Citrus Sinensis ID: 000832
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1263 | ||||||
| 224071315 | 1219 | predicted protein [Populus trichocarpa] | 0.961 | 0.995 | 0.619 | 0.0 | |
| 255568587 | 1216 | conserved hypothetical protein [Ricinus | 0.958 | 0.995 | 0.619 | 0.0 | |
| 359480626 | 1295 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.962 | 0.579 | 0.0 | |
| 147780567 | 1268 | hypothetical protein VITISV_017339 [Viti | 0.982 | 0.978 | 0.590 | 0.0 | |
| 357482605 | 1327 | Condensin-2 complex subunit G2 [Medicago | 0.980 | 0.932 | 0.551 | 0.0 | |
| 356495508 | 1228 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.983 | 0.544 | 0.0 | |
| 449448466 | 1217 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.984 | 0.540 | 0.0 | |
| 449522363 | 1217 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.948 | 0.984 | 0.539 | 0.0 | |
| 297837803 | 1203 | hypothetical protein ARALYDRAFT_475499 [ | 0.939 | 0.985 | 0.523 | 0.0 | |
| 186493087 | 1203 | condensin-2 complex subunit G2 [Arabidop | 0.939 | 0.986 | 0.521 | 0.0 |
| >gi|224071315|ref|XP_002303400.1| predicted protein [Populus trichocarpa] gi|222840832|gb|EEE78379.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1504 bits (3895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1264 (61%), Positives = 965/1264 (76%), Gaps = 50/1264 (3%)
Query: 1 MEKRL--RSSLQ-SSAEEFLISATKQNFK--SSKQVLKTLINSITSSSNLVTSLPHSLCN 55
MEKR SSL SS +EFL +AT+ N K SSK+ LK+LI+SI SSS L +SL SL
Sbjct: 1 MEKRHCHPSSLHNSSPQEFLSAATELNLKVKSSKRTLKSLIHSIPSSSPLSSSLLPSLHT 60
Query: 56 SISNAIETLQNDSIPGHAKSPPTKRCRRYSRTAKSSSSIDNANENYAAERKQKVLEDLQI 115
IS++I + + H SPP + RR R+ + +++ + A N + +Q LE L +
Sbjct: 61 FISDSILSFR------HPTSPPPSKKRR--RSGRKNNTDEEATLNLHKQPQQHNLEKLHL 112
Query: 116 FSHVAYLCTAHPRKVFSSSDLLPAVQLLHNNLILFESDSVLSFEIASLCESWWKNDLGGK 175
+HVA+LC +HP+KVFS DLLP+VQLLH+NL+ FESDS L EI++LCE +W+ +L G+
Sbjct: 113 LAHVAFLCVSHPKKVFSPRDLLPSVQLLHDNLVFFESDSSLLLEISNLCEVYWRENLQGR 172
Query: 176 EMLISQFLPFLVSRSLTLKKKVDVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLY 235
EMLISQ LPFLVSRSLTLKKKVDVHRVY+ R+AF LFDF+D SIEDLK+LLIR VI+P+Y
Sbjct: 173 EMLISQSLPFLVSRSLTLKKKVDVHRVYALREAFTLFDFEDESIEDLKMLLIRTVIAPIY 232
Query: 236 LKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFRE 295
LKTEDGRKFL F+FGLS ++K+ LAMIKSQI+F RKS+LEAYG VL+RAWKGV+ +E
Sbjct: 233 LKTEDGRKFLGFIFGLSMQLMKEALAMIKSQIAFGRKSILEAYGVVLFRAWKGVDGVLKE 292
Query: 296 DVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLTEPVMFRSLQA 355
+ E GFLQ LIEG+I+A+SR FAAS+RRVLGGFV+QR T GVEK+LF L EPV+FRSLQ
Sbjct: 293 EFEGGFLQGLIEGSIYANSRVFAASVRRVLGGFVSQRITDGVEKLLFRLAEPVIFRSLQV 352
Query: 356 ANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCC 415
ANSNVR NALHLLLD FPLEDPDA KEVKDTL DKQFFL+E+L+ DDCPDVRVVAVEGC
Sbjct: 353 ANSNVRLNALHLLLDFFPLEDPDAMKEVKDTLLDKQFFLMERLIMDDCPDVRVVAVEGCF 412
Query: 416 RILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLP 475
R+LHLFWE+IPS+TITK++TKIFDD SHD+CNEVRL+TVNG IYLLGNP SHE+LKVLLP
Sbjct: 413 RVLHLFWEIIPSSTITKLLTKIFDDMSHDICNEVRLSTVNGTIYLLGNPQSHEILKVLLP 472
Query: 476 RLGHLMQDNVLSVRLAMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLL 535
RLGHL+ D+ LS R A+ DLLLL+RDIR+FQFNKVVGLD+LLS LAND SQVAQKITRLL
Sbjct: 473 RLGHLILDSALSSRAAVMDLLLLIRDIRSFQFNKVVGLDVLLSTLANDHSQVAQKITRLL 532
Query: 536 MPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVELVTVFIRLVLSH 595
+PSYFP KV+I+EAC+RCVT++KRSP+AGARFCEFA+ EGA +SL+ELV V I LVLS+
Sbjct: 533 IPSYFPSKVSIEEACNRCVTLIKRSPMAGARFCEFAMLEGASPKSLMELVRVLIGLVLSN 592
Query: 596 DKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSSVFEI 655
+KL DQIEGLL A + LC ++ E CYKNALKE F KVK LFAAASTG A+ SV I
Sbjct: 593 EKLLADQIEGLLIAAASLCNNLVSEPCYKNALKEFFTGGKVKCLFAAASTGHAQPSVLNI 652
Query: 656 VSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRSAHKLLLSSCAFDDMLEALTMLL 715
S VSPD+V GL+E+CM L++ C GL ++ E QA+VRSAH+LLLS FDDM ++LT LL
Sbjct: 653 CSVVSPDDVAGLVEECMSLVTNCCGLPKNVEMQAKVRSAHRLLLSYSGFDDMFDSLTRLL 712
Query: 716 QKAVYRCHVKFGTEIPKHNVSSVKRKKPKSAVKISGKWKYASGKKASSFEEDYSIAVGIA 775
QKA YRCHVKFG EIPK VS KRKK KS+VKIS K K+ GK +++FE DYSIAVGIA
Sbjct: 713 QKAAYRCHVKFGVEIPKQRVSPGKRKKCKSSVKISAKRKHVGGKNSTTFEYDYSIAVGIA 772
Query: 776 WQVKDLLTSEDSRKAMLGSQHLELLFLALKVISEVSILHCMYCDYMDVYPVLAYTALALE 835
Q+KDL+ S+DSR+A+LGSQ LE FLALKVISEVSI HC+ C+YMD PVLAY+ LAL
Sbjct: 773 CQIKDLVVSKDSREAILGSQALESSFLALKVISEVSIEHCISCEYMDTSPVLAYSGLALH 832
Query: 836 LTLQNIGISRPSGSGSKKDDRTESTRSSSEASFILLAVFHLNSSLCNTSCTDELLGGDSG 895
++LQNI IS + SGSK + T+S+ S + ++ HL +C D+LLG +
Sbjct: 833 MSLQNISIS-TNDSGSKNSEGTDSS------SILEASLDHL------LNCIDKLLGEVN- 878
Query: 896 NPSKLSPGSKHDKSNMRQGRGHKVRELQKEASSSNDNGFVCTGQKITSKKVNMLTAVLKF 955
