rl~~~~~~~ 153 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQL--PEE-------------KGGLGGKAVYIDTENTFRPERIMQMAEAR 153 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC--Ccc-------------cCCCcceEEEEECCCCCCHHHHHHHHHHc
Confidence 357899999999999999999766421 000 00112377888876644566777776654
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.4 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhh
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
.-+|.||+|+|||+++..+|.++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999998874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.21 Score=58.53 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhh
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLL~GPpGTGKTSLARaLAkaLn 518 (1268)
..++++||+|+|||+++-.++....
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999887653
|
RecA couples ATP hydrolysis to DNA strand exchange. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1268 | ||||
| 1njg_A | 250 | Nucleotide-Free Form Of An Isolated E. Coli Clamp L | 5e-41 | ||
| 3glf_B | 395 | Crystal Structure Of The Ecoli Clamp Loader Bound T | 5e-40 | ||
| 1xxi_B | 368 | Adp Bound E. Coli Clamp Loader Complex Length = 368 | 6e-40 | ||
| 3glh_B | 376 | Crystal Structure Of The E. Coli Clamp Loader Bound | 7e-40 | ||
| 1jr3_A | 373 | Crystal Structure Of The Processivity Clamp Loader | 7e-40 | ||
| 3glg_B | 395 | Crystal Structure Of A Mutant (Gammat157a) E. Coli | 2e-39 | ||
| 1iqp_A | 327 | Crystal Structure Of The Clamp Loader Small Subunit | 2e-19 | ||
| 2chg_A | 226 | Replication Factor C Domains 1 And 2 Length = 226 | 4e-19 | ||
| 2chq_A | 319 | Replication Factor C Adpnp Complex Length = 319 | 2e-18 | ||
| 1sxj_D | 353 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 3e-12 | ||
| 1sxj_C | 340 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 3e-12 | ||
| 1sxj_B | 323 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 1e-09 | ||
| 3u5z_B | 324 | Structure Of T4 Bacteriophage Clamp Loader Bound To | 2e-06 | ||
| 1jr3_E | 334 | Crystal Structure Of The Processivity Clamp Loader | 4e-05 | ||
| 1xxh_E | 334 | Atpgs Bound E. Coli Clamp Loader Complex Length = 3 | 9e-05 |
| >pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 | Back alignment and structure |
|
| >pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368 | Back alignment and structure |
|
| >pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 | Back alignment and structure |
|
| >pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373 | Back alignment and structure |
|
| >pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 | Back alignment and structure |
|
| >pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226 | Back alignment and structure |
|
| >pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319 | Back alignment and structure |
|
| >pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 | Back alignment and structure |
|
| >pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 | Back alignment and structure |
|
| >pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 | Back alignment and structure |
|
| >pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324 | Back alignment and structure |
|
| >pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 334 | Back alignment and structure |
|
| >pdb|1XXH|E Chain E, Atpgs Bound E. Coli Clamp Loader Complex Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 1e-92
Identities = 105/370 (28%), Positives = 185/370 (50%), Gaps = 17/370 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L + A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD--NVQYAPARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+L I EE++ EP AL L+A A+GSLRDA ++ DQ ++ ++++ V+ ++G
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI----IAGTYTI 755
+ +++ L L+E + ++ + E G++ L+ ++ L+ I ++
Sbjct: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303
Query: 756 GGRSLTEAELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806
+ E + L + + L K+L + +R TLL+ + P
Sbjct: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA-FHPR 362
Query: 807 LTQSGSSRRQ 816
+ +
Sbjct: 363 MPLPEPEVPR 372
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 2e-79
Identities = 87/241 (36%), Positives = 140/241 (58%), Gaps = 3/241 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LN
Sbjct: 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PCG C C + G+ + +E+D ++ ++ R +L + A RFK
Sbjct: 71 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD--NVQYAPARGRFK 128
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ +
Sbjct: 129 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 188
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
I +L I EE++ EP AL L+A A+GSLRDA ++ DQ ++ ++++ V+ ++
Sbjct: 189 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 248
Query: 698 G 698
G
Sbjct: 249 G 249
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Length = 305 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 7e-54
Identities = 56/307 (18%), Positives = 108/307 (35%), Gaps = 28/307 (9%)
Query: 500 GPRGTGKTSTAKIFSAALNCV-------ATDQTKPCGYCRECNDFISGKSRNFMEVDG-T 551
G + +T +I + + + E + K+ + +E+D
Sbjct: 1 GAKDQLET-LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG 59
Query: 552 NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611
G+D +R I K ++ +C + + AFLK LEEPP+ V +
Sbjct: 60 ENIGIDDIRTIKD--FLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVL 117
Query: 612 ITTDIDNVPRSIQSRCQKYLFNKIKD------GDIVARLRKIS-AEENLNVEPDALDLIA 664
T + +I+SR + + N K+ I ++ E + +A L A
Sbjct: 118 NTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGA 177
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA 724
G L ++ +L+ LL K + L G ++ +LLE S + +
Sbjct: 178 EKLSG-LMESLKVLETEKLLKKVL----SKGLEGYLACRELLERFSKVESKEFFALFDQV 232
Query: 725 RELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR---SLTEAELERLKHALKLLSEAEKQ 781
+ G D +L+ +L +I+ + L ++ + L+
Sbjct: 233 TNTIT-GKDAFLLIQRLTRIILHENTWESVEDQKSVSFLDSILRVKIANLNNKLT-LMNI 290
Query: 782 LRLSSER 788
L + ER
Sbjct: 291 LAIHRER 297
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 7e-52
Identities = 64/322 (19%), Positives = 105/322 (32%), Gaps = 41/322 (12%)
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
+ LV + GR L Q G G + S L C K CG+CR C
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 536 DFISGKSRNFMEVDGTNKK---GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT 592
+G ++ + K G+D VR + + L+ + KV + + LL
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN--EHARLGGAKVVWVTDAALLTDAA 124
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN 652
A LK LEEPP F T + + + +++SRC+ + + V L
Sbjct: 125 ANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SRE 179
Query: 653 LNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELA 712
+ + DAL + GS A + + + +L L V LL
Sbjct: 180 VTMSQDALLAALRLSAGSPGAALALFQGDNW---QARETLCQALAYSVPSGDWYSLLAAL 236
Query: 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE-------- 764
+ LA+L+MD + + + +
Sbjct: 237 NHEQAPA-----------------RLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN 279
Query: 765 ---LERLKHALKLLSEAEKQLR 783
RL+ L + +QL
Sbjct: 280 HLSPSRLQAILGDVCHIREQLM 301
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-43
Identities = 79/340 (23%), Positives = 148/340 (43%), Gaps = 41/340 (12%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P DE++GQ+ V+Q L + R I P LF GP GTGKT+TA
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIAL---------- 58
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
R+ F NF+E++ ++++G+D VR+ +K + P FK+ +D
Sbjct: 59 -------ARDL--FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLD 109
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E L + A + +E + FI + + IQSRC + F + + R
Sbjct: 110 EADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKR 169
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEE 703
L +I +E + + D L+ + + G R A L + +G+ + + + ++ E
Sbjct: 170 LLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPE 229
Query: 704 KLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTE 762
++ EL++ A+ + E + LM + G+ +++QL I+ + + +
Sbjct: 230 EMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM----------PIKD 279
Query: 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +L + L E + +L +E +QL +
Sbjct: 280 SLKVQL---IDKLGEVDFRL---TEGAN----ERIQLDAY 309
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 8e-42
Identities = 81/340 (23%), Positives = 143/340 (42%), Gaps = 41/340 (12%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P D+++GQ +V+ L + + G + P LF GP G GKT+ A AL
Sbjct: 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSM-PHLLFAGPPGVGKTTAAL----AL------ 66
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
RE F NF+E++ ++++G++ +R +K + P FK+ +D
Sbjct: 67 -------AREL--FGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLD 117
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E L A + +E V FI + IQSRC + F ++D DI R
Sbjct: 118 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 177
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEE 703
LR I+ E L + + L I A+G +R A +L + L K+IT V + E
Sbjct: 178 LRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPE 237
Query: 704 KLLELLELAMSSDTAETVKRARELMDS-GVDPMVLMSQLASLIMDIIAGTYTIGGRSLTE 762
+ E++ LA+ + + ++ RE++ G+ ++ Q+ + ++
Sbjct: 238 DIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKV------ 291
Query: 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +L E ++QL ++
Sbjct: 292 -------LLADKIGEYNFRL---VEGAN----EIIQLEAL 317
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-41
Identities = 59/360 (16%), Positives = 129/360 (35%), Gaps = 42/360 (11%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA-----KIFSAALN 518
KY+P + L + L + + R P L GP GTGK + IF +
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 66
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDR--VRYILK--------HLSA 568
+ D + + S +E+ ++ DR ++ +LK
Sbjct: 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 126
Query: 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
+ R+K +I+E + L A + +E+ + + I + + + I+S+C
Sbjct: 127 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186
Query: 629 KYLFNKIKDGDIVARLRKISAEENLNVEP-DALDLIALNADGSLRDAETMLDQLSLLGKR 687
D +I L + E + +E D L IA ++G+LR + ML + L
Sbjct: 187 LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML-ESMALNNE 245
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAR----ELMDSGVDPMVLMSQLAS 743
+ + ++ + +L + + ++ R +L+ + +++ +L
Sbjct: 246 LALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTF 305
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHAL-KLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
++D+ K ++ + S +++L L ++ + L
Sbjct: 306 SLLDVETLN-------------TTNKSSIIEYSSVFDERLSLGNK-------AIFHLEGF 345
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 147 bits (371), Expect = 2e-38
Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 63/313 (20%)
Query: 470 FDELIGQNIV---VQSLVNTISRGRIAP-VYLFQGPRGTGKTSTAKIFSAALNCVATDQT 525
++GQ ++ I G+IA L G GTGKT+ A + AL
Sbjct: 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA 102
Query: 526 KPCGYCRECN--------------------------------DFISGKSRNFMEVDGTNK 553
D I+ +++ F+ + +
Sbjct: 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDT 162
Query: 554 KGL-DRVRYILKHLSAGLP---SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVF 609
+ VR + A A V IDE H+L +++ + LE V+
Sbjct: 163 GEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVL- 221
Query: 610 IFITTDIDN------------VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEP 657
I T +P + R + D LR EE++ +
Sbjct: 222 IMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSE 281
Query: 658 DALDLIA-LNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD 716
DA ++ + + SLR A ++ SL+ ++ V + + + L + D
Sbjct: 282 DAYTVLTRIGLETSLRYAIQLITAASLVCRK-------RKGTEVQVDDIKRVYSLFL--D 332
Query: 717 TAETVKRARELMD 729
+ + + +E D
Sbjct: 333 ESRSTQYMKEYQD 345
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 6e-37
Identities = 66/346 (19%), Positives = 137/346 (39%), Gaps = 47/346 (13%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P DE+ GQN V+ ++ + G++ P LF GP GTGKTST + +
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKL-PHLLFYGPPGTGKTSTIVALAREI------ 70
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
+ S +E++ ++ +G+D VR +K ++ S FK+ ++D
Sbjct: 71 -------------YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILD 117
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E + + A + +E + F + + ++ S+C ++ F + I R
Sbjct: 118 EADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERR 177
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETML-----DQLSLLGKRITSSLVNELVG 698
+ + E L + P+A + ++G +R +L + I+ ++ E G
Sbjct: 178 IANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDS-GVDPMVLMSQLASLIMDIIAGTYTIGG 757
L +L+ + D ++ + G+ + L+ + ++ D
Sbjct: 238 APRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY--------- 288
Query: 758 RSLTEAELERLK-HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
E + E + H L L++ E + S+ +Q ++
Sbjct: 289 ----ELQNEETRVHLLTKLADIEYSI---SKGGN----DQIQGSAV 323
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 65/340 (19%), Positives = 130/340 (38%), Gaps = 42/340 (12%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P +++G + L G + P + G G GKT++ + L
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNM-PHMIISGMPGIGKTTSVHCLAHEL------ 66
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH-LSAGLPSASPRFKVFVI 582
+ +E++ ++ +G+D VR +KH L + K+ ++
Sbjct: 67 -------------LGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + + A + +E F F + + +QS+C ++K+ D D++
Sbjct: 114 DEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLK 173
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RL +I E++ D L+ I A+G +R A L + + V ++V
Sbjct: 174 RLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHP 233
Query: 703 EKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTE 762
+ ++L + D+ + ++ +L G +DI+ ++ +
Sbjct: 234 LIVKKMLLASNLEDSIQILR--TDLWKKGYSS-----------IDIVTTSFRVTKNLAQV 280
Query: 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
E RL+ +K + ++ E T LQL SM
Sbjct: 281 KESVRLE-MIKEIGLTHMRI---LEGVG----TYLQLASM 312
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 9e-35
Identities = 79/347 (22%), Positives = 133/347 (38%), Gaps = 38/347 (10%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P DE+ Q+ V L T+ + P LF GP GTGKTST + +
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANL-PHMLFYGPPGTGKTSTIL-------ALTKE 81
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
P + ++ + + K R+ P +K+ ++D
Sbjct: 82 LYGP-DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILD 140
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E + + A + +E F I + + + S+C K+ F + + + R
Sbjct: 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDR 200
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK------RITSSLVNELV 697
LR IS +EN+ + L+ I + G LR T+L S + ITS+ V EL
Sbjct: 201 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 260
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
GVV + L+E++E S D E K M SG +++QL +
Sbjct: 261 GVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFD----- 315
Query: 758 RSLTEAELERLKHAL-KLLSEAEKQLRL-SSERCTWFTATLLQLGSM 802
K+ + LL + +L ++E +QL ++
Sbjct: 316 --------TNFKNQISWLLFTTDSRLNNGTNEH--------IQLLNL 346
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 20/236 (8%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P DE++GQ+ V+Q L + R I P LF GP GTGKT+TA
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIAL---------- 58
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
R+ F NF+E++ ++++G+D VR+ +K + P FK+ +D
Sbjct: 59 -------ARDL--FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLD 109
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E L + A + +E + FI + + IQSRC + F + + R
Sbjct: 110 EADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKR 169
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
L +I +E + + D L+ + + G R A L + +G+ + + + ++
Sbjct: 170 LLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITAT 225
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 9e-25
Identities = 55/349 (15%), Positives = 107/349 (30%), Gaps = 59/349 (16%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISR----------------GRIAPVYLFQGPRGTGKT 507
KY P ++ G V L N ++ + + GP G GKT
Sbjct: 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 91
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--- 564
+ A VA + GY + +E + ++ + + +K
Sbjct: 92 TAAH-------LVA----QELGY-------------DILEQNASDVRSKTLLNAGVKNAL 127
Query: 565 ---------HLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--PQRVVFIFIT 613
+ + + + V ++DE + + L + I I
Sbjct: 128 DNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-RGGVGQLAQFCRKTSTPLILIC 186
Query: 614 TDIDN-VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLR 672
+ + R C F + I +RL I+ E ++P+ +D + G +R
Sbjct: 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIR 246
Query: 673 DAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGV 732
+L +S K I +NE+ + L+ ++A + +
Sbjct: 247 QVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLN 306
Query: 733 DPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE---LERLKHALKLLSEA 778
D + L +I Y S+ + LE + A +S
Sbjct: 307 DKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLG 355
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 69/331 (20%), Positives = 122/331 (36%), Gaps = 59/331 (17%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPR-GTGKTSTAKIFSAALNCVA 521
QKY+P DE I ++ + S+G+I P + P GTGKT+ AK +N
Sbjct: 18 QKYRPSTIDECILPAFDKETFKSITSKGKI-PHIILHSPSPGTGKTTVAKALCHDVNA-- 74
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+ M V+G++ +D VR L + A S R KV V
Sbjct: 75 ----------------------DMMFVNGSD-CKIDFVRGPLTNF-ASAASFDGRQKVIV 110
Query: 582 IDEC-HLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD- 639
IDE +++ F+E I +ID + + +QSRC+ F + D D
Sbjct: 111 IDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDK 170
Query: 640 ------IVARLRKISAEENLNV-EPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL 692
++ RL +I E + + + + + R LD S G + + +
Sbjct: 171 IEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKGV-LDAGI 229
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDS-GVDPMVLMSQLASLIMDIIAG 751
++ + + ++LE + D VK+ R L D + +LA I +
Sbjct: 230 LSLVTND--RGAIDDVLESLKNKD----VKQLRALAPKYAADYSWFVGKLAEEIYSRVTP 283
Query: 752 TYTIGGRSLTEAELERLKHALKLLSEAEKQL 782
+ + +++ E +
Sbjct: 284 --------------QSIIRMYEIVGENNQYH 300
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Length = 343 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 4e-14
Identities = 28/233 (12%), Positives = 77/233 (33%), Gaps = 29/233 (12%)
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRS------IQSRCQKYLF 632
+ ++ + + L ++ I + + + +R +
Sbjct: 80 LLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITS 690
+ + + + + NL ++ A ++ +G+L L++LSLL ++T
Sbjct: 140 QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTL 199
Query: 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
V + V + ++ + + + ++L G +P++L+ L ++ ++
Sbjct: 200 PRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVN 259
Query: 751 GTYTIGGRSLTEA---------------------ELERLKHALKLLSEAEKQL 782
L +L+ A++LL+ E L
Sbjct: 260 LKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTL 312
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 4e-13
Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 232/698 (33%)
Query: 144 DTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILAR 203
D GE++ ++ +D ++SV A K + D K I+
Sbjct: 8 DFETGEHQ----YQYKD--ILSVFEDAFVDNFDCK-------DVQDMP-----KSIL--- 46
Query: 204 NSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKE 263
+ + D + D L L K K ++ +
Sbjct: 47 SKEEI----DHIIMSKDAVS--------GTLR----LFWTLLSKQ-EEMVQKFVEEVLRI 89
Query: 264 D-----SSYSYST--PALSTSSYNRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGR 316
+ S P++ T Y +R NDN ++
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDR-------------LYNDNQVFAKYNV----- 131
Query: 317 QGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLR--RKGSSIL------CGSQTMYHGRRR 368
R + L L R ++L G +
Sbjct: 132 ----------SRLQPYL---------KLRQALLELRPAKNVLIDGVLGSGKTWV------ 166
Query: 369 SSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDG 428
+ V ++ + + L ++ S + + LE L +L
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWL-----------NLKNCNSPETV--------LEMLQKLLY 207
Query: 429 RRWSSSCRSQDGLEIVALNGEEEEG----------------VLENIRSLSQKYKPIFFDE 472
+ + D + L + VL N+++ ++ + F+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNA--FN- 263
Query: 473 LIGQNIVV----QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD----- 523
+ I++ + + + +S + L + L+C D
Sbjct: 264 -LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 524 -QTKP-----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR- 576
T P D ++ N+ V+ D++ I++ L A R
Sbjct: 323 LTTNPRRLSIIA--ESIRDGLA-TWDNWKHVN------CDKLTTIIESSLNVLEPAEYRK 373
Query: 577 -FKVFVI--DECHLLPSKT----WLA--------FLKFL-------EEPPQRVVFIF--- 611
F + H +P+ W + L ++P + + I
Sbjct: 374 MFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 612 --ITTDIDNVP---RSI-------QSRCQKYLFNKIKDGDI---VAR-LRKISAEENLNV 655
+ ++N RSI ++ L D + L+ I E + +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 656 EPDA-LDL-----------IALNADGSLRDAETMLDQLSLLGKRITSS------LVNELV 697
LD A NA GS+ + L QL I + LVN ++
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILN---TLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 698 GVV--SEEKLLE-----LLELAMSSDTAETVKRA-REL 727
+ EE L+ LL +A+ ++ + A +++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 85/595 (14%), Positives = 185/595 (31%), Gaps = 157/595 (26%)
Query: 661 DLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAET 720
D++++ D + + + D + ++ ++ ++ L + S E
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 721 VKRARELMDSGVDP--MVLMSQLA------SLIMDIIAGT----YTIGGRSLTEAELERL 768
V++ ++ + LMS + S++ + Y + + + RL
Sbjct: 79 VQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRL 134
Query: 769 KHALKLLSEAEKQLR-----------------LSSERCT-------------WFTATLLQ 798
+ LK L +A +LR ++ + C W L
Sbjct: 135 QPYLK-LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-----LN 188
Query: 799 LGSMHSPDLT----QSGSSRRQSSRTTEEDPSSTSR----EAVVYKR--MSGPQYMPQNA 848
L + +SP+ Q + + T+ D SS + R + Y +N
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENC 246
Query: 849 ------VSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVG 902
V A N + + L + +R K L A +S + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKIL--LTTR-------FKQVTDFLSAATTTHISLDHHSMT 297
Query: 903 NTIITCRNSEKLGEIWAQCIERCHSKTL-KQLLQVHGKLLS-ISEVERVLIAYVAFGDGD 960
T E + + ++ C + L +++L + + LS I+E R D
Sbjct: 298 LT-----PDEVK-SLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIR-----------D 339
Query: 961 IKSRAERFLSSITNSIETVLRRNVEV-----------RIILLPDGEASI---------HH 1000
+ + + + + T++ ++ V R+ + P A I
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFD 398
Query: 1001 GISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEG 1060
I +++ + K + +E++ K + Y + + + +N +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 1061 KFKGEDDHSNCSPLFADG--NSEIS---STKGRRQEIPMQRIESIIREQRLETAWLQA-- 1113
D + P + D S I + + + R L+ +L+
Sbjct: 459 F-----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL------FRMVFLDFRFLEQKI 507
Query: 1114 ----TEKGAPGS----LGHLRPEKNQVLPQEDIYRQ----------NHMESLLSS 1150
T A GS L L+ K + + Y + E+L+ S
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 5e-08
Identities = 65/527 (12%), Positives = 129/527 (24%), Gaps = 191/527 (36%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASA------SGSAW----- 56
L+L++ L ++R A + G S K+ +A V + W
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKT------WVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 57 ----------------KINNNNKQLVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSET 100
+I+ N D +N+ + ++ E R L + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCL--- 247
Query: 101 SAVARNDDDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRD 160
+ + + ++ + + + C+
Sbjct: 248 ----------LVLLNVQN---AKAWNAFN--------------------------LSCK- 267
Query: 161 ANLVSVATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSD 220
+ + T R K ++D L+ I L + ++ L DE
Sbjct: 268 ---ILLTT--------------RFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSL-- 306
Query: 221 DTEDYCNSEDFRKYSG------------ASPLLLKL-----KH-----KNWSHSSSKLLK 258
KY +P L + + NW H + L
Sbjct: 307 ----------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 259 GGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQG 318
+SS + PA ++R + +P
Sbjct: 357 --TIIESSLNVLEPAEYRKMFDRLS------V----------------FPPSAHIPTIL- 391
Query: 319 CGIPCYWSKRTPKH-RGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRR 377
+ W V SL + ++ + + + + ++
Sbjct: 392 --LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 378 MASRSAQGVLP---LLANNGDGRAGSSIG-------TGRSDDELSTNFGELDLEALS--- 424
+ + L+ D S IG F LD L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQKI 507
Query: 425 RLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFD 471
R D W++S + L+ ++ YKP D
Sbjct: 508 RHDSTAWNASGSILN--------------TLQQLK----FYKPYICD 536
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 3e-09
Identities = 36/244 (14%), Positives = 73/244 (29%), Gaps = 19/244 (7%)
Query: 454 VLENIRS-LSQKYKPIFFDELIGQNIVVQSLVNTIS---RGRIAPVYLFQGPRGTGKTST 509
V++N + + E+ + +++ I + + LF G GTGKT
Sbjct: 5 VIKNPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFV 61
Query: 510 AKIFSAALNCVATDQTKPCGYCR---ECNDFISGKSRNFMEV--DGTNKKGLDRVRYILK 564
+K + V + + + C + + T + +
Sbjct: 62 SKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGE 121
Query: 565 HLSAGLPSASPRFKVFVIDEC-HLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV---- 619
++ + +DE L+ + L L + I I+ DI+
Sbjct: 122 YIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYME 181
Query: 620 PRSIQSRCQKYLFNKIKDGDIVARL--RKISAEENLNVEPDALDLIALNADGSLRDAETM 677
PR + S +F + L + + L IA + DA
Sbjct: 182 PRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKA 241
Query: 678 LDQL 681
++ L
Sbjct: 242 VNLL 245
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 49/289 (16%), Positives = 89/289 (30%), Gaps = 32/289 (11%)
Query: 454 VLENIRSLSQKYKPIFFDELIG----QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+ N L Y P DEL + L + ++++ G GTGKT+
Sbjct: 6 IFINREYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIY-GLTGTGKTAV 61
Query: 510 AKIFSAALNCVATDQTKPCGY----CRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH 565
K L+ + + R+ + + +D + + +
Sbjct: 62 VK---FVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRR 118
Query: 566 LSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFL-----EEPPQRVVFIFITTDID--- 617
L + + V V+DE K L L E ++ FI IT D+
Sbjct: 119 LVKAVRDYGSQV-VIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177
Query: 618 NVPRSIQSRC--QKYLFNKIKDGDIVARL--RKISAEENLNVEPDALDLIALNADGSLRD 673
+ ++S ++ +F ++ L R A + + + + L A A D
Sbjct: 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD 237
Query: 674 AETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVK 722
A LD L + V EE + E + +
Sbjct: 238 ARRALDLL----RVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIIL 282
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 2e-08
Identities = 53/293 (18%), Positives = 86/293 (29%), Gaps = 29/293 (9%)
Query: 451 EEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTIS---RGRIAPVYLFQGPRGTGKT 507
E + L Y P D L + ++ L ++ RG L G GTGKT
Sbjct: 2 ESKIFRKRWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKT 58
Query: 508 STAKIFSAALNCVATDQTKPCGY----CRECNDFISGKSRNFMEVDGTNKKGLDRVRYIL 563
+ A++ L A+ R S V V +
Sbjct: 59 AVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVY 118
Query: 564 KHLSAGLPSASPRFKVFVIDECHLLPSKT-------WLAFLKFLEEPPQRVVFIFITTDI 616
+ L L S + V+DE LP + + + V + IT +
Sbjct: 119 ERLVKRL-SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177
Query: 617 D---NVPRSIQSRC--QKYLFNKIKDGDI--VARLRKISAEENLNVEPDALDLIALNADG 669
N+ ++S + +F + + R A ++PD + L A A
Sbjct: 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237
Query: 670 SLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVK 722
DA LD L + V E + +E V+
Sbjct: 238 EHGDARRALDLL----RVAGEIAERRREERVRREHVYSARAEIERDRVSEVVR 286
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 2e-08
Identities = 52/392 (13%), Positives = 105/392 (26%), Gaps = 50/392 (12%)
Query: 453 GVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTI-----SRGRIAPVYLFQGPRGTGKT 507
++ + S Y P L + +Q L + + G P G GTGKT
Sbjct: 2 AIVVDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKT 58
Query: 508 STAKIFSAALNCVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH 565
T + T + R I +R+ D +L
Sbjct: 59 VTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVE 118
Query: 566 LSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ----RVVFIFITTDIDNVPR 621
+ V+D+ L F++ +E + R+ + + + +
Sbjct: 119 ----HLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174
Query: 622 ---SIQSRC--QKYLFNKIKDGDIVA--RLRKISAEENLNVEPDALDLIALNADGSLRDA 674
S + F+ I R + + D L +IA
Sbjct: 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLD 234
Query: 675 ETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD----TAETVKRARELMDS 730
D + + L A + E V+++ + +
Sbjct: 235 TNRGDARLAI------------------DILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276
Query: 731 GVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCT 790
G+ VL+ + ++A ++ + + K++ E + +
Sbjct: 277 GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQ-- 334
Query: 791 WFTATLLQLGSMHSPDLTQSGSSRRQSSRTTE 822
+ L L + Q+ RTT
Sbjct: 335 -LWSYLNDLREKGIVETRQNKRGEGVRGRTTL 365
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Length = 199 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 5e-07
Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 15/170 (8%)
Query: 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG--KSRNFMEVDG 550
A + L G G+GKT A D+ G R+ I G ++E D
Sbjct: 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDEN---GIRRKVFTNIKGLKIPHTYIETDA 61
Query: 551 TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECH-LLPSKTWLA----FLKFLEEPPQ 605
+ + + + ++DE + P+++ + +++L
Sbjct: 62 KKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNT--H 119
Query: 606 R---VVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN 652
R + +T + +++++ +K+ + L ++
Sbjct: 120 RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMRTLLEWKICADD 169
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Length = 318 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 8e-06
Identities = 32/295 (10%), Positives = 87/295 (29%), Gaps = 30/295 (10%)
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKP--------CGY 530
+ + +++ + Y+ + K L + + P
Sbjct: 32 IFLPIYDSLMSSQNKLFYIT-NADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90
Query: 531 CRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS 590
+ + + L+ L +P A R + +I L S
Sbjct: 91 LAGMDALYEKIWFAISKENLCGDISLEA----LNFYITNVPKAKKRKTLILIQNPENLLS 146
Query: 591 KTWL-AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL------FNKIKDGDIVAR 643
+ L F K++ ++ I + + I NK+ ++
Sbjct: 147 EKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQM 206
Query: 644 L--RKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
+ R S + +V+ + + + + + + D + ++ +I + + + V+
Sbjct: 207 IITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVA 266
Query: 702 EE-----KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
K ++ E A+ + ++ R+ +V + + I G
Sbjct: 267 NVSGSTEKAFKICEAAV--EISKK-DFVRKGGLQKGKLVVSQEMVPRYFSEAING 318
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Length = 446 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 15/172 (8%)
