Citrus Sinensis ID: 000969

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQSVRAKAKSIPRQGKPYGTQRHPVELVTVSVDGLQTLKPQVQKDLQPGVLPANGIKESAGSSGGINVEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPHLSRRSSGQSIGQFSLENSVTKSSHTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQI

cHHHHHHHHHHHHHHHHcccccccEEEEccEEEEEcccccHHHHHHHccccccEEEEEEEEEEEEEEEcccccccccccEEEEEcEEEEcccccccccccccccccccccccccccccccHHHHccccEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEcccccEEEccccEEcccccccEEEEEEEEEEcEEEEEEcccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEEEccccccccEEEEEEEccccccccccHHHHHHHHHHHccEEEEccccccccccccHHHHccccEEEEEEEEEEEEEEccHHHHHHHHHHHcccEEEEccccccccccEEEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEccccccccccccccccEEEcccEEEEEccccHHHHHHHccccEEEccccccccccccEEEEEEcccEEEEEccccccccccccccccccccccccEEEEEcEEcccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEccccEEEEEEEEccccccccccccccEEEEEEEEEcccccccEEHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEEEcccEEEEEEcccccEEEEEEEcEEEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEccccccccccEEEEEEEEEEEEcccHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcHHHHccccHHccccccccccccccccccEEccccEEEEcccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cHHHHHHHHHHHHHHHHHcccHcHEEccccEEEEEcccccHHHHHHHcccccHEEEEEEEEcEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccccccccccccccccccccccHHHHHEccEEEEEEEEEEEEEEccccccccccccccccEEEEEEEEEEEEccccccEccccEEEEccccccEEEEEEEEEEEEEEEEcccccccccHHHccccccccccccccccEEEEEcccHHHcccccEEEEEEEEccccccccEEEEEEccHccccccccHHHHHHHHHHccEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHcccEcccccccccccEEEEEHHHHHHHccccccEEEcccccccccccccccHHHHHccccccccccccEEEcccccEEEEEEEEEccccccccccccEEEEccccEEEEcHHHHHHHHHHHHccEEEccccccccccHHEEEEEEccccEEEEccHHHccccccccccccccccccEEEEEEcEEEccccccEEEEEcccccccEEEEcccccccccHHHHHHHccHHEEEEEEccccccccccccccEEEEEccccEEEEEEEEccccccccccccccEEEEEEEHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHccccccHHcccccccHcHHHHcccccEEEEEEHHcEEEEccccccccccccEEEEEcccEEEEEEEcccccEEEEEcEEEEEEEEEEEEccccccccccccEEcccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEEEcEEcccHHHHHHHHHHHHccccccccccccHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHcHHHHHHcccccccccccccccEEEEEEEEEEEEcccccccccccccccccEEEEEEEcHHHHcccccccccccccccccccEEEEEccccEEEEEEEEEccccccccHccEEEEEEEEEEcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MESIIARALEYTFKYWLKSFSRDQFKLQGrtaqlsnldingdalhasmglppalhvTTAKLGKleiilpssvsnvqiepivLQVDRLDlvleenpdkdacnyasstptptgsskgsgygfadkiadgmtlQVNTVNLLLVTrggaqrdggaswtppmasiTIRNLVLCTTNENWQVVNLKeardfslnkKFIYVFKKLEWETLsvdllphpdmfadgsiarsnegashrdedgakraffggerfieGISAQAYITVQRTelnsplglevQLHVTEAvcpalsepGLRALLRFLSGLYvclnrddvdlttqqlsteAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFsratvsdgetasnLTKITVAGLflrdtfsrppstlvqpsmqavSEDLVlipdfakdfcpvicplgdqqwqinkgvpliclhtlqvkpspappsfasrtviscqplmihLQEESCLRISSFLADgilvnhgavlpdssvnsLAFYledlditvpldmnkldnharqrnltahssfaGARLHIKKLffsespslkLRLLHlekdpacfclwedqpidasqrkwtagASHLSLSLETCtsitgsqnsnsglwKCVELKDACIEVAMvsadgkpltvvpppggvvRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKlmenapndtaVSLAVKDLQlrflepssmniegmplvqfvgedMFIKVTHRTLGGAVAVSSTILWESvevdcvdteenlphengillppsescpqdigngypqLRAVFWVHkkgkhrlndsayampfldmsmvhviplsegdrechsLSLSACIsgvrlgggMNYAEALLHRFgilgpdggpgeglskgiehlsegplsklfkasplsvedvgegrnsldgkdglvhlglpddVDICVELKDWLFALEGAQEMEERCClssqevgreerswHTTFQSVRAKaksiprqgkpygtqrhpveLVTVSVdglqtlkpqvqkdlqpgvlpangikesagssggiNVEIRMVISEDNAENEMDKWMVENLKfsvkepieAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDqlgnlgsggfdkifsphlsrrssgqsigqfslensvtksshtSLESTLTSLEEAVSDSQAKCAALVTNlgsteyssDHLASINQLREKIESMQSLLTQLRSQI