+ E Q +AS SND+G + T ++ S KV MLTAVLK
Sbjct: 879 -----------------------IGETQADASISNDDGSLSTKERGMSNKVKMLTAVLKL 915
Query: 956 IVDSTALGFLSHIRGGCAKFTTAYVQYVISALGQQSRDNLLFNYNDLKETFISLKSSFSY 1015
IVDS A+G LS I G C FT+AY++++I AL QS + L F ++LK+ F+ LKSSFSY
Sbjct: 916 IVDSIAMGLLSRIHGRCLNFTSAYLKHIIFALEHQSSEKLQFKEDELKDFFLCLKSSFSY 975
Query: 1016 AAKLINLCLRDSSEASPPPAEAFDLVNELINLICSVELHMDSGYAARLVVVAKAWLLDLI 1075
AAKL+NL LRD+SE SP EAFDLVN++++LI S+ELH+ SG+AA LV AK+WL DLI
Sbjct: 976 AAKLLNLILRDTSETSPLLPEAFDLVNDMLDLITSIELHLGSGFAAGLVAAAKSWLPDLI 1035
Query: 1076 LALGSGCIFYQSRAGGVHFTASDHFKVHFPWWLLILARTELDEISKVNSDEDNGRVSKQE 1135
LALGS C+ +++ + TA D K +P W +ILA+TEL EI + N +E + S+ E
Sbjct: 1036 LALGSPCMLNKTQVASAYITALDCIKSGYPSWPIILAKTELYEIREANPEEVDDITSEPE 1095
Query: 1136 EFPEFKKFMELIIPLLKGKPCILDAVGVVFLTGSVVGLERKDFGLFLGLVHFVCVKLIGT 1195
EF FKKFME+I+ LLKGK ILDAVGV+ LTGSVVGLERKDFG+ LGL+HFVCVKL+G
Sbjct: 1096 EFRAFKKFMEMIVSLLKGKFNILDAVGVILLTGSVVGLERKDFGVVLGLLHFVCVKLVGE 1155
Query: 1196 DNREWNGLDAMLVSLPDIYPRIEKEIEEQSQEGERQKLLDAKVLLEPVWMHHVFETERFS 1255
++REWN LD ML SLPDIYP+IE+ IEEQS E RQKL A++LL+ VW +H++ET RFS
Sbjct: 1156 EDREWNELDMMLASLPDIYPQIERGIEEQSDENARQKLCSARMLLDHVWFYHLYETGRFS 1215
Query: 1256 VMEE 1259
M+E
Sbjct: 1216 AMKE 1219
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568587|ref|XP_002525267.1| conserved hypothetical protein [Ricinus communis] gi|223535425|gb|EEF37095.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359480626|ref|XP_002277749.2| PREDICTED: uncharacterized protein LOC100264215 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147780567|emb|CAN75759.1| hypothetical protein VITISV_017339 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357482605|ref|XP_003611589.1| Condensin-2 complex subunit G2 [Medicago truncatula] gi|355512924|gb|AES94547.1| Condensin-2 complex subunit G2 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356495508|ref|XP_003516619.1| PREDICTED: uncharacterized protein LOC100808524 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449448466|ref|XP_004141987.1| PREDICTED: uncharacterized protein LOC101213278 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449522363|ref|XP_004168196.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225636 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297837803|ref|XP_002886783.1| hypothetical protein ARALYDRAFT_475499 [Arabidopsis lyrata subsp. lyrata] gi|297332624|gb|EFH63042.1| hypothetical protein ARALYDRAFT_475499 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|186493087|ref|NP_176676.3| condensin-2 complex subunit G2 [Arabidopsis thaliana] gi|332196188|gb|AEE34309.1| condensin-2 complex subunit G2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1263 | ||||||
| TAIR|locus:2010901 | 1203 | HEB1 "hypersensitive to excess | 0.645 | 0.677 | 0.540 | 1.5e-294 | |
| UNIPROTKB|F1NWM5 | 1147 | LOC100859557 "Uncharacterized | 0.387 | 0.427 | 0.268 | 2e-41 | |
| DICTYBASE|DDB_G0288819 | 1437 | ncapG2 "non-SMC condensin II c | 0.355 | 0.312 | 0.296 | 3.1e-41 | |
| MGI|MGI:1923294 | 1138 | Ncapg2 "non-SMC condensin II c | 0.361 | 0.401 | 0.281 | 5e-41 | |
| UNIPROTKB|F1N535 | 1140 | NCAPG2 "Uncharacterized protei | 0.391 | 0.433 | 0.268 | 5.6e-41 | |
| ZFIN|ZDB-GENE-070410-100 | 1140 | ncapg2 "non-SMC condensin II c | 0.358 | 0.397 | 0.306 | 5.6e-41 | |
| RGD|1308406 | 1137 | Ncapg2 "non-SMC condensin II c | 0.361 | 0.401 | 0.272 | 1.5e-40 | |
| UNIPROTKB|Q86XI2 | 1143 | NCAPG2 "Condensin-2 complex su | 0.391 | 0.432 | 0.272 | 1e-39 | |
| UNIPROTKB|E2RMM6 | 1138 | NCAPG2 "Uncharacterized protei | 0.387 | 0.429 | 0.269 | 1.3e-39 | |
| UNIPROTKB|I3L5I0 | 954 | I3L5I0 "Uncharacterized protei | 0.281 | 0.373 | 0.275 | 1.7e-32 |
| TAIR|locus:2010901 HEB1 "hypersensitive to excess boron 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2188 (775.3 bits), Expect = 1.5e-294, Sum P(2) = 1.5e-294
Identities = 451/834 (54%), Positives = 571/834 (68%)
Query: 1 MEKRLRSSLQSSAEEFLISATKQNFKSSKQVLKTLINSITSSSNLVTSLPHSLCNSISNA 60
MEKRLRSSL++S+EEFL SA K KSSK LKT+IN++ SS+L +SLP +L NSI +
Sbjct: 1 MEKRLRSSLKTSSEEFLSSAVKLTLKSSKPSLKTIINAVKPSSDLSSSLPLALHNSILHH 60
Query: 61 IETLQ---------NDSIPGHAKSPPTKRCRRYSRTAKSSSSIDNANENYAAERKQKVLE 111
E+ Q N IP + SPPTKR R + T+ S +D +RK ++L
Sbjct: 61 TESFQKLLDEVNNNNTYIPSPSNSPPTKRHRGTTGTSPDSD-LD--------QRKHQILA 111
Query: 112 DLQIFSHVAYLCTAHPRKVFSSSDLLPAVQLLHNNLILFESDSVLSFEIASLCESWWKND 171
LQI S+V +LC +P+ F +SDLLPA Q LHNNL LFESDSVL EIA +CE WWK
Sbjct: 112 SLQILSYVLHLCLLNPKNAFPTSDLLPAAQALHNNLRLFESDSVLCLEIAGVCECWWKEG 171