Query: 441 LEIVALNGEEEEGVLENI-RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQ 499
+ L +E + + R ++ + + + ++ + + L + A V L
Sbjct: 108 YHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVD 167
Query: 500 GPRGTGKTST-AKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDR 558
G G GKT + + + R+ + I R G D
Sbjct: 168 GVPGCGKTKEILSRVNFEEDLILV-------PGRQAAEMI----RRRANASGIIVATKDN 216
Query: 559 VRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610
VR + L A +FK IDE +L + ++
Sbjct: 217 VRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMS--LCDIAYVY 266
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 9e-05
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 67/256 (26%)
Query: 471 DELIGQNIVV---QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKP 527
+ IGQ ++ + L I G + + L+ GP GTGKT+ A++ + N
Sbjct: 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEVIARYANA-------- 76
Query: 528 CGYCRECNDFI------SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
D SG E+ ++ ++R R ++ +AG + +FV
Sbjct: 77 --------DVERISAVTSGVK----EI----REAIERAR---QNRNAGRRTI-----LFV 112
Query: 582 IDECHLLPSKTWL-AFLKFLEEPPQRVVFIFITTDIDN----VPRSIQSRCQKYLFNKIK 636
DE H +K+ AFL +E+ + FI TT+ N + ++ SR + YL +
Sbjct: 113 -DEVHRF-NKSQQDAFLPHIED--GTITFIGATTE--NPSFELNSALLSRARVYLLKSLS 166
Query: 637 DGDIVARLR-------KISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---- 685
DI L + +++ + + IA +G R A L+ ++ +
Sbjct: 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDD 226
Query: 686 ---KRITSSLVNELVG 698
+ + L+ E+ G
Sbjct: 227 SGKRVLKPELLTEIAG 242
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1268 | ||||
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 3e-53 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 2e-34 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 4e-32 | |
| d1sxjd2 | 237 | c.37.1.20 (D:26-262) Replication factor C2 {Baker' | 7e-32 | |
| d1sxjb2 | 224 | c.37.1.20 (B:7-230) Replication factor C4 {Baker's | 1e-30 | |
| d1sxjc2 | 227 | c.37.1.20 (C:12-238) Replication factor C3 {Baker' | 2e-27 | |
| d2gnoa2 | 198 | c.37.1.20 (A:11-208) gamma subunit of DNA polymera | 2e-26 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 7e-25 | |
| d1a5ta2 | 207 | c.37.1.20 (A:1-207) delta prime subunit of DNA pol | 4e-24 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 7e-23 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 7e-22 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 1e-17 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 1e-10 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 5e-08 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 3e-05 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 0.001 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 0.004 |
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 184 bits (467), Expect = 3e-53
Identities = 88/239 (36%), Positives = 139/239 (58%), Gaps = 3/239 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 61
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 62 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ--YAPARGRFKVY 119
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 120 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 179
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVG 698
+L I EE++ EP AL L+A A+GSLRDA ++ DQ G ++++ V+ ++G
Sbjct: 180 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 238
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 130 bits (326), Expect = 2e-34
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 20/237 (8%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ +KY+P D+++GQ +V+ L + + G + P LF GP G GKT+ A + L
Sbjct: 12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSM-PHLLFAGPPGVGKTTAALALARELF 70
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
NF+E++ ++++G++ +R +K + P FK
Sbjct: 71 G-------------------ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFK 111
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+ +DE L A + +E V FI + IQSRC + F ++D
Sbjct: 112 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 171
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
DI RLR I+ E L + + L I A+G +R A +L + L K+IT V
Sbjct: 172 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFM 228
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 124 bits (310), Expect = 4e-32
Identities = 46/251 (18%), Positives = 89/251 (35%), Gaps = 17/251 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
KY+P + L + L + + R P L GP GTGK + ++
Sbjct: 3 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 62
Query: 523 DQTK--------PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH-------LS 567
+ K E N S D N + + +
Sbjct: 63 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 122
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
+ R+K +I+E + L A + +E+ + + I + + + I+S+C
Sbjct: 123 DSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC 182
Query: 628 QKYLFNKIKDGDIVARLRKISAEENLNVE-PDALDLIALNADGSLRDAETMLDQLSLLGK 686
D +I L + E + +E D L IA ++G+LR + ML+ ++L +
Sbjct: 183 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNE 242
Query: 687 RITSSLVNELV 697
+ + ++
Sbjct: 243 -LALKSSSPII 252
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 122 bits (307), Expect = 7e-32
Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 15/245 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+KY+P DE+ Q+ V L T+ + P LF GP GTGKTST + L
Sbjct: 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANL-PHMLFYGPPGTGKTSTILALTKELYG- 59
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ ++ + + K R+ P +K+
Sbjct: 60 -------PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKII 112
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E F I + + + S+C K+ F + +
Sbjct: 113 ILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNA 172
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL------GKRITSSLVN 694
+ RLR IS +EN+ + L+ I + G LR T+L S GK ITS+ V
Sbjct: 173 IDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVE 232
Query: 695 ELVGV 699
EL GV
Sbjct: 233 ELAGV 237
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 118 bits (297), Expect = 1e-30
Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 19/238 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+KY+P +++G + L G + P + G G GKT++ + L
Sbjct: 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNM-PHMIISGMPGIGKTTSVHCLAHELLG- 62
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
Y + + R V I L + K+
Sbjct: 63 -------RSYADGVLELNASDDRGIDVVR----------NQIKHFAQKKLHLPPGKHKIV 105
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E F F + + +QS+C ++K+ D D+
Sbjct: 106 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDV 165
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ RL +I E++ D L+ I A+G +R A L + + V ++V
Sbjct: 166 LKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVD 223
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (273), Expect = 2e-27
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+KY+P DE+ GQN V+ ++ + G++ P LF GP GTGKTST + +
Sbjct: 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKL-PHLLFYGPPGTGKTSTIVALAREIYGK 62
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
S +E++ ++ +G+D VR +K ++ S FK+
Sbjct: 63 -------------------NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLI 103
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E + F + + ++ S+C ++ F + I
Sbjct: 104 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 163
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-----GKRITSSLVNE 695
R+ + E L + P+A + ++G +R +L I+ ++ E
Sbjct: 164 ERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYE 223
Query: 696 LVG 698
G
Sbjct: 224 CCG 226
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 2e-26
Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 30/217 (13%)
Query: 480 VQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539
+++L I + L G + + +
Sbjct: 3 LETLKRIIEKSEG-ISILINGEDLSYPREVSLELPEYVEK------------------FP 43
Query: 540 GKSRNFMEVDGTNKK-GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLK 598
K+ + +E+D + G+D +R I L+ K ++ +C + + AFLK
Sbjct: 44 PKASDVLEIDPEGENIGIDDIRTIKDFLN--YSPELYTRKYVIVHDCERMTQQAANAFLK 101
Query: 599 FLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKIS-------AEE 651
LEEPP+ V + T + +I+SR + + N K+ + + + E
Sbjct: 102 ALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLER 161
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688
+ +A L A G L ++ +L+ LL K +
Sbjct: 162 DFKTALEAYKLGAEKLSG-LMESLKVLETEKLLKKVL 197
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (255), Expect = 7e-25
Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 30/258 (11%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTIS----------------RGRIAPVYLFQGPRGTGKT 507
KY P ++ G V L N ++ + + GP G GKT
Sbjct: 7 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 66
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
+ A + + L D + ++ +N ++ + +
Sbjct: 67 TAAHLVAQELGY---DILEQNASDVRSKTLLNAGVKNALD---------NMSVVGYFKHN 114
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN--VPRSIQS 625
+ + + V ++DE + + + + + + + N R
Sbjct: 115 EEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDR 174
Query: 626 RCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG 685
C F + I +RL I+ E ++P+ +D + G +R +L +S
Sbjct: 175 VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTT 234
Query: 686 KRITSSLVNELVGVVSEE 703
K I +NE+ +
Sbjct: 235 KTINHENINEISKAWEKN 252
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 99.8 bits (247), Expect = 4e-24
Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 6/204 (2%)
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
+ LV + GR L Q G G + S L C K CG+CR C
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 536 DFISGKSRNFMEVDG-TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWL 594
+G ++ + K L + KV + + LL
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN 654
A LK LEEPP F T + + + +++SRC+ + + V L +
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVT 181
Query: 655 VEPDALDLIALNADGSLRDAETML 678
+ DAL + GS A +
Sbjct: 182 MSQDALLAALRLSAGSPGAALALF 205
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 96.6 bits (239), Expect = 7e-23
Identities = 44/255 (17%), Positives = 91/255 (35%), Gaps = 28/255 (10%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
Q +P DE IGQ V + L + RG + L GP G GKT+ A I ++ L
Sbjct: 1 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA-SPRF 577
+ + K + + + ++G + L+ +
Sbjct: 61 T----------NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAI 110
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+ F ID K + Q + TT + ++SR L
Sbjct: 111 EDFQIDIMIGK-----GPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYT 165
Query: 638 GDIVAR-LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ +++ ++ ++ +E A ++IA + G+ R A + ++ + L
Sbjct: 166 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM-------LTVVK 218
Query: 697 VGVVSEEKLLELLEL 711
++ + +L+ +E+
Sbjct: 219 ADRINTDIVLKTMEV 233
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 93.9 bits (232), Expect = 7e-22
Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 37/256 (14%)
Query: 467 PIFFDELIGQNIVVQSLVNTI----SRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC--- 519
P DE IGQ + Q L + +R L GP G GKT+ A + + L
Sbjct: 5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 64
Query: 520 ---VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+ N G E+ +++ + + ++
Sbjct: 65 VTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAME------------ 112
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FV+D + + R I TT + + SR +
Sbjct: 113 --DFVMDIVIGQ-----GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 165
Query: 637 DGDIVARLR-KISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
+ +A+ + + + + +A I + G++R A+ + ++ +
Sbjct: 166 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGE----- 220
Query: 696 LVGVVSEEKLLELLEL 711
V++ E+ LE L
Sbjct: 221 --EVITRERALEALAA 234
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 82.9 bits (203), Expect = 1e-17
Identities = 41/277 (14%), Positives = 86/277 (31%), Gaps = 34/277 (12%)
Query: 453 GVLENIRSLSQKYKPIFFDELIGQ-NIVVQSLVNTISRGR----IAPVYLFQGPRGTGKT 507
G+ ++ R + Y P G+ + + +N + G + +Y G G GKT
Sbjct: 1 GLFKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKT 60
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF--------MEVDGTNKKGLDRV 559
+ AK ++ A + + LD +
Sbjct: 61 TLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDIL 120
Query: 560 RYILK-HLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ-----RVVFIFIT 613
+ ++ + + + ++ L+ EE P R+ F+ +
Sbjct: 121 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVA 180
Query: 614 TDID-------NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN--VEPDALDLIA 664
+D+ +P+ K K ++ L + + + EP L+LI+
Sbjct: 181 SDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 240
Query: 665 ------LNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
DGS R A L + + + ++E
Sbjct: 241 DVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSE 277
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 31/266 (11%), Positives = 62/266 (23%), Gaps = 28/266 (10%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISR-----GRIAPVYLFQGPRGTGKTS 508
++ + S Y P L + +Q L + G P G GTGKT
Sbjct: 2 IVVDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTV 58
Query: 509 TAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA 568
T + T +F + ++ + L L
Sbjct: 59 TLRKLWELYKD-KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVE 117
Query: 569 GLPSASPRFKVFV--IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
L + + T++ + ++ + + I D V ++
Sbjct: 118 HLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 177
Query: 627 C------QKYLFNKIKDGDIVARLRKISAEENLNVEPD-----------ALDLIALNADG 669
F+ I L + G
Sbjct: 178 TRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG 237
Query: 670 SLRDAETMLDQLSLLGKRITSSLVNE 695
R A +L + + ++ +
Sbjct: 238 DARLAIDILYRSAYAAQQNGRKHIAP 263
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 54.3 bits (130), Expect = 5e-08
Identities = 28/255 (10%), Positives = 64/255 (25%), Gaps = 36/255 (14%)
Query: 447 NGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGK 506
+ EE + + L K + +D L + +V I + R +LF+GP +GK
Sbjct: 118 DIEEWMAGVAWLHCLLPKMDSVVYDFL-------KCMVYNIPKKRY---WLFKGPIDSGK 167
Query: 507 TSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
T+ A ++ +D+ + + +
Sbjct: 168 TTLAAALLELCGG----------------KALNVNLPLDRLN-FELGVAIDQFLVVFEDV 210
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVV------FIFITTDID-NV 619
+ I+ L + LE+ I +
Sbjct: 211 KGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPK 270
Query: 620 PRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLD 679
+ Q K + R + + + L ++ + + +
Sbjct: 271 TLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVA--EFAQSIQ 328
Query: 680 QLSLLGKRITSSLVN 694
+ K +
Sbjct: 329 SRIVEWKERLDKEFS 343
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.1 bits (103), Expect = 3e-05
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 1/108 (0%)
Query: 497 LFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE-CNDFISGKSRNFMEVDGTNKKG 555
P G+GKT A L+ + E G K+
Sbjct: 89 CIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKEL 148
Query: 556 LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603
RF + + DE H LP+++++ + P
Sbjct: 149 KPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAP 196
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 39.9 bits (92), Expect = 0.001
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 466 KPIF-FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+P+F F ++GQ + +L+ T I V L G RGTGK++ + +A L
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGV-LVFGDRGTGKSTAVRALAALL 52
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 38.0 bits (87), Expect = 0.004
Identities = 39/270 (14%), Positives = 75/270 (27%), Gaps = 46/270 (17%)
Query: 470 FDELIGQNIVVQSLVNTISRGRIAPV--YLFQGPRGTGKTSTAKIFSAALNCVATDQTKP 527
++ + LV P+ L +GP +GKT+ A + N P
Sbjct: 18 VTRVLDD---GELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP 74
Query: 528 CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHL 587
+ + + ++ + L V +
Sbjct: 75 DKMIGFSETAKCQAMKKIFDDAYKS----QLSCVVVDDIERLLD------YVPIGPRFSN 124
Query: 588 LPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKI 647
L + L LK ++++ I T+ D + I +I + +
Sbjct: 125 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNA---FSTTIHVPNIATGEQLL 181
Query: 648 SA-EENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLL 706
A E N + IA G + +KLL
Sbjct: 182 EALELLGNFKDKERTTIAQQVKGKKVW--------------------------IGIKKLL 215
Query: 707 ELLELAMSSDTAETVKRARELMDS-GVDPM 735
L+E+++ D V++ L+ G P+
Sbjct: 216 MLIEMSLQMDPEYRVRKFLALLREEGASPL 245
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1268 | |||
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 100.0 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 100.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 100.0 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 100.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.98 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.97 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.97 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.95 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.95 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.94 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.82 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.82 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.71 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.69 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.67 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.66 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.64 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.58 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.55 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.54 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.53 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.51 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.48 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.46 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.41 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.17 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.13 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.09 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.9 | |
| d1jr3a1 | 126 | gamma subunit {Escherichia coli [TaxId: 562]} | 98.7 | |
| d1jr3d1 | 127 | delta subunit {Escherichia coli [TaxId: 562]} | 98.57 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 98.25 | |
| d1jqlb_ | 140 | delta subunit of DNA polymerase III, N-domain {Esc | 98.05 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.99 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.79 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.55 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.45 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 97.02 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.81 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.7 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.67 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.64 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.61 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.59 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.59 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 96.54 | |
| d1sxjd1 | 91 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.54 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.52 | |
| d1iqpa1 | 95 | Replication factor C {Archaeon Pyrococcus furiosus | 96.36 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.2 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.13 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 95.84 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.65 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.49 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.48 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.4 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.26 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.23 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.17 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.77 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.61 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.52 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.37 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.33 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.17 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.12 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.96 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.96 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 93.78 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 93.78 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.74 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.69 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.66 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.64 | |
| d1sxjc1 | 95 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.51 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.48 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.09 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.01 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 92.91 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.61 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.44 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.22 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.96 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 91.94 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.49 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.43 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.32 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.21 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.02 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.02 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.76 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.51 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 90.26 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.94 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.79 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.79 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.62 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 89.31 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 88.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 87.67 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 87.58 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 87.49 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.4 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 87.04 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 86.65 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.55 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 86.44 | |
| d1sxjb1 | 92 | Replication factor C4 {Baker's yeast (Saccharomyce | 86.04 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.66 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 85.49 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.59 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 84.47 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 84.42 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.35 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 84.17 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 84.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 83.48 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 83.19 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.17 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.8 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 82.49 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 81.76 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 81.72 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 81.47 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 81.17 |
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-38 Score=305.87 Aligned_cols=237 Identities=37% Similarity=0.675 Sum_probs=225.5
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24642089987634684999999999998199997299995798419999999999960226889998887655432235
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 460 ~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~ 539 (1268)
.|++||||++|+|++||+.+++.|.+++..++++|++|||||+|+|||++|+++++.+++.......+|+.|..|..+..
T Consensus 1 ~~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 80 (239)
T d1njfa_ 1 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 80 (239)
T ss_dssp CHHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHH
T ss_pred CCHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 95143288989881595999999999998599870598888998758999999999846855666675554247999974
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 99852799908887486899999999980899999984799995899989798999999870799958999971899996
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV 619 (1268)
Q Consensus 540 G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ekL 619 (1268)
+.+.+++++++++..+++.++.+++.+...+ ..+.++|+||||+|.|+..++++|+++||+++.+++||++|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~--~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 81 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp TCCTTEEEEETTCSSSHHHHHHHHHSCCCSC--SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCCCEEEEECCHHCCCHHHHHHHHHHHHHCC--CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 7987079961120078999999999997465--25998799997811089999999999985689886999973885636
Q ss_pred CHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCHHHHHHHHC
Q ss_conf 56654152399960799789999999999853999999999999997399999999999999971-78669999999851
Q 000818 620 PRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVG 698 (1268)
Q Consensus 620 ~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsll-gk~IT~edV~eLVG 698 (1268)
.++|+|||+.+.|.+++.+++..++..++..|++.+++++++.|+..++||+|.|+++|+++... .+.|+.++|.+++|
T Consensus 159 ~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~~~~I~~~~v~~~lg 238 (239)
T d1njfa_ 159 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 238 (239)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTTSBCHHHHHHHHT
T ss_pred CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 76576121022224676787666887877643147899999999997699799999999999984799858999999868
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-33 Score=264.77 Aligned_cols=220 Identities=21% Similarity=0.389 Sum_probs=200.2
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12464208998763468499999999999819999729999579841999999999996022688999888765543223
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~ 538 (1268)
.+|++||||++|+|+|||+.+++.|.+++..+++ +++|||||+|+|||++|+++|+++.|...
T Consensus 3 ~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~-~~~ll~Gp~G~GKTt~a~~la~~l~~~~~---------------- 65 (224)
T d1sxjb2 3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNM-PHMIISGMPGIGKTTSVHCLAHELLGRSY---------------- 65 (224)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGH----------------
T ss_pred CCHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHHHHHHCCCC----------------
T ss_conf 8357673889899902979999999999986998-74999889998705469999999725664----------------
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 59985279990888748689999999998089-99999847999958999897989999998707999589999718999
Q 000818 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 539 ~G~s~dvIEIDaSs~~GID~IreLIEev~~~p-~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~e 617 (1268)
..+++++++++.+++..+...+..+.... ......++|+||||+|.+....+++|++.+++++..++||++++...
T Consensus 66 ---~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 66 ---ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 142 (224)
T ss_dssp ---HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred ---CCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHH
T ss_conf ---32211111345578521166788788762247776359999824432321577877520112333336653147430
Q ss_pred CCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 96566541523999607997899999999998539999999999999973999999999999999717866999999985
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697 (1268)
Q Consensus 618 kL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~IT~edV~eLV 697 (1268)
+++++|++||+.|.|.+++.+++..+|..++.+|++.+++++++.|+..++||+|.|++.||.+....+.||.+.|.+++
T Consensus 143 ~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~~~i~~~~i~~~~ 222 (224)
T d1sxjb2 143 KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIV 222 (224)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 21067887777765313322456788877777404678999999999986996999999999999769984899999986
Q ss_pred C
Q ss_conf 1
Q 000818 698 G 698 (1268)
Q Consensus 698 G 698 (1268)
.
T Consensus 223 d 223 (224)
T d1sxjb2 223 D 223 (224)
T ss_dssp T
T ss_pred C
T ss_conf 8
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-33 Score=263.16 Aligned_cols=221 Identities=24% Similarity=0.431 Sum_probs=199.3
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12464208998763468499999999999819999729999579841999999999996022688999888765543223
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~ 538 (1268)
.+|++||||++|+|+|||+++++.|.+++..+++ +++|||||+|+|||++|+++|+++.+...
T Consensus 2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~-~~lLl~Gp~G~GKttl~~~la~~l~~~~~---------------- 64 (227)
T d1sxjc2 2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKL-PHLLFYGPPGTGKTSTIVALAREIYGKNY---------------- 64 (227)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCC-CCEEEECSSSSSHHHHHHHHHHHHHTTSH----------------
T ss_pred CCHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCC----------------
T ss_conf 7554545889999835969999999999976999-85999889987755899999998516777----------------
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 59985279990888748689999999998089999998479999589998979899999987079995899997189999
Q 000818 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 539 ~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ek 618 (1268)
...+++++.++..+++.....+.............++|+||||++.+....+++|++.|++++..++||++++...+
T Consensus 65 ---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 65 ---SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp ---HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred ---CCEEEEECCCCCCCEEEEECCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
T ss_conf ---64157731555687543210001011100025777189999663200023789999886311200232012670877
Q ss_pred CCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----CCCCCHHHH
Q ss_conf 656654152399960799789999999999853999999999999997399999999999999971-----786699999
Q 000818 619 VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-----GKRITSSLV 693 (1268)
Q Consensus 619 L~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsll-----gk~IT~edV 693 (1268)
+++++++||..+.|.+++..++..+|..++.+|++.+++++++.|++.++||+|.|++.||.+... ...||.++|
T Consensus 142 i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v 221 (227)
T d1sxjc2 142 LTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 221 (227)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEECHHHH
T ss_conf 59999988754012356520001102122111124589899999999849969999999999998557888882289999
Q ss_pred HHHHCC
Q ss_conf 998513
Q 000818 694 NELVGV 699 (1268)
Q Consensus 694 ~eLVG~ 699 (1268)
.+++|.