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILpssvsnvqiepiVLQVDRLDLVLEENpdkdacnyasstptptgsskgSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNlkeardfslnKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARsnegashrdedGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRAtvsdgetasnltKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSItgsqnsnsgLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIvrvgknksamksgNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSqevgreerswhttfqsvrakaksiprqgkpygtqrhpVELVTVSVDGLQTLKpqvqkdlqpgvlpangikesagssgginvEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPHLSRRSSGQSIGQFSLENSVTKSSHTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQI

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYAsstptptgsskgsgYGFADKIADGMtlqvntvnlllvtRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADgkpltvvpppggvvrigvACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFgilgpdggpgeglskgIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQSVRAKAKSIPRQGKPYGTQRHPVELVTVSVDGLQTLKPQVQKDLQPGVLPANGIKESAGSSGGINVEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPHLSRRSSGQSIGQFSLENSVTKSSHtslestltsleeAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQI

***IIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLE*************************YGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMF*********************RAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSR****LV***MQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVK*******FASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVG*************************AVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLP****CPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGP********************************************DGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCL***************************************VELVTVSVDGLQ*****************************INVEIRMVIS******EMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIF************************************************AALVT************************************

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLV*********************************IADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPD*************************FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLN*********************SIVVDHIFLCIKDAEFQLELLMQSLFFSR*******TASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMN***************SFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLS*****************WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVS**************************NAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHE****************NGYPQLRAVFWVHKKGK*****SAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKA********************LVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQ************************LVTVSVDGLQTLK**********************SSGGINVEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFD**************************************SLEEAVSDSQAKCAAL*******************LREKIESMQSLLTQLRS**

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYA************SGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIAR**********DGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEM*************************************PYGTQRHPVELVTVSVDGLQTLKPQVQKDLQPGVLPANGIKESAGSSGGINVEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPHL*********GQFSL***************************AKCAALVTNLGSTEYSSDHLASINQLREKIESMQS*********

*ESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPD********************GYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSI************DGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLST*AAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSIT****SNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVG***************KLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGK****DSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPL****************GLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQSVRAKAKSI*R*****GTQRHPVELVTVSVDGLQTLKPQVQKDLQPGVLPANGIKESAGSSGGINVEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSP*****************************S*LTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQ*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1206	2.2.26 [Sep-21-2011]
Q6BDS2		1440	UHRF1-binding protein 1 O	yes	no	0.156	0.131	0.235	5e-09
Q6NRZ1		1415	UHRF1-binding protein 1-l	N/A	no	0.156	0.133	0.235	6e-09
A2RSJ4		1457	UHRF1-binding protein 1-l	no	no	0.155	0.129	0.239	6e-09
A0JNW5		1464	UHRF1-binding protein 1-l	no	no	0.155	0.128	0.229	1e-07

>sp\|Q6BDS2\|URFB1_HUMAN UHRF1-binding protein 1 OS=Homo sapiens GN=UHRF1BP1 PE=1 SV=1	Back alignment and function desciption

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 19/208 (9%)

Query: 1   MESIIARALEYTFKYWLKSFSRDQFKLQGRTA--QLSNLDINGDALHASMGLPPALHVTT 58
           M  II + +      + K+ S D+  L       QL+NL+++ + L   + LP  L +T 
Sbjct: 1   MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITR 60

Query: 59  AKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGY 118
               +  I +    + ++  PI L +D++++ ++   D    N  S     +G S+   Y
Sbjct: 61  VYCNRASIRI--QWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSE---Y 115

Query: 119 GFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVN 178
           GFA+K+ +GM + VN++ + + ++               AS  +  L   + N NWQ  +
Sbjct: 116 GFAEKVVEGMFIIVNSITIKIHSKAF------------HASFELWQLQGYSVNPNWQQSD 163

Query: 179 LKEARDFSLNKKFIYVFKKLEWETLSVD 206
           L+  R     +  +  FK++ W+TL ++
Sbjct: 164 LRLTRITDPCRGEVLTFKEITWQTLRIE 191

May act as a negative regulator of cell growth.
Homo sapiens (taxid: 9606)

>sp\|Q6NRZ1\|UH1BL_XENLA UHRF1-binding protein 1-like OS=Xenopus laevis GN=uhrf1bp1l PE=2 SV=1	Back alignment and function description

>sp\|A2RSJ4\|UH1BL_MOUSE UHRF1-binding protein 1-like OS=Mus musculus GN=Uhrf1bp1l PE=2 SV=2	Back alignment and function description