Query: 172 LGGKEMLISQFLPFLVSRSLTLKKKVDVHRVYSXXXXXXXXXXXXNSIEDLKLLLIRCVI 231
L G+E LISQ LPFL+SRSLTLKKKVDVHRVY SIEDL++LL+RCV+
Sbjct: 172 LVGRESLISQSLPFLLSRSLTLKKKVDVHRVYMLREAFTLFDFEDESIEDLRMLLMRCVV 231
Query: 232 SPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEE 291
SPLY+KTEDG++F++F FGLS+ ++K LA++K+QI KS+LE +G +L+RAWK VE
Sbjct: 232 SPLYVKTEDGQRFVSFAFGLSRQLMKSGLAVVKAQIPLGSKSVLEGFGGILFRAWKEVEL 291
Query: 292 GFREDVESGFLQVLIEGXXXXXXXXXXXXXXXVLGGFVNQRTTPGVEKMLFNLTEPVMFR 351
+ ++E GFLQ +I+ VLGGF++QRT+ GVEK+LF L EP++FR
Sbjct: 292 DLKGEIEDGFLQGIIDSAIHASSSAFAASLRRVLGGFISQRTSQGVEKLLFTLAEPMIFR 351
Query: 352 SLQAANSNVRQNAXXXXXXXXXXXXXXATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAV 411
SLQ ANSNVR NA ATKE KDTL DKQF+LLEKLL+D+CPDVR VAV
Sbjct: 352 SLQVANSNVRLNALHLLLDLFPMEDPDATKEAKDTLLDKQFYLLEKLLSDECPDVRSVAV 411
Query: 412 EGCCRILHLFWELIPSAXXXXXXXXXFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLK 471
EG R+ +LFWE+IPSA FDD SH+ C+EVRL+TVNGI YLL NP SH +LK
Sbjct: 412 EGLSRVFYLFWEVIPSATITKVLTKIFDDMSHESCSEVRLSTVNGITYLLANPQSHGILK 471
Query: 472 VLLPRLGHLMQDNVLSVXXXXXXXXXXXXXIRTFQFNKVVGLDILLSALANDQSQVAQKI 531
V+LPRLGHLM D+V SV +R FQFN VV LD+LLS LA+DQ+ VA+ I
Sbjct: 472 VILPRLGHLMLDSVTSVRVAMVDLLLLIRDVRAFQFNTVVSLDVLLSVLASDQTHVAKGI 531
Query: 532 TRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVELVTVFIRL 591
RLL+PSYFP + +EAC RC T++ R+P AGARFCEF VS GA ++S++ LV F+
Sbjct: 532 ARLLIPSYFPSRKRAEEACQRCRTLINRNPKAGARFCEFLVSLGATVKSVLHLVGFFLNS 591
Query: 592 VLSHDKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAASTGRARSS 651
VLS DKL E+Q EGLL A YLCKD+ + +LKEL +K+KSL A A T +A+SS
Sbjct: 592 VLSGDKLLENQTEGLLRAAYYLCKDLVADSGCMASLKELLPGEKLKSLLAFAPTAQAQSS 651
Query: 652 VFEIVSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRSAHKLLLSSCAFDDMLEAL 711
V +I++ VSPD V +LE CM L+ C GL D RQ E+RS HKLLLSS AF D++
Sbjct: 652 VIDIITMVSPDIVSEVLEDCMNLVVNCGGLPSDAGRQTELRSVHKLLLSSNAFCDLIGTF 711
Query: 712 TMLLQKAVYRCHVKFGTEIPKHNVSSVKRKKPKSAVKISGKWKYASGKKASSFEEDYSIA 771
T ++QK YRC + FG E+ + N+ S+KRKK KS+ K S +WK+ SGK A SFEEDY +A
Sbjct: 712 TSIMQKTAYRCQINFGYEVERKNLQSMKRKKSKSSGKSSVRWKHVSGKNAISFEEDYLVA 771
Query: 772 VGIAWQVKDLLTSEDSRKAMLGSQHLELLFLALKVISEVSILHCMYCDYMDVYP 825
VGIAWQ+KDLLT+ED+RK++L S +E L L+LKV+S SIL C+YMDV P
Sbjct: 772 VGIAWQIKDLLTTEDARKSILESD-IEELLLSLKVVSHTSILQATCCEYMDVNP 824
|
|
| UNIPROTKB|F1NWM5 LOC100859557 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0288819 ncapG2 "non-SMC condensin II complex, subunit G2" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1923294 Ncapg2 "non-SMC condensin II complex, subunit G2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N535 NCAPG2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070410-100 ncapg2 "non-SMC condensin II complex, subunit G2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| RGD|1308406 Ncapg2 "non-SMC condensin II complex, subunit G2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q86XI2 NCAPG2 "Condensin-2 complex subunit G2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RMM6 NCAPG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L5I0 I3L5I0 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1263 | |||
| pfam12422 | 152 | pfam12422, Condensin2nSMC, Condensin II non struct | 3e-57 |
| >gnl|CDD|204914 pfam12422, Condensin2nSMC, Condensin II non structural maintenance of chromosomes subunit | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 3e-57
Identities = 73/152 (48%), Positives = 107/152 (70%)
Query: 226 LIRCVISPLYLKTEDGRKFLAFLFGLSKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRA 285
L+RC + P ++KTE+G+KFL+FLF LS ++K++ +IK+Q+ KS+LEAYG++L+RA
Sbjct: 1 LLRCFVPPAFIKTEEGKKFLSFLFSLSSILIKEIHTLIKNQLPKLSKSVLEAYGEILFRA 60
Query: 286 WKGVEEGFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQRTTPGVEKMLFNLT 345
WK +E++E +Q L+EGAIHA + A R VL F +++ V+K+L L
Sbjct: 61 WKNASGALKEEIEEVIIQDLMEGAIHAETPLLAKKFREVLSSFHSKKGRKEVDKLLLRLY 120
Query: 346 EPVMFRSLQAANSNVRQNALHLLLDLFPLEDP 377
EP+++R+LQ AN+ VR NAL LLLD FPLEDP
Sbjct: 121 EPILWRALQVANAKVRLNALALLLDAFPLEDP 152
|
This domain family is found in eukaryotes, and is approximately 150 amino acids in length. This family is part of a non-SMC subunit of condensin II which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II. Length = 152 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1263 | |||