T Consensus 222 ~e~~g~ 227 (227)
T d1sxjc2 222 YECCGA 227 (227)
T ss_dssp HHHTTC
T ss_pred HHHHCC
T ss_conf 997682
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-32 Score=258.95 Aligned_cols=220 Identities=29% Similarity=0.495 Sum_probs=200.3
Q ss_pred CHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 01246420899876346849999999999981999972999957984199999999999602268899988876554322
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i 537 (1268)
.++|++||+|++|+||+||+.+++.|.+++..+++ +++||+||+|+|||++|+++|++++|...
T Consensus 11 ~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~-~~lll~Gp~G~GKTtla~~iak~l~~~~~--------------- 74 (231)
T d1iqpa2 11 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSM-PHLLFAGPPGVGKTTAALALARELFGENW--------------- 74 (231)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred HCHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCC---------------
T ss_conf 24378975899899913939999999999985999-76999789997487999999999873146---------------
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 35998527999088874868999999999808999999847999958999897989999998707999589999718999
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 538 ~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~e 617 (1268)
..+++++++++.++++.++................++|++|||++.+....+++|++++++++.+++||++++...
T Consensus 75 ----~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~ 150 (231)
T d1iqpa2 75 ----RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 150 (231)
T ss_dssp ----HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCCCCEEEEECCCCHH
T ss_conf ----7771587567666634888888888751001578722886143443121478987641124776447886148766
Q ss_pred CCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 96566541523999607997899999999998539999999999999973999999999999999717866999999985
Q 000818 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697 (1268)
Q Consensus 618 kL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~IT~edV~eLV 697 (1268)
++++++++||..+.|.++...++..+|..++.++++.+++++++.|++.++||+|.|++.|+.+....+.||.++|.++.
T Consensus 151 ~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~~~it~e~v~~v~ 230 (231)
T d1iqpa2 151 KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVA 230 (231)
T ss_dssp GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHT
T ss_pred HCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 56576847312101233430467789988899839998999999999983997999999999999849995899987652
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.4e-30 Score=244.69 Aligned_cols=221 Identities=29% Similarity=0.459 Sum_probs=192.7
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24642089987634684999999999998199997299995798419999999999960226889998887655432235
Q 000818 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 460 ~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~ 539 (1268)
||++||||.+|+||+||+++++.|.+++..+++ +++||+||+|+|||++++++++++.+....
T Consensus 1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~-~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~---------------- 63 (237)
T d1sxjd2 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANL-PHMLFYGPPGTGKTSTILALTKELYGPDLM---------------- 63 (237)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHH----------------
T ss_pred CCCHHHCCCCHHHCCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCC----------------
T ss_conf 901320889788726939999999999986998-859998999998499999999997097633----------------
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCC----------CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 998527999088874868999999999808999----------9998479999589998979899999987079995899
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS----------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVF 609 (1268)
Q Consensus 540 G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~----------~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVL 609 (1268)
....++++.....+++.+...+......... ....++|+||||++.++...++.|++.++.++...+|
T Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~ 141 (237)
T d1sxjd2 64 --KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRF 141 (237)
T ss_dssp --TTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEE
T ss_pred --CCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf --432122002113560678999988765444324678776135667369999551336777788876301222233332
Q ss_pred EEEECCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----
Q ss_conf 997189999656654152399960799789999999999853999999999999997399999999999999971-----
Q 000818 610 IFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL----- 684 (1268)
Q Consensus 610 ILaTte~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsll----- 684 (1268)
|++++...++++++++||+.|.|.+++..++..+|..++.++++.+++++++.|+..++||+|.|++.|+.++..
T Consensus 142 i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~ 221 (237)
T d1sxjd2 142 CLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLG 221 (237)
T ss_dssp EEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCC
T ss_conf 12246642223311100011023333332110010114555267578999999999859989999999999997363127
Q ss_pred -CCCCCHHHHHHHHCC
Q ss_conf -786699999998513
Q 000818 685 -GKRITSSLVNELVGV 699 (1268)
Q Consensus 685 -gk~IT~edV~eLVG~ 699 (1268)
++.||.++|.+++|.
T Consensus 222 ~~~~It~~~i~e~~g~ 237 (237)
T d1sxjd2 222 DGKNITSTQVEELAGV 237 (237)
T ss_dssp SCCCCCHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHCC
T ss_conf 8884589999985295
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.5e-30 Score=240.23 Aligned_cols=198 Identities=24% Similarity=0.340 Sum_probs=183.8
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC--
Q ss_conf 849999999999981999972999957984199999999999602268899988876554322359985279990888--
Q 000818 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-- 552 (1268)
Q Consensus 475 GQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs-- 552 (1268)
.|+.+.+.|.+.+..++++|+|||+||+|+|||++|+.+|+.++|.......+|+.|.+|..+..+.+.+++.+....
T Consensus 6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (207)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCC
T ss_conf 21999999999998599673798889998759999999998210101232122334201556543034311012343134
Q ss_pred -CCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHCCEEEEE
Q ss_conf -7486899999999980899999984799995899989798999999870799958999971899996566541523999
Q 000818 553 -KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631 (1268)
Q Consensus 553 -~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ekL~paL~SRcqvI~ 631 (1268)
...++.++++++.+...+ ..+.+|||||||+|.|+..++++|+++||+||.+++|||+|+++.+++++|+|||+.|.
T Consensus 86 ~~i~~~~ir~l~~~~~~~~--~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~ 163 (207)
T d1a5ta2 86 NTLGVDAVREVTEKLNEHA--RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHY 163 (207)
T ss_dssp SSBCHHHHHHHHHHTTSCC--TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHCC--CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCEEEEEE
T ss_conf 5333211467765321100--35764047731344200001499999998501111045530686551032002157882
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 607997899999999998539999999999999973999999999999
Q 000818 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLD 679 (1268)
Q Consensus 632 F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLE 679 (1268)
|.+++.+++..+|.+ .+.++++++..+++.++|++|.|+++||
T Consensus 164 ~~~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 164 LAPPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHH-----CCCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 689999999999997-----4899999999999976999999999857
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.6e-28 Score=227.55 Aligned_cols=226 Identities=19% Similarity=0.283 Sum_probs=175.2
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCC---CC
Q ss_conf 46420899876346849999999999981999972999957984199999999999602268899--98887655---43
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQT--KPCGYCRE---CN 535 (1268)
Q Consensus 461 L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~--~PCg~C~s---C~ 535 (1268)
|++||||++|+|++||+.+++.|.+++..++..+++|||||+|+|||++|+++|+.+.+...... ..+..+.. ..
T Consensus 1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
T d1sxje2 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 80 (252)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred CCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98353889798835839999999999976998785998899999889999999976227642222212344434666311
Q ss_pred CCCCCCCCCEEEECCCCC--CCHHHHHHHHHHHHCCC--------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 223599852799908887--48689999999998089--------99999847999958999897989999998707999
Q 000818 536 DFISGKSRNFMEVDGTNK--KGLDRVRYILKHLSAGL--------PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs~--~GID~IreLIEev~~~p--------~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~ 605 (1268)
.+..........+..... .....+...+....... ......+++++|||+|.++...++.|++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~ 160 (252)
T d1sxje2 81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 160 (252)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 22110477631000010445775224310223434331001211466678724999424333454311122100221356
Q ss_pred CEEEEEEECCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 589999718999965665415239996079978999999999985399999-9999999997399999999999999971
Q 000818 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE-PDALDLIALNADGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 606 ~VVLILaTte~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~Id-eeALelLA~~S~GdLRdAlnlLEkLsll 684 (1268)
+++||++|++.++++++|++||+.|.|++++.+++..+|..++.+|++.++ +++++.|+..+.||+|.|++.||.++..
T Consensus 161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240 (252)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred CCCCEEEECCCCCHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 64300010211100254421000243035330468999999999839998969999999998699499999999999975
Q ss_pred CC
Q ss_conf 78
Q 000818 685 GK 686 (1268)
Q Consensus 685 gk 686 (1268)
++
T Consensus 241 ~~ 242 (252)
T d1sxje2 241 NE 242 (252)
T ss_dssp TT
T ss_pred CC
T ss_conf 99
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2.8e-25 Score=204.66 Aligned_cols=203 Identities=23% Similarity=0.288 Sum_probs=173.6
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHH----CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2089987634684999999999998----199997299995798419999999999960226889998887655432235
Q 000818 464 KYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 464 KyRP~tFdDLVGQe~vvqtL~naIk----~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~ 539 (1268)
-.||++|+|+|||+++++.|..++. .++..+++|||||||||||++|+++|+++
T Consensus 2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~---------------------- 59 (238)
T d1in4a2 2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---------------------- 59 (238)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------------------
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC----------------------
T ss_conf 9798929990895999999999999788538877748987999973889999998503----------------------
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC----------------
Q ss_conf 9985279990888748689999999998089999998479999589998979899999987079----------------
Q 000818 540 GKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP---------------- 603 (1268)
Q Consensus 540 G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep---------------- 603 (1268)
..+++++++.......++..++.. .....+++|||++.+....++.|+..++..
T Consensus 60 --~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (238)
T d1in4a2 60 --QTNIHVTSGPVLVKQGDMAAILTS--------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 129 (238)
T ss_dssp --TCCEEEEETTTCCSHHHHHHHHHH--------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------------
T ss_pred --CCCCCCCCCCCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC
T ss_conf --888533257442248889999875--------4358824777898840677764214024414544543760024444
Q ss_pred --CCCEEEEEEECCCCCCCHHHHCCEEE-EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf --99589999718999965665415239-996079978999999999985399999999999999739999999999999
Q 000818 604 --PQRVVFIFITTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680 (1268)
Q Consensus 604 --p~~VVLILaTte~ekL~paL~SRcqv-I~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEk 680 (1268)
..+++||++|+....+++++++||.. +.|.+++..++..++..++..+++.++++++..++..++|++|.|++.|+.
T Consensus 130 ~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~~ 209 (238)
T d1in4a2 130 IDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKR 209 (238)
T ss_dssp ---CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 57887699995478755554311330079984478778777777776530110025799999999679989999999999
Q ss_pred HHHH-----CCCCCHHHHHHHHC
Q ss_conf 9971-----78669999999851
Q 000818 681 LSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 681 Lsll-----gk~IT~edV~eLVG 698 (1268)
+... ...||.+.+.+++.
T Consensus 210 ~~~~~~~~~~~~it~~~~~~al~ 232 (238)
T d1in4a2 210 VRDMLTVVKADRINTDIVLKTME 232 (238)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999985699628999999988
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.9e-26 Score=211.15 Aligned_cols=215 Identities=19% Similarity=0.325 Sum_probs=169.9
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC----------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1246420899876346849999999999981----------------999972999957984199999999999602268
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISR----------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~----------------gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~ 522 (1268)
..|++||||++|+||+|++.+++.|.+++.. ....+++|||||||||||++|+++|+++
T Consensus 2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~----- 76 (253)
T d1sxja2 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----- 76 (253)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----
T ss_pred CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-----
T ss_conf 756537689999996698999999999999625300234323202578887449998799998889999999998-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC------------CCCCCCCEEEEEECCCCCCH
Q ss_conf 899988876554322359985279990888748689999999998089------------99999847999958999897
Q 000818 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL------------PSASPRFKVFVIDECHLLPS 590 (1268)
Q Consensus 523 e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p------------~~~~s~~KVIIIDEid~LS~ 590 (1268)
..+++++++++......++..++.+.... ......+.++++||++.+..
T Consensus 77 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~ 137 (253)
T d1sxja2 77 -------------------GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 137 (253)
T ss_dssp -------------------TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred -------------------HHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
T ss_conf -------------------7512013443221168899999887631212101334320145566513777630111110
Q ss_pred HHHHHH---HHHHCCCCCCEEEEEEECC-CCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 989999---9987079995899997189-999656654152399960799789999999999853999999999999997
Q 000818 591 KTWLAF---LKFLEEPPQRVVFIFITTD-IDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666 (1268)
Q Consensus 591 ~a~naL---LK~LEepp~~VVLILaTte-~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~ 666 (1268)
.....+ ....+.... .+|++++. ....+..+++||..|.|.+++..++..+|..++.+|++.+++++++.|+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~--~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~ 215 (253)
T d1sxja2 138 GDRGGVGQLAQFCRKTST--PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 215 (253)
T ss_dssp TSTTHHHHHHHHHHHCSS--CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 001346777654012342--221113555521135324403653114531467889999999980999999999999996
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 399999999999999971786699999998513
Q 000818 667 ADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699 (1268)
Q Consensus 667 S~GdLRdAlnlLEkLsllgk~IT~edV~eLVG~ 699 (1268)
++||+|.|++.|+.+....+.|+.+.|.++...
T Consensus 216 s~GDiR~ai~~L~~~~~~~~~i~~~~~~~~~~~ 248 (253)
T d1sxja2 216 TRGDIRQVINLLSTISTTTKTINHENINEISKA 248 (253)
T ss_dssp TTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCH
T ss_conf 797099999999999975998899999999650
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.8e-24 Score=197.10 Aligned_cols=204 Identities=19% Similarity=0.190 Sum_probs=168.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHC----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899876346849999999999981----999972999957984199999999999602268899988876554322359
Q 000818 465 YKPIFFDELIGQNIVVQSLVNTISR----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540 (1268)
Q Consensus 465 yRP~tFdDLVGQe~vvqtL~naIk~----gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G 540 (1268)
.||++|+|+|||+++++.|..++.. +...+++|||||||||||++|+++|+.+
T Consensus 3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~----------------------- 59 (239)
T d1ixsb2 3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------------------- 59 (239)
T ss_dssp CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHH-----------------------
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH-----------------------
T ss_conf 697988894898999999999999787358888738988979987888999999984-----------------------
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-----------------
Q ss_conf 985279990888748689999999998089999998479999589998979899999987079-----------------
Q 000818 541 KSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP----------------- 603 (1268)
Q Consensus 541 ~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep----------------- 603 (1268)
..++.+++++...........+.. ......|++|||+|.+....+..|+..+++.
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~ 131 (239)
T d1ixsb2 60 -GVNLRVTSGPAIEKPGDLAAILAN-------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 131 (239)
T ss_dssp -TCCEEEEETTTCCSHHHHHHHHHT-------TCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEE
T ss_pred -CCCEEECCCCCCCCCHHHHHHHHH-------HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf -987475468753432146899885-------103887344311001104478750012433321211046556543346
Q ss_pred -CCCEEEEEEECCCCC-CCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf -995899997189999-656654152399960799789999999999853999999999999997399999999999999
Q 000818 604 -PQRVVFIFITTDIDN-VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL 681 (1268)
Q Consensus 604 -p~~VVLILaTte~ek-L~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkL 681 (1268)
+..++||++|++... .++.+.++|..+.|.+++.+++..++..++..+++.++.+++..++..+.|++|.|++.|+.+
T Consensus 132 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~~~ 211 (239)
T d1ixsb2 132 ELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRV 211 (239)
T ss_dssp ECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89977999630683334410101221456752057455557889999984876526789999997699999999999999
Q ss_pred HHH-----CCCCCHHHHHHHHCC
Q ss_conf 971-----786699999998513
Q 000818 682 SLL-----GKRITSSLVNELVGV 699 (1268)
Q Consensus 682 sll-----gk~IT~edV~eLVG~ 699 (1268)
..+ ...||.+.+.++++.
T Consensus 212 ~~~a~~~~~~~It~~~~~~~l~~ 234 (239)
T d1ixsb2 212 RDFAQVAGEEVITRERALEALAA 234 (239)
T ss_dssp HHHHTTSCCSCBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99989857997389999999863
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.7e-22 Score=183.69 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=142.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CCCHH
Q ss_conf 99999999981999972999957984199999999999602268899988876554322359985279990888-74868
Q 000818 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN-KKGLD 557 (1268)
Q Consensus 479 vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs-~~GID 557 (1268)
.++.|.+++..+. .++|||+||+|+|||++|..+++.+..... .++||+++.+.. ..+++
T Consensus 2 ~~~~l~~~i~~~~-~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~------------------~h~D~~~i~~~~~~I~Id 62 (198)
T d2gnoa2 2 QLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPP------------------KASDVLEIDPEGENIGID 62 (198)
T ss_dssp HHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCC------------------CTTTEEEECCSSSCBCHH
T ss_pred HHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCC------------------CCCCEEEEECCCCCCCHH
T ss_conf 7899999996699-855998898998889999999999843456------------------799889980776789989
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHCCEEEEEECCCCH
Q ss_conf 99999999980899999984799995899989798999999870799958999971899996566541523999607997
Q 000818 558 RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637 (1268)
Q Consensus 558 ~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ekL~paL~SRcqvI~F~pls~ 637 (1268)
++|++++.+...| ..+.+||+||||+|.|+..++|+||++||+||.+++||++|++++++++||+|||+.+.|.++..
T Consensus 63 ~IR~i~~~~~~~~--~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~ 140 (198)
T d2gnoa2 63 DIRTIKDFLNYSP--ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 140 (198)
T ss_dssp HHHHHHHHHTSCC--SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred HHHHHHHHHHHCC--CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHCHHHHHCCEEEEECCCCHH
T ss_conf 9999999996175--45898799994731036666647888773789885222206995668788735227776799368
Q ss_pred HHHHHHHHHH----HHH-----CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8999999999----985-----3999999999999997399999999999999971786
Q 000818 638 GDIVARLRKI----SAE-----ENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR 687 (1268)
Q Consensus 638 eELv~iL~ki----akk-----EGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~ 687 (1268)
...++... .+. .+.....+++..++....| ++++++.++...++++.
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ld~~~~l~kv 196 (198)
T d2gnoa2 141 --FRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSG-LMESLKVLETEKLLKKV 196 (198)
T ss_dssp --HHHHHHHHHTTHHHHCGGGGTCHHHHHHHHHHHHHHHHH-HHHHHHHSCHHHHTTTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_conf --899999999999999887762665779999999998618-99999999799999887
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.2e-18 Score=152.57 Aligned_cols=200 Identities=19% Similarity=0.252 Sum_probs=152.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9987634684999999999998-----------19999729999579841999999999996022688999888765543
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vvqtL~naIk-----------~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~ 535 (1268)
..+|+||+|.+.+.+.|.+.+. ..+.+..+|||||||||||++|+++|+++
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~------------------ 69 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------------------ 69 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------------------
T ss_pred CCCHHHHHCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHC------------------
T ss_conf 98999981639999999999999879999998699988867866899888228999999982------------------
Q ss_pred CCCCCCCCCEEEECCCCCC------CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHH
Q ss_conf 2235998527999088874------868999999999808999999847999958999897--------------98999
Q 000818 536 DFISGKSRNFMEVDGTNKK------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTWLA 595 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs~~------GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~--------------~a~na 595 (1268)
...++.+++++.. ....++.+++.+....| .|+||||+|.+.. ..++.
T Consensus 70 ------~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~P------~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ 137 (256)
T d1lv7a_ 70 ------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP------CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 137 (256)
T ss_dssp ------TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCS------EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHH
T ss_pred ------CCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHCCC------EEEEEECHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf ------998799886994260010789999999999997599------89999775665756789888874899999999
Q ss_pred HHHHHCC--CCCCEEEEEEECCCCCCCHHHHC--CEE-EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-
Q ss_conf 9998707--99958999971899996566541--523-99960799789999999999853999999999999997399-
Q 000818 596 FLKFLEE--PPQRVVFIFITTDIDNVPRSIQS--RCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG- 669 (1268)
Q Consensus 596 LLK~LEe--pp~~VVLILaTte~ekL~paL~S--Rcq-vI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~G- 669 (1268)
|+..++. ....+++|++||.++.+++++++ |+. .|.|.+|+.++...+++....+..+. .+..+..|++.+.|
T Consensus 138 ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~ 216 (256)
T d1lv7a_ 138 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGF 216 (256)
T ss_dssp HHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTC
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHCCCC
T ss_conf 9999538777799899980799310798576898787798779959999999999842599868-656999999868998
Q ss_pred CHHHHHHHHHHHHHH-----CCCCCHHHHHHHH
Q ss_conf 999999999999971-----7866999999985
Q 000818 670 SLRDAETMLDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 670 dLRdAlnlLEkLsll-----gk~IT~edV~eLV 697 (1268)
+.+++.++++.+.+. .+.|+.+++.+.+
T Consensus 217 s~adi~~l~~~A~~~a~~~~~~~i~~~d~~~Al 249 (256)
T d1lv7a_ 217 SGADLANLVNEAALFAARGNKRVVSMVEFEKAK 249 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999999999999998289834899999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=8e-19 Score=155.89 Aligned_cols=200 Identities=22% Similarity=0.278 Sum_probs=149.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9987634684999999999998-----------19999729999579841999999999996022688999888765543
Q 000818 467 PIFFDELIGQNIVVQSLVNTIS-----------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 467 P~tFdDLVGQe~vvqtL~naIk-----------~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~ 535 (1268)
+.+|+||+|.+.+++.|.+.+. ..+.+..+|||||||||||++|+++|+++
T Consensus 5 ~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~------------------ 66 (247)
T d1ixza_ 5 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------------------ 66 (247)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------------------
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC------------------
T ss_conf 97499971579999999999999879999997599988648876689888359999999873------------------
Q ss_pred CCCCCCCCCEEEECCCCC----CC--HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHH
Q ss_conf 223599852799908887----48--68999999999808999999847999958999897--------------98999
Q 000818 536 DFISGKSRNFMEVDGTNK----KG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------------KTWLA 595 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs~----~G--ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~--------------~a~na 595 (1268)
+..++.++++.. .| ...++.+++.+.... .-||||||+|.+.. ...+.
T Consensus 67 ------~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~------p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ 134 (247)
T d1ixza_ 67 ------RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA------PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 134 (247)
T ss_dssp ------TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSS------SEEEEEETHHHHHC---------CHHHHHHHHH
T ss_pred ------CCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCC------CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf ------99779978699646245389999999999999769------979999773664746789988875899999999
Q ss_pred HHHHHCC--CCCCEEEEEEECCCCCCCHHHHC--CEE-EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-
Q ss_conf 9998707--99958999971899996566541--523-99960799789999999999853999999999999997399-
Q 000818 596 FLKFLEE--PPQRVVFIFITTDIDNVPRSIQS--RCQ-KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG- 669 (1268)
Q Consensus 596 LLK~LEe--pp~~VVLILaTte~ekL~paL~S--Rcq-vI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~G- 669 (1268)
|+..|+. ....+++|++||.++.+++++++ |+. .|.|.+|+.++...+++..+.+.... .+..+..|++.+.|
T Consensus 135 ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 213 (247)
T d1ixza_ 135 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGF 213 (247)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTC
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCC
T ss_conf 9999638777899899980799400699675898785799979969999999999875065776-546899999778898
Q ss_pred CHHHHHHHHHHHHHH-----CCCCCHHHHHHHH
Q ss_conf 999999999999971-----7866999999985
Q 000818 670 SLRDAETMLDQLSLL-----GKRITSSLVNELV 697 (1268)
Q Consensus 670 dLRdAlnlLEkLsll-----gk~IT~edV~eLV 697 (1268)
..+++.+++..+.+. ...|+.+++.+++
T Consensus 214 s~~di~~lv~~A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 214 VGADLENLLNEAALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 899999999999999998688874999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=3.2e-16 Score=136.21 Aligned_cols=184 Identities=15% Similarity=0.222 Sum_probs=137.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHH------------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 987634684999999999998------------19999729999579841999999999996022688999888765543
Q 000818 468 IFFDELIGQNIVVQSLVNTIS------------RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 468 ~tFdDLVGQe~vvqtL~naIk------------~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~ 535 (1268)
.+|+||+|.+.+++.|...|. ...++..+|||||||||||++++++|.++
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~------------------ 62 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------------------ 62 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT------------------
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH------------------
T ss_conf 97666310999999999999988319999986799988646876699888308999999874------------------
Q ss_pred CCCCCCCCCEEEECCCC----CC--CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH-----------HHHHHHH
Q ss_conf 22359985279990888----74--8689999999998089999998479999589998979-----------8999999
Q 000818 536 DFISGKSRNFMEVDGTN----KK--GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK-----------TWLAFLK 598 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs----~~--GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~-----------a~naLLK 598 (1268)
...++.++++. .. ....++.+++.+.... ..|+||||+|.+... ....++.
T Consensus 63 ------~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~------p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~ 130 (258)
T d1e32a2 63 ------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA------PAIIFIDELDAIAPKREKTHGEVERRIVSQLLT 130 (258)
T ss_dssp ------TCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTC------SEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHH
T ss_pred ------CCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHCC------CEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCC
T ss_conf ------88379997304302545617888899999998649------949985211132257887777068999877500
Q ss_pred HHC--CCCCCEEEEEEECCCCCCCHHHHC--CEEE-EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-CHH
Q ss_conf 870--799958999971899996566541--5239-9960799789999999999853999999999999997399-999
Q 000818 599 FLE--EPPQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADG-SLR 672 (1268)
Q Consensus 599 ~LE--epp~~VVLILaTte~ekL~paL~S--Rcqv-I~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~G-dLR 672 (1268)
.++ .....+++|++||.++.+++++++ |+.. |.|..|+.++...+|+..+.+..+. ++..+..|++.+.| +.+
T Consensus 131 ~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~a 209 (258)
T d1e32a2 131 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGA 209 (258)
T ss_dssp HHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCCHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCC-CCCCHHHHHHCCCCCCHH
T ss_conf 1101234688117975799310252454246302323789999889998732204576334-553034444206677899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 000818 673 DAETMLDQLS 682 (1268)
Q Consensus 673 dAlnlLEkLs 682 (1268)
++.++++.+.