>sp\|A0JNW5\|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1206
359493954		1215	PREDICTED: uncharacterized protein LOC10	0.998	0.990	0.712	0.0
255563667		1210	conserved hypothetical protein [Ricinus	0.993	0.990	0.711	0.0
302143215		1146	unnamed protein product [Vitis vinifera]	0.941	0.990	0.684	0.0
449470413		1203	PREDICTED: uncharacterized protein LOC10	0.989	0.991	0.658	0.0
356543944		1217	PREDICTED: uncharacterized protein LOC10	0.997	0.988	0.653	0.0
356543166		1213	PREDICTED: uncharacterized protein LOC10	0.993	0.987	0.648	0.0
356549825		1216	PREDICTED: uncharacterized protein LOC10	0.995	0.987	0.654	0.0
356543942		1199	PREDICTED: uncharacterized protein LOC10	0.980	0.986	0.644	0.0
334185500		1199	uncharacterized protein [Arabidopsis tha	0.981	0.987	0.641	0.0
297830766		1199	hypothetical protein ARALYDRAFT_318821 [	0.980	0.986	0.638	0.0

>gi\|359493954\|ref\|XP_003634700.1\| PREDICTED: uncharacterized protein LOC100241773 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1728 bits (4475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 867/1217 (71%), Positives = 1006/1217 (82%), Gaps = 13/1217 (1%)

Query: 1    MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAK 60
            MESI+A ALEYT KYWLKSFSRDQFKLQGRT QLSNLDINGDALH+S+GLPPAL+VTTAK
Sbjct: 1    MESIVALALEYTLKYWLKSFSRDQFKLQGRTVQLSNLDINGDALHSSLGLPPALNVTTAK 60

Query: 61   LGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGF 120
            +GKLEI+LP  VSNVQIEP+V+Q+DRLDLVLEEN D DAC  +SST + T S KGSGYGF
Sbjct: 61   VGKLEILLPY-VSNVQIEPVVVQIDRLDLVLEENSDVDACRSSSSTQSSTSSGKGSGYGF 119

Query: 121  ADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLK 180
            ADKIADGMTL+V TVNLLL TRGGA+  GGA+W  P+ASITIRNL+L TTNENW VVNLK
Sbjct: 120  ADKIADGMTLEVRTVNLLLETRGGARCQGGATWASPLASITIRNLLLYTTNENWHVVNLK 179

Query: 181  EARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFG 240
            EARDFS +KKFIYVFKKLEWE LS+DLLPHPDMF D +IA   E  + RDEDGAKR FFG
Sbjct: 180  EARDFSNDKKFIYVFKKLEWEFLSIDLLPHPDMFMDANIAHPEEEVNRRDEDGAKRVFFG 239

Query: 241  GERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCL 300
            GERFIEGIS +AYITVQRTELNSPLGLEVQLH+TEAVCPALSEPGLRALLRFL+GLYVCL
Sbjct: 240  GERFIEGISGEAYITVQRTELNSPLGLEVQLHITEAVCPALSEPGLRALLRFLTGLYVCL 299

Query: 301  NRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETA 360
            NR DVD   QQ +TE+AGRSLVSI+VDHIFLCIKDAEF+LELLMQSLFFSRA+VSDGE  
Sbjct: 300  NRGDVDPKAQQRTTESAGRSLVSIIVDHIFLCIKDAEFRLELLMQSLFFSRASVSDGEKT 359

Query: 361  SNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQI 420
             NL ++ + GLFLRDTFS PP TLVQPSMQAV++D++ IP+F ++FCP I PLG+QQWQ+
Sbjct: 360  KNLNRVMIGGLFLRDTFSHPPCTLVQPSMQAVTKDVLHIPEFGQNFCPAIYPLGEQQWQL 419

Query: 421  NKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGA 480
            ++G+PLICLH+LQVKPSPAPP FAS+TVI CQPLMIHLQEESCLRISSFLADGI+VN GA
Sbjct: 420  HEGIPLICLHSLQVKPSPAPPCFASQTVIDCQPLMIHLQEESCLRISSFLADGIVVNPGA 479

Query: 481  VLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPS 540
            VLPD SV+SL F L++LDIT+P+D  + +  A   N T  SSFAGARLHI+ LFFSESP 
Sbjct: 480  VLPDFSVDSLVFTLKELDITIPMDTGESNISAGDSNSTHQSSFAGARLHIENLFFSESPK 539

Query: 541  LKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQ---NSNSGL 597
            LKLRLL+LEKDPACF LW  QPIDASQ+KWT GAS L LSLETC+ +TG Q     +SG 
Sbjct: 540  LKLRLLNLEKDPACFSLWAGQPIDASQKKWTTGASQLILSLETCSDLTGLQIPLERSSGS 599