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF12422 | 152 | Condensin2nSMC: Condensin II non structural mainte | 100.0 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.69 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.25 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.09 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.93 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.89 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.86 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.77 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.7 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.58 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.45 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.38 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.17 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 97.01 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.97 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.61 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.57 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.53 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.47 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.38 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.37 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 96.34 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.99 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.91 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.85 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.77 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.75 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.71 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.62 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.56 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.42 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.28 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 95.26 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.26 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.58 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.54 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.45 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.25 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.1 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 93.91 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 93.91 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 93.79 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 93.5 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 93.33 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 93.29 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 93.27 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 93.15 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 93.09 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.08 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 92.96 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.93 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 92.86 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.78 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 92.62 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 92.32 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 92.25 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 91.9 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 91.8 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 90.18 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 89.89 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 89.76 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 89.62 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 89.23 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 89.1 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 88.66 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 88.49 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 88.3 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 87.02 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 86.93 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 85.16 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 84.82 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 84.44 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 84.07 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 83.16 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 83.13 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 82.74 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 82.73 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 82.16 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 82.08 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 82.05 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 81.11 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 80.91 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 80.77 |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-177 Score=1513.46 Aligned_cols=979 Identities=23% Similarity=0.298 Sum_probs=923.7
Q ss_pred CccchhhhhhhHHHHHHHhhccCccchhHhhhhhcccccccCCCCCCHHHHHHHHHHHhhccccccCccchhHHHHHhcC
Q 000832 172 LGGKEMLISQFLPFLVSRSLTLKKKVDVHRVYSFRDAFALFDFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGL 251 (1263)
Q Consensus 172 l~~kE~Lv~qtLp~LL~rSl~~~k~~dI~RL~~lReal~llDf~deS~~slk~LLLrc~~sP~FlkseEGrrFLAflFgl 251 (1263)
.|++|-+.+|-.|+++|++|..+.+++++|.++.|.++.+|||+|++|++++++|+|||++|+|+++||||||+|++|+|
T Consensus 1 mpksnpvtpnkqPsedwneLltefrgkggRalqktfirkLwavqediIananp~llrCf~~p~yik~eeG~rf~s~~f~~ 80 (1005)
T KOG1949|consen 1 MPKSNPVTPNKQPSEDWNELLTEFRGKGGRALQKTFIRKLWAVQEDIIANANPMLLRCFINPNYIKKEEGRRFLSCLFNW 80 (1005)
T ss_pred CCCCCCCCCCCCchhhHHHHHHHHcccchHHHHHHHHHHHHhhhHHHHhccchHHHHHhhhhHhhcChhhhhHHHHHhhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhccCcHHHHHHHhHHHHhhhcccchhhHHHHHHhHHHHHHHHhhccCCHHHHHHHHHHHhhHhhc
Q 000832 252 SKPMLKDVLAMIKSQISFERKSMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASSRAFAASIRRVLGGFVNQ 331 (1263)
Q Consensus 252 ~~~Lik~ih~tIKnQLp~~~kS~le~YGEIyFrAWK~A~gd~~eeIE~~cIQdLm~~AIha~s~~lAaklR~VLs~FHsq 331 (1263)
+.++++.|++++|+|+|...||+|++||||||||||.|+++++|+||++|||++|++||||++.|+++++|+||++||+|
T Consensus 81 ~~~~~k~il~~~k~q~~~l~ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hq 160 (1005)
T KOG1949|consen 81 NINFIKMILGTIKNQLQGLQKSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQ 160 (1005)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CC-CcchHHHHHHhhHHHHHHhhcCCchHHHHHHHHHhHhhcCCCCCccchHHHHHHHHHHHHHHhhhcCCCChHHHHHH
Q 000832 332 RT-TPGVEKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVA 410 (1263)
Q Consensus 332 K~-~kgVdemL~rLY~PILwRLLka~NftVR~SA~~LF~~AFPlvdpd~~rEe~d~EL~kQF~~L~~LL~DDtPMVRRAA 410 (1263)
|+ ++||++|++|+|.|||||+++++|+.||.||+.||.++||..|||.++|++|..|+|||++|++||.||+||||..|
T Consensus 161 kk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a 240 (1005)
T KOG1949|consen 161 KKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTA 240 (1005)
T ss_pred HHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 85 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhhCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhCCCCchHHHHhHHHhhhhhcCCCchHHHH
Q 000832 411 VEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRL 490 (1263)
Q Consensus 411 A~gVcriLskfWEiIP~~~I~slL~~If~~LAkDsQDSVRlaVVeGLiaLLkn~~She~Lk~LLP~LksLI~DkSWRVRy 490 (1263)
++|+|++.++||++||++++++++.+|++++|+|.+.+||++||+|+..|+.||.+|..++++||+++++++|+|+|||.
T Consensus 241 ~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRv 320 (1005)
T KOG1949|consen 241 ILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRV 320 (1005)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceeeecChHHHHHHHhcCchHHHHHHHHHhcccCCCCCCChHHHhHHHHHHHhcChHHHHHHHHH
Q 000832 491 AMADLLLLLRDIRTFQFNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPLKVNIKEACSRCVTIVKRSPVAGARFCEF 570 (1263)
Q Consensus 491 AfADLLleLk~irgiKF~~VV~~D~LLaRLa~Ds~~V~k~IvkLLipSfFP~k~s~~E~~~RCi~Lik~nP~Aa~~Fy~~ 570 (1263)
|+.|+|.+|++++.++||+||++||+|++|+.|+..|+++++.+++|||||++.++++||.||+||+++||.||++||+|
T Consensus 321 A~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~~ 400 (1005)
T KOG1949|consen 321 AFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRFYQY 400 (1005)
T ss_pred HHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC-CChHHHHHHHHHHHHhhcc----CCCCChhHHHHHHHHHHHHHhhhhhhHhHHHHHHhHhhhhhHHHHHHhhcc
Q 000832 571 AVSEG-APLESLVELVTVFIRLVLS----HDKLDEDQIEGLLAAVSYLCKDIAREQCYKNALKELFANDKVKSLFAAAST 645 (1263)
Q Consensus 571 a~~~~-a~~~~l~~Li~~ll~~~ls----~~k~~~e~~eg~~~a~a~L~~~L~~~~~~k~~l~~l~~g~~l~~ll~~a~t 645 (1263)
++++| ++.+++.+||++|+||||+ .+++++||.||+.+|++||||.|+.++.||+.|.|...|.+.|.....+.+
T Consensus 401 l~~~~~~~~~~~~hlI~~fln~~~~~~~~~~p~lee~~eG~~ka~~yl~~~lV~d~~Cma~L~e~~~g~k~k~d~~f~~~ 480 (1005)
T KOG1949|consen 401 LHEHTATNIAKLIHLIRHFLNACIQRAVREPPELEEEEEGREKATVYLKTLLVNDVACMAGLLEIIVGLKKKIDRSFENN 480 (1005)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhccH
Confidence 99999 6779999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccCCCchhHHHHHHHhhhhhcCCCChhhhhHHHHHHHhHHhhccCChhHHHHHHHHHHHHHHhhhhhc
Q 000832 646 GRARSSVFEIVSTVSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRSAHKLLLSSCAFDDMLEALTMLLQKAVYRCHVK 725 (1263)
Q Consensus 646 ~~a~sa~~~I~s~~~~~~~~~~~~~c~~~~~~~~g~~~~~~~q~~~~sa~~~~~s~~~~d~~~~~l~~~l~~~~~~~~~~ 725 (1263)
..|++.++++.-.+.|+-+++..++|| |.|+|.|+.+|-|++|.|+..++...++++...++.+.|+ +..