T Consensus 210 dl~~lv~~A~ 219 (258)
T d1e32a2 210 DLAALCSEAA 219 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.71 E-value=1.6e-15 Score=131.04 Aligned_cols=214 Identities=20% Similarity=0.225 Sum_probs=155.0
Q ss_pred HCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC-----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 101246420899876346849999999999981-----999972999957984199999999999602268899988876
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISR-----GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531 (1268)
Q Consensus 457 ~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~-----gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C 531 (1268)
+..+|...|+|.+ ++|++..++.+..+|.. +..++++||+||+|||||++++.+++.+.+...
T Consensus 5 ~~~~l~~~y~p~~---l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~--------- 72 (276)
T d1fnna2 5 DDSVFSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT--------- 72 (276)
T ss_dssp CGGGGSTTCCCSC---CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---------
T ss_pred CCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC---------
T ss_conf 8232798777887---8877999999999999998578988881688898999899999999999754468---------
Q ss_pred CCCCCCCCCCCCCEEEECCCC----------------------CCCHHHH-HHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 554322359985279990888----------------------7486899-99999998089999998479999589998
Q 000818 532 RECNDFISGKSRNFMEVDGTN----------------------KKGLDRV-RYILKHLSAGLPSASPRFKVFVIDECHLL 588 (1268)
Q Consensus 532 ~sC~~i~~G~s~dvIEIDaSs----------------------~~GID~I-reLIEev~~~p~~~~s~~KVIIIDEid~L 588 (1268)
..++.+++.. ......+ ..+.+.+.. .....++++|+++.+
T Consensus 73 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~ 136 (276)
T d1fnna2 73 -----------ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE-----RDLYMFLVLDDAFNL 136 (276)
T ss_dssp -----------CEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH-----TTCCEEEEEETGGGS
T ss_pred -----------CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCCCCCHHHHHHH
T ss_conf -----------8578732300112466654567764334555325435789999998752-----065433203688875
Q ss_pred CHHHHHHHHHHHCC----CCCCEEEEEEECCC---CCCCHHHHCCE--EEEEECCCCHHHHHHHHHHHHHHC--CCCCCH
Q ss_conf 97989999998707----99958999971899---99656654152--399960799789999999999853--999999
Q 000818 589 PSKTWLAFLKFLEE----PPQRVVFIFITTDI---DNVPRSIQSRC--QKYLFNKIKDGDIVARLRKISAEE--NLNVEP 657 (1268)
Q Consensus 589 S~~a~naLLK~LEe----pp~~VVLILaTte~---ekL~paL~SRc--qvI~F~pls~eELv~iL~kiakkE--Gi~Ide 657 (1268)
.....+.+...++. ....+++|++++.. +.+.+.+.+|+ ..+.|.+++.+++..+|..++... ...+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~ 216 (276)
T d1fnna2 137 APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSE 216 (276)
T ss_dssp CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 35431068888740443356524886258764544311303665511011034412388899999999998524566637
Q ss_pred HHHHHHHHHC---------CCCHHHHHHHHHHHHHH-----CCCCCHHHHHHHHC
Q ss_conf 9999999973---------99999999999999971-----78669999999851
Q 000818 658 DALDLIALNA---------DGSLRDAETMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 658 eALelLA~~S---------~GdLRdAlnlLEkLsll-----gk~IT~edV~eLVG 698 (1268)
+++++|+..+ .||+|.++++++.+... ...|+.++|.+...
T Consensus 217 ~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~ 271 (276)
T d1fnna2 217 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 271 (276)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 8999999970014446553899999999999999999981899849999999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.69 E-value=4e-15 Score=127.96 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=145.0
Q ss_pred HHCHHHHHHCCCCCCCCCCCCHHHHHHHH----HHHHCCCCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 11012464208998763468499999999----9998199997----299995798419999999999960226889998
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLV----NTISRGRIAP----VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKP 527 (1268)
Q Consensus 456 ~~~~~L~eKyRP~tFdDLVGQe~vvqtL~----naIk~gRia~----ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~P 527 (1268)
.+.++|..+|+|..| +|++..++.|. ..+..+..+. +|+|+||||||||++++++++.+.........
T Consensus 4 ~~~~~l~~~~~P~~~---~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~- 79 (287)
T d1w5sa2 4 KDRRVFDENYIPPEL---RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGL- 79 (287)
T ss_dssp SCGGGGSTTCCCSSC---SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCHHHCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 573026875689988---8789999999999999997499888853489967899989999999999998754155567-
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCC----------------------HHHH-HHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 8876554322359985279990888748----------------------6899-9999999808999999847999958
Q 000818 528 CGYCRECNDFISGKSRNFMEVDGTNKKG----------------------LDRV-RYILKHLSAGLPSASPRFKVFVIDE 584 (1268)
Q Consensus 528 Cg~C~sC~~i~~G~s~dvIEIDaSs~~G----------------------ID~I-reLIEev~~~p~~~~s~~KVIIIDE 584 (1268)
...+..++...... ...+ ..+.+.... .....++++||
T Consensus 80 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~iide 140 (287)
T d1w5sa2 80 --------------TVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV-----ENHYLLVILDE 140 (287)
T ss_dssp --------------CEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH-----HTCEEEEEEES
T ss_pred --------------CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-----CCCCCCCCEEE
T ss_conf --------------84166303333465046788876530432333451278899999999985-----46766541257
Q ss_pred CCCCC------HHHHHHHHHHHCCC-----CCCEEEEEEECCCC------CCCHHHHCC-EEEEEECCCCHHHHHHHHHH
Q ss_conf 99989------79899999987079-----99589999718999------965665415-23999607997899999999
Q 000818 585 CHLLP------SKTWLAFLKFLEEP-----PQRVVFIFITTDID------NVPRSIQSR-CQKYLFNKIKDGDIVARLRK 646 (1268)
Q Consensus 585 id~LS------~~a~naLLK~LEep-----p~~VVLILaTte~e------kL~paL~SR-cqvI~F~pls~eELv~iL~k 646 (1268)
++.+. ......|...++.. .....+|++++..+ ...+.+.+| +..+.|.+++.+++..++..
T Consensus 141 ~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~ 220 (287)
T d1w5sa2 141 FQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQ 220 (287)
T ss_dssp THHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 88851566554267898899987432010456514776243089999998625201123220652257759999998766
Q ss_pred HHHHC--CCCCCHHHHHHHHHHC------CCCHHHHHHHHHHHHHH-----CCCCCHHHHHHHHC
Q ss_conf 99853--9999999999999973------99999999999999971-----78669999999851
Q 000818 647 ISAEE--NLNVEPDALDLIALNA------DGSLRDAETMLDQLSLL-----GKRITSSLVNELVG 698 (1268)
Q Consensus 647 iakkE--Gi~IdeeALelLA~~S------~GdLRdAlnlLEkLsll-----gk~IT~edV~eLVG 698 (1268)
+++.. ...++++++++|++.+ .|++|.|+++|+.+... ...||.++|.+++.
T Consensus 221 r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~ 285 (287)
T d1w5sa2 221 RAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285 (287)
T ss_dssp HHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 67775246877999999999997230367889999999999999999984999879999999984
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.1e-14 Score=124.65 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=165.1
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCC
Q ss_conf 124642089987634684999999999998199997299995798419999999999960226-8899988876554322
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-TDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~-~e~~~PCg~C~sC~~i 537 (1268)
+.|+++.+-..++.++|++..+..+...+.+.+. ++.||.||||+|||++++.||+.+.... ++..
T Consensus 6 ~dlt~~a~~~~ld~~igRd~Ei~~l~~iL~r~~k-~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l------------ 72 (268)
T d1r6bx2 6 TNLNQLARVGGIDPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM------------ 72 (268)
T ss_dssp CBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGG------------
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC------------
T ss_conf 8789999849998663809999999999954766-896798889886779999999999817845000------------
Q ss_pred CCCCCCCEEEECCCC------CCC--HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC---------HHHHHHHHHHH
Q ss_conf 359985279990888------748--6899999999980899999984799995899989---------79899999987
Q 000818 538 ISGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP---------SKTWLAFLKFL 600 (1268)
Q Consensus 538 ~~G~s~dvIEIDaSs------~~G--ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS---------~~a~naLLK~L 600 (1268)
....+++++.+. +.| .+.+..+++++.. .+..|+||||+|.|- .++.+.|..+|
T Consensus 73 ---~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~------~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L 143 (268)
T d1r6bx2 73 ---ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 143 (268)
T ss_dssp ---TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS
T ss_pred ---CCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHC------CCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf ---354127864056750676300589999999998612------67846884336988627777886411798764887
Q ss_pred CCCCCCEEEEEEECCCC-----CCCHHHHCCEEEEEECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHC----
Q ss_conf 07999589999718999-----96566541523999607997899999999998----539999999999999973----
Q 000818 601 EEPPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISA----EENLNVEPDALDLIALNA---- 667 (1268)
Q Consensus 601 Eepp~~VVLILaTte~e-----kL~paL~SRcqvI~F~pls~eELv~iL~kiak----kEGi~IdeeALelLA~~S---- 667 (1268)
..+ .+.+|++|+..+ .-.+++.+||+++.+.+|+.++...+|..... ..++.++++|+..++.++
T Consensus 144 ~rg--~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi 221 (268)
T d1r6bx2 144 SSG--KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 221 (268)
T ss_dssp SSC--CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHC
T ss_pred HCC--CCEEEEECCHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHC
T ss_conf 479--875999579999999986167888652100368989999999999866888526877857478999999998560
Q ss_pred --CCCHHHHHHHHHHHHHH---------CCCCCHHHHHHHHC
Q ss_conf --99999999999999971---------78669999999851
Q 000818 668 --DGSLRDAETMLDQLSLL---------GKRITSSLVNELVG 698 (1268)
Q Consensus 668 --~GdLRdAlnlLEkLsll---------gk~IT~edV~eLVG 698 (1268)
..-+..|+.+||.++.. ...|+.++|..++.
T Consensus 222 ~~~~~PdKAIdllDea~a~~~~~~~~~~~~~i~~~di~~~i~ 263 (268)
T d1r6bx2 222 NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVA 263 (268)
T ss_dssp TTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 478898489999999999998500246766479999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=4.1e-16 Score=135.43 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=133.5
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHC-----------C-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99-876346849999999999981-----------9-9997299995798419999999999960226889998887655
Q 000818 467 PI-FFDELIGQNIVVQSLVNTISR-----------G-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533 (1268)
Q Consensus 467 P~-tFdDLVGQe~vvqtL~naIk~-----------g-Ria~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~s 533 (1268)
|. +|+||+|.+.+++.|.+.+.. + ..+..+|||||+|||||++|+++|.++
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~---------------- 65 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---------------- 65 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT----------------
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH----------------
T ss_conf 9998999667899999999999999639999986799988757887899876304778878771----------------
Q ss_pred CCCCCCCCCCCEEEECCCCC------CCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH--------------HH
Q ss_conf 43223599852799908887------48689999999998089999998479999589998979--------------89
Q 000818 534 CNDFISGKSRNFMEVDGTNK------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK--------------TW 593 (1268)
Q Consensus 534 C~~i~~G~s~dvIEIDaSs~------~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~--------------a~ 593 (1268)
+..++.+++++. .....++.++..+....| .|++|||+|.+... ..
T Consensus 66 --------~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p------~il~ideid~l~~~~~~~~~~~~~~~~~~~ 131 (265)
T d1r7ra3 66 --------QANFISIKGPELLTMWFGESEANVREIFDKARQAAP------CVLFFDELDSIAKARGGNIGDGGGAADRVI 131 (265)
T ss_dssp --------TCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTCS------EEEEESSGGGTCCHHHHCCCTTHHHHHHHH
T ss_pred --------CCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHCCC------CCEEHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf --------894799887995253165158999999999986398------435687546324557876788737999999
Q ss_pred HHHHHHHCCC--CCCEEEEEEECCCCCCCHHHHC--CEEE-EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 9999987079--9958999971899996566541--5239-996079978999999999985399999999999999739
Q 000818 594 LAFLKFLEEP--PQRVVFIFITTDIDNVPRSIQS--RCQK-YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNAD 668 (1268)
Q Consensus 594 naLLK~LEep--p~~VVLILaTte~ekL~paL~S--Rcqv-I~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~ 668 (1268)
+.|+..|+.. ...+++|++||.++.+++++++ |+.. |.|.+|+.++...+|+..+.+.... .+..+..|+..+.
T Consensus 132 ~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~ 210 (265)
T d1r7ra3 132 NQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTN 210 (265)
T ss_dssp HHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCC
T ss_conf 999999628677799899991799222799780787764799956607888999999996057710-2436899982589
Q ss_pred C-CHHHHHHHHHHHHHH
Q ss_conf 9-999999999999971
Q 000818 669 G-SLRDAETMLDQLSLL 684 (1268)
Q Consensus 669 G-dLRdAlnlLEkLsll 684 (1268)
| +.+++.++++.+...
T Consensus 211 g~s~~di~~lv~~A~~~ 227 (265)
T d1r7ra3 211 GFSGADLTEICQRACKL 227 (265)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=3.8e-14 Score=120.54 Aligned_cols=203 Identities=14% Similarity=0.163 Sum_probs=159.5
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCC
Q ss_conf 124642089987634684999999999998199997299995798419999999999960226-8899988876554322
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-TDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~-~e~~~PCg~C~sC~~i 537 (1268)
..|+++.+-..++.++|++..++.+...+.+.+. ++.||.||||+|||++++.||+.+.... +...
T Consensus 10 ~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k-~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l------------ 76 (387)
T d1qvra2 10 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTK-NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL------------ 76 (387)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSC-CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS------------
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHH------------
T ss_conf 9889999859999874808999999999824889-997687999988999999999999808999788------------
Q ss_pred CCCCCCCEEEECCCC------CCC--HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC--------HHHHHHHHHHHC
Q ss_conf 359985279990888------748--6899999999980899999984799995899989--------798999999870
Q 000818 538 ISGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP--------SKTWLAFLKFLE 601 (1268)
Q Consensus 538 ~~G~s~dvIEIDaSs------~~G--ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS--------~~a~naLLK~LE 601 (1268)
.+..++.+|... ++| ...+..++..+... ...-|+||||+|.|- .++.|.|..+|.
T Consensus 77 ---~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~-----~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~ 148 (387)
T d1qvra2 77 ---KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS-----QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA 148 (387)
T ss_dssp ---TTCEEEEECC-----------CHHHHHHHHHHHHHTT-----CSSEEEEECCC-------------------HHHHH
T ss_pred ---CCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCC-----CCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf ---6966899557666526674136899999999985058-----99669872408888427778774138999999973
Q ss_pred CCCCCEEEEEEECCCC----CCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHC------
Q ss_conf 7999589999718999----9656654152399960799789999999999853----9999999999999973------
Q 000818 602 EPPQRVVFIFITTDID----NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE----NLNVEPDALDLIALNA------ 667 (1268)
Q Consensus 602 epp~~VVLILaTte~e----kL~paL~SRcqvI~F~pls~eELv~iL~kiakkE----Gi~IdeeALelLA~~S------ 667 (1268)
.+ .+.+|++||..+ .-+++|.+||+.|.+.+|+.++...+|+.+.... ++.|+++|+..++.++
T Consensus 149 rg--~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~ 226 (387)
T d1qvra2 149 RG--ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITE 226 (387)
T ss_dssp TT--CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCS
T ss_pred CC--CCCEEEECCHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 78--8516663689999876336799982461127998678899999999999874047746699999999850236665
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999971
Q 000818 668 DGSLRDAETMLDQLSLL 684 (1268)
Q Consensus 668 ~GdLRdAlnlLEkLsll 684 (1268)
..-+..|+.+||.++..
T Consensus 227 r~~PdKAidlld~a~a~ 243 (387)
T d1qvra2 227 RRLPDKAIDLIDEAAAR 243 (387)
T ss_dssp SCTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 66704688999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=1.7e-13 Score=115.61 Aligned_cols=180 Identities=19% Similarity=0.294 Sum_probs=127.3
Q ss_pred CCCCCCHHHHHHHHHHHHC--------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6346849999999999981--------99997299995798419999999999960226889998887655432235998
Q 000818 471 DELIGQNIVVQSLVNTISR--------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vvqtL~naIk~--------gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s 542 (1268)
..|+||+.+++.+..++.. .++...+||.||+|+|||.+|+.||+.+.
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~------------------------ 77 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------------------------ 77 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------------------------
T ss_pred CEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC------------------------
T ss_conf 80648599999999999999726788888765899977875006999999986336------------------------
Q ss_pred CCEEEECCCCC----------------CCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---
Q ss_conf 52799908887----------------48689999999998089999998479999589998979899999987079---
Q 000818 543 RNFMEVDGTNK----------------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--- 603 (1268)
Q Consensus 543 ~dvIEIDaSs~----------------~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep--- 603 (1268)
.+|+.+|++.. .|.+.-..+.+.+... .+.|+++||++.++++.++.|++.|+++
T Consensus 78 ~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~------~~~vvl~DeieKa~~~V~~~lLqild~G~lt 151 (315)
T d1r6bx3 78 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH------PHAVLLLDEIEKAHPDVFNILLQVMDNGTLT 151 (315)
T ss_dssp CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC------SSEEEEEETGGGSCHHHHHHHHHHHHHSEEE
T ss_pred CCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC------CCCHHHHCCCCCCCCHHHHHHHHHHCCCEEC
T ss_conf 7706741544455446665214678750114687033777738------5430221222301633766567762146025
Q ss_pred --------CCCEEEEEEECCCC-------------------------CCCHHHHCCEEE-EEECCCCHHHHHHHHHHHHH
Q ss_conf --------99589999718999-------------------------965665415239-99607997899999999998
Q 000818 604 --------PQRVVFIFITTDID-------------------------NVPRSIQSRCQK-YLFNKIKDGDIVARLRKISA 649 (1268)
Q Consensus 604 --------p~~VVLILaTte~e-------------------------kL~paL~SRcqv-I~F~pls~eELv~iL~kiak 649 (1268)
-.++++|+++|-.. .+.|.+..|+.. +.|.++..+++..++...+.
T Consensus 152 d~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~ 231 (315)
T d1r6bx3 152 DNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 231 (315)
T ss_dssp ETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 88997268632588841440168888620000056666768999997548989866321001363015589999999999
Q ss_pred HC---------CCCCCHHHHHHHHHHC---CCCHHHHHHHHHH
Q ss_conf 53---------9999999999999973---9999999999999
Q 000818 650 EE---------NLNVEPDALDLIALNA---DGSLRDAETMLDQ 680 (1268)
Q Consensus 650 kE---------Gi~IdeeALelLA~~S---~GdLRdAlnlLEk 680 (1268)
+. .+.++++|+.+|+... ....|.+.+.+++
T Consensus 232 ~~~~~l~~~~i~l~~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~ 274 (315)
T d1r6bx3 232 ELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQD 274 (315)
T ss_dssp HHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999987648622027999999999678977784169999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.55 E-value=1.4e-13 Score=116.32 Aligned_cols=176 Identities=16% Similarity=0.246 Sum_probs=114.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-------HCCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8763468499999999999-------8199--997299995798419999999999960226889998887655432235
Q 000818 469 FFDELIGQNIVVQSLVNTI-------SRGR--IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 469 tFdDLVGQe~vvqtL~naI-------k~gR--ia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~ 539 (1268)
-...+||+...++.+...+ .... ....+|||||||||||++|+++|+++
T Consensus 7 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~---------------------- 64 (246)
T d1d2na_ 7 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---------------------- 64 (246)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------------------
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCC----------------------
T ss_conf 2069847687999999999999999863688998079988969998899999986201----------------------
Q ss_pred CCCCCEEEECCCCCC-------CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC----------CHHHHHHHHHHHCC
Q ss_conf 998527999088874-------8689999999998089999998479999589998----------97989999998707
Q 000818 540 GKSRNFMEVDGTNKK-------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLL----------PSKTWLAFLKFLEE 602 (1268)
Q Consensus 540 G~s~dvIEIDaSs~~-------GID~IreLIEev~~~p~~~~s~~KVIIIDEid~L----------S~~a~naLLK~LEe 602 (1268)
+..|+.+++++.. ....++.+++.+.... ..|+||||+|.+ .....+.|+..++.
T Consensus 65 --~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~------p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~ 136 (246)
T d1d2na_ 65 --NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ------LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 136 (246)
T ss_dssp --TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS------EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred --CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------CCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf --002333456522356542112244444565555324------222331025667651345441247899999998607
Q ss_pred CCC---CEEEEEEECCCCCCCHH-HHCCEEE-EEECCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-----CH
Q ss_conf 999---58999971899996566-5415239-9960799-789999999999853999999999999997399-----99
Q 000818 603 PPQ---RVVFIFITTDIDNVPRS-IQSRCQK-YLFNKIK-DGDIVARLRKISAEENLNVEPDALDLIALNADG-----SL 671 (1268)
Q Consensus 603 pp~---~VVLILaTte~ekL~pa-L~SRcqv-I~F~pls-~eELv~iL~kiakkEGi~IdeeALelLA~~S~G-----dL 671 (1268)
... .+++|++||.++.++++ +.+||.. |.|+.+. .+++..++... + .++...+..++..+.| .+
T Consensus 137 ~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~~----~-~~~~~~~~~i~~~~~g~~~~~~i 211 (246)
T d1d2na_ 137 APPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL----G-NFKDKERTTIAQQVKGKKVWIGI 211 (246)
T ss_dssp CCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH----T-CSCHHHHHHHHHHHTTSEEEECH
T ss_pred CCCCCCCEEEEECCCCHHHCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHC----C-CCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 776545014553248832256102018663388559910599999999742----6-89868899999974899553419
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000818 672 RDAETMLD 679 (1268)
Q Consensus 672 RdAlnlLE 679 (1268)
+.+++.++
T Consensus 212 k~ll~~ie 219 (246)
T d1d2na_ 212 KKLLMLIE 219 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=2.6e-13 Score=114.21 Aligned_cols=183 Identities=19% Similarity=0.293 Sum_probs=130.2
Q ss_pred CCCCCCHHHHHHHHHHHHC--------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6346849999999999981--------99997299995798419999999999960226889998887655432235998
Q 000818 471 DELIGQNIVVQSLVNTISR--------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 471 dDLVGQe~vvqtL~naIk~--------gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s 542 (1268)
..|+||+++++.+.+++.. .++...+||+||+|+|||.+|+.||+.+... .
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~---------------------~ 81 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---------------------E 81 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---------------------G
T ss_pred CEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC---------------------C
T ss_conf 8270879999999999999865789988876699997888624899999999983588---------------------7
Q ss_pred CCEEEECCCCCC----------------CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---
Q ss_conf 527999088874----------------8689999999998089999998479999589998979899999987079---
Q 000818 543 RNFMEVDGTNKK----------------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--- 603 (1268)
Q Consensus 543 ~dvIEIDaSs~~----------------GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep--- 603 (1268)
.+++.++.+++. |.+.-..+.+.+...| +.||++||++.+++..++.|++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p------~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~ 155 (315)
T d1qvra3 82 EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP------YSVILFDEIEKAHPDVFNILLQILDDGRLT 155 (315)
T ss_dssp GGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS------SEEEEESSGGGSCHHHHHHHHHHHTTTEEC
T ss_pred CCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC------CCEEEEEHHHHCCHHHHHHHHHHHCCCCEE
T ss_conf 53488731554542156651489998767466784899998499------837997147540789998999986138342
Q ss_pred --------CCCEEEEEEECCC--------------------------CCCCHHHHCCEEE-EEECCCCHHHHHHHHHHHH
Q ss_conf --------9958999971899--------------------------9965665415239-9960799789999999999
Q 000818 604 --------PQRVVFIFITTDI--------------------------DNVPRSIQSRCQK-YLFNKIKDGDIVARLRKIS 648 (1268)
Q Consensus 604 --------p~~VVLILaTte~--------------------------ekL~paL~SRcqv-I~F~pls~eELv~iL~kia 648 (1268)
..+++||+++|-. ..+.|.+..|+.. +.|.++..+++..++...+
T Consensus 156 ~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l 235 (315)
T d1qvra3 156 DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQL 235 (315)
T ss_dssp CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred CCCCCEECCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 79996853754289874245767776400112204555677888888623887872178054321024543689999999
Q ss_pred HHC---------CCCCCHHHHHHHHHHC---CCCHHHHHHHHHH
Q ss_conf 853---------9999999999999973---9999999999999
Q 000818 649 AEE---------NLNVEPDALDLIALNA---DGSLRDAETMLDQ 680 (1268)
Q Consensus 649 kkE---------Gi~IdeeALelLA~~S---~GdLRdAlnlLEk 680 (1268)
.+. .+.++++++++|++.. .-..|.+...+++
T Consensus 236 ~~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~ 279 (315)
T d1qvra3 236 SYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 279 (315)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99999987242022066999999999488987782108999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=3.4e-13 Score=113.33 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHC-------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 346849999999999981-------------9999729999579841999999999996022688999888765543223
Q 000818 472 ELIGQNIVVQSLVNTISR-------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 472 DLVGQe~vvqtL~naIk~-------------gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~ 538 (1268)
.|+||+++++.|..++.+ ..++..+||+||||||||.+|+++|+.+
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~--------------------- 73 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--------------------- 73 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCC---------------------
T ss_conf 13491999999999999898772457877667898669998999988889999986213---------------------
Q ss_pred CCCCCCEEEECCCCCCC--------HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH------------HHHHHHH
Q ss_conf 59985279990888748--------689999999998089999998479999589998979------------8999999
Q 000818 539 SGKSRNFMEVDGTNKKG--------LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK------------TWLAFLK 598 (1268)
Q Consensus 539 ~G~s~dvIEIDaSs~~G--------ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~------------a~naLLK 598 (1268)
..+++.++++.... -..++.+++.+..... ......||||||+|.+++. .++.||.