Query: 598  WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTY 657
            W+CVELKDACIEVAM +ADG+PL  +PPPGGVVR+GVA QQYLSNTSVEQLFFVLD+YTY
Sbjct: 600  WRCVELKDACIEVAMATADGRPLISIPPPGGVVRVGVAFQQYLSNTSVEQLFFVLDLYTY 659

Query: 658  FGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEG 717
            FGRVSEKI  VGKN     S NE+L   LME  P+DTAVSLAVKDLQL+FLE SSM+I  
Sbjct: 660  FGRVSEKIAIVGKNNRPKTSENEALAGSLMEKVPSDTAVSLAVKDLQLQFLESSSMDIHE 719

Query: 718  MPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC 777
            MPLVQFVG+D+FIKVTHRTLGGA+A+SST+ W SVE+DCVDTE NL HENG  L  +E+ 
Sbjct: 720  MPLVQFVGDDLFIKVTHRTLGGAIAISSTLHWGSVEIDCVDTEGNLLHENGTTLTSTENG 779

Query: 778  PQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSAC 837
                G+G PQLR VFWV  K KHR N  A+A+P LD+S+VHVIP +  D ECHSLS++AC
Sbjct: 780  LLSAGSGSPQLRPVFWVQNKWKHRSNGIAHAIPLLDISVVHVIPYNAQDIECHSLSVAAC 839

Query: 838  ISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVG 897
            I+GVRLGGGMNYAE LLHRFGILG DGGPGEGLSKG+E+LS GPLSKLFKASPL V+++ 
Sbjct: 840  IAGVRLGGGMNYAETLLHRFGILGADGGPGEGLSKGLENLSAGPLSKLFKASPLLVDNLE 899

Query: 898  EGRNSLDGKD-GLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQE-VGREERSW 955
            E  +  DGKD G ++LG PDDVD+ +ELKDWLFALEGAQE  ER    + E +GREER W
Sbjct: 900  ENGSYRDGKDNGFLNLGKPDDVDVSIELKDWLFALEGAQETAERWWFYNDENIGREERCW 959

Query: 956  HTTFQSVRAKAKSIPR-----QGKPYGTQRHPVELVTVSVDGLQTLKPQVQKDLQPGVLP 1010
            HTTFQS++ KAK  P+     +GK   TQ++PVEL+TV ++GLQ LKP   K +     P
Sbjct: 960  HTTFQSLQVKAKGSPKRLLNGKGKSQETQKYPVELITVGIEGLQILKPNAAKGILQAGFP 1019

Query: 1011 ANGIKESAGSSGGINVEIRMVISEDNAENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLA 1070
              GIKE+  +SGGIN E+ +++SEDNA +E+ KWMVENLKFSVK+PIEAIVTKDE+++LA
Sbjct: 1020 VEGIKETVETSGGINCEVSILVSEDNAHDEIGKWMVENLKFSVKQPIEAIVTKDELQYLA 1079

Query: 1071 FLCKSEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPH-LSRRSSGQS 1129
            FLCKSEV+SMGRIAAG+LR+LKLE ++GQ+AIDQL NLG+ GFDKIFSP  LS  S   +
Sbjct: 1080 FLCKSEVDSMGRIAAGILRVLKLEGSVGQAAIDQLSNLGTEGFDKIFSPEILSPHSYASN 1139

Query: 1130 IGQFSLENSVTKSSHTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLR 1189
            IG F+  N   +S H SLEST+ SLEEAV DSQAKC AL+  L S+E S  HLAS+ QL 
Sbjct: 1140 IG-FTPANGNGQSPHPSLESTVFSLEEAVLDSQAKCTALIAELRSSESSRHHLASVKQLS 1198

Query: 1190 EKIESMQSLLTQLRSQI 1206
            +K+ESMQSLL +LR+Q+
Sbjct: 1199 QKLESMQSLLAKLRTQV 1215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255563667\|ref\|XP_002522835.1\| conserved hypothetical protein [Ricinus communis] gi\|223537919\|gb\|EEF39533.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|302143215\|emb\|CBI20510.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449470413\|ref\|XP_004152911.1\| PREDICTED: uncharacterized protein LOC101210396 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356543944\|ref\|XP_003540418.1\| PREDICTED: uncharacterized protein LOC100811661 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356543166\|ref\|XP_003540034.1\| PREDICTED: uncharacterized protein LOC100782617 [Glycine max]	Back alignment and taxonomy information

>gi\|356549825\|ref\|XP_003543291.1\| PREDICTED: uncharacterized protein LOC100803142 [Glycine max]	Back alignment and taxonomy information