T Consensus 481 kea~~~~in~~~~v~p~~~S~V~~dd~-----cksipnDvla~~el~sv~p~~~~p~~~c~vi~t~~S~~~~-----~~d 550 (1005)
T KOG1949|consen 481 KEAKLYTINKFASVLPEYLSKVFKDDR-----CKSIPNDVLALFELMSVMPASAVPPFSCGVISTLRSREEG-----AVD 550 (1005)
T ss_pred HHHHHHhhccccccCHHHHHHhchhhh-----hccCchHHHHHhhhhccChhhcCCchhhccccChhHHHHh-----hcc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999998 788
Q ss_pred cccCCCCCcCccccccCCCccccccccccccCCCCCCCchhhhhhHhhhhhhHHHhhcchhhhhhhhccchHHHHHHHhh
Q 000832 726 FGTEIPKHNVSSVKRKKPKSAVKISGKWKYASGKKASSFEEDYSIAVGIAWQVKDLLTSEDSRKAMLGSQHLELLFLALK 805 (1263)
Q Consensus 726 ~g~~~~~~~~~~~krkk~ks~~k~~~~~~~~~~~~~~~~~~~~~~~~g~awqv~~~l~~~~~r~a~l~s~~~e~~~~~lk 805 (1263)
||++.-..+..|.++||+|+..+.+..|+|+.|+++.||+++ .|+|.+|||+|.++.+|.||.|+.+ ++|.++..++
T Consensus 551 ~gy~vl~~~l~s~~~kkkr~~le~~~~wl~~~~~~aks~lqs--~a~~~~~qikDeykt~d~~k~I~l~-~IE~lL~kee 627 (1005)
T KOG1949|consen 551 KGYCVLLDCLCSWGQKKKRHILELVDNWLPTEHAQAKSNLQS--TASKGRVQIKDEYKTRDVKKEIALV-YIEYLLTKEE 627 (1005)
T ss_pred ccHHHHHHHHHhhhhhcccccccCchhhhhhhhHHHHHHHHh--hcccceeeecchhhhhhhHHHHHHH-HHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 9999999999999999999999997 8999999999
Q ss_pred hHhHhHhhhhcccccccchhhHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccCCchhhHHHHHHHhhhccCCCCcc
Q 000832 806 VISEVSILHCMYCDYMDVYPVLAYTALALELTLQNIGISRPSGSGSKKDDRTESTRSSSEASFILLAVFHLNSSLCNTSC 885 (1263)
Q Consensus 806 ~is~~~i~~c~~~~~~d~~p~lay~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~c 885 (1263)
+.+.. +-.+|+|+|+.| + .|++++++|. ..|
T Consensus 628 gqeHt---~~~~cllsil~p-------------r---------------------------fI~~~~~~~~------~~e 658 (1005)
T KOG1949|consen 628 GQEHT---KNRECLLSILAP-------------R---------------------------FIKKLNHLLK------ALE 658 (1005)
T ss_pred hcccc---cccceeeeccCh-------------H---------------------------HHHHHHHHHh------hcc
Confidence 99887 888999999999 1 4899999999 999
Q ss_pred hhhhhC-CCCCCCC---CCCCCCcccccc--ccccCcchhhhhhhhcCCC-----CC------CCcccccccchhHHHHH
Q 000832 886 TDELLG-GDSGNPS---KLSPGSKHDKSN--MRQGRGHKVRELQKEASSS-----ND------NGFVCTGQKITSKKVNM 948 (1263)
Q Consensus 886 ~dkl~~-~~~g~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~ 948 (1263)
+|++++ |+.|.++ .-+++-..---+ .+..+| |-+++ .| ...+++.. |+.|++||
T Consensus 659 t~~~~~~~~~~tpgllL~k~~~~S~~~ap~~fg~h~r--------D~~I~l~~kF~~~v~v~lsa~e~~tr-gv~~e~k~ 729 (1005)
T KOG1949|consen 659 TSKADLESLLQTPGLLLGKPRGFSEAAAPRAFGLHCR--------DLSIHLQHKFCSEVKVYLSALEDTTR-GVWLESKI 729 (1005)
T ss_pred chHhHhhhhhcCCCccccCCCCCccccCchhhccccc--------ceehHHHHHHHHHHHHHHHHhccccc-cchhHHHH
Confidence 999999 9988777 111111000000 111111 01111 01 11233334 99999999
Q ss_pred HHHHHHHHHhcccccccccCccccccchhHHHHHHHHHhhhhcccccccccccchhhhhhhcchhhhHHHHHHHHhcCCC
Q 000832 949 LTAVLKFIVDSTALGFLSHIRGGCAKFTTAYVQYVISALGQQSRDNLLFNYNDLKETFISLKSSFSYAAKLINLCLRDSS 1028 (1263)
Q Consensus 949 ~t~~lkf~vd~~~~~~~~~~~~~~~~f~s~~~~~~~s~~~~~~~~~~~f~~~~~k~~~~~~kss~syaak~l~l~l~~~~ 1028 (1263)
+++|-+| ++++-|++.+..+....+|-|.|.+|++|.++.| .+.+|+.-+++..++|.++||||+.++++|++|.++
T Consensus 730 l~~i~d~-~e~~e~~~a~~~Qa~i~~~~S~~~~~V~s~~ndh--t~fe~~~~~~~~gi~~t~~s~syv~~~~~Ll~r~~~ 806 (1005)
T KOG1949|consen 730 LSFIQDQ-EEDYEKLHAVIYQAIIQTYLSVCKDVVMSGLNDH--TQFEMQLLQRSLGIMQTVKSFSYVSLLLDLLKRITG 806 (1005)
T ss_pred HHhhhch-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCC--CceeeechhhhhhhhhhhchhHHHHHHHHHHHHHhh
Confidence 9999999 7777899999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhHHHHHHHhccccccccccCCCccccccccccccchhHH
Q 000832 1029 EASPPPAEAFDLVNELINLICSVELHMDSGYAARLVVVAKAWLLDLILALGSGCIFYQSRAGGVHFTASDHFKVHFPWWL 1108 (1263)
Q Consensus 1029 e~s~~~~eaf~lan~lldl~~sve~~~gs~~a~~lv~~~k~wlp~lil~lg~~~~~~~~~~~~~~~~~~~~~~~~~p~w~ 1108 (1263)
+++.|..+-|+++|+|||+++.|+-.+|+.||.|.|++..+|+|| +.....|.+.+||.|.