T Consensus 74 ---~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~-~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~ 149 (309)
T d1ofha_ 74 ---NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID-AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP 149 (309)
T ss_dssp ---TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHH-HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHH
T ss_pred ---CCCHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCC-CCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf ---22100034433010115764113333332123312320-03578568842464540301576412012579987528
Q ss_pred HHCCC----------CCCEEEEEE----ECCCCCCCHHHHCCEEE-EEECCCCHHHHHHHHH
Q ss_conf 87079----------995899997----18999965665415239-9960799789999999
Q 000818 599 FLEEP----------PQRVVFIFI----TTDIDNVPRSIQSRCQK-YLFNKIKDGDIVARLR 645 (1268)
Q Consensus 599 ~LEep----------p~~VVLILa----Tte~ekL~paL~SRcqv-I~F~pls~eELv~iL~ 645 (1268)
.++.. ..++.||++ ++.+..+.|+++.|+.. +.|.+++..++.+++.
T Consensus 150 ~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~ 211 (309)
T d1ofha_ 150 LVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 211 (309)
T ss_dssp HHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred HHCCCEEECCCEEEECCCEEEEECCCHHHCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHH
T ss_conf 86198885588079746226870461221472001254431020030025788799999998
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.51 E-value=5.1e-13 Score=112.01 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=125.5
Q ss_pred CCCCCHHHHHHHHHHHHC-----------------------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 346849999999999981-----------------------------999972999957984199999999999602268
Q 000818 472 ELIGQNIVVQSLVNTISR-----------------------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522 (1268)
Q Consensus 472 DLVGQe~vvqtL~naIk~-----------------------------gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~ 522 (1268)
.||||+++++.+..++.+ .++...+||.||.|+|||.+|+.||+.+
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~----- 92 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 92 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-----
T ss_conf 623808999999999998998887788764044443311112233456787532441899863789999998644-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH--------HHHHHHHHHHHCCCCCCCCCCEEEEEECCCC-------
Q ss_conf 8999888765543223599852799908887486--------8999999999808999999847999958999-------
Q 000818 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGL--------DRVRYILKHLSAGLPSASPRFKVFVIDECHL------- 587 (1268)
Q Consensus 523 e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GI--------D~IreLIEev~~~p~~~~s~~KVIIIDEid~------- 587 (1268)
..+|+.+|++.+.-. ..+.+++....... ....+.|+++||++.
T Consensus 93 -------------------~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v--~~~~~~iv~lDEieK~~~~s~~ 151 (364)
T d1um8a_ 93 -------------------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV--QKAQKGIVFIDEIDKISRLSEN 151 (364)
T ss_dssp -------------------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCH--HHHTTSEEEEETGGGC------
T ss_pred -------------------CCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHCHHHH--HHHHCCCCHHHHHHHHCCCCCC
T ss_conf -------------------3533111222014431667631210344542024589--9865463010166653134544
Q ss_pred -------CCHHHHHHHHHHHCCCC-------------CCEEEEEEECC--------------------------------
Q ss_conf -------89798999999870799-------------95899997189--------------------------------
Q 000818 588 -------LPSKTWLAFLKFLEEPP-------------QRVVFIFITTD-------------------------------- 615 (1268)
Q Consensus 588 -------LS~~a~naLLK~LEepp-------------~~VVLILaTte-------------------------------- 615 (1268)
..+..++.||+.++..- .+.++|.+++-
T Consensus 152 ~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (364)
T d1um8a_ 152 RSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMS 231 (364)
T ss_dssp --------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 55551221438898645540586122587778767764168996113455411131014566543014454310001100
Q ss_pred -----------------CCCCCHHHHCCEEE-EEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHH
Q ss_conf -----------------99965665415239-99607997899999999-----------9985399--99999999999
Q 000818 616 -----------------IDNVPRSIQSRCQK-YLFNKIKDGDIVARLRK-----------ISAEENL--NVEPDALDLIA 664 (1268)
Q Consensus 616 -----------------~ekL~paL~SRcqv-I~F~pls~eELv~iL~k-----------iakkEGi--~IdeeALelLA 664 (1268)
...+.|.++.|... +.|.+++.+++.+++.. .+..+|+ .++++|+++|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la 311 (364)
T d1um8a_ 232 KKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIA 311 (364)
T ss_dssp TTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
T ss_conf 12466653024578776530079999872301557402099999999879999999999998757927999899999999
Q ss_pred HHC---CCCHHHHHHHHHHH
Q ss_conf 973---99999999999999
Q 000818 665 LNA---DGSLRDAETMLDQL 681 (1268)
Q Consensus 665 ~~S---~GdLRdAlnlLEkL 681 (1268)
..+ .-..|-+...++++
T Consensus 312 ~~g~d~~~GAR~L~riie~~ 331 (364)
T d1um8a_ 312 QLALERKTGARGLRAIIEDF 331 (364)
T ss_dssp HHHHHTTCTGGGHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHH
T ss_conf 95658777836789999999
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=3.8e-12 Score=105.44 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=142.8
Q ss_pred CCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 346849999999999981-9999729999579841999999999996022688999888765543223599852799908
Q 000818 472 ELIGQNIVVQSLVNTISR-GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG 550 (1268)
Q Consensus 472 DLVGQe~vvqtL~naIk~-gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDa 550 (1268)
|+||+...++.+.+.+.. ......+|++||+||||+.+|+++...-. .....++.+++
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~---------------------~~~~~~~~~~~ 59 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD---------------------RSKEPFVALNV 59 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST---------------------TTTSCEEEEET
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC---------------------CCCCCCCCCHH
T ss_conf 958629999999999999968899789989998179999999999658---------------------76533202102
Q ss_pred CCCCCHHHHHHHHHHHHCC---CCC------CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-----------CCCEEEE
Q ss_conf 8874868999999999808---999------9998479999589998979899999987079-----------9958999
Q 000818 551 TNKKGLDRVRYILKHLSAG---LPS------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-----------PQRVVFI 610 (1268)
Q Consensus 551 Ss~~GID~IreLIEev~~~---p~~------~~s~~KVIIIDEid~LS~~a~naLLK~LEep-----------p~~VVLI 610 (1268)
...........++...... ... ..+...++||||++.|+...+..|+++|++. ...+++|
T Consensus 60 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI 139 (247)
T d1ny5a2 60 ASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 139 (247)
T ss_dssp TTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCEEECCCCCCEECCEEEE
T ss_conf 34310112887628535776775335588877238997999583759999999999999759878789997023375999
Q ss_pred EEECCCC-------CCCHHHHCCEE--EEEECCCC--HHHHHHHHHHH----HHHCCC---CCCHHHHHHHHHHC-CCCH
Q ss_conf 9718999-------96566541523--99960799--78999999999----985399---99999999999973-9999
Q 000818 611 FITTDID-------NVPRSIQSRCQ--KYLFNKIK--DGDIVARLRKI----SAEENL---NVEPDALDLIALNA-DGSL 671 (1268)
Q Consensus 611 LaTte~e-------kL~paL~SRcq--vI~F~pls--~eELv~iL~ki----akkEGi---~IdeeALelLA~~S-~GdL 671 (1268)
++|+.+- .+.+.+..|+. .+.++++. .+++..++..+ +.+.+. .++++|++.|..+. .||+
T Consensus 140 ~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl 219 (247)
T d1ny5a2 140 AATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV 219 (247)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred EECCCCHHHHHHCCCCCHHHHHHCCEEEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHH
T ss_conf 93397999998859974888864081065589701162457664001343346650787788899999999848999899
Q ss_pred HHHHHHHHHHHHH--CCCCCHHHHHHHH
Q ss_conf 9999999999971--7866999999985
Q 000818 672 RDAETMLDQLSLL--GKRITSSLVNELV 697 (1268)
Q Consensus 672 RdAlnlLEkLsll--gk~IT~edV~eLV 697 (1268)
+.+.+.++++... +..|+.+++-.++
T Consensus 220 ~EL~~~l~~a~~~~~~~~I~~~dl~~l~ 247 (247)
T d1ny5a2 220 RELKNVIERAVLFSEGKFIDRGELSCLV 247 (247)
T ss_dssp HHHHHHHHHHHHHCCSSEECHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCEECHHHCCCCC
T ss_conf 9999999999981898858879800219
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.46 E-value=2.1e-12 Score=107.45 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=99.7
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCCC
Q ss_conf 899-876346849999999999981999972999957984199999999999602268899-----98887655432235
Q 000818 466 KPI-FFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQT-----KPCGYCRECNDFIS 539 (1268)
Q Consensus 466 RP~-tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~-----~PCg~C~sC~~i~~ 539 (1268)
||. -|.+|+||+.+++.|.-++.... .|++||+||||||||++|+.++..|......+. .+...|..+.....
T Consensus 1 ~~~~~f~~I~Gq~~~kral~laa~~~~-~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T d1g8pa_ 1 RPVFPFSAIVGQEDMKLALLLTAVDPG-IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 79 (333)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGG-GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCHHHCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHCCC
T ss_conf 998985140694999999999976469-9708998899852999999998737982154057534675344620220124
Q ss_pred C----CCCCEEEECCCCCCCHHHH------HHHHHHHHCC--C-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---
Q ss_conf 9----9852799908887486899------9999999808--9-999998479999589998979899999987079---
Q 000818 540 G----KSRNFMEVDGTNKKGLDRV------RYILKHLSAG--L-PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP--- 603 (1268)
Q Consensus 540 G----~s~dvIEIDaSs~~GID~I------reLIEev~~~--p-~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep--- 603 (1268)
. ....++...... ..+.+ ...+..-... + ....+...|+||||++.+....+++|+..||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~ 157 (333)
T d1g8pa_ 80 TNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV 157 (333)
T ss_dssp CCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred CCCCCCCCCEEECCCCC--CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 57521237524236778--8543557410211023686022025311355637631537777799999874453077687
Q ss_pred ----------CCCEEEEEEECCC-CCCCHHHHCCEEE-EEECCCCH
Q ss_conf ----------9958999971899-9965665415239-99607997
Q 000818 604 ----------PQRVVFIFITTDI-DNVPRSIQSRCQK-YLFNKIKD 637 (1268)
Q Consensus 604 ----------p~~VVLILaTte~-ekL~paL~SRcqv-I~F~pls~ 637 (1268)
|..+.+|.++|-. .++++++++||.. +.+..+..
T Consensus 158 i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~ 203 (333)
T d1g8pa_ 158 VERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 203 (333)
T ss_dssp ECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred ECCCCCEECCCCCEEEEEECCCCCCCCCCCHHHHHCCEEECCCCCH
T ss_conf 5135843048888799984576312366310324133443268640
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=3.6e-11 Score=98.04 Aligned_cols=183 Identities=13% Similarity=0.215 Sum_probs=125.1
Q ss_pred CCCCCCC-C--CHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9876346-8--4999999999998199-9972999957984199999999999602268899988876554322359985
Q 000818 468 IFFDELI-G--QNIVVQSLVNTISRGR-IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSR 543 (1268)
Q Consensus 468 ~tFdDLV-G--Qe~vvqtL~naIk~gR-ia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~ 543 (1268)
.+|++++ | +..+...+.+++.... ..+.++||||+|+|||.++++++.++... ..
T Consensus 7 ~tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~---------------------~~ 65 (213)
T d1l8qa2 7 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---------------------GY 65 (213)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---------------------TC
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC---------------------CC
T ss_conf 976531377749999999999986768778857998889983999999999874467---------------------65
Q ss_pred CEEEECCCCCCCHHH---------HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--HHHHHHHHHHCCC-CCCEEEEE
Q ss_conf 279990888748689---------99999999808999999847999958999897--9899999987079-99589999
Q 000818 544 NFMEVDGTNKKGLDR---------VRYILKHLSAGLPSASPRFKVFVIDECHLLPS--KTWLAFLKFLEEP-PQRVVFIF 611 (1268)
Q Consensus 544 dvIEIDaSs~~GID~---------IreLIEev~~~p~~~~s~~KVIIIDEid~LS~--~a~naLLK~LEep-p~~VVLIL 611 (1268)
.++.++.... ... ..++.+.... ..+++||++|.+.. .....|..++... .....+|+
T Consensus 66 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iii 135 (213)
T d1l8qa2 66 RVIYSSADDF--AQAMVEHLKKGTINEFRNMYKS--------VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIIL 135 (213)
T ss_dssp CEEEEEHHHH--HHHHHHHHHHTCHHHHHHHHHT--------CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEECHHHH--HHHHHHHHHCCCHHHHHHHHHH--------CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 0488443787--9999999871662667898762--------13010112655058657788999999987631663899
Q ss_pred EECCCC----CCCHHHHCCE---EEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 718999----9656654152---39996079978999999999985399999999999999739999999999999997
Q 000818 612 ITTDID----NVPRSIQSRC---QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL 683 (1268)
Q Consensus 612 aTte~e----kL~paL~SRc---qvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsl 683 (1268)
+++.+. .+.+.+.||+ ..+.+. |+.++...+|++.+...|+.++++++++|++.. .++|+++..|.++.+
T Consensus 136 ts~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~l 212 (213)
T d1l8qa2 136 ASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 212 (213)
T ss_dssp EESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred ECCCCCHHCCCCCHHHHHHHHCCEEEEEC-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHHC
T ss_conf 54875100134326788886185689978-882799999999999829999999999999856-869989999998634
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.9e-12 Score=106.35 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=125.9
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCC
Q ss_conf 124642089987634684999999999998199997299995798419999999999960226-8899988876554322
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-TDQTKPCGYCRECNDF 537 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~-~e~~~PCg~C~sC~~i 537 (1268)
..|+++.+...++.++|++..++.+...+.+.+. ++.||.||||+|||++++.||+.+.... +...
T Consensus 10 ~dlt~~a~~g~ld~~igRd~Ei~~l~~iL~r~~k-~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L------------ 76 (195)
T d1jbka_ 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL------------ 76 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGG------------
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHH------------
T ss_conf 9889999839999872809999999999953588-873998358754479999999999808999788------------
Q ss_pred CCCCCCCEEEECCCC------CCC--HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------HHHHHHHHHHC
Q ss_conf 359985279990888------748--68999999999808999999847999958999897--------98999999870
Q 000818 538 ISGKSRNFMEVDGTN------KKG--LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPS--------KTWLAFLKFLE 601 (1268)
Q Consensus 538 ~~G~s~dvIEIDaSs------~~G--ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~--------~a~naLLK~LE 601 (1268)
....++++|.+. ++| .+.+..+++++... ...-|+||||+|.|-. ++.+.|..+|+
T Consensus 77 ---~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~-----~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~ 148 (195)
T d1jbka_ 77 ---KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ-----EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp ---TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS-----TTTEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred ---CCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCC-----CCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf ---1856999669998645874077999999999987317-----98089972608998437877775238999999985
Q ss_pred CCCCCEEEEEEECCCC-----CCCHHHHCCEEEEEECCCCHHHHHHHH
Q ss_conf 7999589999718999-----965665415239996079978999999
Q 000818 602 EPPQRVVFIFITTDID-----NVPRSIQSRCQKYLFNKIKDGDIVARL 644 (1268)
Q Consensus 602 epp~~VVLILaTte~e-----kL~paL~SRcqvI~F~pls~eELv~iL 644 (1268)
.+ .+.+|++|+..+ .-.+++.+||+.|.+..|+.++...+|
T Consensus 149 rg--~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 149 RG--ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TT--SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CC--CCEEEECCCHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHH
T ss_conf 79--95498518999999998738899963987545898989999985
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.17 E-value=6.8e-11 Score=95.97 Aligned_cols=171 Identities=14% Similarity=0.082 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 46849999999999981999-97299995798419999999999960226889998887655432235998527999088
Q 000818 473 LIGQNIVVQSLVNTISRGRI-APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT 551 (1268)
Q Consensus 473 LVGQe~vvqtL~naIk~gRi-a~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaS 551 (1268)
+.+++..+..+...+..+.+ .+.+|||||||||||++|.++|+.+ +..|++++++
T Consensus 133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~------------------------~~~~i~in~s 188 (362)
T d1svma_ 133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------------------------GGKALNVNLP 188 (362)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------------------------CCEEECCSSC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHC------------------------CCCEEEEECC
T ss_conf 4325899999999998289976769998999988899999999985------------------------9978999774
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-----------HHHHHHHHHHHCCCCC--------------C
Q ss_conf 87486899999999980899999984799995899989-----------7989999998707999--------------5
Q 000818 552 NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-----------SKTWLAFLKFLEEPPQ--------------R 606 (1268)
Q Consensus 552 s~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS-----------~~a~naLLK~LEepp~--------------~ 606 (1268)
+.+....++... ...+.++|+++... -+..+.|+..++.... .
T Consensus 189 ~~rs~~~l~~~~------------~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~ 256 (362)
T d1svma_ 189 LDRLNFELGVAI------------DQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIF 256 (362)
T ss_dssp TTTHHHHHGGGT------------TCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECC
T ss_pred CHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHCHHHHCC
T ss_conf 201188887577------------77998999998765410689972887507311345688601344421002455316
Q ss_pred EEEEEEECCCCCCCHHHHCCEEE--EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHCCCCHHHHHHHHHH
Q ss_conf 89999718999965665415239--996079978999999999985399999999999-999739999999999999
Q 000818 607 VVFIFITTDIDNVPRSIQSRCQK--YLFNKIKDGDIVARLRKISAEENLNVEPDALDL-IALNADGSLRDAETMLDQ 680 (1268)
Q Consensus 607 VVLILaTte~ekL~paL~SRcqv--I~F~pls~eELv~iL~kiakkEGi~IdeeALel-LA~~S~GdLRdAlnlLEk 680 (1268)
..+|++||+.. .+.....|+.. +.+.++.....+.++..++.++.+.++.+++.. +...++++++.+++.+..
T Consensus 257 ~p~i~ttN~~~-~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~ 332 (362)
T d1svma_ 257 PPGIVTMNEYS-VPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIV 332 (362)
T ss_dssp CCEEEEECSCC-CCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHH
T ss_pred CCCEEECCCCC-CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77246506543-00122466736886268974789999999984035788888999987368987999999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.13 E-value=5.8e-08 Score=73.84 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHC-------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46849999999999981-------------99997299995798419999999999960226889998887655432235
Q 000818 473 LIGQNIVVQSLVNTISR-------------GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFIS 539 (1268)
Q Consensus 473 LVGQe~vvqtL~naIk~-------------gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~ 539 (1268)
||||+.+.+.|.-++.+ .-.++++||.||+|||||.+|+.||+.+
T Consensus 16 VvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l---------------------- 73 (443)
T d1g41a_ 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---------------------- 73 (443)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------------------
T ss_conf 2280899999999999999886236544444565647998999988999999999873----------------------
Q ss_pred CCCCCEEEECCCCCC
Q ss_conf 998527999088874
Q 000818 540 GKSRNFMEVDGTNKK 554 (1268)
Q Consensus 540 G~s~dvIEIDaSs~~ 554 (1268)
+.+|+..|++..+
T Consensus 74 --~VPFv~~daT~fT 86 (443)
T d1g41a_ 74 --NAPFIKVEATKFT 86 (443)
T ss_dssp --TCCEEEEEGGGGC
T ss_pred --CCCEEEEECCEEE
T ss_conf --8988986255114
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.09 E-value=2.7e-10 Score=91.41 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=81.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC----CC--HHHHHHHHHHHH
Q ss_conf 729999579841999999999996022688999888765543223599852799908887----48--689999999998
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK----KG--LDRVRYILKHLS 567 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~----~G--ID~IreLIEev~ 567 (1268)
.++|||||||||||.+|+++|.+++. ..+|+.+++++. .| ...++++++.+.
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~~~----------------------~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~ 181 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEALGG----------------------KDKYATVRFGEPLSGYNTDFNVFVDDIARAML 181 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHHT----------------------TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC----------------------CCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 63888779985088999999998637----------------------99808978268544244457899999999986
Q ss_pred CCCCCCCCCCEEEEEECCCCCCH------------HHHHHHHHHHCCC--CCCEEEEEEECCCCCCCHHHH------CCE
Q ss_conf 08999999847999958999897------------9899999987079--995899997189999656654------152
Q 000818 568 AGLPSASPRFKVFVIDECHLLPS------------KTWLAFLKFLEEP--PQRVVFIFITTDIDNVPRSIQ------SRC 627 (1268)
Q Consensus 568 ~~p~~~~s~~KVIIIDEid~LS~------------~a~naLLK~LEep--p~~VVLILaTte~ekL~paL~------SRc 627 (1268)
. + .|+||||+|.+.. ...+.||..++.. ...+++|.+|| +..++++|. .|+
T Consensus 182 ~-~-------~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~r~~Rf 252 (321)
T d1w44a_ 182 Q-H-------RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVKEASRS 252 (321)
T ss_dssp H-C-------SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHHHHHHH
T ss_pred H-C-------CEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECC-CCCCCCCHHHHHHCCCCC
T ss_conf 2-6-------589741012221234567898741334515665203556678849998379-763531010233365755
Q ss_pred EE-EEECCCCHHHHHHHHH
Q ss_conf 39-9960799789999999
Q 000818 628 QK-YLFNKIKDGDIVARLR 645 (1268)
Q Consensus 628 qv-I~F~pls~eELv~iL~ 645 (1268)
.. +.+.+|+.++-..+|.
T Consensus 253 ~~~v~v~~pd~~~r~~il~ 271 (321)
T d1w44a_ 253 NSTSLVISTDVDGEWQVLT 271 (321)
T ss_dssp SCSEEEEECSSTTEEEEEE
T ss_pred CCEEECCCCCHHHHHHHHH
T ss_conf 5421158988678999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.90 E-value=2.6e-07 Score=68.89 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=117.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 98763468499999999999819999729999579841999999999996022688999888765543223---------
Q 000818 468 IFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI--------- 538 (1268)
Q Consensus 468 ~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~--------- 538 (1268)
..-++++|++..++.|.+. ..+.++++||+|+|||++++.+++.+.+.... ..|..+....
T Consensus 9 ~~~~~f~GR~~el~~l~~~-----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~ 78 (283)
T d2fnaa2 9 DNRKDFFDREKEIEKLKGL-----RAPITLVLGLRRTGKSSIIKIGINELNLPYIY-----LDLRKFEERNYISYKDFLL 78 (283)
T ss_dssp CSGGGSCCCHHHHHHHHHT-----CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEE-----EEGGGGTTCSCCCHHHHHH
T ss_pred CCHHHCCCHHHHHHHHHHC-----CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEE-----EEECCCCCCCCCCHHHHHH
T ss_conf 9722078969999999840-----59879998699982999999999977998699-----9721453333243999999
Q ss_pred ------------------C-CCCCCEE------EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH-
Q ss_conf ------------------5-9985279------9908887486899999999980899999984799995899989798-
Q 000818 539 ------------------S-GKSRNFM------EVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT- 592 (1268)
Q Consensus 539 ------------------~-G~s~dvI------EIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a- 592 (1268)
. ....... .+... ......+.++++.+... .....++++||++.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~----~~~~~~i~id~~~~~~~~~~ 153 (283)
T d2fnaa2 79 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWN-RKDRLSFANLLESFEQA----SKDNVIIVLDEAQELVKLRG 153 (283)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC------CCCHHHHHHHHHHT----CSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHH----CCCCCCCCCCHHHHHCCCCH
T ss_conf 99997544555557777777753033434432223410-01345899999998763----15555456640554133326
Q ss_pred ---HHHHHHHHCCCCCCEEEEEEECCCCC---------CC-HHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf ---99999987079995899997189999---------65-665415239996079978999999999985399999999
Q 000818 593 ---WLAFLKFLEEPPQRVVFIFITTDIDN---------VP-RSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDA 659 (1268)
Q Consensus 593 ---~naLLK~LEepp~~VVLILaTte~ek---------L~-paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeA 659 (1268)
...|....... ..+.+|++...... .. +....+...+.+.+++.+++..++...+...++..+ .
T Consensus 154 ~~~~~~l~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~--~ 230 (283)
T d2fnaa2 154 VNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D 230 (283)
T ss_dssp CCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C
T ss_pred HHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHCCHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHH--H
T ss_conf 99999999998753-11344203565067899997542100010341058862887889999999966545699999--9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999973999999999999999
Q 000818 660 LDLIALNADGSLRDAETMLDQLS 682 (1268)
Q Consensus 660 LelLA~~S~GdLRdAlnlLEkLs 682 (1268)
++.+.+.++|.+..+.-+...+.
T Consensus 231 ~~~i~~~~~G~P~~L~~~~~~~~ 253 (283)
T d2fnaa2 231 YEVVYEKIGGIPGWLTYFGFIYL 253 (283)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999996997999999999998
|
| >d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: gamma subunit species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.4e-07 Score=70.88 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCCHHHHH
Q ss_conf 53689999999998299999999999999849995999999999999999996200-------------03578977499
Q 000818 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-------------GGRSLTEAELE 766 (1268)
Q Consensus 700 VseddIfeLLdAIlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~~-------------~~r~ls~~sle 766 (1268)
+..+.+++|+++++.+|..+++..++++.+.|.+|..++..|..++|+++..+... ....+..++..
T Consensus 2 vD~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~~a~~~~~~ 81 (126)
T d1jr3a1 2 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 81 (126)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 88799999999999089999999999999859789999999999999999998630000001077889999999718999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 99999999999999943059930999999998169
Q 000818 767 RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 767 kL~rALkiLsEaDkqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
.|.+++++|.++..++|.+.++++++|+++++|..
T Consensus 82 ~L~~~~~il~~~~~~ik~s~~~r~~~Em~llrll~ 116 (126)
T d1jr3a1 82 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 116 (126)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999973189858999999999998
|
| >d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta subunit species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=8.1e-08 Score=72.74 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=87.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HCCCCCCH
Q ss_conf 999999999829999999999999984999599999999999999999620---------------------00357897
Q 000818 704 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------------------IGGRSLTE 762 (1268)
Q Consensus 704 dIfeLLdAIlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~---------------------~~~r~ls~ 762 (1268)
++|+|+++++.+|...++..++.+...|++|+.++..|.++|+.++..+.. ....+++.