>gi\|356543942\|ref\|XP_003540417.1\| PREDICTED: uncharacterized protein LOC100811661 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|334185500\|ref\|NP_001189943.1\| uncharacterized protein [Arabidopsis thaliana] gi\|29824401\|gb\|AAP04160.1\| unknown protein [Arabidopsis thaliana] gi\|110737203\|dbj\|BAF00550.1\| hypothetical protein [Arabidopsis thaliana] gi\|332642895\|gb\|AEE76416.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297830766\|ref\|XP_002883265.1\| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata] gi\|297329105\|gb\|EFH59524.1\| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_3001837	annotation not avaliable (1199 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1206
pfam12624		117	pfam12624, Chorein_N, N-terminal region of Chorein	2e-04

>gnl\|CDD\|204985 pfam12624, Chorein_N, N-terminal region of Chorein, a TM vesicle-mediated sorter	Back alignment and domain information

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 2  ESIIARALEYTFKYWLKSFSRDQFKLQ--GRTAQLSNLDINGDALHASMGLPPALHVTTA 59
          ES++A  L      ++++  ++Q  +       +L NL +  DAL   + LP  + V + 
Sbjct: 2  ESLVADLLNRYLGEYVENLDKEQLSVSIWSGDVELENLRLKKDAL-DKLDLP--IEVKSG 58

Query: 60 KLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKD 98
           +GKL + +P    ++  EP+V+ +D + ++     + +
Sbjct: 59 HIGKLTLKIP--WKSLGSEPVVITIDDVYILASPKDNDE 95

Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1206
KOG2955		1069	consensus Uncharacterized conserved protein [Funct	100.0
COG5043		2552	MRS6 Vacuolar protein sorting-associated protein [	100.0
KOG1809		1827	consensus Vacuolar protein sorting-associated prot	99.97
PF12624		118	Chorein_N: N-terminal region of Chorein, a TM vesi	99.79

>KOG2955 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=1.9e-228  Score=1923.40  Aligned_cols=1049  Identities=53%  Similarity=0.822  Sum_probs=987.8

Q ss_pred             ChHHHHHHHHHHHHHHhcCCCcccccc---ccCeEEeeccccChhhhhhhcCCCCceEEeEEEeeeEEEEcCcccccccc
Q 000969            1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI   77 (1206)
Q Consensus         1 MESLVa~lLnryLgkYVKNLspDQLnL---sGGdVeL~NLELKedAL~e~L~LP~wL~V~~G~~GkLtLKIP~SWTNLKs   77 (1206)
                      |||||+++|.++|++|+|||+||||+|   +| +++|+|||||+|||++.|+||+||.|+++|||++.|.||  |||||+
T Consensus         1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT   77 (1069)
T KOG2955|consen    1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT   77 (1069)
T ss_pred             CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence            999999999999999999999999998   66 999999999999999999999999999999999999999  999999


Q ss_pred             ccEEEEEceEEEEeccCCCccccccCCCCCCCCCCCCCCCCchHHhhhcCeEEEEEEEEEEEEeCCCCccCCCCCCCCcE
Q 000969           78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM  157 (1206)
Q Consensus        78 ePVvI~ID~IyLvaep~~~~E~~r~~~~ss~~ass~~~s~yGFitKIIDNLQV~InNIHIRYED~~sa~~~~s~p~hPFa  157 (1206)
                      +||+|.||+|.++++++++   .+.+++++|.+....+++|||++||++||.++|+.|.|+++..+            |+
T Consensus        78 ~PI~v~iDkl~l~le~~~e---~~~~~gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~  142 (1069)
T KOG2955|consen   78 EPIVVQIDKLDLVLEENPE---ADVTKGPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA  142 (1069)
T ss_pred             cceEEEeeeeeEEeecCcc---ccCCCCCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence            9999999999997766554   44455555655445567899999999999999999999999986            57


Q ss_pred             EEEEEeeeEEEecCCCccccccchhhccccCCceEEEEEEEEeccceeeccccccccccccccccccCCCCCCCCCCccc
Q 000969          158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA  237 (1206)
Q Consensus       158 aGITLseLSaqSTDenWqp~dLretr~~s~~kg~ilIFKlLeweSLSI~L~p~~dmf~d~~~~~s~e~sn~r~~~~~~Ry  237 (1206)
                      ++++|++|+++|||+.|+.++|++||++++++|.+++||+++|+.|+|++.+++.|- .....          ...+.|+
T Consensus       143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~~-e~~~~----------~~ap~rL  211 (1069)
T KOG2955|consen  143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSMT-EANLA----------RSAPARL  211 (1069)
T ss_pred             eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCchh-hHHHh----------hcCceee
Confidence            999999999999999999999999999999999999999999999999997777652 22111          1355666