T Consensus 807 ~~~~~~~ds~d~~~~lld~~~~V~~sL~~~~ar~~vs~~~~w~~d-------------------~t~~~~H~~mlfs~v~ 867 (1005)
T KOG1949|consen 807 SSLIQKTDSDDEVAMLLDTVQKVFQSLLECIARSFVSQPEEWLRD-------------------STKRMMHHFMLFSIVS 867 (1005)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccch-------------------hhhchhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999 3444588899999998
Q ss_pred HHHhhhhhcccccCCCCCcCCccCCCCCchhHHHHHHHHHHHhcCCCcchhhhHHHhhhhhhhccccccchhhhhhHHHh
Q 000832 1109 LILARTELDEISKVNSDEDNGRVSKQEEFPEFKKFMELIIPLLKGKPCILDAVGVVFLTGSVVGLERKDFGLFLGLVHFV 1188 (1263)
Q Consensus 1109 ~~~ak~el~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~llk~~~~ild~v~~~~l~~~~~~l~r~d~~~~~gl~~fv 1188 (1263)
.. ++ + |+.|.+.+...+++...+++|++++.+|+|++ .+|+-++.++++..||.-.+||+|-|
T Consensus 868 ~s---------~k-----~--Dvee~~~p~~l~dl~p~~f~li~~i~k~l~~~-~sll~~l~~cI~~ndi~~~~~l~~av 930 (1005)
T KOG1949|consen 868 AS---------SK-----S--DVEELTPPEHLSDLPPFSFCLIGIIIKSLNVV-RSLLDELKACIASNDIEGIVCLTAAV 930 (1005)
T ss_pred cc---------cc-----c--cccccCChhhhhcCCCceeehhHHHHHHHHHH-HHHHHHHHHHHHhccchhHHHHHHhH
Confidence 65 22 2 35566667778899999999999999999999 99999999999999999999999999
Q ss_pred HHhhcCCC-ccccccchhcccccCchhHHHHHHHHHhhchHHHHhHHhhHHhhhhHHhHhhhccCcccccccc
Q 000832 1189 CVKLIGTD-NREWNGLDAMLVSLPDIYPRIEKEIEEQSQEGERQKLLDAKVLLEPVWMHHVFETERFSVMEED 1260 (1263)
Q Consensus 1189 c~kl~g~~-~~~~~~l~~~~~sl~~~~~~i~~~~~~~~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~~~~~~~ 1260 (1263)
|++|+|+| ++.|.+|+.|+.-|+++||.++|+|.|..|+++|.-+|+|++++.|+|+||+||||+|++|+|+
T Consensus 931 ~~~Lv~~e~~~k~~~l~~~l~~l~R~~k~~~keI~e~~D~~er~l~e~A~~~l~~~~~~HilnsldvqlpDEn 1003 (1005)
T KOG1949|consen 931 HIILVINEGKHKSSKLREVLATLHRKLKTFMKEITEEEDSIERFLYESASRTLGELLNSHILNSLDVQLPDEN 1003 (1005)
T ss_pred heeEeecchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999995
|
|
| >PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes | Back alignment and domain information |
|---|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1263 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 3e-07 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 5e-06 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 5e-04 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-12
Identities = 104/751 (13%), Positives = 214/751 (28%), Gaps = 252/751 (33%)
Query: 203 YSFRDAFALF------DFDDNSIEDLKLLLIRCVISPLYLKTEDGRKFLAFLFGLSKPML 256
Y ++D ++F +FD ++D+ + ++S K E +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDM----PKSILS----KEE----------------I 51
Query: 257 KDVLAMIKSQISFERK--SMLEAYGDVLYRAWKGVEEGFREDVESGFLQVLIEGAIHASS 314
++ K +S + L + + + + + VEE R + FL I
Sbjct: 52 DHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINY--KFLM----SPIKTEQ 102
Query: 315 RAFAASIRRVLGGFVNQR-----TTPGVEKMLFNLTEPVMFRSLQAANSNVRQN---ALH 366
R + R ++ QR K N++ + L+ A +R +
Sbjct: 103 RQPSMMTRM----YIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 367 LLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRILHLFWELIP 426
+ K + D C +V C +FW +
Sbjct: 157 --------GVLGSGKTW--------------VALDVCLSYKVQ----CKMDFKIFWLNLK 190
Query: 427 SATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVL 486
+ + + ++ L ++ + + L ++ L L++
Sbjct: 191 NCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLKSKPY 243
Query: 487 SVRLAMADLLLLLRDIRTFQ----FNKVVGLDILLSALANDQSQVAQKITRLLMPSYFPL 542
+ LL+L +++ + FN + ILL TR
Sbjct: 244 ------ENCLLVLLNVQNAKAWNAFN--LSCKILL-------------TTR--------- 273
Query: 543 KVNIKEACSRCVTIVKRSPVAGARFCEFAVSEGAPLESLVELVTVFIRLVLSHDKLDEDQ 602
+ VT + L T I L L D+
Sbjct: 274 --------FKQVT-----------------------DFLSAATTTHISLDHHSMTLTPDE 302
Query: 603 IEGLLAAVSYL---CKDIAREQCYKNALKELFANDKVKSLFAAA-STGRARSSVFEIVST 658
++ LL YL +D+ RE N S+ A + G A ++
Sbjct: 303 VKSLLL--KYLDCRPQDLPREVLTTNPR--------RLSIIAESIRDGLATWDNWK---H 349
Query: 659 VSPDNVVGLLEQCMGLISKCKGLSEDEERQAEVRSAHKLLLSSCA-FDD----MLEALTM 713
V+ D + ++E + L E R+ + + F L++
Sbjct: 350 VNCDKLTTIIESSL------NVLEPAEYRK---------MFDRLSVFPPSAHIPTILLSL 394
Query: 714 LLQKAVYRCHVKFGTEIPKHNVSSVKRKKPKSAVKI------------------------ 749
+ + + ++ H S V+++ +S + I
Sbjct: 395 IWFDVIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 750 -SGKWKYASGKKASSFEEDYSIAVGIAWQVKDLLTSEDSRKAMLGSQHLELLFLALKVIS 808
+ + S + + Y I +K++ E R + L+ FL K+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRH 509
Query: 809 EVSILHC------------MYCDYM-DVYPVLAYTAL--ALELTLQNIGISRPSGSGSKK 853
+ + + Y Y+ D P Y L A+ L I
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERLVNAILDFLPKIE----------- 556
Query: 854 DDRTESTRSSSEASFILLAVFHLNSSLCNTS 884
E+ S + +A+ + ++ +
Sbjct: 557 ----ENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1263 | ||||
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-04 |
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 2e-06
Identities = 43/340 (12%), Positives = 90/340 (26%), Gaps = 22/340 (6%)
Query: 394 LLEKLLTDDCPDVRVVAVEGCCRILHLFWELIPSATITKIITKIFDDNSHDLCNEVRLAT 453