T Consensus 2 ~~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (127)
T d1jr3d1 2 TPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNR 81 (127)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 88899999985999999999999988699669999999999999999887501598999997849999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHCCCCC
Q ss_conf 749999999999999999943059--93099999999816998
Q 000818 763 AELERLKHALKLLSEAEKQLRLSS--ERCTWFTATLLQLGSMH 803 (1268)
Q Consensus 763 ~slekL~rALkiLsEaDkqLKsS~--d~rl~LE~aLLkL~~~p 803 (1268)
|+..+|.+++..|.++|..+|++. ++...||.++++||+.+
T Consensus 82 ~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc~~~ 124 (127)
T d1jr3d1 82 LSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKP 124 (127)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8999999999999999999848998999999999999984803
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.25 E-value=0.00013 Score=48.58 Aligned_cols=187 Identities=12% Similarity=0.099 Sum_probs=102.0
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46420899876346849999999999981--9999729999579841999999999996022688999888765543223
Q 000818 461 LSQKYKPIFFDELIGQNIVVQSLVNTISR--GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538 (1268)
Q Consensus 461 L~eKyRP~tFdDLVGQe~vvqtL~naIk~--gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~ 538 (1268)
+..+--|..- +++|++..++.+..++.. ..-...+.+||+.|+|||++|+.+.+........
T Consensus 11 l~~~~~p~~~-~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~--------------- 74 (277)
T d2a5yb3 11 LLLGNVPKQM-TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI--------------- 74 (277)
T ss_dssp HHHTTCBCCC-CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT---------------
T ss_pred CCCCCCCCCC-CEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH---------------
T ss_conf 1146899988-623739999999999873468784089997799788899999999855655401---------------
Q ss_pred CCCCCC-EEEECCCCCCCHHHHHHHHHHHH----CC----CC-----------------CCCCCCEEEEEECCCCCCHHH
Q ss_conf 599852-79990888748689999999998----08----99-----------------999984799995899989798
Q 000818 539 SGKSRN-FMEVDGTNKKGLDRVRYILKHLS----AG----LP-----------------SASPRFKVFVIDECHLLPSKT 592 (1268)
Q Consensus 539 ~G~s~d-vIEIDaSs~~GID~IreLIEev~----~~----p~-----------------~~~s~~KVIIIDEid~LS~~a 592 (1268)
.++ ++-+..........+...+..+. .. .+ .....+-++|+|++.. ...
T Consensus 75 ---~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~--~~~ 149 (277)
T d2a5yb3 75 ---NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ--EET 149 (277)
T ss_dssp ---TBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC--HHH
T ss_pred ---CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHH--HHH
T ss_conf ---276489999368777778999999999872202202786321233699999999998446881675250667--766
Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHCCCCH
Q ss_conf 9999998707999589999718999965665415239996079978999999999985399-999999999999739999
Q 000818 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENL-NVEPDALDLIALNADGSL 671 (1268)
Q Consensus 593 ~naLLK~LEepp~~VVLILaTte~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi-~IdeeALelLA~~S~GdL 671 (1268)
+.. +... ...+|++| ....+...+...+..|.+.+++.++....+...+..... ...++....|++.++|.+
T Consensus 150 ~~~----~~~~--~srilvTT-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP 222 (277)
T d2a5yb3 150 IRW----AQEL--RLRCLVTT-RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 222 (277)
T ss_dssp HHH----HHHT--TCEEEEEE-SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred HHH----HCCC--CCEEEEEE-EHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 555----2045--75599996-4489998637887168778899799999999984776674256799999999958998
Q ss_pred HHHH
Q ss_conf 9999
Q 000818 672 RDAE 675 (1268)
Q Consensus 672 RdAl 675 (1268)
-.+.
T Consensus 223 LAl~ 226 (277)
T d2a5yb3 223 ATLM 226 (277)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=3.5e-05 Score=52.80 Aligned_cols=127 Identities=10% Similarity=0.078 Sum_probs=90.2
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 99999998199997299995798419999999999960226889998887655432235998527999088874868999
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 481 qtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~Ir 560 (1268)
+.|...+..+ +++.|||||++-.-+..+.+.+.+.+...... ...++.++ .. ..+.
T Consensus 7 ~~L~~~l~k~-l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~------------------~~~~~~~~-~~----~~~~ 62 (140)
T d1jqlb_ 7 EQLRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE------------------EHHTFSID-PN----TDWN 62 (140)
T ss_dssp GGHHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTCC------------------EEECCCCS-TT----CCHH
T ss_pred HHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCC------------------EEEEECCC-CC----CCHH
T ss_conf 9999998527-98489998482999999999999998858962------------------04665036-66----8999
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCC------CCCHHHHCCEEEEEEC
Q ss_conf 99999980899999984799995899989-7989999998707999589999718999------9656654152399960
Q 000818 561 YILKHLSAGLPSASPRFKVFVIDECHLLP-SKTWLAFLKFLEEPPQRVVFIFITTDID------NVPRSIQSRCQKYLFN 633 (1268)
Q Consensus 561 eLIEev~~~p~~~~s~~KVIIIDEid~LS-~~a~naLLK~LEepp~~VVLILaTte~e------kL~paL~SRcqvI~F~ 633 (1268)
++++.+...| +++.+++|+|++.+... ....+.|..+++.|+..+++|+.+...+ ++.+++..++.+|++.
T Consensus 63 ~l~~~~~t~s--lF~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~Cq 140 (140)
T d1jqlb_ 63 AIFSLCQAMS--LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (140)
T ss_dssp HHHHHHHCCC--TTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEECC
T ss_pred HHHHHHCCCC--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 9999970798--65686799998378798477899999998279998799998278771456519999998397489588
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.99 E-value=4.8e-05 Score=51.77 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=36.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHC---CCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9876346849999999999981---99997299995798419999999999960
Q 000818 468 IFFDELIGQNIVVQSLVNTISR---GRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 468 ~tFdDLVGQe~vvqtL~naIk~---gRia~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..|.|.-+++...+.+...+.. ...+..+|||||||||||++|+++|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 4 VNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 655769999999999999984152789997999889799889999999999865
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.00028 Score=45.97 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH
Q ss_conf 99999999999819999729999579841999999999996022688999888765543223599852799908887486
Q 000818 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGL 556 (1268)
Q Consensus 477 e~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GI 556 (1268)
+....++..++. + +..+++||||||||+++..+.+.+...... ....+.-.. ...+..
T Consensus 151 ~~Q~~A~~~al~-~---~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~-----------------~~~~I~l~A-pTgkAA 208 (359)
T d1w36d1 151 NWQKVAAAVALT-R---RISVISGGPGTGKTTTVAKLLAALIQMADG-----------------ERCRIRLAA-PTGKAA 208 (359)
T ss_dssp CHHHHHHHHHHT-B---SEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------------CCCCEEEEB-SSHHHH
T ss_pred CHHHHHHHHHHC-C---CEEEEECCCCCCCEEHHHHHHHHHHHHHHC-----------------CCCEEEEEC-CCHHHH
T ss_conf 389999999970-8---859997689887521699999999998752-----------------698289843-759999
Q ss_pred HHHHHHHHHH-HCCC--------------------------------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8999999999-8089--------------------------------999998479999589998979899999987079
Q 000818 557 DRVRYILKHL-SAGL--------------------------------PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603 (1268)
Q Consensus 557 D~IreLIEev-~~~p--------------------------------~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep 603 (1268)
+.+.+.+... .... ....-...++||||+-++.......++..+
T Consensus 209 ~~L~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~--- 285 (359)
T d1w36d1 209 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL--- 285 (359)
T ss_dssp HHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHH---
T ss_conf 99998887777645810445542013455789987631000677775436665413465332144899999999872---
Q ss_pred CCCEEEEEEECCCCCCCH
Q ss_conf 995899997189999656
Q 000818 604 PQRVVFIFITTDIDNVPR 621 (1268)
Q Consensus 604 p~~VVLILaTte~ekL~p 621 (1268)
+....+||+. ++..|++
T Consensus 286 ~~~~~lILvG-D~~QLpp 302 (359)
T d1w36d1 286 PDHARVIFLG-DRDQLAS 302 (359)
T ss_dssp CTTCEEEEEE-CTTSGGG
T ss_pred CCCCEEEEEC-CHHHCCC
T ss_conf 5999899977-7221668
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.55 E-value=0.0014 Score=40.62 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=67.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCC-CCCCCCCCCCCCCEEEECCCC-C--------CCHHH--
Q ss_conf 299995798419999999999960226889----9988876-554322359985279990888-7--------48689--
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQ----TKPCGYC-RECNDFISGKSRNFMEVDGTN-K--------KGLDR-- 558 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc~~~e~----~~PCg~C-~sC~~i~~G~s~dvIEIDaSs-~--------~GID~-- 558 (1268)
.+++.||+|+|||++++.++..+......- ....... .....+..-............ . ...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302303762566
Q ss_pred ------HHHHHHHHHCCCCCCCCCCEEEEEECCCCC---CHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCHHHHCC-
Q ss_conf ------999999998089999998479999589998---97989999998707999589999718999--965665415-
Q 000818 559 ------VRYILKHLSAGLPSASPRFKVFVIDECHLL---PSKTWLAFLKFLEEPPQRVVFIFITTDID--NVPRSIQSR- 626 (1268)
Q Consensus 559 ------IreLIEev~~~p~~~~s~~KVIIIDEid~L---S~~a~naLLK~LEepp~~VVLILaTte~e--kL~paL~SR- 626 (1268)
.+..+..+. .....|+++||++.. .......|++.+++++ ..+|+++.... .+...+..+
T Consensus 82 ~~~~~~~~~~l~~~~------~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~--~~il~~~h~~~~~~~~~~i~~~~ 153 (178)
T d1ye8a1 82 ELAIPILERAYREAK------KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPN--VNVVATIPIRDVHPLVKEIRRLP 153 (178)
T ss_dssp HHHHHHHHHHHHHHH------HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTT--SEEEEECCSSCCSHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHH------HCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCC--CEEEEEECCHHHHHHHCEEEEEE
T ss_conf 532013789999997------4099742302777310045799999998750579--78999974477898636599871
Q ss_pred -EEEEEECCCCHHHHHH
Q ss_conf -2399960799789999
Q 000818 627 -CQKYLFNKIKDGDIVA 642 (1268)
Q Consensus 627 -cqvI~F~pls~eELv~ 642 (1268)
+..|...+.+.+.+..
T Consensus 154 ~~~i~~v~~~nrd~~~~ 170 (178)
T d1ye8a1 154 GAVLIELTPENRDVILE 170 (178)
T ss_dssp TCEEEECCTTTTTTHHH
T ss_pred CCEEEEECCCCHHHHHH
T ss_conf 99999989964788999
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.45 E-value=0.00066 Score=43.19 Aligned_cols=120 Identities=16% Similarity=0.158 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH
Q ss_conf 99999999998199997299995798419999999999960226889998887655432235998527999088874868
Q 000818 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLD 557 (1268)
Q Consensus 478 ~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID 557 (1268)
.-+..|..++.+.--...++||||++|||+.++.+|++.+... ++.+.....
T Consensus 38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~------------------------vis~~N~~s---- 89 (205)
T d1tuea_ 38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA------------------------VISFVNSTS---- 89 (205)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE------------------------ECCCCCSSS----
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCE------------------------EEECCCCCC----
T ss_conf 9999999997389873189998899856899999999982887------------------------883367888----
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH-HHHHCCCC-------------CCEEEEEEECCCC---CCC
Q ss_conf 999999999808999999847999958999897989999-99870799-------------9589999718999---965
Q 000818 558 RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAF-LKFLEEPP-------------QRVVFIFITTDID---NVP 620 (1268)
Q Consensus 558 ~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naL-LK~LEepp-------------~~VVLILaTte~e---kL~ 620 (1268)
.+...+ ..+.+|+++||+-.....-.+.. ...++.-+ ....+|+++|..- .-.
T Consensus 90 -------~F~Lq~---l~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~~ 159 (205)
T d1tuea_ 90 -------HFWLEP---LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRW 159 (205)
T ss_dssp -------CGGGGG---GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSC
T ss_pred -------CCCCCC---CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf -------753665---3478699996055316778999998622897256521358861125898899728898856551
Q ss_pred HHHHCCEEEEEECCC
Q ss_conf 665415239996079
Q 000818 621 RSIQSRCQKYLFNKI 635 (1268)
Q Consensus 621 paL~SRcqvI~F~pl 635 (1268)
++|.+|..+|.|..+
T Consensus 160 ~~L~sRi~~f~F~~~ 174 (205)
T d1tuea_ 160 PYLESRITVFEFPNA 174 (205)
T ss_dssp HHHHTSCEEEECCSC
T ss_pred HHHHHEEEEEECCCC
T ss_conf 546651799887995
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=97.02 E-value=0.0094 Score=34.45 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=73.3
Q ss_pred HHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH
Q ss_conf 999999999819-9997299995798419999999999960226889998887655432235998527999088874868
Q 000818 479 VVQSLVNTISRG-RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLD 557 (1268)
Q Consensus 479 vvqtL~naIk~g-Ria~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID 557 (1268)
....|..++... .....++|+||+++||+.++.++++.+.. +..++.... ..
T Consensus 89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~-------------------------~~~~~~~~~-~f- 141 (267)
T d1u0ja_ 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF-------------------------YGCVNWTNE-NF- 141 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC-------------------------EEECCTTCS-SC-
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC-------------------------HHHCCCCCC-CC-
T ss_conf 999999997599976179999858988778999999998362-------------------------020026678-86-
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC--------------CCCCEEEEEEECCCCCC----
Q ss_conf 999999999808999999847999958999897989999998707--------------99958999971899996----
Q 000818 558 RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE--------------PPQRVVFIFITTDIDNV---- 619 (1268)
Q Consensus 558 ~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEe--------------pp~~VVLILaTte~ekL---- 619 (1268)
... ...+.+++++||+..-. .....+..++.. ..+..++|+++++....
T Consensus 142 ---------~l~---~l~~k~~~~~~e~~~~~-~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~ 208 (267)
T d1u0ja_ 142 ---------PFN---DCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGN 208 (267)
T ss_dssp ---------TTG---GGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETT
T ss_pred ---------CCC---CCCCCEEEEEECCCCCC-CHHHHHHHHCCCCCEEEECCCCCCCEEECCEEEEEECCCCCCCCCCC
T ss_conf ---------220---03798799983888530-07899998648993685320389707407708999489765245778
Q ss_pred ------CHHHHCCEEEEEECCCCH
Q ss_conf ------566541523999607997
Q 000818 620 ------PRSIQSRCQKYLFNKIKD 637 (1268)
Q Consensus 620 ------~paL~SRcqvI~F~pls~ 637 (1268)
..++.+|...|.|...-+
T Consensus 209 ~~~~~~~~~l~~R~~~~~F~~~~p 232 (267)
T d1u0ja_ 209 STTFEHQQPLQDRMFKFELTRRLD 232 (267)
T ss_dssp EEECTTHHHHHTTEEEEECCSCCC
T ss_pred CCCCCCCHHHHHHEEEEECCCCCC
T ss_conf 664300257565179987899489
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.013 Score=33.31 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=67.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-C-----C----CCCCCCCEEEECCCC-----------
Q ss_conf 729999579841999999999996022688999888765543-2-----2----359985279990888-----------
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN-D-----F----ISGKSRNFMEVDGTN----------- 552 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~-~-----i----~~G~s~dvIEIDaSs----------- 552 (1268)
.+++++||+|+|||++++.+++.+......- ..+ .|.... . + ..+....+.......
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV-DGF-YTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQ 79 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC-EEE-ECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EEE-EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6999988999719999999999999779979-999-84550122211465412343302466543001034441432231
Q ss_pred -CCCHHHHHHHHHHHHCC-CCCCCCCCEEEEEECCCCCCHH---HHHHHHHHHCCCCCCEEEEEEECCCC----CCCHHH
Q ss_conf -74868999999999808-9999998479999589998979---89999998707999589999718999----965665
Q 000818 553 -KKGLDRVRYILKHLSAG-LPSASPRFKVFVIDECHLLPSK---TWLAFLKFLEEPPQRVVFIFITTDID----NVPRSI 623 (1268)
Q Consensus 553 -~~GID~IreLIEev~~~-p~~~~s~~KVIIIDEid~LS~~---a~naLLK~LEepp~~VVLILaTte~e----kL~paL 623 (1268)
......+..+....... .........++++|+++.+... ....+...+..+ ..+++....... .+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T d2i3ba1 80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEI 157 (189)
T ss_dssp SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCHHHHHHHH
T ss_conf 10037777778899999998876218970686143333053599999999985468--6599961555775569999998
Q ss_pred HCCE--EEEEECCCCHHHHHH
Q ss_conf 4152--399960799789999
Q 000818 624 QSRC--QKYLFNKIKDGDIVA 642 (1268)
Q Consensus 624 ~SRc--qvI~F~pls~eELv~ 642 (1268)
..+. ..|.+.+...+.+..
T Consensus 158 ~~~~~~~~~~lt~~~Rd~~~~ 178 (189)
T d2i3ba1 158 RNRKDVKVFNVTKENRNHLLP 178 (189)
T ss_dssp HTTCCSEEEECCSSSGGGHHH
T ss_pred HCCCCCEEEEECHHHHHHHHH
T ss_conf 678997499978657669999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.018 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHCCCCCC---EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999998199997---299995798419999999999960226
Q 000818 481 QSLVNTISRGRIAP---VYLFQGPRGTGKTSTAKIFSAALNCVA 521 (1268)
Q Consensus 481 qtL~naIk~gRia~---ayLLyGPpGTGKTSLARiLAkaLnc~~ 521 (1268)
+...+++..++.++ .++|+|++|+|||++|+.||+.+++..
T Consensus 4 ~~~~~~~~~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~ 47 (195)
T d1x6va3 4 RNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHG 47 (195)
T ss_dssp HHHHHHHHSSSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89999997642599996999889999999999999999997447
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.0047 Score=36.73 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=67.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 999972999957984199999999999602268899988876554322---------35998527999088874868999
Q 000818 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF---------ISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 490 gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i---------~~G~s~dvIEIDaSs~~GID~Ir 560 (1268)
++.+..++|.||+|+|||+++--||..+.... .+++-...++.+. ....+.+++..+.... -...+.
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g---~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d-~~~~l~ 81 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD-SASVIF 81 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTT---CCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCC-HHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-HHHHHH
T ss_conf 99997999989999998999999999999779---94799823213666120455543433886211356877-999999
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH--HHH---HHHHHC----CCCCCEEEEEEECCCCCCCHHHHCCE----
Q ss_conf 99999980899999984799995899989798--999---999870----79995899997189999656654152----
Q 000818 561 YILKHLSAGLPSASPRFKVFVIDECHLLPSKT--WLA---FLKFLE----EPPQRVVFIFITTDIDNVPRSIQSRC---- 627 (1268)
Q Consensus 561 eLIEev~~~p~~~~s~~KVIIIDEid~LS~~a--~na---LLK~LE----epp~~VVLILaTte~ekL~paL~SRc---- 627 (1268)
+.++.+. ...+.+||||=+.++..+. .+. |.+.++ ..|..+++++..+.-..-...+..++
T Consensus 82 ~~~~~a~------~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~ 155 (211)
T d2qy9a2 82 DAIQAAK------ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG 155 (211)
T ss_dssp HHHHHHH------HTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSC
T ss_pred HHHHHHH------HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCHHHHHHHHHHCCC
T ss_conf 9999998------7699889965688763207789999999999853046686001220012357633778764421017
Q ss_pred -EEEEECCCCHHHH
Q ss_conf -3999607997899
Q 000818 628 -QKYLFNKIKDGDI 640 (1268)
Q Consensus 628 -qvI~F~pls~eEL 640 (1268)
..+-|.+++....
T Consensus 156 ~~~lIlTKlDe~~~ 169 (211)
T d2qy9a2 156 LTGITLTKLDGTAK 169 (211)
T ss_dssp CCEEEEECCTTCTT
T ss_pred CCEEEEEECCCCCC
T ss_conf 86489961278887
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.013 Score=33.41 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC-
Q ss_conf 9997299995798419999999999960226889998887655432235998527999088874868999999999808-
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG- 569 (1268)
Q Consensus 491 Ria~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~- 569 (1268)
..++.++|.||.|+|||+++--||..+.... ...-++..|.--...+++++...+.+...
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~-------------------~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~ 69 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG-------------------KSVVLAAADTFRAAAIEQLKIWGERVGATV 69 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTT-------------------CCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-------------------CCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9998999989999988999999999999779-------------------906999601334204678887764327641
Q ss_pred -CCC----------------CCCCCEEEEEECCCCCCHHH--HHHHHH---HHC----CCCCCEEEEEEECCCC
Q ss_conf -999----------------99984799995899989798--999999---870----7999589999718999
Q 000818 570 -LPS----------------ASPRFKVFVIDECHLLPSKT--WLAFLK---FLE----EPPQRVVFIFITTDID 617 (1268)
Q Consensus 570 -p~~----------------~~s~~KVIIIDEid~LS~~a--~naLLK---~LE----epp~~VVLILaTte~e 617 (1268)
... ....+.+|+||=+.+...+. .+.|.+ .++ ..|..++|++..+...
T Consensus 70 ~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~ 143 (213)
T d1vmaa2 70 ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ 143 (213)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf 03677776899878878999876999899824553301688889988887664202566650257862123484
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.61 E-value=0.0043 Score=37.03 Aligned_cols=145 Identities=13% Similarity=0.137 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99972999957984199999999999602268899988876554322359985279990888748689999999998089
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570 (1268)
Q Consensus 491 Ria~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p 570 (1268)
+.+..++|.||+|+|||+++--||..+... +....++-.|.-...++++++..-+.+....
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~-------------------g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~ 70 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKK-------------------GFKVGLVGADVYRPAALEQLQQLGQQIGVPV 70 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHT-------------------TCCEEEEECCCSSHHHHHHHHHHHHHHTCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-------------------CCCEEEEEEECCCCCHHHHHHHHCCCCCCCE
T ss_conf 999899998999999899999999999977-------------------9936999720235515678987401468422
Q ss_pred --CC----------------CCCCCEEEEEECCCCCCHH----HHHHHHHHHCCC-CCCEEEEEEECCCCCCCHHHHCCE
Q ss_conf --99----------------9998479999589998979----899999987079-995899997189999656654152
Q 000818 571 --PS----------------ASPRFKVFVIDECHLLPSK----TWLAFLKFLEEP-PQRVVFIFITTDIDNVPRSIQSRC 627 (1268)
Q Consensus 571 --~~----------------~~s~~KVIIIDEid~LS~~----a~naLLK~LEep-p~~VVLILaTte~ekL~paL~SRc 627 (1268)
.. ....+.+|+||=+.....+ ....|.++.+.. |..+.+++..+........+..++
T Consensus 71 ~~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~ 150 (211)
T d1j8yf2 71 YGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN 150 (211)
T ss_dssp ECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 30244102447899999874026773699853776763136678999999986259766899984356840677876653
Q ss_pred -----EEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -----399960799789999999999853999
Q 000818 628 -----QKYLFNKIKDGDIVARLRKISAEENLN 654 (1268)
Q Consensus 628 -----qvI~F~pls~eELv~iL~kiakkEGi~ 654 (1268)
..+-|.++++....--+-.++.+.++.
T Consensus 151 ~~~~~~~lI~TKlDet~~~G~~l~~~~~~~lP 182 (211)
T d1j8yf2 151 QASKIGTIIITKMDGTAKGGGALSAVAATGAT 182 (211)
T ss_dssp HHCTTEEEEEECTTSCSCHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 03675537886036888614998899998949
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.59 E-value=0.0077 Score=35.12 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC--C
Q ss_conf 97299995798419999999999960226889998887655432235998527999088874868999999999808--9
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG--L 570 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~--p 570 (1268)
+..++|.||+|+|||+++--||..+.... ...-++..|.--..++++++..-+.+... .
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g-------------------~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~ 66 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLG-------------------KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ 66 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTT-------------------CCEEEECCCCSSTTHHHHHHHHHHHHTCCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCC-------------------CCEEEEEECCCCCCCHHHHHHCCCCCCCEEEE
T ss_conf 77999989999988999999999999779-------------------90799981366654026676405456823896
Q ss_pred CC----------------CCCCCEEEEEECCCCCCHH--HHHHH---HHHH----CCCCCCEEEEEEECCCCCCCHHHHC
Q ss_conf 99----------------9998479999589998979--89999---9987----0799958999971899996566541
Q 000818 571 PS----------------ASPRFKVFVIDECHLLPSK--TWLAF---LKFL----EEPPQRVVFIFITTDIDNVPRSIQS 625 (1268)
Q Consensus 571 ~~----------------~~s~~KVIIIDEid~LS~~--a~naL---LK~L----Eepp~~VVLILaTte~ekL~paL~S 625 (1268)
.. ....+.+||||=+.....+ ....| .+.+ ...|..+.|++..+....-...+..
T Consensus 67 ~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~ 146 (207)
T d1okkd2 67 GPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK 146 (207)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 16774278899998999998799999717522231127788887777777653256787359999620047167899997
Q ss_pred CE-----EEEEECCCCHHH
Q ss_conf 52-----399960799789
Q 000818 626 RC-----QKYLFNKIKDGD 639 (1268)
Q Consensus 626 Rc-----qvI~F~pls~eE 639 (1268)
++ ..+-|.+++...