Q ss_pred             cccCcceeecceeEEEEEEcccccCCCCccceeeeeccccccccChHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhh
Q 000969          238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA  317 (1206)
Q Consensus       238 Ifg~~rLLkPISGeARITLnK~e~D~~v~~dkl~LILDEI~~vLSd~QYrdlL~fl~SL~~~m~R~~v~pk~qq~~~eaa  317 (1206)
                      |+        ..|.+|||++|+..|++++..++++|+|+++|+||++|+|++++|+++++.|++|++++||+||      
T Consensus       212 it--------~~gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------  277 (1069)
T KOG2955|consen  212 IT--------EDGKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------  277 (1069)
T ss_pred             ec--------cCCeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence            53        4599999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ccceeeEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeecccCCCCCceeeccccccccccCC
Q 000969          318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV  397 (1206)
Q Consensus       318 g~s~~~~~~dhifl~ikd~~f~lell~~sl~~~ras~~~~~~~~~lt~i~igglflrd~fs~ppc~lvqpsm~~~~~~~~  397 (1206)
                                                        |+|+++++.++++.|++||+|+||.||+-||.+.||+|.+.... +
T Consensus       278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L  322 (1069)
T KOG2955|consen  278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L  322 (1069)
T ss_pred             ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence                                              99999999999999999999999999999999999999976555 9


Q ss_pred             CcchhhhccCCccccCCcccceeccCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceecc
Q 000969          398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN  477 (1206)
Q Consensus       398 ~vp~fa~~~~p~i~pl~~~~~~~~~~~pl~cl~s~q~~psp~pp~~asqtvi~cqpl~i~lqe~sclrissfladgivv~  477 (1206)
                      +||+|+.+|||-|||+++..|+..-+.|.+-||++||+|+|-||+||+.||++|+|+|.|+||+.|+|+++|+++|||||
T Consensus       323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~  402 (1069)
T KOG2955|consen  323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN  402 (1069)
T ss_pred             ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCccceEEEEeecceeeeccCccccchhhhccCccccCCcccceEEeeceecccCccccceecccCCCCceeec
Q 000969          478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL  557 (1206)
Q Consensus       478 ~g~~lpd~s~~s~~f~lke~dltvp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~f~~sp~l~~rll~l~~dpacf~l  557 (1206)
                      ||+++||-++||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.++.|++|+|+||||||+
T Consensus       403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~  482 (1069)
T KOG2955|consen  403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL  482 (1069)
T ss_pred             CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEeecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 000969          558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV  634 (1206)
Q Consensus       558 w~~qpvdasq~kw~~~as~lslslet~~~~~~~~~~---~~~lw~cvel~d~~~e~am~tadg~pl~~vpppggivr~gv  634 (1206)
                      |+||||++||++|+++|+|+|+..+|..-.+..|.+   +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus       483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~  562 (1069)
T KOG2955|consen  483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV  562 (1069)
T ss_pred             CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence            999999999999999999999999999999999877   99999999999999999999999999999999999999999


Q ss_pred             eeecccccccchhhhhHHHHhhhhchhhhHhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 000969          635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN  714 (1206)
Q Consensus       635 ~c~q~~sntsveql~fvl~ly~y~g~v~e~i~~~~~~~~~~~~~~~s~~~~l~~~vp~dtav~l~~~~l~~~fles~~~~  714 (1206)
                      +|++|.+-+++||+|||+|+|+|||+++|+|+.+++.+|.   +.-+.++++.++||+||||.|..|+||.+||+++-+.
T Consensus       563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~  639 (1069)
T KOG2955|consen  563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS  639 (1069)
T ss_pred             ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence            9999999999999999999999999999999999999999   8889999999999999999999999999999999999


Q ss_pred             cCCCceeEEecCceeEEEeccccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCcceeEEEE
Q 000969          715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW  793 (1206)
Q Consensus       715 ~eg~plvqf~g~dl~~~vthrtlgga~~vss~l~w~~v~v~cv~~e~~~~~en~~~~~~~~~~-~~~~~~g~p~lr~vfw  793 (1206)
                      ++|||++|+.+.++..++||||++||++||++++|+.++++||++..++.|||.+      ++ ..+..+|.-.+|.+||
T Consensus       640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~  713 (1069)
T KOG2955|consen  640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW  713 (1069)
T ss_pred             ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence            9999999999999999999999999999999999999999999999999999988      34 5677889999999999