+L L ++ +R+ +++ I + + +T D EV LA
Sbjct: 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-----EVLLAL 68
Query: 454 VNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMAD-LLLLLRDIRTFQFNKVVG 512
+ E + LLP L L VR + L + +
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH-- 126
Query: 513 LDILLSALANDQSQVAQKITRLLMPSYFP---------LKVNIKEACSRCVTIVKRSPVA 563
L+ LA ++ L +P L+ + CS +V+R A
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR---A 183
Query: 564 GARFCEFAVSEGAPLESLVELVTVFIRLVLSHDKLDEDQIEGLLAAVSYLCKDIAREQCY 623
A E++ +F L ++ L E
Sbjct: 184 AASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243
Query: 624 KNALKELFANDKVKSLFAAASTGRARSSVFEIVSTVSPDNVVGLLEQCMGLISKCKGLSE 683
L++ + + + A ++ ++V + M +
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 684 DEERQAEVRSAHKLLLSSCAFDDMLEALTMLLQKAVYRCH 723
+ + + + +L + L+ A
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVK 341
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1263 | |||
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.81 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.5 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.54 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.39 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.35 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.32 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.05 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.98 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.9 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.76 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.47 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.42 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.28 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.12 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.92 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.39 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.2 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.15 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.03 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.0 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 94.44 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.54 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 91.87 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 87.22 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 86.92 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 86.08 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 85.85 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 85.8 |
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.2e-17 Score=133.08 Aligned_cols=188 Identities=20% Similarity=0.216 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 87788864999987516986578987999758525899973113778999999999995330799737999999633587
Q 000832 338 EKMLFNLTEPVMFRSLQAANSNVRQNALHLLLDLFPLEDPDATKEVKDTLFDKQFFLLEKLLTDDCPDVRVVAVEGCCRI 417 (1263)
Q Consensus 338 demL~rLY~PILwRLLka~NftVR~SAa~LF~~aFPlvdpd~tkEe~d~EL~KQF~~L~~LL~DDtPMVRRAAA~gVcrI 417 (1263)
.+.+.+.+.|++.++.+.+|+.+|.+|+.++..+++..++.. ..++...+ .+|++|+.|+||++|+. .
T Consensus 120 ~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~-----~~~l~~~~---~~l~~D~~~~VR~~a~~----~ 187 (588)
T d1b3ua_ 120 PSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-----KAELRQYF---RNLCSDDTPMVRRAAAS----K 187 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH-----HHHHHHHH---HHHHTCSCHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH---HHHHCCCCHHHHHHHHH----H
T ss_conf 888999999999998646314799999999999999861899-----99999999---99851699899999999----9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 88977207835899999999987326787417899899899952899846789827886643237986489999999999
Q 000832 418 LHLFWELIPSATITKIITKIFDDNSHDLCNEVRLATVNGIIYLLGNPLSHEVLKVLLPRLGHLMQDNVLSVRLAMADLLL 497 (1263)
Q Consensus 418 LskfWEiIP~~~I~slL~kIi~~LAkDsQDSVRlaVVeGLiaLLkn~~SheiLk~LLP~LksLI~DkSWRVRyAvADLLl 497 (1263)
++.+.+.++.+.+...+.+++..+.+|..+.||.++++++..++...........++|.+..+++|++|+||.++++.|.
T Consensus 188 l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~ 267 (588)
T d1b3ua_ 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFT 267 (588)
T ss_dssp HHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99899871578779999999999744885246789998887763058889999999999997202356888899998578
Q ss_pred HHHCCCCCCEEEECCHHHHHHHHHCC-CHHHHHHHHHHHCCC
Q ss_conf 86300297200102957999998107-549999999974002
Q 000832 498 LLRDIRTFQFNKVVGLDILLSALAND-QSQVAQKITRLLMPS 538 (1263)
Q Consensus 498 eLk~irgiKF~~VV~~D~LLaRLa~D-s~~Vak~IvkLLipS 538 (1263)
.+....+-+...- ..-.++..+-.| .+.|+....+.|..-
T Consensus 268 ~l~~~~~~~~~~~-~l~~~l~~ll~d~~~~vr~~a~~~l~~~ 308 (588)
T d1b3ua_ 268 ELQKAVGPEITKT-DLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HHHHHHCHHHHHH-THHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8887766534344-4168999987213357779999879999
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|