T Consensus 147 ~~~~~~~~~lI~TKlDet~ 165 (207)
T d1okkd2 147 FHEAVGLTGVIVTKLDGTA 165 (207)
T ss_dssp HHHHHCCSEEEEECTTSSC
T ss_pred HHHCCCCCEEEEECCCCCC
T ss_conf 5021388648983368888
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.59 E-value=0.016 Score=32.76 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 729999579841999999999996
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
..++|+|+||+|||++|+.|++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.54 E-value=0.023 Score=31.55 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCCCCCCC
Q ss_conf 3468499999999999819999729999579841999999999996022688999888765543-------223599852
Q 000818 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN-------DFISGKSRN 544 (1268)
Q Consensus 472 DLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~-------~i~~G~s~d 544 (1268)
++...+...+.+..++..+ ..++..|.|+|||.++-.++..+.... .-.|+.-. .+..-....
T Consensus 68 ~~~Lr~yQ~eav~~~~~~~----~~ll~~~tG~GKT~~a~~~~~~~~~~~------Liv~p~~~L~~q~~~~~~~~~~~~ 137 (206)
T d2fz4a1 68 EISLRDYQEKALERWLVDK----RGCIVLPTGSGKTHVAMAAINELSTPT------LIVVPTLALAEQWKERLGIFGEEY 137 (206)
T ss_dssp CCCCCHHHHHHHHHHTTTS----EEEEEESSSTTHHHHHHHHHHHSCSCE------EEEESSHHHHHHHHHHHGGGCGGG
T ss_pred CCCCCHHHHHHHHHHHHCC----CCEEEECCCCCCEEHHHHHHHHHCCCE------EEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 9984999999999999679----909995789982643776787746724------578724224899999998615511
Q ss_pred EEEECCCCC-------CCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 799908887-------4868999999999808999999847999958999897989999998707999589999718
Q 000818 545 FMEVDGTNK-------KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 545 vIEIDaSs~-------~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTt 614 (1268)
+..+.+... ...+.+....+.+ ..++.+|||||+|.+....+..++ +..+...++.|+.|
T Consensus 138 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~-------~~~~~lvIiDEaH~~~a~~~~~i~---~~~~~~~~lgLTAT 204 (206)
T d2fz4a1 138 VGEFSGRIKELKPLTVSTYDSAYVNAEKL-------GNRFMLLIFDEVHHLPAESYVQIA---QMSIAPFRLGLTAT 204 (206)
T ss_dssp EEEESSSCBCCCSEEEEEHHHHHHTHHHH-------TTTCSEEEEECSSCCCTTTHHHHH---HTCCCSEEEEEEES
T ss_pred HHHCCCCCCCCCCCCCCEEHHHHHHHHHH-------CCCCCEEEEECCEECCCHHHHHHH---HCCCCCCEEEEECC
T ss_conf 11014653210210012322555536765-------775779999898217837999998---50689848999558
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.54 E-value=0.016 Score=32.65 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 53689999999998299999999999999849995999999999999999996200035789774999999999999999
Q 000818 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAE 779 (1268)
Q Consensus 700 VseddIfeLLdAIlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALkiLsEaD 779 (1268)
++++.+-++++++..++...+...+.+++..|.+...|+.+|.+.+.. .. ..+.....+.++.++++|
T Consensus 1 vP~~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~---------~~---~i~~~~k~~i~~~la~~d 68 (91)
T d1sxjd1 1 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT---------ND---NFDTNFKNQISWLLFTTD 68 (91)
T ss_dssp CCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---------CS---SSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------CC---CCCHHHHHHHHHHHHHHH
T ss_conf 988999999999884999999999999999389999999999999976---------37---999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9943059930999999998169
Q 000818 780 KQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 780 kqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
+.|-.|.++.+.|..++.+++.
T Consensus 69 ~rL~~G~~e~lQL~~lla~i~~ 90 (91)
T d1sxjd1 69 SRLNNGTNEHIQLLNLLVKISQ 90 (91)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9998489839999999999871
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=96.52 E-value=0.013 Score=33.37 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHH---HHHHHCCCCCCEEEEEEE
Q ss_conf 9984799995899989798999---999870799958999971
Q 000818 574 SPRFKVFVIDECHLLPSKTWLA---FLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 574 ~s~~KVIIIDEid~LS~~a~na---LLK~LEepp~~VVLILaT 613 (1268)
..++.+|||||+|.+....... +++.++..+ ...+|+.|
T Consensus 92 ~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~-~~~~l~~T 133 (136)
T d1a1va1 92 GGAYDIIICDECHSTDATSILGIGTVLDQAETAG-ARLVVLAT 133 (136)
T ss_dssp GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTT-CSEEEEEE
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 4159999982555358878999999999998779-97299992
|
| >d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.36 E-value=0.024 Score=31.35 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3689999999998299999999999999-849995999999999999999996200035789774999999999999999
Q 000818 701 SEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAE 779 (1268)
Q Consensus 701 seddIfeLLdAIlskD~~~ALk~LreLl-~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALkiLsEaD 779 (1268)
.++++..+++.++.++..++...+++++ ..|.++..|+.+|.+.+.. . .++......+++.++++|
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~----------~---~~~~~~k~~ll~~la~~d 69 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN----------L---PIEEPKKVLLADKIGEYN 69 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG----------S---SSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----------C---CCCHHHHHHHHHHHHHHH
T ss_conf 919999999999849999999999999988499999999999999961----------6---999899999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9943059930999999998169
Q 000818 780 KQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 780 kqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
+.|-.|.+.++-|+.++.+++.
T Consensus 70 ~rL~~G~~e~iQL~alla~~~~ 91 (95)
T d1iqpa1 70 FRLVEGANEIIQLEALLAQFTL 91 (95)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9998689859999999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.20 E-value=0.0033 Score=37.92 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.|++|+|||++++.||+.|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9889988999988999999999949
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.13 E-value=0.0041 Score=37.20 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 97299995798419999999999960226889998887655432235998527999088874868999999999808999
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~ 572 (1268)
+..+|+.|+||+|||++|+.++..+ ++..++.........+...++...
T Consensus 14 p~liil~G~pGsGKST~a~~l~~~~--------------------------~~~~i~~D~~~~~~~~~~~~~~~l----- 62 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLVSA--------------------------GYVHVNRDTLGSWQRCVSSCQAAL----- 62 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTGGG--------------------------TCEEEEHHHHCSHHHHHHHHHHHH-----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC--------------------------CCEEECHHHHHHHHHHHHHHHHHH-----
T ss_conf 9899998999998999999999765--------------------------978976077778889999999999-----
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 9998479999589998979899999987079995899997
Q 000818 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFI 612 (1268)
Q Consensus 573 ~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILa 612 (1268)
.....||||.... ....-..++...++....+.+|..
T Consensus 63 --~~g~~vIiD~t~~-~~~~R~~~~~~a~~~~~~~~~v~l 99 (172)
T d1yj5a2 63 --RQGKRVVIDNTNP-DVPSRARYIQCAKDAGVPCRCFNF 99 (172)
T ss_dssp --HTTCCEEEESCCC-SHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred --HCCCCCEEECCCC-CHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf --7799955517679-999999999999855888799994
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=95.84 E-value=0.032 Score=30.45 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=25.4
Q ss_pred CCCCCEEEEEECCCCCCHHHHH--HHHHHHCCCCCCEEEEEEEC
Q ss_conf 9998479999589998979899--99998707999589999718
Q 000818 573 ASPRFKVFVIDECHLLPSKTWL--AFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 573 ~~s~~KVIIIDEid~LS~~a~n--aLLK~LEepp~~VVLILaTt 614 (1268)
...++.+|||||+|.++..... .++..+...+ +..+|+.|-
T Consensus 95 ~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~-~~~~l~lTA 137 (140)
T d1yksa1 95 RVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTA 137 (140)
T ss_dssp CCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTT-SCEEEEECS
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEC
T ss_conf 5464208997543346754399999999982579-999899982
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.65 E-value=0.0051 Score=36.44 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9729999579841999999999996
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
+|.++|.|++|+|||++++.||+.|
T Consensus 1 ~p~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 1 APKAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9948998899998899999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.49 E-value=0.063 Score=28.23 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
+..+++.||||+|||++|+.||+.++
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 94899989999988999999999979
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.065 Score=28.09 Aligned_cols=142 Identities=12% Similarity=0.044 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7634684999999999998199997299995798419999999999960226-------889998887655432235998
Q 000818 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA-------TDQTKPCGYCRECNDFISGKS 542 (1268)
Q Consensus 470 FdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~-------~e~~~PCg~C~sC~~i~~G~s 542 (1268)
|..--.|..++..+...+...++ ...|++|..|+|||.++-..+....... |+..........+...+...+
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~-~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~ 132 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLA-MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 132 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSC-CEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 13460488899999999854576-67089838887728999999999997689569974688767999999999872479
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCCC-------------CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 52799908887486899999999980899-------------99998479999589998979899999987079995899
Q 000818 543 RNFMEVDGTNKKGLDRVRYILKHLSAGLP-------------SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVF 609 (1268)
Q Consensus 543 ~dvIEIDaSs~~GID~IreLIEev~~~p~-------------~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVL 609 (1268)
.++..+.... ....-..+...+..... ..+..-.+|||||-|.++-...+.|.....++ ++++
T Consensus 133 ~~v~~l~~~~--~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIiDEeH~fg~kQ~~~l~~~~~~~--~~l~ 208 (233)
T d2eyqa3 133 VRIEMISRFR--SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV--DILT 208 (233)
T ss_dssp CCEEEESTTS--CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHHHHTTS--EEEE
T ss_pred CEEEECCCCC--CCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC--CEEE
T ss_conf 7797635765--31269999999967997889742023306776555463022231233257899999618899--8899
Q ss_pred EEEECCC
Q ss_conf 9971899
Q 000818 610 IFITTDI 616 (1268)
Q Consensus 610 ILaTte~ 616 (1268)
.=||.-+
T Consensus 209 ~SATPip 215 (233)
T d2eyqa3 209 LTATPIP 215 (233)
T ss_dssp EESSCCC
T ss_pred EECCHHH
T ss_conf 9655109
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.45 E-value=0.042 Score=29.55 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.||+|+|||+++-.||..+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6899989999988999999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0079 Score=35.03 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 999972999957984199999999999602
Q 000818 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 490 gRia~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
++-++.++|.||+|+|||++|+.|++.+++
T Consensus 3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~ 32 (171)
T d1knqa_ 3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHA 32 (171)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998718999899998989999999998697
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.26 E-value=0.008 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 9972999957984199999999999602
Q 000818 492 IAPVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 492 ia~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
+...++|.||+|+|||++|+.||+.++.
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~~~~ 33 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAVFNT 33 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6328999899999899999999998499
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.23 E-value=0.0081 Score=34.95 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
-+.++|.||||+|||++|+.||+.++
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89798989999998999999999979
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0079 Score=35.02 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.||+|+|||++|+.||+.|+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.77 E-value=0.1 Score=26.63 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 49999999999981999972999957984199999999999602268899988876554322359985279990888748
Q 000818 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKG 555 (1268)
Q Consensus 476 Qe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~G 555 (1268)
.+.....|..++..++ .+|+.|+.|+|||++.++|+..+.. +.+. ....+-.++......+++.+......
T Consensus 152 ~~~~~~~l~~~v~~~~---nili~G~tgSGKTT~l~al~~~i~~----~~ri-vtiEd~~El~l~~~~~~~~~~~~~~~- 222 (323)
T d1g6oa_ 152 KEQAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPK----EERI-ISIEDTEEIVFKHHKNYTQLFFGGNI- 222 (323)
T ss_dssp HHHHHHHHHHHHHHTC---CEEEEESTTSSHHHHHHHHGGGSCT----TCCE-EEEESSCCCCCSSCSSEEEEECBTTB-
T ss_pred HHHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHHHCCC----CCCE-EECCCHHHHHCCCCCCCCEECCCCCH-
T ss_conf 9999999999998378---8899940356625789998653014----5623-31132265511112454100146542-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 68999999999808999999847999958999897989999998707999
Q 000818 556 LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605 (1268)
Q Consensus 556 ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~ 605 (1268)
.+.+++..+.. .+...++|.|+- ..+++. +++.+.....
T Consensus 223 --~~~~ll~~~lR------~~pd~iivgEiR--~~ea~~-~l~a~~tGh~ 261 (323)
T d1g6oa_ 223 --TSADCLKSCLR------MRPDRIILGELR--SSEAYD-FYNVLCSGHK 261 (323)
T ss_dssp --CHHHHHHHHTT------SCCSEEEESCCC--STHHHH-HHHHHHTTCS
T ss_pred --HHHHHHHHHHC------CCCCCCCCCCCC--CHHHHH-HHHHHHHCCC
T ss_conf --49999999743------499854578667--465999-9999981698
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.61 E-value=0.017 Score=32.61 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9729999579841999999999996022
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc~ 520 (1268)
+..++|.|++|+|||++|++||+.|++.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~~ 33 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQQ 33 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7699988999999999999999998650
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.52 E-value=0.016 Score=32.75 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 29999579841999999999996
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
.++|.|++|+|||++++.||+.|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.095 Score=26.88 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
++.++|.||||+||++.|+.||+.++
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 93999979999998999999999869
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.37 E-value=0.12 Score=25.98 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 2999957984199999999999602
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
.++|.||||+|||+.|+.|++.+++
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~ 26 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGI 26 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999889999979999999999899
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.33 E-value=0.015 Score=32.98 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=22.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 729999579841999999999996
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
..++|.||+|+|||++|+.|++.+
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599998899998899999999995
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.17 E-value=0.11 Score=26.44 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=43.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCC-CEEEECCCCCCCHHHHHHHHHH
Q ss_conf 972999957984199999999999602268899988876554322------359985-2799908887486899999999
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF------ISGKSR-NFMEVDGTNKKGLDRVRYILKH 565 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i------~~G~s~-dvIEIDaSs~~GID~IreLIEe 565 (1268)
.....|+||+|+|||+++-.++........ .|-..+.-..+ ..|... +++.+.+. ..++..++++.
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~----~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~---~~E~~~~~~~~ 129 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVAQAQKAGG----TCAFIDAEHALDPVYARALGVNTDELLVSQPD---NGEQALEIMEL 129 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCS---SHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC----EEEEEECCCCCCHHHHHHHCCCCHHEEEECCC---CHHHHHHHHHH
T ss_conf 547898058765227999999999970799----89999887658999999828981237997489---99999999999
Q ss_pred HHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 980899999984799995899989
Q 000818 566 LSAGLPSASPRFKVFVIDECHLLP 589 (1268)
Q Consensus 566 v~~~p~~~~s~~KVIIIDEid~LS 589 (1268)
+.. .....+||||-+..|.
T Consensus 130 l~~-----~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 130 LVR-----SGAIDVVVVDSVAALT 148 (268)
T ss_dssp HHT-----TTCCSEEEEECTTTCC
T ss_pred HHH-----CCCCCEEEEECCCCCC
T ss_conf 986-----5897199994545455
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.12 E-value=0.13 Score=25.90 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 72999957984199999999999602
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
-.++++|.||+|||++|+.|++.++.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89999899999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.96 E-value=0.041 Score=29.63 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=23.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|+|++|+|||++|+.|++.+.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5999989999998999999999728
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.96 E-value=0.019 Score=32.07 Aligned_cols=25 Identities=40% Similarity=0.814 Sum_probs=22.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.||+|+|||++|+.|++.+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=93.78 E-value=0.14 Score=25.66 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---CCCC-----CCCCCCCCCCCCCCCC
Q ss_conf 4684999999999998199997299995798419999999999960226889---9988-----8765543223599852
Q 000818 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ---TKPC-----GYCRECNDFISGKSRN 544 (1268)
Q Consensus 473 LVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~---~~PC-----g~C~sC~~i~~G~s~d 544 (1268)
+.-++...+.+..+++.++ -++.-|.|.|||.++-.+++.+....... ..|- ..+..+..+.......
T Consensus 112 ~~~rdyQ~~av~~~l~~~~----~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~ 187 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRR----RILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSE----EEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CCCCHHHHHHHHHHHHCCC----CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 6564677787799985497----216887115830788999998653256328999767225789999998750365345
Q ss_pred EEEECCCCCCC------HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEEEEC
Q ss_conf 79990888748------689999999998089999998479999589998979899999987079-99589999718
Q 000818 545 FMEVDGTNKKG------LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-PQRVVFIFITT 614 (1268)
Q Consensus 545 vIEIDaSs~~G------ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep-p~~VVLILaTt 614 (1268)
+..+....... ..-+......+...+......+.+||+||||.+....+..+ +... +...+|=|++|
T Consensus 188 ~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~~~~~~~f~~VIvDEaH~~~a~~~~~i---l~~~~~~~~rlGlTaT 261 (282)
T d1rifa_ 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSI---ISGLNNCMFKFGLSGS 261 (282)
T ss_dssp EEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHH---TTTCTTCCEEEEECSS
T ss_pred CEEECCEECCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHH---HHHCCCCCEEEEEEEE
T ss_conf 3034020025652332326999864032220210057887999989978883209999---9746188969999961
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.78 E-value=0.16 Score=25.17 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=47.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----------CCCCCCCCCCCCCCEEEECCCCCCC---------
Q ss_conf 299995798419999999999960226889998887----------6554322359985279990888748---------
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY----------CRECNDFISGKSRNFMEVDGTNKKG--------- 555 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~----------C~sC~~i~~G~s~dvIEIDaSs~~G--------- 555 (1268)
..|+.+|.|+|||.++-.++........ ...... +..+..+.......+..........
T Consensus 25 n~lv~~pTGsGKT~i~~~~~~~~~~~~~--~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 102 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYG--GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA 102 (200)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSC--SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCC
T ss_conf 9699918997288999999999997069--81899737057777889999986335542013420366456777765114
Q ss_pred ---HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH
Q ss_conf ---6899999999980899999984799995899989798
Q 000818 556 ---LDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT 592 (1268)
Q Consensus 556 ---ID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a 592 (1268)
+.....+....... ........+||+||+|.+....
T Consensus 103 ~i~i~t~~~~~~~~~~~-~~~~~~~~~vIiDE~H~~~~~~ 141 (200)
T d1wp9a1 103 KVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNY 141 (200)
T ss_dssp SEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTC
T ss_pred CCCCCCCCHHHHHHHHH-HHHCCCCCEEEEEEHHHHHCCH
T ss_conf 22234320257787631-3311566618998621131221
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.74 E-value=0.16 Score=25.12 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
++.++|.||||+||++.|+.||+.++
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 82899989999987999999999869
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.034 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
....+|+||+|+|||+++-.++....
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 35899805777478999999999987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.66 E-value=0.029 Score=30.76 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.||+|+|||++++.||+.++
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 8899982899988999999999858
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.64 E-value=0.13 Score=25.75 Aligned_cols=122 Identities=20% Similarity=0.133 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--CCCCC-----CCCCCCCCCCCCCCCE
Q ss_conf 4684999999999998199997299995798419999999999960226889--99888-----7655432235998527
Q 000818 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ--TKPCG-----YCRECNDFISGKSRNF 545 (1268)
Q Consensus 473 LVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~--~~PCg-----~C~sC~~i~~G~s~dv 545 (1268)
=-.|..++..+.+.+..+.. ..-||+|..|+|||.++-..+.......... ..|-- .......++...+..+
T Consensus 85 T~~Q~~ai~ei~~d~~~~~~-m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v 163 (264)
T d1gm5a3 85 TNAQKRAHQEIRNDMISEKP-MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHV 163 (264)
T ss_dssp CHHHHHHHHHHHHHHHSSSC-CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCE
T ss_pred CCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 80378889999987623675-31566635355665999999999885135505874047665789999988620123121
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCCC-------------CCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99908887486899999999980899-------------99998479999589998979899999
Q 000818 546 MEVDGTNKKGLDRVRYILKHLSAGLP-------------SASPRFKVFVIDECHLLPSKTWLAFL 597 (1268)
Q Consensus 546 IEIDaSs~~GID~IreLIEev~~~p~-------------~~~s~~KVIIIDEid~LS~~a~naLL 597 (1268)
..+.+.. ...+-.++...+..... ..+..-.+|||||-|.++...-+.|.
T Consensus 164 ~~l~~~~--~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~LglviiDEqH~fgv~Qr~~l~ 226 (264)
T d1gm5a3 164 ALLIGAT--TPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALM 226 (264)
T ss_dssp EECCSSS--CHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCC
T ss_pred EEECCCC--CHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 1101101--36999999999977997999965388548987455622563242100243479999
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.51 E-value=0.18 Score=24.86 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3689999999998299999999999999-849995999999999999999996200035789774999999999999999
Q 000818 701 SEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAE 779 (1268)
Q Consensus 701 seddIfeLLdAIlskD~~~ALk~LreLl-~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALkiLsEaD 779 (1268)
..+++-++++.++.++..+|...+.+++ +.|.++..|+.+|.+.+.. ... .+.......++.++++|
T Consensus 2 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~----------~~~--~~~~~k~~ll~~la~~e 69 (95)
T d1sxjc1 2 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILED----------YEL--QNEETRVHLLTKLADIE 69 (95)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTT----------SCC--SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----------CCC--CCHHHHHHHHHHHHHHH
T ss_conf 889999999999809999999999999998599999999999999987----------579--98999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9943059930999999998169
Q 000818 780 KQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 780 kqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
+.|-.|.+..+-|..++-.++.
T Consensus 70 ~rL~~G~~e~lQL~~lla~~~~ 91 (95)
T d1sxjc1 70 YSISKGGNDQIQGSAVIGAIKA 91 (95)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9998689818789999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.14 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|+||||+|||+++..|+....
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~~~~ 62 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCVTAQ 62 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999988998878899999999997
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.058 Score=28.50 Aligned_cols=27 Identities=44% Similarity=0.742 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 997299995798419999999999960
Q 000818 492 IAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 492 ia~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
++|.+.+.||||+||+|.|+.||+.++
T Consensus 2 ~~piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 2 IAPVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 998899779998898999999999969
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.09 E-value=0.2 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 2999957984199999999999602
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
-++|.||||+|||+.++.||+.++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~ 28 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHA 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999899999989999999999699
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.036 Score=30.06 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 972999957984199999999999602
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
.+.++|.||||+|||+.|+.|++.++.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 728999899999989999999998599
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.91 E-value=0.21 Score=24.29 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCCCCEEEEEECCCCCCHH----HHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9998479999589998979----8999999870799958999971
Q 000818 573 ASPRFKVFVIDECHLLPSK----TWLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 573 ~~s~~KVIIIDEid~LS~~----a~naLLK~LEepp~~VVLILaT 613 (1268)
......+||+||+|.+... ....++..+...+..+.+|+.+
T Consensus 135 ~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lS 179 (202)
T d2p6ra3 135 WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179 (202)
T ss_dssp GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 110322224658777535543137999999998659998389981
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.61 E-value=0.049 Score=29.04 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=22.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.||||+|||+.|+.|++.++
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2999988999998999999999879
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.059 Score=28.41 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 972999957984199999999999602
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
-|++.|.|++|+|||++++.|++++..
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 788999918999899999999999997
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.22 E-value=0.26 Score=23.58 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=67.5
Q ss_pred HHHHHHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC-----
Q ss_conf 999999998-19999729999579841999999999996022688999888765543223599852799908887-----
Q 000818 480 VQSLVNTIS-RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNK----- 553 (1268)
Q Consensus 480 vqtL~naIk-~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~----- 553 (1268)
...|...+. ....++.+=+.||||.|||++...|.+.+..... ...++.+|+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~-------------------~vaViavDpss~~~gg~ 97 (323)
T d2qm8a1 37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH-------------------KVAVLAVDPSSTRTGGS 97 (323)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-------------------CEEEEEECGGGGSSCCC
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-------------------CEEEEECCCCCHHHHHC
T ss_conf 99999986330698159861179988899999999998763687-------------------51344346554787750
Q ss_pred ------------------------CC-H----HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf ------------------------48-6----899999999980899999984799995899989798999999870799
Q 000818 554 ------------------------KG-L----DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604 (1268)
Q Consensus 554 ------------------------~G-I----D~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp 604 (1268)
++ . ..+++.+.-+.. .++-++||+-+...-.+.. ... ..
T Consensus 98 llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~------~g~d~iiiETVG~gq~e~~---~~~---~~ 165 (323)
T d2qm8a1 98 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEA------AGFDVILVETVGVGQSETA---VAD---LT 165 (323)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHH------TTCCEEEEEECSSSSCHHH---HHT---TS
T ss_pred CCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC------CCCCEEEEEEHHHHHHHHH---HHC---CC
T ss_conf 64101337887503440112665345331106778999976414------8998589863233321466---533---66
Q ss_pred CCEEEEEEECCCC---CCCHHHHCCEEEEEECCCCH
Q ss_conf 9589999718999---96566541523999607997
Q 000818 605 QRVVFIFITTDID---NVPRSIQSRCQKYLFNKIKD 637 (1268)
Q Consensus 605 ~~VVLILaTte~e---kL~paL~SRcqvI~F~pls~ 637 (1268)
..+++++.....+ .+.+.+...+..|.+++.+.
T Consensus 166 D~~v~v~~p~~GD~iQ~~k~gilE~aDi~vvNKaD~ 201 (323)
T d2qm8a1 166 DFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADD 201 (323)
T ss_dssp SEEEEEECSCC------CCTTHHHHCSEEEEECCST
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHEEEEECCCC
T ss_conf 548998614324556563234765402046754245
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.96 E-value=0.28 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
.-++|.||||+||++.|+.||+.++
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 3899989999988999999999869
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.1 Score=26.71 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCEEEEEECCCC-CCHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 9847999958999-8979899999987079995899997189999
Q 000818 575 PRFKVFVIDECHL-LPSKTWLAFLKFLEEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 575 s~~KVIIIDEid~-LS~~a~naLLK~LEepp~~VVLILaTte~ek 618 (1268)
.+.+|+++||+-. |.......+++.|.+......+|++|.+.+.
T Consensus 156 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 200 (241)
T d2pmka1 156 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 200 (241)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 165135564776555989999999999998589989999788999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.49 E-value=0.15 Score=25.48 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9729999579841999999999996
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
.....|+||+|+|||+++-.++...