Q ss_pred             EecCCcccccCCcCCCCeeeeeeeEEeeCcCCCccccceeeEEEEeeEEecCchhhHHHHHhHhcccCCCCCCCcchhhh
Q 000969          794 VHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKG  873 (1206)
Q Consensus       794 v~~~~~~~~~~~~~~~pfldi~~~hvip~~~~d~e~hsl~v~a~vsgvrlgggm~y~e~llhrfgilgpdggpg~gl~k~  873 (1206)
                      +.|+++....+...+ ||+||+++||||+.|.|++|||.+++|--                                   
T Consensus       714 ~tNg~~~~~S~dtl~-~f~~is~~~vi~l~e~~~~~~S~~i~~y~-----------------------------------  757 (1069)
T KOG2955|consen  714 VTNGRHDEHSGDTLT-PFLDISITHVIPLSEKDMECHSVSIVAYG-----------------------------------  757 (1069)
T ss_pred             ecCCCCCCcccccee-ecccceeEEEeehhhcccccceeeehhcC-----------------------------------
Confidence            999988877777654 99999999999999999999999987631                                   


Q ss_pred             hcccCCCccccccccCCCcccccCCCCcc-cCCCCCcccCCCCCceeeEEEeehhhhhccChhhhhhhccc-CCcccccc
Q 000969          874 IEHLSEGPLSKLFKASPLSVEDVGEGRNS-LDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCL-SSQEVGRE  951 (1206)
Q Consensus       874 l~~ls~gpl~~lfk~s~~~~~d~~~~~~~-~~~~~~~~~l~~pd~~dv~i~l~dwlfaleg~~~~~~~~~~-~~~~~~re  951 (1206)
                                                 .+ ..+-+|++||+.|||+||.|+||||+|||||.+.++.|  . ++|++|||
T Consensus       758 ---------------------------~~~~~~l~g~l~l~~~~~i~v~v~lr~~~~al~~~~~~~~~--~l~~e~i~~~  808 (1069)
T KOG2955|consen  758 ---------------------------TPGNWNLDGFLHLGRPDDIDVSVELRDWLFALEGREGVGTR--ILNNEDIGRE  808 (1069)
T ss_pred             ---------------------------CcchhccccceeecCCcceeeeEeehhhHHHhhcCcccccc--cccccccCcc
Confidence                                       11 22334899999999999999999999999999999988  5 88999999


Q ss_pred             cceeeeeeceEEEeeccCCCC------CCCCCcccCCceEEEEEeecccccccccccC-CCCCCCCCCCcccccccccce
Q 000969          952 ERSWHTTFQSVRAKAKSIPRQ------GKPYGTQRHPVELVTVSVDGLQTLKPQVQKD-LQPGVLPANGIKESAGSSGGI 1024 (1206)
Q Consensus       952 e~~wh~tf~~l~~~a~~~~~~------~~~~~~~~~p~~~~t~~~eglq~~kp~~~~~-~~~~~l~~~~~~~~~~~~~g~ 1024 (1206)
                      +||||+||+..+|.||++|+.      ++++..|+||+..+.|.+||||+.||++||| ..+|.+.+||+.|+.+++||+
T Consensus       809 ~~~~~~~~~~~~~~ak~~~~~~d~n~~~~~~~~h~~~~~s~~v~~~~l~~~~p~~~k~~~~~n~~~~~~~~~~~~~h~g~  888 (1069)
T KOG2955|consen  809 ERCWHTNFRTFRVIAKSTPKNVDSNGTENQCDAHKYPVDSIIVSVEGLQTVKPQMQKGTDSCNGLSTNGVHENGQMHGGV  888 (1069)
T ss_pred             ccccccccccceEeecccccccccccchhhhhcccCCCceeEEEcccCcccChHhhcCccccccccccchhhcchhccCe
Confidence            999999999999999999995      7888999999999999999999999999999 789999999999999999999


Q ss_pred             eeEEEEEeeccc-cccccchhheeceeccccCceEEeeehHHHHHHHHHhHhHhhhhhhhHHHHHhhhhhccccchhhHH
Q 000969         1025 NVEIRMVISEDN-AENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAID 1103 (1206)
Q Consensus      1025 ~~e~~lv~~e~~-~~~~~~~w~~~~~k~sv~~pie~~~tk~e~~~l~~lckse~~a~~ri~ag~lrllkle~s~gq~~id 1103 (1206)
                      +.|..++..|+. ++|...+|+.|.+||+|+||+||++||||+||++||||+|||+||||.|||+|.+|||.++||++.+
T Consensus       889 ~~e~~~~~~~~ks~~d~~~~~~~~s~~~~~~~~~~~v~t~d~~~~~~~l~~s~~~~~~~~v~~v~~~~~l~~~~~~~t~n  968 (1069)
T KOG2955|consen  889 NIEANIVASEDKSVHDDLLNWVAESLKFSVKQPVEAVVTKDELQHLTFLCKSEIDAMGRIVAGVLRVLKLEESIGQATLN  968 (1069)
T ss_pred             ecccccccccccccchhhhhhhhhhhhhhhcCcchhhcccccccCeeeeehhhhhhhhhHHHHHHHHHhhhhhhhhhhhh
Confidence            999999999998 8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCccccCccccCCCCCCCCCCCCCccc-ccC--CcccchhhhHHHHHHHhhhhHHHHHHHHhhccCCccchh
Q 000969         1104 QLGNLGSGGFDKIFSPHLSRRSSGQSIGQFSLENS-VTK--SSHTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSD 1180 (1206)
Q Consensus      1104 ql~~lg~~g~d~~f~p~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~ 1180 (1206)
                      |++|+|++||||+|+|.-||.++|-+.  |.+..+ ++-  +-..++|+|++++|+|.|+.+|||.++++|+..+|++..
T Consensus       969 ~~~~~~~~~~~~~~~~~as~ag~pk~~--p~~a~l~~~~~~~~ra~~~~ti~si~~~sm~le~~~~a~~sd~~~~~~~~~ 1046 (1069)
T KOG2955|consen  969 QLSNLGSEGFDKMFSPKASRAGSPKSS--PFAASLDSMREISLRANLESTISSIEEASMELEAKCSALVSDLNDSESSAK 1046 (1069)
T ss_pred             hhhcccCCCcccccCccccccCCCCCC--CccchhHHHHHHHhhhhhhcchhhhhhHHHHHHHHHhhhcchhhhhhhhhc
Confidence            999999999999999998888888887  544422 111  112289999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000969         1181 HLASINQLREKIESMQSLLTQLRSQI 1206 (1206)
Q Consensus      1181 ~~~~~~~l~~~le~mq~l~~~lr~~i 1206 (1206)
                      |   .+.+.|++|+.|+|+++||+||
T Consensus      1047 ~---~n~~~~~~~s~~s~~a~~~~q~ 1069 (1069)
T KOG2955|consen 1047 H---ANELKQKLESLQSLMAKLRTQI 1069 (1069)
T ss_pred             c---hhhHHHHHHHHHHHHhhhhcCC
Confidence            9   7889999999999999999997

>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1206
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.4 bits (122), Expect = 2e-06
 Identities = 94/631 (14%), Positives = 176/631 (27%), Gaps = 193/631 (30%)

Query: 206 DLLPH--PDMFAD----------GSIARSNE-----GASHRDEDGAKRAFF--------G 240
           D+L         +           SI    E      +      G  R F+         
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEM 78

Query: 241 GERFIEGISAQAY---ITVQRTELNSPLGLEV-------QLHVTEAVCPALS----EP-- 284
            ++F+E +    Y   ++  +TE   P  +         +L+    V    +    +P  
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 285 GLR-ALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRS-LVSIVV----------DHIF-- 330
            LR ALL       V ++               +G++ +   V             IF  
Sbjct: 139 KLRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 331 ---LCIKDAEFQLELLMQSLF--FSRATVSDGETASNLT-KITVAGLFLRDTFSRP--PS 382
               C    E  LE+L Q L         S  + +SN+  +I      LR         +
Sbjct: 188 NLKNC-NSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 383 TLVQPSMQAVSEDLVL----IPDFAKDF---CPVI-------------------CPLGDQ 416
            L           LVL           F   C ++                     L   
Sbjct: 246 CL-----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 417 QWQINKGVPL-ICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGIL 475
              +       + L  L  +P   P       V++  P  + +       I+  + DG  
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSI-------IAESIRDG-- 340

Query: 476 VNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLD-NHARQRNLTAHSSFAGARLHIKKLF 534
                    +  N      + L   +   +N L+    R+        F        +L 
Sbjct: 341 -------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------F-------DRLS 379

Query: 535 -FSES---PSLKLRLLHLEKDPACFCLWEDQPIDAS--QRKWTAGASHL-SLSLETCTSI 587
            F  S   P++ L L+  +   +   +  ++    S  +++       + S+ LE    +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 588 TGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQY-------- 639
                          L  + ++   +        ++PP            QY        
Sbjct: 440 ENEY----------ALHRSIVDHYNIPKTFDSDDLIPPY---------LDQYFYSHIGHH 480

Query: 640 LSNTSVEQLFFVL-DIYTYFGRVSEKIVRVGKNKSAMKSGNESLG-VKLMEN--APNDTA 695
           L N    +   +   ++  F  + +KI       +A  S   +L  +K  +     ND  
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 696 VSLAVKDLQLRFL---EPSSMNIEGMPLVQF 723
               V  + L FL   E + +  +   L++ 
Sbjct: 541 YERLVNAI-LDFLPKIEENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00