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 3369996488748899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.43 E-value=0.08 Score=27.44 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99995798419999999999960
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAkaLn 518 (1268)
+++.||||+|||+.|+.||+.++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.32 E-value=0.11 Score=26.38 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 729999579841999999999996022
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~ 520 (1268)
..++|.|++|+|||++++.|++.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 889998999989899999999999876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.21 E-value=0.29 Score=23.16 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCC-CCE-EEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999999981999-972-9999579841999999999996022
Q 000818 478 IVVQSLVNTISRGRI-APV-YLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 478 ~vvqtL~naIk~gRi-a~a-yLLyGPpGTGKTSLARiLAkaLnc~ 520 (1268)
..++.|...+...+. .+. +-+.||+|+|||++|+.|+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~ 49 (198)
T d1rz3a_ 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (198)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999985267998899978988789999999999983634
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.02 E-value=0.092 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 2999957984199999999999602
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
.++|.||||+|||+.|+.||+.++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~ 26 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGT 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999889999879999999998799
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.02 E-value=0.34 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=17.0
Q ss_pred CEEEEECCCCCHHHHHH-HHHHHHH
Q ss_conf 72999957984199999-9999996
Q 000818 494 PVYLFQGPRGTGKTSTA-KIFSAAL 517 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLA-RiLAkaL 517 (1268)
..+|+.|+||||||+++ ..++..+
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9989996288438999999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.93 E-value=0.34 Score=22.64 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=69.1
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC--C-CCCCCCCCCCCCCC
Q ss_conf 64208998763468499999999999819999729999579841999999999996022688--9-99888765543223
Q 000818 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD--Q-TKPCGYCRECNDFI 538 (1268)
Q Consensus 462 ~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e--~-~~PCg~C~sC~~i~ 538 (1268)
.....+..|+++--....++.|.+.+...+ ..+||.||.|.|||++...+...++..... . ..|.- ..+
T Consensus 129 ~~~~~~~~l~~LG~~~~~~~~l~~l~~~~~--GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE-----~~~- 200 (401)
T d1p9ra_ 129 DKNATRLDLHSLGMTAHNHDNFRRLIKRPH--GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE-----FDI- 200 (401)
T ss_dssp ETTTTCCCGGGSCCCHHHHHHHHHHHTSSS--EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC-----SCC-
T ss_pred CCCCCCHHHHHHCCCHHHHHHHHHHHHHHH--CEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC-----CCC-
T ss_conf 123320014430135777899999986410--548987678777447799986662578746999626743-----456-
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 59985279990888748689999999998089999998479999589998979899999987079
Q 000818 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603 (1268)
Q Consensus 539 ~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEep 603 (1268)
.+..-++++.... ..+...+..+... ..-||+|.|+--. ....+.+..-..+
T Consensus 201 --~~~~q~~v~~~~~---~~~~~~l~~~lR~------dPDvi~igEiRd~--~ta~~a~~aa~tG 252 (401)
T d1p9ra_ 201 --DGIGQTQVNPRVD---MTFARGLRAILRQ------DPDVVMVGEIRDL--ETAQIAVQASLTG 252 (401)
T ss_dssp --SSSEEEECBGGGT---BCHHHHHHHHGGG------CCSEEEESCCCSH--HHHHHHHHHHHTT
T ss_pred --CCCCEEEECCCCC---CCHHHHHHHHHHH------CCCEEEECCCCCH--HHHHHHHHHHHCC
T ss_conf --7887026558767---7999999999841------3888984576875--9999999997249
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.29 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 729999579841999999999996
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
..++|+||||+|||+++-.|+...
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998389998899999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.70 E-value=0.09 Score=27.03 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999998199997299995798419999999999960
Q 000818 483 LVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 483 L~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
....+...+ +..+.|+|.+|+|||++|+.|++.+.
T Consensus 15 ~r~~~~~~k-g~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 15 ERTELRNQR-GLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHHHHHTSS-CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999985899-86999989999998999999998877
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.51 E-value=0.096 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
.-++|.||||+|||+.++.||+.++
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1699988999987999999999979
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=90.26 E-value=0.085 Score=27.24 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=27.9
Q ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 847999958999-8979899999987079995899997189999
Q 000818 576 RFKVFVIDECHL-LPSKTWLAFLKFLEEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 576 ~~KVIIIDEid~-LS~~a~naLLK~LEepp~~VVLILaTte~ek 618 (1268)
+.+|+|+||+-. |.......+++.|........+|++|.+...
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~ 215 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 215 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 99899983765447977999999999987538889999689999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.94 E-value=0.12 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++|.|++|+|||++++.|++.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.79 E-value=0.22 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 299995798419999999999960
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
.+.+-||+|+||+|.|+.||+.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.79 E-value=0.42 Score=21.96 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7299995798419999999999960
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
..++++||||+|||+++-.|+....
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999985898988999999999863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.13 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 2999957984199999999999602
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
.++|.||||.|||+.++.||+.++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999879999989999999998699
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=89.31 E-value=0.18 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 972999957984199999999999602
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
+..+-+.||.|+|||+++++++..+..
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~gl~~p 67 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITRFYDI 67 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999999999998599999998621688
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.44 E-value=0.52 Score=21.29 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 972999957984199999999999602
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
+..+.+.||.|+|||++++++...+..
T Consensus 40 Ge~vaivG~sGsGKSTLl~li~gl~~p 66 (251)
T d1jj7a_ 40 GEVTALVGPNGSGKSTVAALLQNLYQP 66 (251)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 989999999998499999998614378
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=87.67 E-value=0.58 Score=20.95 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHHHHHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999998-19999729999579841999999999996022
Q 000818 480 VQSLVNTIS-RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 480 vqtL~naIk-~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~ 520 (1268)
...|...+. ...-++.+=+.||||.|||++...|+..+...
T Consensus 40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999865316983289743899998999999999999756
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=87.58 E-value=0.58 Score=20.91 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=52.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCC-CHHHH-HHHHHHHHCCCC
Q ss_conf 299995798419999999999960226889998887655-432235998527999088874-86899-999999980899
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE-CNDFISGKSRNFMEVDGTNKK-GLDRV-RYILKHLSAGLP 571 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~s-C~~i~~G~s~dvIEIDaSs~~-GID~I-reLIEev~~~p~ 571 (1268)
-++|.|++++|||++...|...=.. .....| +.... ...........+..++..... ..+.. ...+.......
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~- 78 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREAA--IVTDIA-GTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI- 78 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCS--CCCSST-TCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE--EEECCC-CCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
T ss_conf 9999899999899999999688866--751246-642204765320268235413653212246520247899999998-
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 9999847999958999897989999998707999589999718999
Q 000818 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 572 ~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~e 617 (1268)
..+..-++++|............+..+++.......+|++.|..+
T Consensus 79 -~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 79 -EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp -HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred -HHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf -741332011025654203455544455542014101020465444
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.49 E-value=0.59 Score=20.88 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=54.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCC-------CCCCCCCCCCCCEEEECCCCCCCHHHH-----
Q ss_conf 72999957984199999999999602268899--9888765-------543223599852799908887486899-----
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQT--KPCGYCR-------ECNDFISGKSRNFMEVDGTNKKGLDRV----- 559 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~--~PCg~C~-------sC~~i~~G~s~dvIEIDaSs~~GID~I----- 559 (1268)
..++...|.|+|||.+.-...-.......... --|.... .+..+.......+....+.... .++.
T Consensus 43 ~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~l~~ 121 (208)
T d1hv8a1 43 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAI-YPQIKALKN 121 (208)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCH-HHHHHHHHT
T ss_pred CCEEEECHHCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCH-HHHHHHCCC
T ss_conf 9746441003444400203332111124675069984033322033455666503677079985289786-999986089
Q ss_pred --------HHHHHHHHCCCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf --------99999998089999998479999589998-9798999999870799958999971
Q 000818 560 --------RYILKHLSAGLPSASPRFKVFVIDECHLL-PSKTWLAFLKFLEEPPQRVVFIFIT 613 (1268)
Q Consensus 560 --------reLIEev~~~p~~~~s~~KVIIIDEid~L-S~~a~naLLK~LEepp~~VVLILaT 613 (1268)
..+.+.+.... .....-+.++|||+|.+ .......+.++++..+....+|+.+
T Consensus 122 ~~IlV~TP~~l~~~l~~~~-~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~S 183 (208)
T d1hv8a1 122 ANIVVGTPGRILDHINRGT-LNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFS 183 (208)
T ss_dssp CSEEEECHHHHHHHHHTTC-SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred CCEEEECHHHHHHHHHCCC-CCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9999988699999997699-7766686999988487610887177999998589988599997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.40 E-value=0.6 Score=20.84 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
....+++||||+|||+++..+|..+.
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 84999991899999999999999998
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.62 Score=20.70 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=54.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC-------CCC-----CCCCCCCCCCCCCCCEEEECCCCC--------
Q ss_conf 729999579841999999999996022688999-------888-----765543223599852799908887--------
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCVATDQTK-------PCG-----YCRECNDFISGKSRNFMEVDGTNK-------- 553 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~-------PCg-----~C~sC~~i~~G~s~dvIEIDaSs~-------- 553 (1268)
..++...|.|+|||.+.-.-.-... ...... |.. .+..|..+..........+.....
T Consensus 50 ~dvl~~a~TGsGKTlayllp~l~~i--~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (218)
T d2g9na1 50 YDVIAQAQSGTGKTATFAISILQQI--ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 127 (218)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC--CTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSS
T ss_pred CCEEEECCCCHHHHHHHHHHHHHEE--CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 9889972562544554331022200--03666751899824511235677777651244321687630245306778887
Q ss_pred --C-------CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH-HHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf --4-------86899999999980899999984799995899989798-999999870799958999971899
Q 000818 554 --K-------GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT-WLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 554 --~-------GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a-~naLLK~LEepp~~VVLILaTte~ 616 (1268)
. ....+..++.. .. .....-+.++|||+|.|.... .+.+...++..|.+..+|+.+...
T Consensus 128 ~~~~~~IvV~TP~rl~~~l~~---~~-~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 128 QMEAPHIIVGTPGRVFDMLNR---RY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp SSCCCSEEEECHHHHHHHHHT---TS-SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred HCCCCEEEEECCHHHHHHHHC---CC-CCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 648877999678157778862---88-3246534898640210212760899999999689998699998059
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=0.65 Score=20.55 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 972999957984199999999999602
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALNC 519 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLnc 519 (1268)
....+|+|++|+|||+++-.+|..+..
T Consensus 29 g~~~~i~G~~G~GKS~l~l~la~~ia~ 55 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQLAAQIAG 55 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 958999928999899999999999976
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.55 E-value=0.49 Score=21.46 Aligned_cols=88 Identities=10% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH-HHHHHCC
Q ss_conf 999729999579841999999999996022688999888765543223599852799908887486899999-9999808
Q 000818 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI-LKHLSAG 569 (1268)
Q Consensus 491 Ria~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~IreL-IEev~~~ 569 (1268)
+.+-.++|.|+=|.|||+++|.+++.+..... -..|...- ++.+.. ....++-+|.--....+++.++ +++..
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~-V~SPTF~l--~~~Y~~-~~~~i~H~DlYRl~~~~El~~lg~~e~~-- 104 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGN-VKSPTYTL--VEEYNI-AGKMIYHFDLYRLADPEELEFMGIRDYF-- 104 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSC-CCCCTTTC--EEEEEE-TTEEEEEEECTTCSCTTHHHHSTHHHHH--
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCEEE--EEEECC-CCCEEEEEEEECCCCHHHHHHCCCHHHH--
T ss_conf 99829999668776588999998764223466-67875378--876305-7852899997515881354547755674--
Q ss_pred CCCCCCCCEEEEEECCCCCC
Q ss_conf 99999984799995899989
Q 000818 570 LPSASPRFKVFVIDECHLLP 589 (1268)
Q Consensus 570 p~~~~s~~KVIIIDEid~LS 589 (1268)
....|++|+-.+.+.
T Consensus 105 -----~~~~i~~IEWpe~~~ 119 (158)
T d1htwa_ 105 -----NTDSICLIEWSEKGQ 119 (158)
T ss_dssp -----SSSCEEEEESGGGGT
T ss_pred -----CCCCEEEEECCHHHH
T ss_conf -----669789999930344
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.44 E-value=0.67 Score=20.47 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 729999579841999999999996
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
..++|.||.|+||+++.+.|.+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 099999999999999999998639
|
| >d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.04 E-value=0.7 Score=20.33 Aligned_cols=79 Identities=8% Similarity=0.132 Sum_probs=62.9
Q ss_pred HHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 98299999999999999-84999599999999999999999620003578977499999999999999999430599309
Q 000818 712 AMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCT 790 (1268)
Q Consensus 712 IlskD~~~ALk~LreLl-~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALkiLsEaDkqLKsS~d~rl 790 (1268)
+...+..+|+..+.+++ +.|.++.+|+.+|.+.+.. ...++.......++.++++++.|-.|.+..+
T Consensus 10 l~~~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~~------------~~~~~e~~k~~il~~la~~~~rl~~G~~e~l 77 (92)
T d1sxjb1 10 LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKN------------LAQVKESVRLEMIKEIGLTHMRILEGVGTYL 77 (92)
T ss_dssp HSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHT------------CTTSCHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9839999999999999998599999999999999987------------1553579999999999999999982799288
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999981699
Q 000818 791 WFTATLLQLGSM 802 (1268)
Q Consensus 791 ~LE~aLLkL~~~ 802 (1268)
-|..++.+++.+
T Consensus 78 QL~~lla~i~~i 89 (92)
T d1sxjb1 78 QLASMLAKIHKL 89 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999987
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.66 E-value=0.72 Score=20.20 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=49.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99995798419999999999960226889998887655--4322359985279990888748689999999998089999
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE--CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~s--C~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~ 573 (1268)
+++.|.+|+|||+++..|...- ..+...|-..... ......+....+..+|.+. -+....+......
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g---~~~~~~~~~~~~~----- 77 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKGQ---FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG---QERYHSLAPMYYR----- 77 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC---CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECC---SGGGGGGHHHHHT-----
T ss_pred EEEECCCCCCHHHHHHHHHHCC---CCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCC---CHHHHHHHHHHHH-----
T ss_conf 9999999949899999998598---8854344202200000000021478777415787---3110054799860-----
Q ss_pred CCCCEEEEEECCCCCCHHHHHHH-HHHHCCCCCCEEEEEEECCCC
Q ss_conf 99847999958999897989999-998707999589999718999
Q 000818 574 SPRFKVFVIDECHLLPSKTWLAF-LKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 574 ~s~~KVIIIDEid~LS~~a~naL-LK~LEepp~~VVLILaTte~e 617 (1268)
.+..-|+++|-.+.-+-.....+ ....+.....+.+|++.|..+
T Consensus 78 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D 122 (170)
T d1r2qa_ 78 GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 866589973250466778788876433203689845986324124
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.49 E-value=0.41 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9729999579841999999999996
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAAL 517 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaL 517 (1268)
+..++|.||+|+||+++++.|.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.8 Score=19.89 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=47.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 999957984199999999999602268899988876554--322359985279990888748689999999998089999
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC--NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC--~~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~ 573 (1268)
+++.|++|+|||+++..+... .......|....... .....+....+..+|... -+....+......
T Consensus 6 ivvvG~~~vGKTsli~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g---~~~~~~~~~~~~~----- 74 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG---QESFRSITRSYYR----- 74 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS---CCCC-----CCSSEEEEEEEETTEEEEEEEECCTT---GGGTSCCCHHHHT-----
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCEEECCCEEEEEEEEEEEEEEEECCCC---CCCHHHHHHHHHH-----
T ss_conf 999999993999999999629---99987566411011013321301688787641468---6322467788740-----
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH----HHCCCCCCEEEEEEECCCC
Q ss_conf 9984799995899989798999999----8707999589999718999
Q 000818 574 SPRFKVFVIDECHLLPSKTWLAFLK----FLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 574 ~s~~KVIIIDEid~LS~~a~naLLK----~LEepp~~VVLILaTte~e 617 (1268)
.+..-|+++|=.+. ..++.+.+ ..+.......+|++.|..+
T Consensus 75 ~~d~~ilv~d~~~~---~sf~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (173)
T d2a5ja1 75 GAAGALLVYDITRR---ETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119 (173)
T ss_dssp TCSEEEEEEETTCH---HHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred CCCEEEEEEEECCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 46789999752584---8877678889999985799985999952775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=84.47 E-value=0.81 Score=19.82 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9972999957984199999999999
Q 000818 492 IAPVYLFQGPRGTGKTSTAKIFSAA 516 (1268)
Q Consensus 492 ia~ayLLyGPpGTGKTSLARiLAka 516 (1268)
.+..++|+|++|+|||+++..++..
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9839999947999999999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.42 E-value=0.39 Score=22.25 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97299995798419999999999960
Q 000818 493 APVYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 493 a~ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
...++|+|++|+|||+++..+|..+.
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 85999991799998999999999998
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.35 E-value=0.37 Score=22.38 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=18.0
Q ss_pred EEEECCCCCHHHHHHHHHHH
Q ss_conf 99995798419999999999
Q 000818 496 YLFQGPRGTGKTSTAKIFSA 515 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAk 515 (1268)
++|.|++|+|||+++..|..
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.17 E-value=0.45 Score=21.77 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99995798419999999999960
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAkaLn 518 (1268)
++|.||+|+||+++++.|++...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.10 E-value=0.84 Score=19.71 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHH-HHHHHHCCCCC
Q ss_conf 2999957984199999999999602268899988-876554322359985279990888748689999-99999808999
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPC-GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRY-ILKHLSAGLPS 572 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PC-g~C~sC~~i~~G~s~dvIEIDaSs~~GID~Ire-LIEev~~~p~~ 572 (1268)
.++|.|++|+|||++...|...-.. . ..|. +.......+.......+..++... .+.++. .......
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~---~-~~~t~~~~~~~~~~~~~~~~~~~~~d~~g---~~~~~~~~~~~~~~---- 70 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYR---D-TQTSITDSSAIYKVNNNRGNSLTLIDLPG---HESLRFQLLDRFKS---- 70 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC---C-BCCCCSCEEEEEECSSTTCCEEEEEECCC---CHHHHHHHHHHHGG----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---C-CCCCEEEEEEEEEEEEEEEEEEEEEECCC---CCCCCCHHHHHHHH----
T ss_conf 8999999998989999999809987---6-42870278999999645435444420211---23433015666554----
Q ss_pred CCCCCEEEEEECCCCCC--HHHHHHHHHHH---CCCCCCEEEEEEECCCCC
Q ss_conf 99984799995899989--79899999987---079995899997189999
Q 000818 573 ASPRFKVFVIDECHLLP--SKTWLAFLKFL---EEPPQRVVFIFITTDIDN 618 (1268)
Q Consensus 573 ~~s~~KVIIIDEid~LS--~~a~naLLK~L---Eepp~~VVLILaTte~ek 618 (1268)
.+..-++++|-.+... ......|...+ ......+.|+++.|..+.
T Consensus 71 -~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl 120 (207)
T d2fh5b1 71 -SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120 (207)
T ss_dssp -GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred -HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf -30556347776665345999999999999768875158947999988546
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.48 E-value=0.48 Score=21.53 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 299995798419999999999960
Q 000818 495 VYLFQGPRGTGKTSTAKIFSAALN 518 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAkaLn 518 (1268)
.++|.||+|+||+++++.|++...
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.19 E-value=0.91 Score=19.45 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=48.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 9999579841999999999996022688999888765-543223-59985279990888748689999999998089999
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR-ECNDFI-SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~-sC~~i~-~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~ 573 (1268)
++|.|++|+|||+++..|...- ......|..... ....+. .+....+..+|-+. .+....+..... .
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~---~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G---~e~~~~~~~~~~-----~ 77 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT---YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG---QERFRTITSSYY-----R 77 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC---CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTT---TTTTTCCCGGGG-----T
T ss_pred EEEECCCCCCHHHHHHHHHHCC---CCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCC---CHHHHHHHHHHH-----C
T ss_conf 9999999909899999996198---8887288543257899999965789999998998---543578999983-----2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEEECCCC
Q ss_conf 998479999589998979899999987-07999589999718999
Q 000818 574 SPRFKVFVIDECHLLPSKTWLAFLKFL-EEPPQRVVFIFITTDID 617 (1268)
Q Consensus 574 ~s~~KVIIIDEid~LS~~a~naLLK~L-Eepp~~VVLILaTte~e 617 (1268)
.+..-|+++|--+.-+-.....+...+ +.....+.+|++.|..+
T Consensus 78 ~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (194)
T d2bcgy1 78 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 587899999676234456676644556640467753999972145
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.17 E-value=0.91 Score=19.44 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=49.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99995798419999999999960226889998887-65543223-59985279990888748689999999998089999
Q 000818 496 YLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY-CRECNDFI-SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~-C~sC~~i~-~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~ 573 (1268)
++|.|.+|+|||++.+.|...-. .+...|... -.....+. .+....+..+|.+. -+....+..... .
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~~f---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G---~e~~~~~~~~~~-----~ 76 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG---QERFRSITQSYY-----R 76 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC---CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECC---SGGGHHHHGGGS-----T
T ss_pred EEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCCCEEEEEEEEECCEEEEEEEEECCC---CHHHHHHHHHHH-----H
T ss_conf 99999999198999999972999---876466554237899999999999999998998---543588999997-----4
Q ss_pred CCCCEEEEEECCCCCCHHHHH-HHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 998479999589998979899-99998707999589999718999
Q 000818 574 SPRFKVFVIDECHLLPSKTWL-AFLKFLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 574 ~s~~KVIIIDEid~LS~~a~n-aLLK~LEepp~~VVLILaTte~e 617 (1268)
.+..-++++|-.+.-+-.... .+....+.....+.+|++.|..+
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D 121 (171)
T d2ew1a1 77 SANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121 (171)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 326688842214320011245665542013346356899996214
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.80 E-value=0.93 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 299995798419999999999
Q 000818 495 VYLFQGPRGTGKTSTAKIFSA 515 (1268)
Q Consensus 495 ayLLyGPpGTGKTSLARiLAk 515 (1268)
-+++.|.+|+|||++++.|..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.49 E-value=0.75 Score=20.11 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 729999579841999999999996022
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~ 520 (1268)
..+.|.|+.|+|||+.++.|++.|.+.
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~ 30 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAA 30 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 599998998889999999999999877
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.76 E-value=0.72 Score=20.22 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 729999579841999999999996022
Q 000818 494 PVYLFQGPRGTGKTSTAKIFSAALNCV 520 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTSLARiLAkaLnc~ 520 (1268)
.++-+.|++|+|||+++..|+++|...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=81.72 E-value=1 Score=19.06 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHH--HHHH-HHCCCCCCEEEEEEECCCC
Q ss_conf 9998479999589998979899--9999-8707999589999718999
Q 000818 573 ASPRFKVFVIDECHLLPSKTWL--AFLK-FLEEPPQRVVFIFITTDID 617 (1268)
Q Consensus 573 ~~s~~KVIIIDEid~LS~~a~n--aLLK-~LEepp~~VVLILaTte~e 617 (1268)
...+..++||||+|.+...... .+++ ....+ ..-++.++.+.+.
T Consensus 97 ~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~-~~~~v~~SAT~~~ 143 (305)
T d2bmfa2 97 RVPNYNLIIMDEAHFTDPASIAARGYISTRVEMG-EAAGIFMTATPPG 143 (305)
T ss_dssp CCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHT-SCEEEEECSSCTT
T ss_pred CCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCC
T ss_conf 3154008985301112520578889999841665-3138994157876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.47 E-value=1 Score=19.00 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.4
Q ss_pred EEEECCCCCHHHHHHHHHHH
Q ss_conf 99995798419999999999
Q 000818 496 YLFQGPRGTGKTSTAKIFSA 515 (1268)
Q Consensus 496 yLLyGPpGTGKTSLARiLAk 515 (1268)
+++.|.+|+|||++...|..
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899798999999970
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=81.17 E-value=1.1 Score=18.93 Aligned_cols=109 Identities=23% Similarity=0.167 Sum_probs=52.1
Q ss_pred CEEEEECCCCCHHHH-HHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 729999579841999-99999999602268-89998887655432235--998527999088874868999999999808
Q 000818 494 PVYLFQGPRGTGKTS-TAKIFSAALNCVAT-DQTKPCGYCRECNDFIS--GKSRNFMEVDGTNKKGLDRVRYILKHLSAG 569 (1268)
Q Consensus 494 ~ayLLyGPpGTGKTS-LARiLAkaLnc~~~-e~~~PCg~C~sC~~i~~--G~s~dvIEIDaSs~~GID~IreLIEev~~~ 569 (1268)
..-+++||=..|||+ +.+.+-+...+... .-.+|....+....+.. |....-+.+ ....++++.+...
T Consensus 3 ~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~--------~~~~~~~~~~~~~ 74 (139)
T d2b8ta1 3 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV--------ESAPEILNYIMSN 74 (139)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE--------SSTHHHHHHHHST
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEE--------CCCHHHHHHHHHH
T ss_conf 79999915067899999999999987799589997731342464477236852655895--------2640357888753
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 9999998479999589998979899999987079995899997189
Q 000818 570 LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 570 p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte 615 (1268)
. ....+.+|+|||++.+.. ....+...+.+....| |++.=+
T Consensus 75 ~--~~~~~dvI~IDE~QFf~d-~i~~~~~~~~~~g~~V--iv~GLd 115 (139)
T d2b8ta1 75 S--FNDETKVIGIDEVQFFDD-RICEVANILAENGFVV--IISGLD 115 (139)
T ss_dssp T--SCTTCCEEEECSGGGSCT-HHHHHHHHHHHTTCEE--EEECCS
T ss_pred C--CCCCCCEEEECHHHHCCH-HHHHHHHHHHHCCCEE--EEEEEC
T ss_conf 0--166767999610343561-5889999998448518--999961
|